Multiple sequence alignment - TraesCS6B01G167900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G167900 chr6B 100.000 4584 0 0 1 4584 177269168 177273751 0.000000e+00 8466.0
1 TraesCS6B01G167900 chr6B 83.333 102 9 8 2002 2095 183717426 183717325 2.270000e-13 87.9
2 TraesCS6B01G167900 chr6D 96.977 2878 67 11 1 2861 95726708 95723834 0.000000e+00 4815.0
3 TraesCS6B01G167900 chr6D 95.320 876 29 9 3011 3883 95723835 95722969 0.000000e+00 1380.0
4 TraesCS6B01G167900 chr6D 89.496 476 30 12 3913 4384 95722972 95722513 6.610000e-163 584.0
5 TraesCS6B01G167900 chr6D 87.421 159 15 4 2856 3014 54895795 54895642 1.310000e-40 178.0
6 TraesCS6B01G167900 chr6D 82.955 88 7 6 2015 2095 24825560 24825474 6.360000e-09 73.1
7 TraesCS6B01G167900 chr6D 83.529 85 7 5 2007 2084 168293837 168293753 6.360000e-09 73.1
8 TraesCS6B01G167900 chr6D 82.558 86 8 5 2007 2085 90224380 90224295 8.230000e-08 69.4
9 TraesCS6B01G167900 chr6D 82.558 86 6 6 2007 2084 32919161 32919245 2.960000e-07 67.6
10 TraesCS6B01G167900 chr6D 80.899 89 11 6 2002 2084 112793497 112793409 1.060000e-06 65.8
11 TraesCS6B01G167900 chr6A 97.197 1213 31 2 837 2047 113515064 113516275 0.000000e+00 2049.0
12 TraesCS6B01G167900 chr6A 95.189 873 35 6 3012 3883 113517040 113517906 0.000000e+00 1373.0
13 TraesCS6B01G167900 chr6A 96.330 763 25 2 2100 2859 113516276 113517038 0.000000e+00 1251.0
14 TraesCS6B01G167900 chr6A 94.055 471 23 2 1 470 113510602 113511068 0.000000e+00 710.0
15 TraesCS6B01G167900 chr6A 93.197 294 19 1 471 764 113511147 113511439 9.110000e-117 431.0
16 TraesCS6B01G167900 chr6A 94.737 95 3 2 2540 2633 250692221 250692314 3.700000e-31 147.0
17 TraesCS6B01G167900 chr4D 89.873 158 13 3 2860 3015 127158997 127159153 2.800000e-47 200.0
18 TraesCS6B01G167900 chr4D 88.166 169 12 8 2848 3013 365080895 365080732 1.300000e-45 195.0
19 TraesCS6B01G167900 chr4D 81.818 99 10 7 1993 2084 124628865 124628768 4.920000e-10 76.8
20 TraesCS6B01G167900 chr4D 83.529 85 7 5 2007 2084 371926816 371926900 6.360000e-09 73.1
21 TraesCS6B01G167900 chr4D 93.617 47 3 0 2007 2053 16052403 16052449 2.290000e-08 71.3
22 TraesCS6B01G167900 chr4D 97.561 41 1 0 2007 2047 491950767 491950807 2.290000e-08 71.3
23 TraesCS6B01G167900 chr4D 81.609 87 9 6 2007 2086 262040863 262040777 1.060000e-06 65.8
24 TraesCS6B01G167900 chr4D 80.460 87 10 5 2007 2086 29238314 29238228 4.950000e-05 60.2
25 TraesCS6B01G167900 chr5B 90.260 154 12 3 2859 3012 266358800 266358650 1.010000e-46 198.0
26 TraesCS6B01G167900 chr5B 90.260 154 12 3 2859 3012 266361359 266361209 1.010000e-46 198.0
27 TraesCS6B01G167900 chr5B 94.186 86 5 0 2550 2635 12859246 12859161 1.030000e-26 132.0
28 TraesCS6B01G167900 chr5B 84.043 94 7 6 2007 2093 547451169 547451077 2.940000e-12 84.2
29 TraesCS6B01G167900 chr5A 88.889 162 13 3 2856 3017 427828590 427828434 1.300000e-45 195.0
30 TraesCS6B01G167900 chr7B 90.278 144 13 1 2860 3003 103571029 103571171 2.180000e-43 187.0
31 TraesCS6B01G167900 chr2A 88.608 158 12 3 2860 3012 695187415 695187259 2.180000e-43 187.0
32 TraesCS6B01G167900 chr4A 88.158 152 14 3 2855 3006 36356407 36356554 1.310000e-40 178.0
33 TraesCS6B01G167900 chr4A 82.979 94 9 5 2003 2089 556768041 556767948 1.370000e-10 78.7
34 TraesCS6B01G167900 chr4A 83.516 91 6 7 2002 2084 253682282 253682193 4.920000e-10 76.8
35 TraesCS6B01G167900 chr3B 93.878 98 4 2 2547 2643 229298685 229298781 3.700000e-31 147.0
36 TraesCS6B01G167900 chr5D 96.512 86 3 0 2550 2635 325476206 325476121 4.780000e-30 143.0
37 TraesCS6B01G167900 chr5D 83.146 89 9 4 2002 2084 426250539 426250451 4.920000e-10 76.8
38 TraesCS6B01G167900 chr5D 82.955 88 8 5 2004 2084 294640234 294640321 6.360000e-09 73.1
39 TraesCS6B01G167900 chr2B 94.505 91 4 1 2547 2637 37108823 37108912 6.180000e-29 139.0
40 TraesCS6B01G167900 chr2B 86.076 79 6 3 2007 2085 383562572 383562499 3.800000e-11 80.5
41 TraesCS6B01G167900 chr2B 81.188 101 12 5 1993 2086 575146976 575147076 1.770000e-09 75.0
42 TraesCS6B01G167900 chr1D 92.473 93 7 0 2541 2633 448689889 448689981 2.880000e-27 134.0
43 TraesCS6B01G167900 chr1D 86.905 84 5 5 2007 2086 329732367 329732448 6.320000e-14 89.8
44 TraesCS6B01G167900 chr1B 92.473 93 6 1 2543 2635 646470988 646470897 1.030000e-26 132.0
45 TraesCS6B01G167900 chr7D 93.421 76 4 1 2004 2079 167359316 167359390 1.350000e-20 111.0
46 TraesCS6B01G167900 chr3D 84.706 85 7 5 2007 2085 579731332 579731248 3.800000e-11 80.5
47 TraesCS6B01G167900 chrUn 83.146 89 9 3 2007 2089 23609481 23609569 4.920000e-10 76.8
48 TraesCS6B01G167900 chrUn 80.612 98 10 6 2002 2091 104668895 104668799 2.960000e-07 67.6
49 TraesCS6B01G167900 chrUn 82.022 89 7 5 2007 2092 110687412 110687494 2.960000e-07 67.6
50 TraesCS6B01G167900 chrUn 80.645 93 10 7 2002 2086 50872081 50872173 1.060000e-06 65.8
51 TraesCS6B01G167900 chrUn 80.645 93 10 7 2002 2086 50889993 50890085 1.060000e-06 65.8
52 TraesCS6B01G167900 chrUn 81.609 87 9 5 2007 2086 67634377 67634463 1.060000e-06 65.8
53 TraesCS6B01G167900 chrUn 80.612 98 7 9 2007 2094 100223821 100223726 1.060000e-06 65.8
54 TraesCS6B01G167900 chrUn 81.579 76 8 6 2013 2085 65136761 65136689 1.780000e-04 58.4
55 TraesCS6B01G167900 chrUn 94.737 38 0 2 2053 2089 104580513 104580477 1.780000e-04 58.4
56 TraesCS6B01G167900 chr1A 83.529 85 7 5 2007 2084 14584425 14584509 6.360000e-09 73.1
57 TraesCS6B01G167900 chr1A 81.522 92 9 6 2007 2091 584993940 584994030 8.230000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G167900 chr6B 177269168 177273751 4583 False 8466.000000 8466 100.0000 1 4584 1 chr6B.!!$F1 4583
1 TraesCS6B01G167900 chr6D 95722513 95726708 4195 True 2259.666667 4815 93.9310 1 4384 3 chr6D.!!$R6 4383
2 TraesCS6B01G167900 chr6A 113510602 113517906 7304 False 1162.800000 2049 95.1936 1 3883 5 chr6A.!!$F2 3882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.036732 TCCAAGTGTGACATCCTGCC 59.963 55.000 0.00 0.0 0.0 4.85 F
701 786 1.034292 GGGAGCTCTGCAATTCACCC 61.034 60.000 14.64 0.0 0.0 4.61 F
703 788 1.377536 GAGCTCTGCAATTCACCCTC 58.622 55.000 6.43 0.0 0.0 4.30 F
928 4605 1.956477 AGGTTGGTGAAATGTCTGTGC 59.044 47.619 0.00 0.0 0.0 4.57 F
2708 6389 1.521764 TGGATGGATGGTACTGGCAT 58.478 50.000 0.00 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 5683 2.779429 TATTATGGGACGGTGGGAGA 57.221 50.000 0.00 0.0 0.00 3.71 R
2346 6024 0.389817 TCACTTGTCCTCGAATGGCG 60.390 55.000 0.00 0.0 42.69 5.69 R
2601 6281 4.813027 TCCGTCCCATAATATAAGAACGC 58.187 43.478 0.00 0.0 0.00 4.84 R
2910 6592 0.034896 ACTCGTTTTGCTCCGGATGT 59.965 50.000 3.57 0.0 0.00 3.06 R
3746 7430 0.029834 CATTGCGCCACCAATCTAGC 59.970 55.000 4.18 0.0 33.35 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 152 1.349026 CCTGTCCAAGTGTGACATCCT 59.651 52.381 0.00 0.00 41.58 3.24
154 155 0.036732 TCCAAGTGTGACATCCTGCC 59.963 55.000 0.00 0.00 0.00 4.85
204 205 8.710749 AAATATATTGTTGATACCTGTGGCAT 57.289 30.769 0.00 0.00 0.00 4.40
214 215 1.600638 CTGTGGCATGGAGCTCTGA 59.399 57.895 14.64 0.55 44.79 3.27
251 252 4.457496 CAGCCGTCGCAGGTGGAT 62.457 66.667 0.00 0.00 37.52 3.41
266 267 5.069781 GCAGGTGGATAAACTGAGATACTCT 59.930 44.000 0.00 0.00 34.21 3.24
352 355 8.884726 GCTATAAGCTTAAGTTAGTTGCTTTCT 58.115 33.333 10.85 12.13 42.81 2.52
453 456 6.294731 GGAGTACACCAGCAATTTTGATCTTT 60.295 38.462 4.24 0.00 0.00 2.52
457 460 6.161381 ACACCAGCAATTTTGATCTTTCATC 58.839 36.000 0.00 0.00 0.00 2.92
533 614 3.858503 GCAAGGCAGAAAGTGTCCATTTC 60.859 47.826 0.00 0.00 37.00 2.17
535 616 3.837355 AGGCAGAAAGTGTCCATTTCTT 58.163 40.909 0.00 0.00 42.86 2.52
544 625 6.715347 AAGTGTCCATTTCTTTTTAGCACT 57.285 33.333 0.00 0.00 36.40 4.40
655 736 1.269448 TGAAAAGAACAGATTGGCCGC 59.731 47.619 0.00 0.00 0.00 6.53
701 786 1.034292 GGGAGCTCTGCAATTCACCC 61.034 60.000 14.64 0.00 0.00 4.61
703 788 1.377536 GAGCTCTGCAATTCACCCTC 58.622 55.000 6.43 0.00 0.00 4.30
705 790 1.986575 GCTCTGCAATTCACCCTCGC 61.987 60.000 0.00 0.00 0.00 5.03
741 826 9.489084 GTTGCCCAATTAATTAGGGAAATATTC 57.511 33.333 26.85 14.35 42.10 1.75
828 4503 5.067954 GGTTCACAGTAATTGGTTGGTAGT 58.932 41.667 0.00 0.00 0.00 2.73
928 4605 1.956477 AGGTTGGTGAAATGTCTGTGC 59.044 47.619 0.00 0.00 0.00 4.57
948 4625 4.035091 GTGCGGATATCATAAGTGCAAACA 59.965 41.667 4.83 0.00 32.04 2.83
971 4648 6.150307 ACATATTTATTGAACTGACAACGGCA 59.850 34.615 0.00 0.00 32.50 5.69
1140 4817 2.614057 GGTCACCTTCTTCATATTGCCG 59.386 50.000 0.00 0.00 0.00 5.69
1632 5309 8.651391 TCATCGTACTGTTCTTCAAAACTTAA 57.349 30.769 0.00 0.00 0.00 1.85
1954 5632 9.191995 CAGGAACATTGTAAGTTAATTTTGTCC 57.808 33.333 0.00 0.00 0.00 4.02
2005 5683 4.074259 TCATCTGCAGTGCATGTTTACTT 58.926 39.130 20.10 0.00 38.13 2.24
2053 5731 6.044046 ACGTTATTACATCCAATACGCTCAA 58.956 36.000 0.00 0.00 0.00 3.02
2054 5732 6.019318 ACGTTATTACATCCAATACGCTCAAC 60.019 38.462 0.00 0.00 0.00 3.18
2080 5758 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2157 5835 9.949174 GCATTTCAAGTTAATTGGTTGAATTTT 57.051 25.926 10.64 1.17 39.34 1.82
2310 5988 2.268298 ACTTGCGGCATTACTTACTCG 58.732 47.619 2.28 0.00 0.00 4.18
2346 6024 2.832733 AGGTTACTTGGCTCCTGAGTAC 59.167 50.000 0.00 0.00 0.00 2.73
2457 6135 7.127955 ACCAGTTCAAGATTACCCTATGAAGAT 59.872 37.037 0.00 0.00 31.24 2.40
2556 6236 9.948964 GTAAAAAGTAAACTATTAGTCCCTCCA 57.051 33.333 0.00 0.00 0.00 3.86
2708 6389 1.521764 TGGATGGATGGTACTGGCAT 58.478 50.000 0.00 0.00 0.00 4.40
2751 6432 7.362056 GCATAAAAGCAGTCTTGATTTCTGGTA 60.362 37.037 0.00 0.00 41.73 3.25
2870 6552 5.952347 AAAATGATTACTACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
2871 6553 5.952347 AAATGATTACTACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
2872 6554 5.532664 AATGATTACTACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
2873 6555 3.294214 TGATTACTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
2874 6556 3.053095 TGATTACTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
2875 6557 4.166725 TGATTACTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
2876 6558 4.591321 TTACTACTCCCTCCGTTCCTAA 57.409 45.455 0.00 0.00 0.00 2.69
2877 6559 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2878 6560 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2879 6561 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2880 6562 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2881 6563 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2882 6564 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2883 6565 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2884 6566 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2885 6567 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2886 6568 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2887 6569 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2888 6570 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2889 6571 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2890 6572 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2893 6575 9.694137 CCGTTCCTAAATATAAGTCTTTCTAGG 57.306 37.037 0.00 0.00 0.00 3.02
2894 6576 9.694137 CGTTCCTAAATATAAGTCTTTCTAGGG 57.306 37.037 0.00 0.00 0.00 3.53
2907 6589 9.676129 AAGTCTTTCTAGGGATTCTAATATGGA 57.324 33.333 0.00 0.00 0.00 3.41
2908 6590 9.095700 AGTCTTTCTAGGGATTCTAATATGGAC 57.904 37.037 0.00 0.00 0.00 4.02
2909 6591 9.095700 GTCTTTCTAGGGATTCTAATATGGACT 57.904 37.037 0.00 0.00 0.00 3.85
2912 6594 9.892444 TTTCTAGGGATTCTAATATGGACTACA 57.108 33.333 0.00 0.00 0.00 2.74
2914 6596 9.702253 TCTAGGGATTCTAATATGGACTACATC 57.298 37.037 0.00 0.00 41.03 3.06
2924 6606 2.396590 GGACTACATCCGGAGCAAAA 57.603 50.000 11.34 0.00 37.88 2.44
2925 6607 2.007608 GGACTACATCCGGAGCAAAAC 58.992 52.381 11.34 0.00 37.88 2.43
2926 6608 1.659098 GACTACATCCGGAGCAAAACG 59.341 52.381 11.34 0.00 0.00 3.60
2927 6609 1.274167 ACTACATCCGGAGCAAAACGA 59.726 47.619 11.34 0.00 0.00 3.85
2928 6610 1.927174 CTACATCCGGAGCAAAACGAG 59.073 52.381 11.34 0.00 0.00 4.18
2929 6611 0.034896 ACATCCGGAGCAAAACGAGT 59.965 50.000 11.34 0.00 0.00 4.18
2930 6612 0.443869 CATCCGGAGCAAAACGAGTG 59.556 55.000 11.34 0.00 0.00 3.51
2931 6613 0.320374 ATCCGGAGCAAAACGAGTGA 59.680 50.000 11.34 0.00 0.00 3.41
2932 6614 0.105224 TCCGGAGCAAAACGAGTGAA 59.895 50.000 0.00 0.00 0.00 3.18
2933 6615 1.156736 CCGGAGCAAAACGAGTGAAT 58.843 50.000 0.00 0.00 0.00 2.57
2934 6616 1.128692 CCGGAGCAAAACGAGTGAATC 59.871 52.381 0.00 0.00 0.00 2.52
2935 6617 2.069273 CGGAGCAAAACGAGTGAATCT 58.931 47.619 0.00 0.00 0.00 2.40
2936 6618 3.250744 CGGAGCAAAACGAGTGAATCTA 58.749 45.455 0.00 0.00 0.00 1.98
2937 6619 3.060895 CGGAGCAAAACGAGTGAATCTAC 59.939 47.826 0.00 0.00 0.00 2.59
2938 6620 3.994392 GGAGCAAAACGAGTGAATCTACA 59.006 43.478 0.00 0.00 0.00 2.74
2939 6621 4.143094 GGAGCAAAACGAGTGAATCTACAC 60.143 45.833 0.00 0.00 40.60 2.90
2952 6634 7.828712 AGTGAATCTACACTCTAAACTACACC 58.171 38.462 0.00 0.00 46.36 4.16
2953 6635 7.034397 GTGAATCTACACTCTAAACTACACCC 58.966 42.308 0.00 0.00 37.73 4.61
2954 6636 6.722590 TGAATCTACACTCTAAACTACACCCA 59.277 38.462 0.00 0.00 0.00 4.51
2955 6637 7.399191 TGAATCTACACTCTAAACTACACCCAT 59.601 37.037 0.00 0.00 0.00 4.00
2956 6638 8.834004 AATCTACACTCTAAACTACACCCATA 57.166 34.615 0.00 0.00 0.00 2.74
2957 6639 9.435570 AATCTACACTCTAAACTACACCCATAT 57.564 33.333 0.00 0.00 0.00 1.78
2958 6640 8.234136 TCTACACTCTAAACTACACCCATATG 57.766 38.462 0.00 0.00 0.00 1.78
2959 6641 6.869206 ACACTCTAAACTACACCCATATGT 57.131 37.500 1.24 0.00 36.56 2.29
2960 6642 7.966339 ACACTCTAAACTACACCCATATGTA 57.034 36.000 1.24 0.00 33.85 2.29
2971 6653 8.134202 CTACACCCATATGTAGTCCATATTGA 57.866 38.462 1.24 0.00 42.87 2.57
2972 6654 7.387265 ACACCCATATGTAGTCCATATTGAA 57.613 36.000 1.24 0.00 42.87 2.69
2973 6655 7.811282 ACACCCATATGTAGTCCATATTGAAA 58.189 34.615 1.24 0.00 42.87 2.69
2974 6656 8.278639 ACACCCATATGTAGTCCATATTGAAAA 58.721 33.333 1.24 0.00 42.87 2.29
2975 6657 9.300681 CACCCATATGTAGTCCATATTGAAAAT 57.699 33.333 1.24 0.00 42.87 1.82
2976 6658 9.520515 ACCCATATGTAGTCCATATTGAAAATC 57.479 33.333 1.24 0.00 42.87 2.17
2977 6659 9.745018 CCCATATGTAGTCCATATTGAAAATCT 57.255 33.333 1.24 0.00 42.87 2.40
3006 6688 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
3007 6689 7.672122 AAGACTTATATTTAGGAACGGAGGT 57.328 36.000 0.00 0.00 0.00 3.85
3008 6690 8.773033 AAGACTTATATTTAGGAACGGAGGTA 57.227 34.615 0.00 0.00 0.00 3.08
3009 6691 8.406730 AGACTTATATTTAGGAACGGAGGTAG 57.593 38.462 0.00 0.00 0.00 3.18
3010 6692 8.003629 AGACTTATATTTAGGAACGGAGGTAGT 58.996 37.037 0.00 0.00 0.00 2.73
3011 6693 9.289782 GACTTATATTTAGGAACGGAGGTAGTA 57.710 37.037 0.00 0.00 0.00 1.82
3029 6711 9.360093 GAGGTAGTATTATCATGCACTTACATC 57.640 37.037 0.00 0.00 0.00 3.06
3125 6807 1.887956 GCATGACTGGAGGGAGCAAAA 60.888 52.381 0.00 0.00 0.00 2.44
3127 6809 2.978156 TGACTGGAGGGAGCAAAAAT 57.022 45.000 0.00 0.00 0.00 1.82
3145 6827 8.084684 AGCAAAAATTTCTAACTCATGGACTTC 58.915 33.333 0.00 0.00 0.00 3.01
3181 6863 2.105993 ACAGTTCCCAGAGGTTACCAAC 59.894 50.000 3.51 0.00 0.00 3.77
3529 7211 4.191544 CACACTCTTCTCCTTTGTTGTCA 58.808 43.478 0.00 0.00 0.00 3.58
3553 7235 1.476891 GAGACGACACAAGCCTCCATA 59.523 52.381 0.00 0.00 0.00 2.74
3605 7287 3.957497 ACCTGAAGTTGGTTGCAAATACA 59.043 39.130 0.00 0.00 33.34 2.29
3619 7301 7.367285 GTTGCAAATACAAAGACCATGTAGAA 58.633 34.615 0.00 0.00 36.75 2.10
3681 7364 8.466617 TTCTCCCTAGTGTATAGATTCACTTC 57.533 38.462 7.05 0.00 43.39 3.01
3746 7430 8.957028 CATGAGTTTTACTTTGTGTGTACAATG 58.043 33.333 0.00 0.00 45.56 2.82
3766 7450 1.382522 CTAGATTGGTGGCGCAATGT 58.617 50.000 10.83 0.89 0.00 2.71
3768 7452 1.139520 GATTGGTGGCGCAATGTCC 59.860 57.895 10.83 4.12 0.00 4.02
3776 7460 2.680841 GTGGCGCAATGTCCTTGTATAA 59.319 45.455 10.83 0.00 37.18 0.98
3777 7461 3.315191 GTGGCGCAATGTCCTTGTATAAT 59.685 43.478 10.83 0.00 37.18 1.28
3778 7462 3.951037 TGGCGCAATGTCCTTGTATAATT 59.049 39.130 10.83 0.00 37.18 1.40
3798 7482 3.701205 TTGTGCATGTACATCCTGTCT 57.299 42.857 17.69 0.00 0.00 3.41
3815 7499 2.232452 TGTCTGTTGTTTGTTTGGTGGG 59.768 45.455 0.00 0.00 0.00 4.61
3816 7500 2.232696 GTCTGTTGTTTGTTTGGTGGGT 59.767 45.455 0.00 0.00 0.00 4.51
3818 7502 4.082136 GTCTGTTGTTTGTTTGGTGGGTAA 60.082 41.667 0.00 0.00 0.00 2.85
3819 7503 4.527038 TCTGTTGTTTGTTTGGTGGGTAAA 59.473 37.500 0.00 0.00 0.00 2.01
3820 7504 5.011738 TCTGTTGTTTGTTTGGTGGGTAAAA 59.988 36.000 0.00 0.00 0.00 1.52
3821 7505 5.617252 TGTTGTTTGTTTGGTGGGTAAAAA 58.383 33.333 0.00 0.00 0.00 1.94
3847 7534 9.971922 AAGAAAAATACAAGTTTGAGATCCTTG 57.028 29.630 7.00 7.00 41.02 3.61
3863 7550 3.441101 TCCTTGTGAGTACATAGCCTGT 58.559 45.455 0.00 0.00 42.13 4.00
3864 7551 3.447586 TCCTTGTGAGTACATAGCCTGTC 59.552 47.826 0.00 0.00 39.39 3.51
3869 7556 5.201243 TGTGAGTACATAGCCTGTCTGTAT 58.799 41.667 0.00 0.00 39.39 2.29
3880 7567 4.702131 AGCCTGTCTGTATCAACAAAATCC 59.298 41.667 0.00 0.00 34.49 3.01
3881 7568 4.458989 GCCTGTCTGTATCAACAAAATCCA 59.541 41.667 0.00 0.00 34.49 3.41
3882 7569 5.392380 GCCTGTCTGTATCAACAAAATCCAG 60.392 44.000 0.00 0.00 34.49 3.86
3883 7570 5.939883 CCTGTCTGTATCAACAAAATCCAGA 59.060 40.000 0.00 0.00 34.49 3.86
3884 7571 6.600822 CCTGTCTGTATCAACAAAATCCAGAT 59.399 38.462 0.00 0.00 34.49 2.90
3885 7572 7.381766 TGTCTGTATCAACAAAATCCAGATG 57.618 36.000 0.00 0.00 34.49 2.90
3886 7573 7.167535 TGTCTGTATCAACAAAATCCAGATGA 58.832 34.615 0.00 0.00 34.49 2.92
3887 7574 7.335171 TGTCTGTATCAACAAAATCCAGATGAG 59.665 37.037 0.00 0.00 34.49 2.90
3888 7575 6.317140 TCTGTATCAACAAAATCCAGATGAGC 59.683 38.462 0.00 0.00 34.49 4.26
3889 7576 6.182627 TGTATCAACAAAATCCAGATGAGCT 58.817 36.000 0.00 0.00 30.91 4.09
3890 7577 5.578005 ATCAACAAAATCCAGATGAGCTG 57.422 39.130 0.00 0.00 44.49 4.24
3900 7587 1.068055 CAGATGAGCTGGTTTGGTTGC 60.068 52.381 0.00 0.00 41.07 4.17
3901 7588 0.244721 GATGAGCTGGTTTGGTTGCC 59.755 55.000 0.00 0.00 0.00 4.52
3902 7589 1.187567 ATGAGCTGGTTTGGTTGCCC 61.188 55.000 0.00 0.00 0.00 5.36
3903 7590 2.912025 AGCTGGTTTGGTTGCCCG 60.912 61.111 0.00 0.00 0.00 6.13
3904 7591 4.662961 GCTGGTTTGGTTGCCCGC 62.663 66.667 0.00 0.00 0.00 6.13
3905 7592 2.912025 CTGGTTTGGTTGCCCGCT 60.912 61.111 0.00 0.00 0.00 5.52
3906 7593 2.443016 TGGTTTGGTTGCCCGCTT 60.443 55.556 0.00 0.00 0.00 4.68
3907 7594 2.028925 GGTTTGGTTGCCCGCTTG 59.971 61.111 0.00 0.00 0.00 4.01
3908 7595 2.494530 GGTTTGGTTGCCCGCTTGA 61.495 57.895 0.00 0.00 0.00 3.02
3909 7596 1.299850 GTTTGGTTGCCCGCTTGAC 60.300 57.895 0.00 0.00 0.00 3.18
3910 7597 1.454847 TTTGGTTGCCCGCTTGACT 60.455 52.632 0.00 0.00 0.00 3.41
3911 7598 1.040339 TTTGGTTGCCCGCTTGACTT 61.040 50.000 0.00 0.00 0.00 3.01
3926 7613 6.092122 CCGCTTGACTTACAGTTCATAAATGA 59.908 38.462 0.00 0.00 34.44 2.57
3946 7633 4.865905 TGACCAACATTATAAGGGCATGT 58.134 39.130 1.74 0.00 33.27 3.21
4019 7706 4.351874 TCAGTTTCCATCGTCTCCTTTT 57.648 40.909 0.00 0.00 0.00 2.27
4020 7707 4.714632 TCAGTTTCCATCGTCTCCTTTTT 58.285 39.130 0.00 0.00 0.00 1.94
4058 7745 2.356665 TTGCTTTCAGCTTGGGTGTA 57.643 45.000 0.00 0.00 42.97 2.90
4071 7758 5.957774 AGCTTGGGTGTAATTTGGATAATGT 59.042 36.000 0.00 0.00 0.00 2.71
4073 7760 7.285401 AGCTTGGGTGTAATTTGGATAATGTAG 59.715 37.037 0.00 0.00 0.00 2.74
4077 7764 7.990886 TGGGTGTAATTTGGATAATGTAGAGAC 59.009 37.037 0.00 0.00 0.00 3.36
4087 7774 9.987272 TTGGATAATGTAGAGACTGATGTATTG 57.013 33.333 0.00 0.00 0.00 1.90
4093 7780 7.089770 TGTAGAGACTGATGTATTGTCTGTC 57.910 40.000 0.00 5.38 40.63 3.51
4097 7784 6.206395 AGACTGATGTATTGTCTGTCTCAG 57.794 41.667 9.07 0.00 45.74 3.35
4098 7785 4.753233 ACTGATGTATTGTCTGTCTCAGC 58.247 43.478 0.00 0.00 33.61 4.26
4099 7786 4.221482 ACTGATGTATTGTCTGTCTCAGCA 59.779 41.667 0.00 0.00 33.61 4.41
4100 7787 5.151297 TGATGTATTGTCTGTCTCAGCAA 57.849 39.130 8.23 8.23 34.25 3.91
4140 7827 6.546403 CCATAGCAGGTGTTCTTCTACTACTA 59.454 42.308 0.00 0.00 0.00 1.82
4191 7878 1.385528 TGTCTGCATCACCATCATGC 58.614 50.000 0.00 0.00 45.92 4.06
4195 7882 1.281960 GCATCACCATCATGCGAGC 59.718 57.895 0.00 0.00 37.51 5.03
4209 7896 3.706373 GAGCAGCTCCCCGTGGAA 61.706 66.667 11.84 0.00 41.17 3.53
4210 7897 3.672295 GAGCAGCTCCCCGTGGAAG 62.672 68.421 11.84 0.00 41.17 3.46
4212 7899 3.068881 CAGCTCCCCGTGGAAGAA 58.931 61.111 0.00 0.00 41.17 2.52
4215 7902 2.291043 GCTCCCCGTGGAAGAAGGA 61.291 63.158 0.00 0.00 41.17 3.36
4336 8024 7.366011 CCATCACTATACCTTCCCTTCTCTTTT 60.366 40.741 0.00 0.00 0.00 2.27
4337 8025 6.947464 TCACTATACCTTCCCTTCTCTTTTG 58.053 40.000 0.00 0.00 0.00 2.44
4344 8032 1.253593 CCCTTCTCTTTTGCCCCTGC 61.254 60.000 0.00 0.00 38.26 4.85
4345 8033 1.589716 CCTTCTCTTTTGCCCCTGCG 61.590 60.000 0.00 0.00 41.78 5.18
4373 8061 0.323178 CCAATGGCAGCTCTCCTTGT 60.323 55.000 0.00 0.00 0.00 3.16
4374 8062 1.065199 CCAATGGCAGCTCTCCTTGTA 60.065 52.381 0.00 0.00 0.00 2.41
4375 8063 2.618816 CCAATGGCAGCTCTCCTTGTAA 60.619 50.000 0.00 0.00 0.00 2.41
4376 8064 3.084039 CAATGGCAGCTCTCCTTGTAAA 58.916 45.455 0.00 0.00 0.00 2.01
4389 8077 3.764885 CTTGTAAAGGTGCATAGTGGC 57.235 47.619 0.00 0.00 41.27 5.01
4390 8078 2.869101 TGTAAAGGTGCATAGTGGCA 57.131 45.000 0.00 0.00 42.53 4.92
4397 8085 3.269578 TGCATAGTGGCACTGCATT 57.730 47.368 29.65 9.21 40.75 3.56
4398 8086 0.812549 TGCATAGTGGCACTGCATTG 59.187 50.000 29.65 20.29 40.75 2.82
4399 8087 0.526954 GCATAGTGGCACTGCATTGC 60.527 55.000 29.65 24.99 42.18 3.56
4400 8088 1.100510 CATAGTGGCACTGCATTGCT 58.899 50.000 29.65 11.16 42.56 3.91
4401 8089 1.100510 ATAGTGGCACTGCATTGCTG 58.899 50.000 29.65 13.31 42.56 4.41
4410 8098 3.794270 GCATTGCTGCTGCCATTG 58.206 55.556 13.47 8.82 45.32 2.82
4411 8099 1.813753 GCATTGCTGCTGCCATTGG 60.814 57.895 13.47 0.00 45.32 3.16
4412 8100 1.894512 CATTGCTGCTGCCATTGGA 59.105 52.632 13.47 0.00 38.71 3.53
4413 8101 0.179111 CATTGCTGCTGCCATTGGAG 60.179 55.000 13.47 2.43 38.71 3.86
4414 8102 1.956629 ATTGCTGCTGCCATTGGAGC 61.957 55.000 13.47 12.75 46.71 4.70
4415 8103 4.189188 GCTGCTGCCATTGGAGCG 62.189 66.667 6.95 9.79 38.94 5.03
4416 8104 3.515286 CTGCTGCCATTGGAGCGG 61.515 66.667 6.95 13.20 38.09 5.52
4417 8105 4.349503 TGCTGCCATTGGAGCGGT 62.350 61.111 6.95 0.00 38.92 5.68
4418 8106 3.512516 GCTGCCATTGGAGCGGTC 61.513 66.667 6.95 5.93 38.92 4.79
4419 8107 2.825836 CTGCCATTGGAGCGGTCC 60.826 66.667 26.70 26.70 44.24 4.46
4428 8116 2.911143 GAGCGGTCCATGGTCCAT 59.089 61.111 25.10 14.40 0.00 3.41
4429 8117 1.524621 GAGCGGTCCATGGTCCATG 60.525 63.158 25.10 23.11 41.10 3.66
4430 8118 3.211963 GCGGTCCATGGTCCATGC 61.212 66.667 24.42 17.89 40.20 4.06
4431 8119 2.271821 CGGTCCATGGTCCATGCA 59.728 61.111 24.42 9.05 40.20 3.96
4432 8120 1.152902 CGGTCCATGGTCCATGCAT 60.153 57.895 24.42 0.00 40.20 3.96
4433 8121 1.449726 CGGTCCATGGTCCATGCATG 61.450 60.000 24.42 20.19 40.20 4.06
4434 8122 1.737816 GTCCATGGTCCATGCATGC 59.262 57.895 24.42 11.82 40.20 4.06
4435 8123 1.038681 GTCCATGGTCCATGCATGCA 61.039 55.000 25.04 25.04 40.20 3.96
4436 8124 0.753848 TCCATGGTCCATGCATGCAG 60.754 55.000 26.69 16.97 40.20 4.41
4437 8125 0.753848 CCATGGTCCATGCATGCAGA 60.754 55.000 26.69 15.90 40.20 4.26
4438 8126 1.107945 CATGGTCCATGCATGCAGAA 58.892 50.000 26.69 10.85 35.02 3.02
4439 8127 1.478916 CATGGTCCATGCATGCAGAAA 59.521 47.619 26.69 10.47 35.02 2.52
4440 8128 1.855295 TGGTCCATGCATGCAGAAAT 58.145 45.000 26.69 6.06 0.00 2.17
4441 8129 1.478916 TGGTCCATGCATGCAGAAATG 59.521 47.619 26.69 18.41 0.00 2.32
4442 8130 1.752498 GGTCCATGCATGCAGAAATGA 59.248 47.619 26.69 13.91 0.00 2.57
4443 8131 2.480759 GGTCCATGCATGCAGAAATGAC 60.481 50.000 26.69 22.86 0.00 3.06
4444 8132 1.752498 TCCATGCATGCAGAAATGACC 59.248 47.619 26.69 0.00 0.00 4.02
4445 8133 1.535226 CCATGCATGCAGAAATGACCG 60.535 52.381 26.69 3.17 0.00 4.79
4446 8134 0.742505 ATGCATGCAGAAATGACCGG 59.257 50.000 26.69 0.00 0.00 5.28
4447 8135 1.226773 GCATGCAGAAATGACCGGC 60.227 57.895 14.21 0.00 0.00 6.13
4448 8136 1.660560 GCATGCAGAAATGACCGGCT 61.661 55.000 14.21 0.00 0.00 5.52
4449 8137 0.099968 CATGCAGAAATGACCGGCTG 59.900 55.000 0.00 0.00 0.00 4.85
4450 8138 0.322816 ATGCAGAAATGACCGGCTGT 60.323 50.000 0.00 0.00 0.00 4.40
4451 8139 0.537143 TGCAGAAATGACCGGCTGTT 60.537 50.000 0.00 0.00 0.00 3.16
4452 8140 0.109597 GCAGAAATGACCGGCTGTTG 60.110 55.000 0.00 0.00 0.00 3.33
4453 8141 1.522668 CAGAAATGACCGGCTGTTGA 58.477 50.000 0.00 0.00 0.00 3.18
4454 8142 2.086869 CAGAAATGACCGGCTGTTGAT 58.913 47.619 0.00 0.00 0.00 2.57
4455 8143 2.086869 AGAAATGACCGGCTGTTGATG 58.913 47.619 0.00 0.00 0.00 3.07
4456 8144 2.083774 GAAATGACCGGCTGTTGATGA 58.916 47.619 0.00 0.00 0.00 2.92
4457 8145 1.742761 AATGACCGGCTGTTGATGAG 58.257 50.000 0.00 0.00 0.00 2.90
4458 8146 0.904649 ATGACCGGCTGTTGATGAGA 59.095 50.000 0.00 0.00 0.00 3.27
4459 8147 0.684535 TGACCGGCTGTTGATGAGAA 59.315 50.000 0.00 0.00 0.00 2.87
4460 8148 1.338105 TGACCGGCTGTTGATGAGAAG 60.338 52.381 0.00 0.00 0.00 2.85
4461 8149 0.674895 ACCGGCTGTTGATGAGAAGC 60.675 55.000 0.00 0.00 34.86 3.86
4462 8150 0.392193 CCGGCTGTTGATGAGAAGCT 60.392 55.000 0.00 0.00 35.93 3.74
4463 8151 0.725686 CGGCTGTTGATGAGAAGCTG 59.274 55.000 0.00 0.00 35.93 4.24
4464 8152 1.093159 GGCTGTTGATGAGAAGCTGG 58.907 55.000 0.00 0.00 35.93 4.85
4465 8153 0.450983 GCTGTTGATGAGAAGCTGGC 59.549 55.000 0.00 0.00 32.82 4.85
4466 8154 1.817357 CTGTTGATGAGAAGCTGGCA 58.183 50.000 0.00 0.00 0.00 4.92
4467 8155 2.366533 CTGTTGATGAGAAGCTGGCAT 58.633 47.619 0.00 0.00 0.00 4.40
4468 8156 3.538591 CTGTTGATGAGAAGCTGGCATA 58.461 45.455 0.00 0.00 0.00 3.14
4469 8157 4.135306 CTGTTGATGAGAAGCTGGCATAT 58.865 43.478 0.00 0.00 0.00 1.78
4470 8158 3.881089 TGTTGATGAGAAGCTGGCATATG 59.119 43.478 0.00 0.00 0.00 1.78
4471 8159 4.132336 GTTGATGAGAAGCTGGCATATGA 58.868 43.478 6.97 0.00 0.00 2.15
4472 8160 4.004196 TGATGAGAAGCTGGCATATGAG 57.996 45.455 6.97 0.00 0.00 2.90
4473 8161 3.390311 TGATGAGAAGCTGGCATATGAGT 59.610 43.478 6.97 0.00 0.00 3.41
4474 8162 3.189618 TGAGAAGCTGGCATATGAGTG 57.810 47.619 6.97 0.00 0.00 3.51
4475 8163 2.767960 TGAGAAGCTGGCATATGAGTGA 59.232 45.455 6.97 0.00 0.00 3.41
4476 8164 3.181468 TGAGAAGCTGGCATATGAGTGAG 60.181 47.826 6.97 0.00 0.00 3.51
4477 8165 2.104451 AGAAGCTGGCATATGAGTGAGG 59.896 50.000 6.97 0.00 0.00 3.86
4478 8166 1.798626 AGCTGGCATATGAGTGAGGA 58.201 50.000 6.97 0.00 0.00 3.71
4479 8167 1.693062 AGCTGGCATATGAGTGAGGAG 59.307 52.381 6.97 0.00 0.00 3.69
4480 8168 1.690893 GCTGGCATATGAGTGAGGAGA 59.309 52.381 6.97 0.00 0.00 3.71
4481 8169 2.302445 GCTGGCATATGAGTGAGGAGAT 59.698 50.000 6.97 0.00 0.00 2.75
4482 8170 3.865302 GCTGGCATATGAGTGAGGAGATG 60.865 52.174 6.97 0.00 0.00 2.90
4483 8171 2.636403 TGGCATATGAGTGAGGAGATGG 59.364 50.000 6.97 0.00 0.00 3.51
4484 8172 2.902486 GGCATATGAGTGAGGAGATGGA 59.098 50.000 6.97 0.00 0.00 3.41
4485 8173 3.306641 GGCATATGAGTGAGGAGATGGAC 60.307 52.174 6.97 0.00 0.00 4.02
4486 8174 3.306641 GCATATGAGTGAGGAGATGGACC 60.307 52.174 6.97 0.00 0.00 4.46
4487 8175 2.557555 ATGAGTGAGGAGATGGACCA 57.442 50.000 0.00 0.00 0.00 4.02
4488 8176 2.557555 TGAGTGAGGAGATGGACCAT 57.442 50.000 6.71 6.71 0.00 3.55
4489 8177 2.837947 TGAGTGAGGAGATGGACCATT 58.162 47.619 8.78 0.00 0.00 3.16
4490 8178 2.502947 TGAGTGAGGAGATGGACCATTG 59.497 50.000 8.78 0.00 0.00 2.82
4491 8179 1.842562 AGTGAGGAGATGGACCATTGG 59.157 52.381 8.78 0.00 0.00 3.16
4492 8180 1.561542 GTGAGGAGATGGACCATTGGT 59.438 52.381 8.42 8.42 39.44 3.67
4502 8190 2.403252 GACCATTGGTCCTGGTACTG 57.597 55.000 23.00 0.00 46.95 2.74
4503 8191 0.991920 ACCATTGGTCCTGGTACTGG 59.008 55.000 1.37 0.00 45.17 4.00
4504 8192 1.768725 ACCATTGGTCCTGGTACTGGT 60.769 52.381 1.37 0.00 45.17 4.00
4505 8193 3.951602 ACCATTGGTCCTGGTACTGGTG 61.952 54.545 1.37 0.00 45.17 4.17
4511 8199 2.858622 CCTGGTACTGGTGTGCATG 58.141 57.895 0.00 0.00 42.87 4.06
4512 8200 0.677731 CCTGGTACTGGTGTGCATGG 60.678 60.000 0.00 0.00 42.87 3.66
4513 8201 0.036732 CTGGTACTGGTGTGCATGGT 59.963 55.000 0.00 0.00 0.00 3.55
4514 8202 0.250684 TGGTACTGGTGTGCATGGTG 60.251 55.000 0.00 0.00 0.00 4.17
4515 8203 0.036164 GGTACTGGTGTGCATGGTGA 59.964 55.000 0.00 0.00 0.00 4.02
4516 8204 1.340017 GGTACTGGTGTGCATGGTGAT 60.340 52.381 0.00 0.00 0.00 3.06
4517 8205 2.009774 GTACTGGTGTGCATGGTGATC 58.990 52.381 0.00 0.00 0.00 2.92
4518 8206 0.401356 ACTGGTGTGCATGGTGATCA 59.599 50.000 0.00 0.00 0.00 2.92
4519 8207 1.005097 ACTGGTGTGCATGGTGATCAT 59.995 47.619 0.00 0.00 36.31 2.45
4520 8208 1.674441 CTGGTGTGCATGGTGATCATC 59.326 52.381 0.00 0.00 32.92 2.92
4521 8209 1.004511 TGGTGTGCATGGTGATCATCA 59.995 47.619 11.92 11.92 32.92 3.07
4522 8210 2.093890 GGTGTGCATGGTGATCATCAA 58.906 47.619 13.76 0.00 32.92 2.57
4523 8211 2.159338 GGTGTGCATGGTGATCATCAAC 60.159 50.000 13.76 7.55 33.88 3.18
4524 8212 2.751259 GTGTGCATGGTGATCATCAACT 59.249 45.455 13.76 0.00 34.53 3.16
4525 8213 3.940852 GTGTGCATGGTGATCATCAACTA 59.059 43.478 13.76 0.00 34.53 2.24
4526 8214 4.395854 GTGTGCATGGTGATCATCAACTAA 59.604 41.667 13.76 0.00 34.53 2.24
4527 8215 4.395854 TGTGCATGGTGATCATCAACTAAC 59.604 41.667 13.76 9.71 34.53 2.34
4528 8216 4.637534 GTGCATGGTGATCATCAACTAACT 59.362 41.667 13.76 0.00 34.53 2.24
4529 8217 5.817296 GTGCATGGTGATCATCAACTAACTA 59.183 40.000 13.76 0.00 34.53 2.24
4530 8218 6.316140 GTGCATGGTGATCATCAACTAACTAA 59.684 38.462 13.76 0.00 34.53 2.24
4531 8219 7.012704 GTGCATGGTGATCATCAACTAACTAAT 59.987 37.037 13.76 0.00 34.53 1.73
4532 8220 7.227314 TGCATGGTGATCATCAACTAACTAATC 59.773 37.037 13.76 0.00 34.53 1.75
4533 8221 7.227314 GCATGGTGATCATCAACTAACTAATCA 59.773 37.037 13.76 0.00 34.53 2.57
4534 8222 9.112725 CATGGTGATCATCAACTAACTAATCAA 57.887 33.333 13.76 0.00 34.53 2.57
4535 8223 9.857656 ATGGTGATCATCAACTAACTAATCAAT 57.142 29.630 13.76 0.00 34.53 2.57
4536 8224 9.112725 TGGTGATCATCAACTAACTAATCAATG 57.887 33.333 6.09 0.00 34.53 2.82
4537 8225 9.113838 GGTGATCATCAACTAACTAATCAATGT 57.886 33.333 0.00 0.00 29.71 2.71
4547 8235 9.979578 AACTAACTAATCAATGTTTCAAATGCA 57.020 25.926 0.00 0.00 0.00 3.96
4550 8238 7.837202 ACTAATCAATGTTTCAAATGCATGG 57.163 32.000 0.00 0.00 0.00 3.66
4551 8239 7.613585 ACTAATCAATGTTTCAAATGCATGGA 58.386 30.769 0.00 0.00 0.00 3.41
4552 8240 8.262227 ACTAATCAATGTTTCAAATGCATGGAT 58.738 29.630 0.00 0.00 35.46 3.41
4553 8241 7.931578 AATCAATGTTTCAAATGCATGGATT 57.068 28.000 6.63 6.63 38.03 3.01
4555 8243 7.830940 TCAATGTTTCAAATGCATGGATTAC 57.169 32.000 13.27 8.12 0.00 1.89
4556 8244 7.613585 TCAATGTTTCAAATGCATGGATTACT 58.386 30.769 13.27 0.00 0.00 2.24
4557 8245 7.546316 TCAATGTTTCAAATGCATGGATTACTG 59.454 33.333 13.27 8.91 0.00 2.74
4558 8246 6.587206 TGTTTCAAATGCATGGATTACTGA 57.413 33.333 13.27 11.13 0.00 3.41
4559 8247 6.389091 TGTTTCAAATGCATGGATTACTGAC 58.611 36.000 13.27 10.31 0.00 3.51
4560 8248 4.880886 TCAAATGCATGGATTACTGACG 57.119 40.909 13.27 0.00 0.00 4.35
4561 8249 4.512484 TCAAATGCATGGATTACTGACGA 58.488 39.130 13.27 1.24 0.00 4.20
4562 8250 4.940654 TCAAATGCATGGATTACTGACGAA 59.059 37.500 13.27 0.00 0.00 3.85
4563 8251 5.065090 TCAAATGCATGGATTACTGACGAAG 59.935 40.000 13.27 0.00 0.00 3.79
4564 8252 2.279741 TGCATGGATTACTGACGAAGC 58.720 47.619 0.00 0.00 0.00 3.86
4565 8253 2.279741 GCATGGATTACTGACGAAGCA 58.720 47.619 0.00 0.00 0.00 3.91
4566 8254 2.677836 GCATGGATTACTGACGAAGCAA 59.322 45.455 0.00 0.00 0.00 3.91
4567 8255 3.126858 GCATGGATTACTGACGAAGCAAA 59.873 43.478 0.00 0.00 0.00 3.68
4568 8256 4.201950 GCATGGATTACTGACGAAGCAAAT 60.202 41.667 0.00 0.00 0.00 2.32
4569 8257 5.677091 GCATGGATTACTGACGAAGCAAATT 60.677 40.000 0.00 0.00 0.00 1.82
4570 8258 6.458206 GCATGGATTACTGACGAAGCAAATTA 60.458 38.462 0.00 0.00 0.00 1.40
4571 8259 7.471721 CATGGATTACTGACGAAGCAAATTAA 58.528 34.615 0.00 0.00 0.00 1.40
4572 8260 7.624360 TGGATTACTGACGAAGCAAATTAAT 57.376 32.000 0.00 0.00 0.00 1.40
4573 8261 7.693952 TGGATTACTGACGAAGCAAATTAATC 58.306 34.615 0.00 0.00 0.00 1.75
4574 8262 7.132863 GGATTACTGACGAAGCAAATTAATCC 58.867 38.462 0.00 0.00 34.54 3.01
4575 8263 4.600012 ACTGACGAAGCAAATTAATCCG 57.400 40.909 0.00 0.00 0.00 4.18
4576 8264 3.181510 ACTGACGAAGCAAATTAATCCGC 60.182 43.478 0.00 1.70 0.00 5.54
4577 8265 2.744741 TGACGAAGCAAATTAATCCGCA 59.255 40.909 10.64 0.00 0.00 5.69
4578 8266 3.181511 TGACGAAGCAAATTAATCCGCAG 60.182 43.478 10.64 5.29 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 152 8.300286 TCAACATTTCAAATAAACTATTCGGCA 58.700 29.630 0.00 0.00 0.00 5.69
198 199 1.451028 GGTCAGAGCTCCATGCCAC 60.451 63.158 10.93 0.00 44.23 5.01
204 205 6.721318 ACTTTAATAAATGGTCAGAGCTCCA 58.279 36.000 10.93 1.40 38.14 3.86
214 215 6.404293 CGGCTGCTACAACTTTAATAAATGGT 60.404 38.462 0.00 0.00 0.00 3.55
266 267 6.880942 ATGGTACTTTTTAAAAGTGCGGTA 57.119 33.333 27.26 17.59 34.34 4.02
352 355 7.231519 ACATATCTAACTACTACATCAGCAGCA 59.768 37.037 0.00 0.00 0.00 4.41
381 384 6.422344 ACATGCATAGAGTTCTCATCAGAT 57.578 37.500 0.00 0.00 0.00 2.90
533 614 3.493129 TGACTACGTGCAGTGCTAAAAAG 59.507 43.478 17.60 9.69 0.00 2.27
535 616 2.798283 GTGACTACGTGCAGTGCTAAAA 59.202 45.455 17.60 0.00 0.00 1.52
544 625 3.117794 GTGTAAACTGTGACTACGTGCA 58.882 45.455 0.00 0.00 0.00 4.57
666 751 3.161866 GCTCCCACCCTTTCATTGTTTA 58.838 45.455 0.00 0.00 0.00 2.01
671 756 1.005215 CAGAGCTCCCACCCTTTCATT 59.995 52.381 10.93 0.00 0.00 2.57
673 758 2.069776 CAGAGCTCCCACCCTTTCA 58.930 57.895 10.93 0.00 0.00 2.69
701 786 1.786582 GCAACTCTGCTTCTGCGAG 59.213 57.895 0.00 0.00 45.74 5.03
741 826 0.535335 TAGCTAGGTGGTTTGAGCCG 59.465 55.000 4.27 0.00 35.45 5.52
828 4503 7.618019 ATTATACTGAATGAGCCCTTCTACA 57.382 36.000 0.00 0.00 0.00 2.74
948 4625 6.751514 TGCCGTTGTCAGTTCAATAAATAT 57.248 33.333 0.00 0.00 0.00 1.28
2005 5683 2.779429 TATTATGGGACGGTGGGAGA 57.221 50.000 0.00 0.00 0.00 3.71
2047 5725 7.803842 CGTCCCATAATATAAGACGTTGAGCG 61.804 46.154 13.04 0.00 43.89 5.03
2053 5731 4.461781 CCTCCGTCCCATAATATAAGACGT 59.538 45.833 17.31 0.00 46.62 4.34
2080 5758 7.024768 GCACACAGTACAAAACAAAGAAACTA 58.975 34.615 0.00 0.00 0.00 2.24
2157 5835 7.235079 TGTGAAAGATTCTTTTGGGGTGTATA 58.765 34.615 12.73 0.00 0.00 1.47
2310 5988 6.017357 CCAAGTAACCTCTGTGAAGTAAAACC 60.017 42.308 0.00 0.00 0.00 3.27
2346 6024 0.389817 TCACTTGTCCTCGAATGGCG 60.390 55.000 0.00 0.00 42.69 5.69
2548 6228 7.339482 GTTCTTATATTATGGGATGGAGGGAC 58.661 42.308 0.00 0.00 0.00 4.46
2601 6281 4.813027 TCCGTCCCATAATATAAGAACGC 58.187 43.478 0.00 0.00 0.00 4.84
2708 6389 6.647334 TTTATGCACTCCAAATTTCTGACA 57.353 33.333 0.00 0.00 0.00 3.58
2861 6543 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2862 6544 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2863 6545 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2864 6546 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2867 6549 9.694137 CCTAGAAAGACTTATATTTAGGAACGG 57.306 37.037 0.00 0.00 0.00 4.44
2868 6550 9.694137 CCCTAGAAAGACTTATATTTAGGAACG 57.306 37.037 4.32 0.00 0.00 3.95
2881 6563 9.676129 TCCATATTAGAATCCCTAGAAAGACTT 57.324 33.333 0.00 0.00 0.00 3.01
2882 6564 9.095700 GTCCATATTAGAATCCCTAGAAAGACT 57.904 37.037 0.00 0.00 0.00 3.24
2883 6565 9.095700 AGTCCATATTAGAATCCCTAGAAAGAC 57.904 37.037 0.00 0.00 0.00 3.01
2886 6568 9.892444 TGTAGTCCATATTAGAATCCCTAGAAA 57.108 33.333 0.00 0.00 0.00 2.52
2888 6570 9.702253 GATGTAGTCCATATTAGAATCCCTAGA 57.298 37.037 0.00 0.00 32.56 2.43
2889 6571 8.919145 GGATGTAGTCCATATTAGAATCCCTAG 58.081 40.741 0.00 0.00 46.96 3.02
2890 6572 8.840200 GGATGTAGTCCATATTAGAATCCCTA 57.160 38.462 0.00 0.00 46.96 3.53
2891 6573 7.741554 GGATGTAGTCCATATTAGAATCCCT 57.258 40.000 0.00 0.00 46.96 4.20
2905 6587 2.007608 GTTTTGCTCCGGATGTAGTCC 58.992 52.381 3.57 0.00 44.10 3.85
2906 6588 1.659098 CGTTTTGCTCCGGATGTAGTC 59.341 52.381 3.57 0.00 0.00 2.59
2907 6589 1.274167 TCGTTTTGCTCCGGATGTAGT 59.726 47.619 3.57 0.00 0.00 2.73
2908 6590 1.927174 CTCGTTTTGCTCCGGATGTAG 59.073 52.381 3.57 0.00 0.00 2.74
2909 6591 1.274167 ACTCGTTTTGCTCCGGATGTA 59.726 47.619 3.57 0.00 0.00 2.29
2910 6592 0.034896 ACTCGTTTTGCTCCGGATGT 59.965 50.000 3.57 0.00 0.00 3.06
2911 6593 0.443869 CACTCGTTTTGCTCCGGATG 59.556 55.000 3.57 0.00 0.00 3.51
2912 6594 0.320374 TCACTCGTTTTGCTCCGGAT 59.680 50.000 3.57 0.00 0.00 4.18
2913 6595 0.105224 TTCACTCGTTTTGCTCCGGA 59.895 50.000 2.93 2.93 0.00 5.14
2914 6596 1.128692 GATTCACTCGTTTTGCTCCGG 59.871 52.381 0.00 0.00 0.00 5.14
2915 6597 2.069273 AGATTCACTCGTTTTGCTCCG 58.931 47.619 0.00 0.00 0.00 4.63
2916 6598 3.994392 TGTAGATTCACTCGTTTTGCTCC 59.006 43.478 0.00 0.00 0.00 4.70
2917 6599 4.686554 AGTGTAGATTCACTCGTTTTGCTC 59.313 41.667 0.00 0.00 44.07 4.26
2918 6600 4.632153 AGTGTAGATTCACTCGTTTTGCT 58.368 39.130 0.00 0.00 44.07 3.91
2919 6601 4.992381 AGTGTAGATTCACTCGTTTTGC 57.008 40.909 0.00 0.00 44.07 3.68
2928 6610 7.034397 GGGTGTAGTTTAGAGTGTAGATTCAC 58.966 42.308 0.00 0.00 38.46 3.18
2929 6611 6.722590 TGGGTGTAGTTTAGAGTGTAGATTCA 59.277 38.462 0.00 0.00 0.00 2.57
2930 6612 7.166691 TGGGTGTAGTTTAGAGTGTAGATTC 57.833 40.000 0.00 0.00 0.00 2.52
2931 6613 7.735326 ATGGGTGTAGTTTAGAGTGTAGATT 57.265 36.000 0.00 0.00 0.00 2.40
2932 6614 8.861086 CATATGGGTGTAGTTTAGAGTGTAGAT 58.139 37.037 0.00 0.00 0.00 1.98
2933 6615 7.837689 ACATATGGGTGTAGTTTAGAGTGTAGA 59.162 37.037 7.80 0.00 0.00 2.59
2934 6616 8.008513 ACATATGGGTGTAGTTTAGAGTGTAG 57.991 38.462 7.80 0.00 0.00 2.74
2935 6617 7.966339 ACATATGGGTGTAGTTTAGAGTGTA 57.034 36.000 7.80 0.00 0.00 2.90
2936 6618 6.869206 ACATATGGGTGTAGTTTAGAGTGT 57.131 37.500 7.80 0.00 0.00 3.55
2980 6662 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2981 6663 8.202811 ACCTCCGTTCCTAAATATAAGTCTTTC 58.797 37.037 0.00 0.00 0.00 2.62
2982 6664 8.087303 ACCTCCGTTCCTAAATATAAGTCTTT 57.913 34.615 0.00 0.00 0.00 2.52
2983 6665 7.672122 ACCTCCGTTCCTAAATATAAGTCTT 57.328 36.000 0.00 0.00 0.00 3.01
2984 6666 8.003629 ACTACCTCCGTTCCTAAATATAAGTCT 58.996 37.037 0.00 0.00 0.00 3.24
2985 6667 8.175925 ACTACCTCCGTTCCTAAATATAAGTC 57.824 38.462 0.00 0.00 0.00 3.01
2986 6668 9.819754 ATACTACCTCCGTTCCTAAATATAAGT 57.180 33.333 0.00 0.00 0.00 2.24
2991 6673 9.812347 TGATAATACTACCTCCGTTCCTAAATA 57.188 33.333 0.00 0.00 0.00 1.40
2992 6674 8.716674 TGATAATACTACCTCCGTTCCTAAAT 57.283 34.615 0.00 0.00 0.00 1.40
2993 6675 8.582437 CATGATAATACTACCTCCGTTCCTAAA 58.418 37.037 0.00 0.00 0.00 1.85
2994 6676 7.309621 GCATGATAATACTACCTCCGTTCCTAA 60.310 40.741 0.00 0.00 0.00 2.69
2995 6677 6.152323 GCATGATAATACTACCTCCGTTCCTA 59.848 42.308 0.00 0.00 0.00 2.94
2996 6678 5.047235 GCATGATAATACTACCTCCGTTCCT 60.047 44.000 0.00 0.00 0.00 3.36
2997 6679 5.169295 GCATGATAATACTACCTCCGTTCC 58.831 45.833 0.00 0.00 0.00 3.62
2998 6680 5.634020 GTGCATGATAATACTACCTCCGTTC 59.366 44.000 0.00 0.00 0.00 3.95
2999 6681 5.304614 AGTGCATGATAATACTACCTCCGTT 59.695 40.000 0.00 0.00 0.00 4.44
3000 6682 4.833380 AGTGCATGATAATACTACCTCCGT 59.167 41.667 0.00 0.00 0.00 4.69
3001 6683 5.392767 AGTGCATGATAATACTACCTCCG 57.607 43.478 0.00 0.00 0.00 4.63
3002 6684 7.667557 TGTAAGTGCATGATAATACTACCTCC 58.332 38.462 0.00 0.00 0.00 4.30
3003 6685 9.360093 GATGTAAGTGCATGATAATACTACCTC 57.640 37.037 0.00 0.00 0.00 3.85
3004 6686 9.094578 AGATGTAAGTGCATGATAATACTACCT 57.905 33.333 0.00 0.00 0.00 3.08
3005 6687 9.712305 AAGATGTAAGTGCATGATAATACTACC 57.288 33.333 0.00 0.00 0.00 3.18
3011 6693 8.562892 GCAACTAAGATGTAAGTGCATGATAAT 58.437 33.333 0.00 0.00 0.00 1.28
3125 6807 8.160106 AGAACAGAAGTCCATGAGTTAGAAATT 58.840 33.333 0.00 0.00 0.00 1.82
3127 6809 7.067496 AGAACAGAAGTCCATGAGTTAGAAA 57.933 36.000 0.00 0.00 0.00 2.52
3145 6827 3.058639 GGAACTGTAGCAGCAAAGAACAG 60.059 47.826 0.00 2.94 42.53 3.16
3181 6863 1.078848 CTGCAAGAGGAGAACCCCG 60.079 63.158 0.00 0.00 34.74 5.73
3529 7211 0.753262 AGGCTTGTGTCGTCTCTTGT 59.247 50.000 0.00 0.00 0.00 3.16
3553 7235 3.313526 GCTCTGATATTGCGGTGAATGTT 59.686 43.478 0.00 0.00 0.00 2.71
3605 7287 7.281100 GCTATGCTACTTTTCTACATGGTCTTT 59.719 37.037 0.00 0.00 0.00 2.52
3619 7301 4.235372 AGGGTATCTGGCTATGCTACTTT 58.765 43.478 0.00 0.00 0.00 2.66
3660 7343 6.636562 ACGAAGTGAATCTATACACTAGGG 57.363 41.667 0.00 0.00 44.94 3.53
3681 7364 4.402583 CAATGCTGTGTACACCATAAACG 58.597 43.478 22.91 3.04 0.00 3.60
3746 7430 0.029834 CATTGCGCCACCAATCTAGC 59.970 55.000 4.18 0.00 33.35 3.42
3766 7450 7.929941 TGTACATGCACAAATTATACAAGGA 57.070 32.000 0.00 0.00 0.00 3.36
3768 7452 8.623903 AGGATGTACATGCACAAATTATACAAG 58.376 33.333 26.61 0.00 30.84 3.16
3798 7482 4.884668 TTTACCCACCAAACAAACAACA 57.115 36.364 0.00 0.00 0.00 3.33
3821 7505 9.971922 CAAGGATCTCAAACTTGTATTTTTCTT 57.028 29.630 0.00 0.00 37.43 2.52
3846 7533 3.431415 ACAGACAGGCTATGTACTCACA 58.569 45.455 0.00 0.00 44.17 3.58
3847 7534 5.299531 TGATACAGACAGGCTATGTACTCAC 59.700 44.000 8.13 3.46 44.17 3.51
3848 7535 5.445964 TGATACAGACAGGCTATGTACTCA 58.554 41.667 8.13 9.76 44.17 3.41
3863 7550 6.317140 GCTCATCTGGATTTTGTTGATACAGA 59.683 38.462 1.82 1.82 45.82 3.41
3864 7551 6.318144 AGCTCATCTGGATTTTGTTGATACAG 59.682 38.462 0.00 0.00 36.90 2.74
3880 7567 1.068055 GCAACCAAACCAGCTCATCTG 60.068 52.381 0.00 0.00 42.49 2.90
3881 7568 1.251251 GCAACCAAACCAGCTCATCT 58.749 50.000 0.00 0.00 0.00 2.90
3882 7569 0.244721 GGCAACCAAACCAGCTCATC 59.755 55.000 0.00 0.00 0.00 2.92
3883 7570 2.354902 GGCAACCAAACCAGCTCAT 58.645 52.632 0.00 0.00 0.00 2.90
3884 7571 3.854856 GGCAACCAAACCAGCTCA 58.145 55.556 0.00 0.00 0.00 4.26
3896 7583 0.517316 CTGTAAGTCAAGCGGGCAAC 59.483 55.000 0.00 0.00 0.00 4.17
3897 7584 2.927004 CTGTAAGTCAAGCGGGCAA 58.073 52.632 0.00 0.00 0.00 4.52
3898 7585 4.693532 CTGTAAGTCAAGCGGGCA 57.306 55.556 0.00 0.00 0.00 5.36
3907 7594 8.730680 ATGTTGGTCATTTATGAACTGTAAGTC 58.269 33.333 9.04 0.00 44.70 3.01
3908 7595 8.635765 ATGTTGGTCATTTATGAACTGTAAGT 57.364 30.769 9.04 0.00 44.70 2.24
3926 7613 4.649218 GGAACATGCCCTTATAATGTTGGT 59.351 41.667 6.20 0.00 42.90 3.67
3946 7633 1.303236 CATGGCAACGTCTGGGGAA 60.303 57.895 0.00 0.00 42.51 3.97
3993 7680 4.895889 AGGAGACGATGGAAACTGATCATA 59.104 41.667 0.00 0.00 0.00 2.15
4077 7764 4.752146 TGCTGAGACAGACAATACATCAG 58.248 43.478 2.81 0.00 36.60 2.90
4087 7774 1.297456 GCCTGCTTGCTGAGACAGAC 61.297 60.000 2.81 0.00 33.84 3.51
4091 7778 1.744741 GAGGCCTGCTTGCTGAGAC 60.745 63.158 12.00 0.00 0.00 3.36
4093 7780 2.438075 GGAGGCCTGCTTGCTGAG 60.438 66.667 18.47 0.00 0.00 3.35
4096 7783 4.737177 GCTGGAGGCCTGCTTGCT 62.737 66.667 25.93 0.00 43.62 3.91
4098 7785 3.060615 GTGCTGGAGGCCTGCTTG 61.061 66.667 25.93 18.19 46.43 4.01
4099 7786 4.357279 GGTGCTGGAGGCCTGCTT 62.357 66.667 25.93 0.00 46.43 3.91
4131 7818 6.541641 GCTTGCTTGGTAGTAGTAGTAGTAGA 59.458 42.308 0.00 0.00 0.00 2.59
4132 7819 6.318144 TGCTTGCTTGGTAGTAGTAGTAGTAG 59.682 42.308 0.00 0.00 0.00 2.57
4133 7820 6.182627 TGCTTGCTTGGTAGTAGTAGTAGTA 58.817 40.000 0.00 0.00 0.00 1.82
4140 7827 2.100605 GCTGCTTGCTTGGTAGTAGT 57.899 50.000 0.00 0.00 38.95 2.73
4171 7858 1.954382 GCATGATGGTGATGCAGACAT 59.046 47.619 0.00 0.00 44.74 3.06
4174 7861 0.178533 TCGCATGATGGTGATGCAGA 59.821 50.000 0.00 0.00 45.50 4.26
4192 7879 3.672295 CTTCCACGGGGAGCTGCTC 62.672 68.421 21.17 21.17 46.01 4.26
4195 7882 1.078848 CTTCTTCCACGGGGAGCTG 60.079 63.158 6.46 1.29 46.01 4.24
4204 7891 0.609406 GGCTGGGTTCCTTCTTCCAC 60.609 60.000 0.00 0.00 0.00 4.02
4205 7892 1.065410 TGGCTGGGTTCCTTCTTCCA 61.065 55.000 0.00 0.00 0.00 3.53
4207 7894 0.322906 CCTGGCTGGGTTCCTTCTTC 60.323 60.000 1.84 0.00 0.00 2.87
4209 7896 1.464198 ACCTGGCTGGGTTCCTTCT 60.464 57.895 15.36 0.00 41.11 2.85
4210 7897 1.303643 CACCTGGCTGGGTTCCTTC 60.304 63.158 15.36 0.00 41.11 3.46
4212 7899 3.971702 GCACCTGGCTGGGTTCCT 61.972 66.667 15.36 0.00 41.11 3.36
4242 7929 0.911769 TGGGATTACCTCACTGGCTG 59.088 55.000 0.00 0.00 41.11 4.85
4273 7961 4.008933 GAGGACACTGCCGTGCCT 62.009 66.667 18.93 18.93 45.10 4.75
4282 7970 2.284995 GGCAGAGGGGAGGACACT 60.285 66.667 0.00 0.00 0.00 3.55
4306 7994 3.967987 AGGGAAGGTATAGTGATGGTGAC 59.032 47.826 0.00 0.00 0.00 3.67
4380 8068 0.526954 GCAATGCAGTGCCACTATGC 60.527 55.000 27.88 11.73 38.66 3.14
4381 8069 1.100510 AGCAATGCAGTGCCACTATG 58.899 50.000 33.28 5.56 46.14 2.23
4382 8070 1.100510 CAGCAATGCAGTGCCACTAT 58.899 50.000 33.28 13.76 46.14 2.12
4383 8071 1.588824 GCAGCAATGCAGTGCCACTA 61.589 55.000 33.28 0.00 46.14 2.74
4384 8072 2.927580 GCAGCAATGCAGTGCCACT 61.928 57.895 33.28 14.56 46.14 4.00
4385 8073 2.431942 GCAGCAATGCAGTGCCAC 60.432 61.111 33.28 22.51 46.14 5.01
4386 8074 2.599281 AGCAGCAATGCAGTGCCA 60.599 55.556 33.28 0.69 46.14 4.92
4387 8075 2.126071 CAGCAGCAATGCAGTGCC 60.126 61.111 33.28 20.12 46.14 5.01
4388 8076 2.809601 GCAGCAGCAATGCAGTGC 60.810 61.111 30.52 30.52 43.31 4.40
4389 8077 2.126071 GGCAGCAGCAATGCAGTG 60.126 61.111 10.38 10.38 45.68 3.66
4390 8078 1.541310 AATGGCAGCAGCAATGCAGT 61.541 50.000 8.35 0.00 45.68 4.40
4391 8079 1.083806 CAATGGCAGCAGCAATGCAG 61.084 55.000 8.35 0.00 45.68 4.41
4392 8080 1.079474 CAATGGCAGCAGCAATGCA 60.079 52.632 8.35 0.00 45.68 3.96
4393 8081 1.813753 CCAATGGCAGCAGCAATGC 60.814 57.895 2.65 0.00 44.61 3.56
4394 8082 0.179111 CTCCAATGGCAGCAGCAATG 60.179 55.000 2.65 0.00 44.61 2.82
4395 8083 1.956629 GCTCCAATGGCAGCAGCAAT 61.957 55.000 15.50 0.00 44.61 3.56
4396 8084 2.642254 GCTCCAATGGCAGCAGCAA 61.642 57.895 15.50 0.00 44.61 3.91
4397 8085 3.066190 GCTCCAATGGCAGCAGCA 61.066 61.111 15.50 0.00 44.61 4.41
4398 8086 4.189188 CGCTCCAATGGCAGCAGC 62.189 66.667 18.74 11.30 35.15 5.25
4399 8087 3.515286 CCGCTCCAATGGCAGCAG 61.515 66.667 18.74 12.89 35.15 4.24
4400 8088 4.349503 ACCGCTCCAATGGCAGCA 62.350 61.111 18.74 0.00 35.15 4.41
4401 8089 3.512516 GACCGCTCCAATGGCAGC 61.513 66.667 11.87 11.87 0.00 5.25
4402 8090 2.825836 GGACCGCTCCAATGGCAG 60.826 66.667 0.00 0.00 36.42 4.85
4403 8091 3.645660 TGGACCGCTCCAATGGCA 61.646 61.111 0.00 0.00 44.26 4.92
4410 8098 2.746375 ATGGACCATGGACCGCTCC 61.746 63.158 25.23 18.06 37.04 4.70
4411 8099 1.524621 CATGGACCATGGACCGCTC 60.525 63.158 24.65 9.53 38.11 5.03
4412 8100 2.591753 CATGGACCATGGACCGCT 59.408 61.111 24.65 14.22 38.11 5.52
4413 8101 3.211963 GCATGGACCATGGACCGC 61.212 66.667 31.08 19.92 41.64 5.68
4414 8102 1.152902 ATGCATGGACCATGGACCG 60.153 57.895 31.08 14.73 44.27 4.79
4415 8103 1.741327 GCATGCATGGACCATGGACC 61.741 60.000 31.08 24.48 44.27 4.46
4416 8104 1.038681 TGCATGCATGGACCATGGAC 61.039 55.000 31.08 19.87 44.27 4.02
4417 8105 0.753848 CTGCATGCATGGACCATGGA 60.754 55.000 31.08 29.78 45.41 3.41
4418 8106 0.753848 TCTGCATGCATGGACCATGG 60.754 55.000 31.08 18.15 41.64 3.66
4419 8107 1.107945 TTCTGCATGCATGGACCATG 58.892 50.000 27.39 27.39 43.91 3.66
4420 8108 1.855295 TTTCTGCATGCATGGACCAT 58.145 45.000 27.34 0.00 0.00 3.55
4421 8109 1.478916 CATTTCTGCATGCATGGACCA 59.521 47.619 27.34 15.83 0.00 4.02
4422 8110 1.752498 TCATTTCTGCATGCATGGACC 59.248 47.619 27.34 11.97 0.00 4.46
4423 8111 2.480759 GGTCATTTCTGCATGCATGGAC 60.481 50.000 27.34 21.33 0.00 4.02
4424 8112 1.752498 GGTCATTTCTGCATGCATGGA 59.248 47.619 27.34 23.99 0.00 3.41
4425 8113 1.535226 CGGTCATTTCTGCATGCATGG 60.535 52.381 27.34 11.02 0.00 3.66
4426 8114 1.535226 CCGGTCATTTCTGCATGCATG 60.535 52.381 22.97 22.70 0.00 4.06
4427 8115 0.742505 CCGGTCATTTCTGCATGCAT 59.257 50.000 22.97 2.59 0.00 3.96
4428 8116 1.936436 GCCGGTCATTTCTGCATGCA 61.936 55.000 21.29 21.29 0.00 3.96
4429 8117 1.226773 GCCGGTCATTTCTGCATGC 60.227 57.895 11.82 11.82 0.00 4.06
4430 8118 0.099968 CAGCCGGTCATTTCTGCATG 59.900 55.000 1.90 0.00 0.00 4.06
4431 8119 0.322816 ACAGCCGGTCATTTCTGCAT 60.323 50.000 1.90 0.00 0.00 3.96
4432 8120 0.537143 AACAGCCGGTCATTTCTGCA 60.537 50.000 1.90 0.00 0.00 4.41
4433 8121 0.109597 CAACAGCCGGTCATTTCTGC 60.110 55.000 1.90 0.00 0.00 4.26
4434 8122 1.522668 TCAACAGCCGGTCATTTCTG 58.477 50.000 1.90 2.75 0.00 3.02
4435 8123 2.086869 CATCAACAGCCGGTCATTTCT 58.913 47.619 1.90 0.00 0.00 2.52
4436 8124 2.083774 TCATCAACAGCCGGTCATTTC 58.916 47.619 1.90 0.00 0.00 2.17
4437 8125 2.086869 CTCATCAACAGCCGGTCATTT 58.913 47.619 1.90 0.00 0.00 2.32
4438 8126 1.278985 TCTCATCAACAGCCGGTCATT 59.721 47.619 1.90 0.00 0.00 2.57
4439 8127 0.904649 TCTCATCAACAGCCGGTCAT 59.095 50.000 1.90 0.00 0.00 3.06
4440 8128 0.684535 TTCTCATCAACAGCCGGTCA 59.315 50.000 1.90 0.00 0.00 4.02
4441 8129 1.363744 CTTCTCATCAACAGCCGGTC 58.636 55.000 1.90 0.00 0.00 4.79
4442 8130 0.674895 GCTTCTCATCAACAGCCGGT 60.675 55.000 1.90 0.00 0.00 5.28
4443 8131 0.392193 AGCTTCTCATCAACAGCCGG 60.392 55.000 0.00 0.00 32.25 6.13
4444 8132 0.725686 CAGCTTCTCATCAACAGCCG 59.274 55.000 0.00 0.00 32.25 5.52
4445 8133 1.093159 CCAGCTTCTCATCAACAGCC 58.907 55.000 0.00 0.00 32.25 4.85
4446 8134 0.450983 GCCAGCTTCTCATCAACAGC 59.549 55.000 0.00 0.00 0.00 4.40
4447 8135 1.817357 TGCCAGCTTCTCATCAACAG 58.183 50.000 0.00 0.00 0.00 3.16
4448 8136 2.502142 ATGCCAGCTTCTCATCAACA 57.498 45.000 0.00 0.00 0.00 3.33
4449 8137 4.132336 TCATATGCCAGCTTCTCATCAAC 58.868 43.478 0.00 0.00 0.00 3.18
4450 8138 4.141551 ACTCATATGCCAGCTTCTCATCAA 60.142 41.667 0.00 0.00 0.00 2.57
4451 8139 3.390311 ACTCATATGCCAGCTTCTCATCA 59.610 43.478 0.00 0.00 0.00 3.07
4452 8140 3.747010 CACTCATATGCCAGCTTCTCATC 59.253 47.826 0.00 0.00 0.00 2.92
4453 8141 3.390311 TCACTCATATGCCAGCTTCTCAT 59.610 43.478 0.00 0.00 0.00 2.90
4454 8142 2.767960 TCACTCATATGCCAGCTTCTCA 59.232 45.455 0.00 0.00 0.00 3.27
4455 8143 3.391965 CTCACTCATATGCCAGCTTCTC 58.608 50.000 0.00 0.00 0.00 2.87
4456 8144 2.104451 CCTCACTCATATGCCAGCTTCT 59.896 50.000 0.00 0.00 0.00 2.85
4457 8145 2.103771 TCCTCACTCATATGCCAGCTTC 59.896 50.000 0.00 0.00 0.00 3.86
4458 8146 2.104451 CTCCTCACTCATATGCCAGCTT 59.896 50.000 0.00 0.00 0.00 3.74
4459 8147 1.693062 CTCCTCACTCATATGCCAGCT 59.307 52.381 0.00 0.00 0.00 4.24
4460 8148 1.690893 TCTCCTCACTCATATGCCAGC 59.309 52.381 0.00 0.00 0.00 4.85
4461 8149 3.306849 CCATCTCCTCACTCATATGCCAG 60.307 52.174 0.00 0.00 0.00 4.85
4462 8150 2.636403 CCATCTCCTCACTCATATGCCA 59.364 50.000 0.00 0.00 0.00 4.92
4463 8151 2.902486 TCCATCTCCTCACTCATATGCC 59.098 50.000 0.00 0.00 0.00 4.40
4464 8152 3.306641 GGTCCATCTCCTCACTCATATGC 60.307 52.174 0.00 0.00 0.00 3.14
4465 8153 3.899980 TGGTCCATCTCCTCACTCATATG 59.100 47.826 0.00 0.00 0.00 1.78
4466 8154 4.204792 TGGTCCATCTCCTCACTCATAT 57.795 45.455 0.00 0.00 0.00 1.78
4467 8155 3.688049 TGGTCCATCTCCTCACTCATA 57.312 47.619 0.00 0.00 0.00 2.15
4468 8156 2.557555 TGGTCCATCTCCTCACTCAT 57.442 50.000 0.00 0.00 0.00 2.90
4469 8157 2.502947 CAATGGTCCATCTCCTCACTCA 59.497 50.000 4.39 0.00 0.00 3.41
4470 8158 2.158842 CCAATGGTCCATCTCCTCACTC 60.159 54.545 4.39 0.00 0.00 3.51
4471 8159 1.842562 CCAATGGTCCATCTCCTCACT 59.157 52.381 4.39 0.00 0.00 3.41
4472 8160 1.561542 ACCAATGGTCCATCTCCTCAC 59.438 52.381 4.39 0.00 0.00 3.51
4473 8161 1.839994 GACCAATGGTCCATCTCCTCA 59.160 52.381 21.30 0.00 46.19 3.86
4474 8162 2.629336 GACCAATGGTCCATCTCCTC 57.371 55.000 21.30 0.00 46.19 3.71
4485 8173 0.991920 ACCAGTACCAGGACCAATGG 59.008 55.000 8.83 0.00 43.87 3.16
4486 8174 1.351017 ACACCAGTACCAGGACCAATG 59.649 52.381 8.83 0.00 0.00 2.82
4487 8175 1.351017 CACACCAGTACCAGGACCAAT 59.649 52.381 8.83 0.00 0.00 3.16
4488 8176 0.762418 CACACCAGTACCAGGACCAA 59.238 55.000 8.83 0.00 0.00 3.67
4489 8177 1.764571 GCACACCAGTACCAGGACCA 61.765 60.000 8.83 0.00 0.00 4.02
4490 8178 1.003718 GCACACCAGTACCAGGACC 60.004 63.158 8.83 0.00 0.00 4.46
4491 8179 0.324943 ATGCACACCAGTACCAGGAC 59.675 55.000 8.83 0.00 0.00 3.85
4492 8180 0.324614 CATGCACACCAGTACCAGGA 59.675 55.000 8.83 0.00 0.00 3.86
4493 8181 0.677731 CCATGCACACCAGTACCAGG 60.678 60.000 0.00 0.58 0.00 4.45
4494 8182 0.036732 ACCATGCACACCAGTACCAG 59.963 55.000 0.00 0.00 0.00 4.00
4495 8183 0.250684 CACCATGCACACCAGTACCA 60.251 55.000 0.00 0.00 0.00 3.25
4496 8184 0.036164 TCACCATGCACACCAGTACC 59.964 55.000 0.00 0.00 0.00 3.34
4497 8185 2.009774 GATCACCATGCACACCAGTAC 58.990 52.381 0.00 0.00 0.00 2.73
4498 8186 1.627834 TGATCACCATGCACACCAGTA 59.372 47.619 0.00 0.00 0.00 2.74
4499 8187 0.401356 TGATCACCATGCACACCAGT 59.599 50.000 0.00 0.00 0.00 4.00
4500 8188 1.674441 GATGATCACCATGCACACCAG 59.326 52.381 0.00 0.00 35.17 4.00
4501 8189 1.004511 TGATGATCACCATGCACACCA 59.995 47.619 0.00 0.00 35.17 4.17
4502 8190 1.753930 TGATGATCACCATGCACACC 58.246 50.000 0.00 0.00 35.17 4.16
4503 8191 2.751259 AGTTGATGATCACCATGCACAC 59.249 45.455 0.00 0.00 35.17 3.82
4504 8192 3.076079 AGTTGATGATCACCATGCACA 57.924 42.857 0.00 0.00 35.17 4.57
4505 8193 4.637534 AGTTAGTTGATGATCACCATGCAC 59.362 41.667 0.00 0.00 35.17 4.57
4506 8194 4.847198 AGTTAGTTGATGATCACCATGCA 58.153 39.130 0.00 0.00 35.17 3.96
4507 8195 6.925610 TTAGTTAGTTGATGATCACCATGC 57.074 37.500 0.00 0.00 35.17 4.06
4508 8196 8.667076 TGATTAGTTAGTTGATGATCACCATG 57.333 34.615 0.00 0.00 35.17 3.66
4509 8197 9.857656 ATTGATTAGTTAGTTGATGATCACCAT 57.142 29.630 0.00 0.00 38.43 3.55
4510 8198 9.112725 CATTGATTAGTTAGTTGATGATCACCA 57.887 33.333 0.00 0.00 0.00 4.17
4511 8199 9.113838 ACATTGATTAGTTAGTTGATGATCACC 57.886 33.333 0.00 0.00 0.00 4.02
4521 8209 9.979578 TGCATTTGAAACATTGATTAGTTAGTT 57.020 25.926 0.00 0.00 0.00 2.24
4524 8212 9.368674 CCATGCATTTGAAACATTGATTAGTTA 57.631 29.630 0.00 0.00 0.00 2.24
4525 8213 8.095792 TCCATGCATTTGAAACATTGATTAGTT 58.904 29.630 0.00 0.00 0.00 2.24
4526 8214 7.613585 TCCATGCATTTGAAACATTGATTAGT 58.386 30.769 0.00 0.00 0.00 2.24
4527 8215 8.657074 ATCCATGCATTTGAAACATTGATTAG 57.343 30.769 0.00 0.00 0.00 1.73
4529 8217 7.931578 AATCCATGCATTTGAAACATTGATT 57.068 28.000 0.00 3.51 33.65 2.57
4530 8218 8.262227 AGTAATCCATGCATTTGAAACATTGAT 58.738 29.630 0.00 0.00 30.02 2.57
4531 8219 7.546316 CAGTAATCCATGCATTTGAAACATTGA 59.454 33.333 0.00 0.00 0.00 2.57
4532 8220 7.546316 TCAGTAATCCATGCATTTGAAACATTG 59.454 33.333 0.00 0.00 0.00 2.82
4533 8221 7.546667 GTCAGTAATCCATGCATTTGAAACATT 59.453 33.333 0.00 0.00 0.00 2.71
4534 8222 7.037438 GTCAGTAATCCATGCATTTGAAACAT 58.963 34.615 0.00 0.00 0.00 2.71
4535 8223 6.389091 GTCAGTAATCCATGCATTTGAAACA 58.611 36.000 0.00 0.00 0.00 2.83
4536 8224 5.512788 CGTCAGTAATCCATGCATTTGAAAC 59.487 40.000 0.00 0.54 0.00 2.78
4537 8225 5.414144 TCGTCAGTAATCCATGCATTTGAAA 59.586 36.000 0.00 0.00 0.00 2.69
4538 8226 4.940654 TCGTCAGTAATCCATGCATTTGAA 59.059 37.500 0.00 0.00 0.00 2.69
4539 8227 4.512484 TCGTCAGTAATCCATGCATTTGA 58.488 39.130 0.00 0.00 0.00 2.69
4540 8228 4.880886 TCGTCAGTAATCCATGCATTTG 57.119 40.909 0.00 0.00 0.00 2.32
4541 8229 4.201950 GCTTCGTCAGTAATCCATGCATTT 60.202 41.667 0.00 0.00 0.00 2.32
4542 8230 3.313526 GCTTCGTCAGTAATCCATGCATT 59.686 43.478 0.00 0.00 0.00 3.56
4543 8231 2.874701 GCTTCGTCAGTAATCCATGCAT 59.125 45.455 0.00 0.00 0.00 3.96
4544 8232 2.279741 GCTTCGTCAGTAATCCATGCA 58.720 47.619 0.00 0.00 0.00 3.96
4545 8233 2.279741 TGCTTCGTCAGTAATCCATGC 58.720 47.619 0.00 0.00 0.00 4.06
4546 8234 4.944962 TTTGCTTCGTCAGTAATCCATG 57.055 40.909 0.00 0.00 0.00 3.66
4547 8235 7.624360 TTAATTTGCTTCGTCAGTAATCCAT 57.376 32.000 0.00 0.00 0.00 3.41
4548 8236 7.201696 GGATTAATTTGCTTCGTCAGTAATCCA 60.202 37.037 12.17 0.00 39.11 3.41
4549 8237 7.132863 GGATTAATTTGCTTCGTCAGTAATCC 58.867 38.462 0.00 0.00 34.54 3.01
4550 8238 6.846283 CGGATTAATTTGCTTCGTCAGTAATC 59.154 38.462 0.00 0.00 0.00 1.75
4551 8239 6.715464 CGGATTAATTTGCTTCGTCAGTAAT 58.285 36.000 0.00 0.00 0.00 1.89
4552 8240 5.446741 GCGGATTAATTTGCTTCGTCAGTAA 60.447 40.000 5.81 0.00 0.00 2.24
4553 8241 4.033587 GCGGATTAATTTGCTTCGTCAGTA 59.966 41.667 5.81 0.00 0.00 2.74
4554 8242 3.181510 GCGGATTAATTTGCTTCGTCAGT 60.182 43.478 5.81 0.00 0.00 3.41
4555 8243 3.181511 TGCGGATTAATTTGCTTCGTCAG 60.182 43.478 12.34 0.00 0.00 3.51
4556 8244 2.744741 TGCGGATTAATTTGCTTCGTCA 59.255 40.909 12.34 0.00 0.00 4.35
4557 8245 3.354397 CTGCGGATTAATTTGCTTCGTC 58.646 45.455 12.34 0.00 0.00 4.20
4558 8246 2.097466 CCTGCGGATTAATTTGCTTCGT 59.903 45.455 12.34 0.00 0.00 3.85
4559 8247 2.541588 CCCTGCGGATTAATTTGCTTCG 60.542 50.000 12.34 0.00 0.00 3.79
4560 8248 2.687935 TCCCTGCGGATTAATTTGCTTC 59.312 45.455 12.34 0.00 31.13 3.86
4561 8249 2.427095 GTCCCTGCGGATTAATTTGCTT 59.573 45.455 12.34 0.00 41.40 3.91
4562 8250 2.024414 GTCCCTGCGGATTAATTTGCT 58.976 47.619 12.34 0.00 41.40 3.91
4563 8251 1.748493 TGTCCCTGCGGATTAATTTGC 59.252 47.619 0.00 6.04 41.40 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.