Multiple sequence alignment - TraesCS6B01G167100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G167100 chr6B 100.000 6839 0 0 1 6839 175337221 175344059 0.000000e+00 12630.0
1 TraesCS6B01G167100 chr6B 82.090 134 14 7 5990 6122 175709359 175709483 9.380000e-19 106.0
2 TraesCS6B01G167100 chr6B 86.154 65 4 5 13 73 388404045 388403982 1.590000e-06 65.8
3 TraesCS6B01G167100 chr6D 96.942 6181 133 28 157 6317 91516428 91522572 0.000000e+00 10316.0
4 TraesCS6B01G167100 chr6D 86.026 229 28 4 6611 6839 91557473 91557697 6.850000e-60 243.0
5 TraesCS6B01G167100 chr6D 90.000 50 5 0 15 64 414115753 414115802 1.590000e-06 65.8
6 TraesCS6B01G167100 chr6D 88.235 51 6 0 64 114 91516311 91516361 2.060000e-05 62.1
7 TraesCS6B01G167100 chr6A 94.381 6478 208 72 60 6444 109982465 109988879 0.000000e+00 9803.0
8 TraesCS6B01G167100 chr6A 89.524 315 16 7 6525 6839 109988900 109989197 3.870000e-102 383.0
9 TraesCS6B01G167100 chr6A 79.921 254 20 18 5870 6122 110331196 110331419 2.550000e-34 158.0
10 TraesCS6B01G167100 chr7D 75.453 717 138 31 1784 2484 568953536 568952842 1.430000e-81 315.0
11 TraesCS6B01G167100 chr7D 79.790 381 67 8 2860 3230 568952490 568952110 1.130000e-67 268.0
12 TraesCS6B01G167100 chr7D 85.165 182 27 0 2099 2280 548771557 548771738 3.260000e-43 187.0
13 TraesCS6B01G167100 chr7D 91.837 49 4 0 15 63 17869490 17869538 1.230000e-07 69.4
14 TraesCS6B01G167100 chr7D 100.000 32 0 0 327 358 568955255 568955224 7.410000e-05 60.2
15 TraesCS6B01G167100 chr7B 79.521 376 67 8 2859 3226 625299596 625299223 6.800000e-65 259.0
16 TraesCS6B01G167100 chr7B 78.005 391 70 14 2099 2484 625300329 625299950 1.480000e-56 231.0
17 TraesCS6B01G167100 chr7B 100.000 32 0 0 327 358 625302380 625302349 7.410000e-05 60.2
18 TraesCS6B01G167100 chr7A 78.534 382 70 10 2859 3230 657719437 657719058 2.460000e-59 241.0
19 TraesCS6B01G167100 chr7A 78.005 391 71 15 2099 2484 657720170 657719790 1.480000e-56 231.0
20 TraesCS6B01G167100 chr7A 91.489 47 4 0 17 63 569392334 569392380 1.590000e-06 65.8
21 TraesCS6B01G167100 chr7A 100.000 32 0 0 327 358 657722291 657722260 7.410000e-05 60.2
22 TraesCS6B01G167100 chr5B 92.157 51 3 1 14 63 109111201 109111151 3.420000e-08 71.3
23 TraesCS6B01G167100 chr3D 90.385 52 5 0 15 66 414762708 414762657 1.230000e-07 69.4
24 TraesCS6B01G167100 chr5A 90.196 51 4 1 14 63 339751742 339751792 1.590000e-06 65.8
25 TraesCS6B01G167100 chr3A 90.196 51 4 1 14 63 550547449 550547399 1.590000e-06 65.8
26 TraesCS6B01G167100 chr5D 95.122 41 1 1 29 68 52889645 52889605 5.730000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G167100 chr6B 175337221 175344059 6838 False 12630.00 12630 100.0000 1 6839 1 chr6B.!!$F1 6838
1 TraesCS6B01G167100 chr6D 91516311 91522572 6261 False 5189.05 10316 92.5885 64 6317 2 chr6D.!!$F3 6253
2 TraesCS6B01G167100 chr6A 109982465 109989197 6732 False 5093.00 9803 91.9525 60 6839 2 chr6A.!!$F2 6779
3 TraesCS6B01G167100 chr7D 568952110 568955255 3145 True 214.40 315 85.0810 327 3230 3 chr7D.!!$R1 2903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 128 0.109597 GGCAAATCTGACGTGGCAAG 60.110 55.000 0.00 0.00 37.73 4.01 F
405 458 0.590195 AAGCTGCAGCAAGAAGAACG 59.410 50.000 38.24 0.00 45.16 3.95 F
999 1457 1.131504 CTTCTAGCTCGCTCGTCAAGT 59.868 52.381 0.00 0.00 0.00 3.16 F
2694 3536 1.112916 TCTGACGACAGGTTGGAGCA 61.113 55.000 14.76 0.00 43.60 4.26 F
3686 4552 1.431496 GCGGACCTTTACTTGCGTAA 58.569 50.000 0.00 0.00 33.94 3.18 F
3836 4702 0.690762 GGCAACCAAGGGTGTCTCTA 59.309 55.000 5.96 0.00 35.34 2.43 F
5464 6333 0.815615 GGCACCTATTTGGCCTCGAG 60.816 60.000 5.13 5.13 44.32 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2893 1.066858 CACGGACAGATGGCACTAGTT 60.067 52.381 0.00 0.0 0.00 2.24 R
2316 3158 7.229228 TCTGAAAATATAACATGACGGTTCG 57.771 36.000 0.00 0.0 32.29 3.95 R
2785 3627 2.564947 GGGTATGGATGGAGAGCACTAG 59.435 54.545 0.00 0.0 0.00 2.57 R
3836 4702 1.767681 GTCAGAGGCTCAATCTCCCAT 59.232 52.381 18.26 0.0 31.96 4.00 R
4802 5670 0.325933 CATGGGTCAGAGACAGGCAA 59.674 55.000 0.00 0.0 33.68 4.52 R
5747 6616 0.534877 ATCACAACTGTTGCCGAGCA 60.535 50.000 19.82 0.0 36.47 4.26 R
6512 7387 0.549950 CATGAGCTTCCCAGGACCAT 59.450 55.000 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.893305 AAAGTTAAGTCATTTATTTTGAGACGG 57.107 29.630 0.00 0.00 34.56 4.79
55 56 8.842358 AGTTAAGTCATTTATTTTGAGACGGA 57.158 30.769 0.00 0.00 34.56 4.69
56 57 8.936864 AGTTAAGTCATTTATTTTGAGACGGAG 58.063 33.333 0.00 0.00 34.56 4.63
57 58 6.743575 AAGTCATTTATTTTGAGACGGAGG 57.256 37.500 0.00 0.00 34.56 4.30
58 59 5.186198 AGTCATTTATTTTGAGACGGAGGG 58.814 41.667 0.00 0.00 34.56 4.30
61 62 4.903045 TTTATTTTGAGACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
109 110 6.585702 TCATATTTTCAAACACGGCAAATCTG 59.414 34.615 0.00 0.00 0.00 2.90
119 128 0.109597 GGCAAATCTGACGTGGCAAG 60.110 55.000 0.00 0.00 37.73 4.01
155 164 6.183360 GCCTGCATGATAATTTACTTCAGTGT 60.183 38.462 0.00 0.00 0.00 3.55
178 228 1.804748 GAAGTGTACCTTTTCAGCCGG 59.195 52.381 0.00 0.00 32.03 6.13
290 341 8.655970 CAGAGAAAAAGTTGGTTTTTAAAGTGG 58.344 33.333 0.00 0.00 46.36 4.00
306 357 4.686191 AAGTGGCATGATAGAGAAGAGG 57.314 45.455 0.00 0.00 0.00 3.69
310 361 3.116977 TGGCATGATAGAGAAGAGGGAGA 60.117 47.826 0.00 0.00 0.00 3.71
405 458 0.590195 AAGCTGCAGCAAGAAGAACG 59.410 50.000 38.24 0.00 45.16 3.95
437 490 2.070639 GAAGTGCACTTCCCCCTCT 58.929 57.895 38.44 15.20 44.93 3.69
447 500 1.568597 CTTCCCCCTCTCTCTCTCTCA 59.431 57.143 0.00 0.00 0.00 3.27
459 512 6.884832 TCTCTCTCTCTCACTTCTAACTAGG 58.115 44.000 0.00 0.00 0.00 3.02
956 1414 3.898509 CTGCTCCCTCGCCTCTCG 61.899 72.222 0.00 0.00 40.15 4.04
962 1420 3.213402 CCTCGCCTCTCGGTCTCC 61.213 72.222 0.00 0.00 39.05 3.71
999 1457 1.131504 CTTCTAGCTCGCTCGTCAAGT 59.868 52.381 0.00 0.00 0.00 3.16
1309 2119 1.336240 GCGCAGAGTTTCTTGCCAAAT 60.336 47.619 0.30 0.00 0.00 2.32
1310 2120 2.863704 GCGCAGAGTTTCTTGCCAAATT 60.864 45.455 0.30 0.00 0.00 1.82
1315 2128 6.146021 CGCAGAGTTTCTTGCCAAATTATTTT 59.854 34.615 0.00 0.00 0.00 1.82
1336 2149 1.756538 CCCAGTGAAAGGTGCAAAAGT 59.243 47.619 0.00 0.00 0.00 2.66
1338 2151 3.243401 CCCAGTGAAAGGTGCAAAAGTAC 60.243 47.826 0.00 0.00 0.00 2.73
1352 2165 8.654215 GGTGCAAAAGTACTACTATTACTTGTC 58.346 37.037 0.00 0.00 39.28 3.18
1571 2399 5.476945 GGTGTTGTATTTTCCTCAAGGTCAT 59.523 40.000 0.00 0.00 36.34 3.06
1616 2444 5.589452 TCCTCTCAGTAGAACGATTTAGACC 59.411 44.000 0.00 0.00 0.00 3.85
1617 2445 5.481200 TCTCAGTAGAACGATTTAGACCG 57.519 43.478 0.00 0.00 0.00 4.79
1886 2726 2.792196 GCATAATGTGACCATGCACGTG 60.792 50.000 12.28 12.28 43.59 4.49
1906 2746 4.376717 CGTGAGTTCGGATCGATATAACGA 60.377 45.833 7.59 7.59 46.04 3.85
1926 2766 3.365364 CGAATCTGTTTCAAGACCCAAGC 60.365 47.826 0.01 0.00 33.66 4.01
2051 2891 5.525378 CACTCAGCCCAGTAATACAGATTTC 59.475 44.000 0.00 0.00 0.00 2.17
2053 2893 4.473196 TCAGCCCAGTAATACAGATTTCCA 59.527 41.667 0.00 0.00 0.00 3.53
2071 2913 1.645034 CAACTAGTGCCATCTGTCCG 58.355 55.000 0.00 0.00 0.00 4.79
2694 3536 1.112916 TCTGACGACAGGTTGGAGCA 61.113 55.000 14.76 0.00 43.60 4.26
2886 3728 1.678101 GACAACAACCAGCTGCTTCTT 59.322 47.619 8.66 0.00 0.00 2.52
3367 4233 8.915654 GCCTTTTATATCTTGTTCTTTGTGTTG 58.084 33.333 0.00 0.00 0.00 3.33
3378 4244 8.902540 TTGTTCTTTGTGTTGTCTGTATAGAT 57.097 30.769 0.00 0.00 34.94 1.98
3686 4552 1.431496 GCGGACCTTTACTTGCGTAA 58.569 50.000 0.00 0.00 33.94 3.18
3699 4565 9.820229 CTTTACTTGCGTAATAGTTTGATTTCA 57.180 29.630 0.00 0.00 35.65 2.69
3758 4624 3.061161 GCCATGTGCTTTAAAATTGAGCG 59.939 43.478 0.00 0.00 39.23 5.03
3836 4702 0.690762 GGCAACCAAGGGTGTCTCTA 59.309 55.000 5.96 0.00 35.34 2.43
4216 5084 2.305635 TCTGCAACCTGACATGTACCAT 59.694 45.455 0.00 0.00 0.00 3.55
4409 5277 2.288640 GCAATCCAAGGCCATAATCAGC 60.289 50.000 5.01 0.00 0.00 4.26
4721 5589 4.889995 TCAGCTCTCTTTCTCCATCGAATA 59.110 41.667 0.00 0.00 0.00 1.75
4802 5670 1.152546 GTGCCAAGAACCACCCCTT 60.153 57.895 0.00 0.00 0.00 3.95
4867 5735 2.034053 GTCTGTGATCCCTTCTAGCTCG 59.966 54.545 0.00 0.00 0.00 5.03
5252 6120 9.740239 CGGAAAATTCTGATCATGTAAATCAAT 57.260 29.630 0.00 0.00 35.56 2.57
5290 6158 4.935808 GTGAAGGTGACCGAATTGACTTAT 59.064 41.667 0.00 0.00 0.00 1.73
5307 6175 5.301045 TGACTTATCCACCTAATCGTACCAG 59.699 44.000 0.00 0.00 0.00 4.00
5319 6187 8.921205 ACCTAATCGTACCAGTAACATTTCTAT 58.079 33.333 0.00 0.00 0.00 1.98
5381 6250 7.227873 TGTCATGTAGGTTTACAAATCTGGAA 58.772 34.615 0.00 0.00 42.72 3.53
5437 6306 3.676324 GCAGCTACCATGAACTTCGTAGT 60.676 47.826 0.00 0.00 35.68 2.73
5448 6317 1.272313 ACTTCGTAGTGAGGTAGGGCA 60.272 52.381 0.00 0.00 34.72 5.36
5464 6333 0.815615 GGCACCTATTTGGCCTCGAG 60.816 60.000 5.13 5.13 44.32 4.04
5586 6455 2.452600 AGGCAACAACTTCCCAAGAA 57.547 45.000 0.00 0.00 41.41 2.52
5596 6465 2.558359 ACTTCCCAAGAATCTTTTGCCG 59.442 45.455 0.00 0.00 0.00 5.69
5747 6616 3.222855 CTCGGCTCCTGCGAGGAT 61.223 66.667 5.50 0.00 44.81 3.24
5811 6680 1.279271 AGAAGCCTGAGCACCGTAATT 59.721 47.619 0.00 0.00 43.56 1.40
5843 6712 3.923461 GGTTCTGTCGAGTTCTGAAGATG 59.077 47.826 0.00 0.00 0.00 2.90
5888 6757 1.363744 AGTATGTTTCTGCAGCTCGC 58.636 50.000 9.47 0.00 42.89 5.03
6096 6966 0.250597 ACTCTTTACCCGTGTTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
6097 6967 0.958876 CTCTTTACCCGTGTTGCCCC 60.959 60.000 0.00 0.00 0.00 5.80
6323 7194 3.943381 TGAGCTAATCCTTCTACGTTCGA 59.057 43.478 0.00 0.00 0.00 3.71
6363 7236 4.668177 CGTTCCCTGTGTTTATAAGCAACG 60.668 45.833 3.34 5.71 0.00 4.10
6369 7242 6.238103 CCCTGTGTTTATAAGCAACGTATGAG 60.238 42.308 3.34 0.00 0.00 2.90
6384 7257 7.724305 AACGTATGAGTTGAATGTTGTTACT 57.276 32.000 0.00 0.00 32.39 2.24
6385 7258 7.724305 ACGTATGAGTTGAATGTTGTTACTT 57.276 32.000 0.00 0.00 0.00 2.24
6386 7259 8.149973 ACGTATGAGTTGAATGTTGTTACTTT 57.850 30.769 0.00 0.00 0.00 2.66
6387 7260 8.617809 ACGTATGAGTTGAATGTTGTTACTTTT 58.382 29.630 0.00 0.00 0.00 2.27
6435 7310 7.708322 TCATGACAGATAGCAATTAGAAGTGTC 59.292 37.037 0.00 0.00 33.85 3.67
6436 7311 7.175347 TGACAGATAGCAATTAGAAGTGTCT 57.825 36.000 0.00 0.00 37.95 3.41
6437 7312 7.038048 TGACAGATAGCAATTAGAAGTGTCTG 58.962 38.462 7.06 7.06 33.57 3.51
6444 7319 5.409826 AGCAATTAGAAGTGTCTGCAGTAAC 59.590 40.000 14.67 13.05 35.12 2.50
6446 7321 6.619446 GCAATTAGAAGTGTCTGCAGTAACAG 60.619 42.308 14.67 1.21 39.12 3.16
6447 7322 5.531122 TTAGAAGTGTCTGCAGTAACAGT 57.469 39.130 14.67 11.68 38.84 3.55
6448 7323 6.644248 TTAGAAGTGTCTGCAGTAACAGTA 57.356 37.500 14.67 0.00 38.84 2.74
6451 7326 5.302059 AGAAGTGTCTGCAGTAACAGTAAGA 59.698 40.000 14.67 0.00 38.84 2.10
6453 7328 5.533482 AGTGTCTGCAGTAACAGTAAGAAG 58.467 41.667 14.67 0.00 38.84 2.85
6454 7329 5.069251 AGTGTCTGCAGTAACAGTAAGAAGT 59.931 40.000 14.67 0.00 38.84 3.01
6456 7331 6.921857 GTGTCTGCAGTAACAGTAAGAAGTAA 59.078 38.462 14.67 0.00 38.84 2.24
6457 7332 7.115095 GTGTCTGCAGTAACAGTAAGAAGTAAG 59.885 40.741 14.67 0.00 38.84 2.34
6459 7334 8.030106 GTCTGCAGTAACAGTAAGAAGTAAGAT 58.970 37.037 14.67 0.00 38.84 2.40
6460 7335 8.029522 TCTGCAGTAACAGTAAGAAGTAAGATG 58.970 37.037 14.67 0.00 38.84 2.90
6461 7336 7.097192 TGCAGTAACAGTAAGAAGTAAGATGG 58.903 38.462 0.00 0.00 0.00 3.51
6462 7337 6.036191 GCAGTAACAGTAAGAAGTAAGATGGC 59.964 42.308 0.00 0.00 0.00 4.40
6463 7338 7.097192 CAGTAACAGTAAGAAGTAAGATGGCA 58.903 38.462 0.00 0.00 0.00 4.92
6464 7339 7.602644 CAGTAACAGTAAGAAGTAAGATGGCAA 59.397 37.037 0.00 0.00 0.00 4.52
6465 7340 8.154856 AGTAACAGTAAGAAGTAAGATGGCAAA 58.845 33.333 0.00 0.00 0.00 3.68
6466 7341 8.947115 GTAACAGTAAGAAGTAAGATGGCAAAT 58.053 33.333 0.00 0.00 0.00 2.32
6468 7343 8.723942 ACAGTAAGAAGTAAGATGGCAAATAG 57.276 34.615 0.00 0.00 0.00 1.73
6469 7344 7.281100 ACAGTAAGAAGTAAGATGGCAAATAGC 59.719 37.037 0.00 0.00 44.65 2.97
6481 7356 3.843426 GCAAATAGCACGTACTAGCAG 57.157 47.619 1.38 0.00 44.79 4.24
6482 7357 3.187700 GCAAATAGCACGTACTAGCAGT 58.812 45.455 1.38 0.00 44.79 4.40
6483 7358 3.000322 GCAAATAGCACGTACTAGCAGTG 60.000 47.826 1.38 8.06 44.79 3.66
6487 7362 3.794690 CACGTACTAGCAGTGCTGT 57.205 52.632 27.97 22.89 40.10 4.40
6488 7363 2.065993 CACGTACTAGCAGTGCTGTT 57.934 50.000 27.97 15.93 40.10 3.16
6489 7364 1.986378 CACGTACTAGCAGTGCTGTTC 59.014 52.381 27.97 17.98 40.10 3.18
6490 7365 1.067776 ACGTACTAGCAGTGCTGTTCC 60.068 52.381 27.97 14.64 40.10 3.62
6491 7366 1.202582 CGTACTAGCAGTGCTGTTCCT 59.797 52.381 27.97 2.32 40.10 3.36
6492 7367 2.732597 CGTACTAGCAGTGCTGTTCCTC 60.733 54.545 27.97 11.43 40.10 3.71
6493 7368 1.342074 ACTAGCAGTGCTGTTCCTCA 58.658 50.000 27.97 4.49 40.10 3.86
6494 7369 1.274728 ACTAGCAGTGCTGTTCCTCAG 59.725 52.381 27.97 16.72 46.12 3.35
6495 7370 1.274728 CTAGCAGTGCTGTTCCTCAGT 59.725 52.381 27.97 0.00 45.23 3.41
6496 7371 1.342074 AGCAGTGCTGTTCCTCAGTA 58.658 50.000 18.98 0.00 45.23 2.74
6497 7372 1.694150 AGCAGTGCTGTTCCTCAGTAA 59.306 47.619 18.98 0.00 45.23 2.24
6498 7373 2.104792 AGCAGTGCTGTTCCTCAGTAAA 59.895 45.455 18.98 0.00 45.23 2.01
6499 7374 2.878406 GCAGTGCTGTTCCTCAGTAAAA 59.122 45.455 8.18 0.00 45.23 1.52
6500 7375 3.315191 GCAGTGCTGTTCCTCAGTAAAAA 59.685 43.478 8.18 0.00 45.23 1.94
6521 7396 4.881019 AAAGAGATCGATATGGTCCTGG 57.119 45.455 0.00 0.00 0.00 4.45
6522 7397 2.813907 AGAGATCGATATGGTCCTGGG 58.186 52.381 0.00 0.00 0.00 4.45
6523 7398 2.380249 AGAGATCGATATGGTCCTGGGA 59.620 50.000 0.00 0.00 0.00 4.37
6527 7402 1.051812 CGATATGGTCCTGGGAAGCT 58.948 55.000 0.00 0.00 0.00 3.74
6556 7431 1.886422 AGATCCAAGAGGGGGAAGTC 58.114 55.000 0.00 0.00 38.09 3.01
6565 7440 0.119155 AGGGGGAAGTCACCTGATCA 59.881 55.000 0.00 0.00 40.05 2.92
6568 7443 2.024941 GGGGGAAGTCACCTGATCATTT 60.025 50.000 0.00 0.00 40.05 2.32
6569 7444 3.202151 GGGGGAAGTCACCTGATCATTTA 59.798 47.826 0.00 0.00 40.05 1.40
6570 7445 4.325030 GGGGGAAGTCACCTGATCATTTAA 60.325 45.833 0.00 0.00 40.05 1.52
6571 7446 4.640647 GGGGAAGTCACCTGATCATTTAAC 59.359 45.833 0.00 0.00 36.20 2.01
6572 7447 5.253330 GGGAAGTCACCTGATCATTTAACA 58.747 41.667 0.00 0.00 0.00 2.41
6573 7448 5.710099 GGGAAGTCACCTGATCATTTAACAA 59.290 40.000 0.00 0.00 0.00 2.83
6574 7449 6.378280 GGGAAGTCACCTGATCATTTAACAAT 59.622 38.462 0.00 0.00 0.00 2.71
6575 7450 7.093771 GGGAAGTCACCTGATCATTTAACAATT 60.094 37.037 0.00 0.00 0.00 2.32
6576 7451 7.756722 GGAAGTCACCTGATCATTTAACAATTG 59.243 37.037 3.24 3.24 0.00 2.32
6577 7452 7.765695 AGTCACCTGATCATTTAACAATTGT 57.234 32.000 4.92 4.92 0.00 2.71
6578 7453 7.596494 AGTCACCTGATCATTTAACAATTGTG 58.404 34.615 12.82 0.00 0.00 3.33
6579 7454 7.231317 AGTCACCTGATCATTTAACAATTGTGT 59.769 33.333 12.82 5.25 40.75 3.72
6580 7455 8.511321 GTCACCTGATCATTTAACAATTGTGTA 58.489 33.333 12.82 4.27 36.80 2.90
6581 7456 8.511321 TCACCTGATCATTTAACAATTGTGTAC 58.489 33.333 12.82 0.00 36.80 2.90
6622 7497 2.462503 GCATGCCATGTGCCTTTTG 58.537 52.632 6.36 0.00 40.16 2.44
6669 7544 1.205417 GAGTGCCCACCCATTGAATTG 59.795 52.381 0.00 0.00 0.00 2.32
6686 7561 8.726988 CATTGAATTGATGGCTGAAAGAAAAAT 58.273 29.630 0.00 0.00 34.07 1.82
6694 7569 5.550290 TGGCTGAAAGAAAAATGATTTCCC 58.450 37.500 0.00 0.00 34.07 3.97
6714 7589 1.194781 TTCTCCTGAGGCCAGTGGTC 61.195 60.000 5.33 5.33 38.74 4.02
6744 7619 0.037326 GTGAATGTGACGGCCTCTCA 60.037 55.000 0.00 5.33 0.00 3.27
6745 7620 0.247460 TGAATGTGACGGCCTCTCAG 59.753 55.000 0.00 0.00 0.00 3.35
6767 7642 5.359009 CAGCCCAATCACATATCAGTTTCTT 59.641 40.000 0.00 0.00 0.00 2.52
6770 7645 6.459298 GCCCAATCACATATCAGTTTCTTCAG 60.459 42.308 0.00 0.00 0.00 3.02
6771 7646 6.039047 CCCAATCACATATCAGTTTCTTCAGG 59.961 42.308 0.00 0.00 0.00 3.86
6776 7651 2.503895 ATCAGTTTCTTCAGGCCCTG 57.496 50.000 3.69 3.69 0.00 4.45
6790 7665 0.682209 GCCCTGATGCCTGTTGTGAT 60.682 55.000 0.00 0.00 0.00 3.06
6794 7669 1.931841 CTGATGCCTGTTGTGATCTCG 59.068 52.381 0.00 0.00 0.00 4.04
6802 7677 1.446099 TTGTGATCTCGGTGCTCGC 60.446 57.895 0.00 0.00 39.05 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.893305 CCGTCTCAAAATAAATGACTTAACTTT 57.107 29.630 0.00 0.00 0.00 2.66
29 30 9.280174 TCCGTCTCAAAATAAATGACTTAACTT 57.720 29.630 0.00 0.00 0.00 2.66
30 31 8.842358 TCCGTCTCAAAATAAATGACTTAACT 57.158 30.769 0.00 0.00 0.00 2.24
31 32 8.175716 CCTCCGTCTCAAAATAAATGACTTAAC 58.824 37.037 0.00 0.00 0.00 2.01
32 33 7.335924 CCCTCCGTCTCAAAATAAATGACTTAA 59.664 37.037 0.00 0.00 0.00 1.85
33 34 6.821665 CCCTCCGTCTCAAAATAAATGACTTA 59.178 38.462 0.00 0.00 0.00 2.24
34 35 5.648092 CCCTCCGTCTCAAAATAAATGACTT 59.352 40.000 0.00 0.00 0.00 3.01
35 36 5.045869 TCCCTCCGTCTCAAAATAAATGACT 60.046 40.000 0.00 0.00 0.00 3.41
36 37 5.183228 TCCCTCCGTCTCAAAATAAATGAC 58.817 41.667 0.00 0.00 0.00 3.06
37 38 5.045869 ACTCCCTCCGTCTCAAAATAAATGA 60.046 40.000 0.00 0.00 0.00 2.57
38 39 5.186198 ACTCCCTCCGTCTCAAAATAAATG 58.814 41.667 0.00 0.00 0.00 2.32
39 40 5.437191 ACTCCCTCCGTCTCAAAATAAAT 57.563 39.130 0.00 0.00 0.00 1.40
40 41 4.903045 ACTCCCTCCGTCTCAAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
41 42 5.266788 TCTACTCCCTCCGTCTCAAAATAA 58.733 41.667 0.00 0.00 0.00 1.40
42 43 4.863548 TCTACTCCCTCCGTCTCAAAATA 58.136 43.478 0.00 0.00 0.00 1.40
43 44 3.709587 TCTACTCCCTCCGTCTCAAAAT 58.290 45.455 0.00 0.00 0.00 1.82
44 45 3.165087 TCTACTCCCTCCGTCTCAAAA 57.835 47.619 0.00 0.00 0.00 2.44
45 46 2.893215 TCTACTCCCTCCGTCTCAAA 57.107 50.000 0.00 0.00 0.00 2.69
46 47 3.383698 AATCTACTCCCTCCGTCTCAA 57.616 47.619 0.00 0.00 0.00 3.02
47 48 3.288964 GAAATCTACTCCCTCCGTCTCA 58.711 50.000 0.00 0.00 0.00 3.27
48 49 3.067040 GTGAAATCTACTCCCTCCGTCTC 59.933 52.174 0.00 0.00 0.00 3.36
49 50 3.025262 GTGAAATCTACTCCCTCCGTCT 58.975 50.000 0.00 0.00 0.00 4.18
50 51 3.025262 AGTGAAATCTACTCCCTCCGTC 58.975 50.000 0.00 0.00 0.00 4.79
51 52 3.103080 AGTGAAATCTACTCCCTCCGT 57.897 47.619 0.00 0.00 0.00 4.69
52 53 3.952323 TGTAGTGAAATCTACTCCCTCCG 59.048 47.826 0.00 0.00 40.39 4.63
53 54 5.934402 TTGTAGTGAAATCTACTCCCTCC 57.066 43.478 0.00 0.00 40.39 4.30
54 55 7.708752 CAGATTTGTAGTGAAATCTACTCCCTC 59.291 40.741 7.91 0.00 46.42 4.30
55 56 7.400339 TCAGATTTGTAGTGAAATCTACTCCCT 59.600 37.037 7.91 0.00 46.42 4.20
56 57 7.492994 GTCAGATTTGTAGTGAAATCTACTCCC 59.507 40.741 7.91 0.00 46.42 4.30
57 58 8.035394 TGTCAGATTTGTAGTGAAATCTACTCC 58.965 37.037 7.91 0.00 46.42 3.85
58 59 8.988064 TGTCAGATTTGTAGTGAAATCTACTC 57.012 34.615 7.91 3.94 46.42 2.59
93 94 1.002900 ACGTCAGATTTGCCGTGTTTG 60.003 47.619 0.00 0.00 37.53 2.93
99 100 1.851021 TTGCCACGTCAGATTTGCCG 61.851 55.000 0.00 0.00 0.00 5.69
119 128 0.101759 CATGCAGGCCACAGCATAAC 59.898 55.000 24.08 0.00 46.48 1.89
125 134 4.581824 AGTAAATTATCATGCAGGCCACAG 59.418 41.667 5.01 0.00 0.00 3.66
155 164 4.312443 CGGCTGAAAAGGTACACTTCTAA 58.688 43.478 0.00 0.00 38.85 2.10
178 228 4.730949 TGCAAGTAGTCAGGTATGTACC 57.269 45.455 0.81 0.81 46.82 3.34
191 241 3.312421 CCCCGTGTAATTCATGCAAGTAG 59.688 47.826 0.00 0.00 0.00 2.57
290 341 4.406456 TCTCTCCCTCTTCTCTATCATGC 58.594 47.826 0.00 0.00 0.00 4.06
306 357 0.535102 CGCTCTCTCCCTCTCTCTCC 60.535 65.000 0.00 0.00 0.00 3.71
310 361 1.152963 GCTCGCTCTCTCCCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
405 458 1.433534 CACTTCTTCTTCTCGGTGCC 58.566 55.000 0.00 0.00 0.00 5.01
434 487 6.986817 CCTAGTTAGAAGTGAGAGAGAGAGAG 59.013 46.154 0.00 0.00 0.00 3.20
437 490 6.631766 GCTCCTAGTTAGAAGTGAGAGAGAGA 60.632 46.154 0.00 0.00 0.00 3.10
447 500 2.424246 GCTCGTGCTCCTAGTTAGAAGT 59.576 50.000 1.41 0.00 36.03 3.01
459 512 1.080501 TGCTACTGTGCTCGTGCTC 60.081 57.895 11.19 7.80 40.48 4.26
658 815 3.551259 CGGGAGCTAGGCAAAGAAA 57.449 52.632 0.00 0.00 0.00 2.52
956 1414 2.284995 ACAGGAGCCCAGGAGACC 60.285 66.667 0.00 0.00 0.00 3.85
962 1420 2.674380 GGCAACACAGGAGCCCAG 60.674 66.667 0.00 0.00 42.58 4.45
999 1457 0.591659 CGGACGGCGAGAGATTCATA 59.408 55.000 16.62 0.00 0.00 2.15
1053 1514 2.035576 GACAGTAATACCTTCCGGCGAT 59.964 50.000 9.30 0.00 0.00 4.58
1290 2100 2.712057 ATTTGGCAAGAAACTCTGCG 57.288 45.000 0.00 0.00 0.00 5.18
1309 2119 4.219115 TGCACCTTTCACTGGGAAAATAA 58.781 39.130 6.54 0.00 44.52 1.40
1310 2120 3.838565 TGCACCTTTCACTGGGAAAATA 58.161 40.909 6.54 0.00 44.52 1.40
1315 2128 2.031120 CTTTTGCACCTTTCACTGGGA 58.969 47.619 0.00 0.00 0.00 4.37
1336 2149 6.016527 CCTGCATCCGACAAGTAATAGTAGTA 60.017 42.308 0.00 0.00 0.00 1.82
1338 2151 5.009710 TCCTGCATCCGACAAGTAATAGTAG 59.990 44.000 0.00 0.00 0.00 2.57
1352 2165 2.493278 AGAAAAATGGTTCCTGCATCCG 59.507 45.455 0.00 0.00 0.00 4.18
1419 2247 7.655328 CGTCTGAGAAGAAGGCATAAAAGATAT 59.345 37.037 0.00 0.00 0.00 1.63
1420 2248 6.980978 CGTCTGAGAAGAAGGCATAAAAGATA 59.019 38.462 0.00 0.00 0.00 1.98
1426 2254 5.344743 AATCGTCTGAGAAGAAGGCATAA 57.655 39.130 1.54 0.00 0.00 1.90
1571 2399 6.195700 AGGAAGAATAGTAACCTGCTCACTA 58.804 40.000 0.00 0.00 0.00 2.74
1886 2726 6.466413 CAGATTCGTTATATCGATCCGAACTC 59.534 42.308 18.20 16.18 39.99 3.01
1906 2746 3.565307 TGCTTGGGTCTTGAAACAGATT 58.435 40.909 0.00 0.00 0.00 2.40
1926 2766 2.346803 ACAACGCTAATGCTGGTACTG 58.653 47.619 0.00 0.00 36.97 2.74
2051 2891 1.740380 CGGACAGATGGCACTAGTTGG 60.740 57.143 0.00 0.00 0.00 3.77
2053 2893 1.066858 CACGGACAGATGGCACTAGTT 60.067 52.381 0.00 0.00 0.00 2.24
2071 2913 7.653767 AAGTATGCTACAAACAGAAGTACAC 57.346 36.000 0.00 0.00 0.00 2.90
2316 3158 7.229228 TCTGAAAATATAACATGACGGTTCG 57.771 36.000 0.00 0.00 32.29 3.95
2694 3536 6.127310 ACCAGTCTCTTCGCACTTATAAAGAT 60.127 38.462 0.00 0.00 0.00 2.40
2785 3627 2.564947 GGGTATGGATGGAGAGCACTAG 59.435 54.545 0.00 0.00 0.00 2.57
2886 3728 4.642445 TCTATTTGCTCGACGTATTCCA 57.358 40.909 0.00 0.00 0.00 3.53
3378 4244 8.990163 AATTTAGGGAGTTCTGAAACAAGTTA 57.010 30.769 0.00 0.00 37.88 2.24
3836 4702 1.767681 GTCAGAGGCTCAATCTCCCAT 59.232 52.381 18.26 0.00 31.96 4.00
4001 4867 8.584063 ACCATTATAAAATGAACCGGTAAAGT 57.416 30.769 8.00 0.00 44.50 2.66
4216 5084 2.959372 GCTGCTGCTGACATTGCA 59.041 55.556 10.92 0.00 38.81 4.08
4409 5277 4.876906 GCTGTTGCTGGAGGTACTCAGG 62.877 59.091 11.31 0.00 46.97 3.86
4470 5338 2.674033 ATTCTTGCTGCTGCGGCA 60.674 55.556 30.82 30.82 44.61 5.69
4721 5589 0.464373 GTGTCATGCATGGACGGGAT 60.464 55.000 25.97 0.00 38.10 3.85
4802 5670 0.325933 CATGGGTCAGAGACAGGCAA 59.674 55.000 0.00 0.00 33.68 4.52
4867 5735 4.443063 TGTATATGCGACGAGTTAACATGC 59.557 41.667 8.61 4.68 0.00 4.06
5155 6023 6.146021 GTGCTTCATTCAACGGAAAATCATTT 59.854 34.615 0.00 0.00 36.43 2.32
5252 6120 2.671357 TTCACGAACGCTGCAGTCGA 62.671 55.000 28.70 9.35 0.00 4.20
5290 6158 4.343231 TGTTACTGGTACGATTAGGTGGA 58.657 43.478 0.00 0.00 0.00 4.02
5368 6237 5.538433 CCTTCCAAAGGTTCCAGATTTGTAA 59.462 40.000 0.00 0.00 43.95 2.41
5448 6317 2.221918 CCCTCGAGGCCAAATAGGT 58.778 57.895 26.87 0.00 40.61 3.08
5461 6330 3.003173 TCCTCCAACTGGCCCTCG 61.003 66.667 0.00 0.00 34.44 4.63
5464 6333 4.048470 GGGTCCTCCAACTGGCCC 62.048 72.222 0.00 0.00 35.13 5.80
5586 6455 1.956477 ACAGAAACAGCGGCAAAAGAT 59.044 42.857 1.45 0.00 0.00 2.40
5596 6465 2.246719 AGAGTGGACACAGAAACAGC 57.753 50.000 5.14 0.00 0.00 4.40
5747 6616 0.534877 ATCACAACTGTTGCCGAGCA 60.535 50.000 19.82 0.00 36.47 4.26
5811 6680 3.509137 GACAGAACCCACCGACGCA 62.509 63.158 0.00 0.00 0.00 5.24
5843 6712 4.459089 GAGGGTCGCAGGCTCCAC 62.459 72.222 0.00 0.00 19.48 4.02
5888 6757 3.557264 GGTTCCAGTTCACAAGACTAGGG 60.557 52.174 0.00 0.00 0.00 3.53
5952 6821 6.702716 ATCACATGCATGACATAAACATCA 57.297 33.333 32.75 0.00 36.64 3.07
6096 6966 9.357652 CAGAATATGACCAAAACAAACATTAGG 57.642 33.333 0.00 0.00 0.00 2.69
6097 6967 9.912634 ACAGAATATGACCAAAACAAACATTAG 57.087 29.630 0.00 0.00 0.00 1.73
6323 7194 7.719633 ACAGGGAACGCAATATATATTTCAAGT 59.280 33.333 5.18 1.61 0.00 3.16
6407 7280 9.702494 CACTTCTAATTGCTATCTGTCATGATA 57.298 33.333 0.00 0.00 0.00 2.15
6424 7299 6.102897 ACTGTTACTGCAGACACTTCTAAT 57.897 37.500 23.35 0.00 39.62 1.73
6429 7304 5.531122 TCTTACTGTTACTGCAGACACTT 57.469 39.130 23.35 9.75 39.62 3.16
6435 7310 7.276658 CCATCTTACTTCTTACTGTTACTGCAG 59.723 40.741 13.48 13.48 41.92 4.41
6436 7311 7.097192 CCATCTTACTTCTTACTGTTACTGCA 58.903 38.462 0.00 0.00 0.00 4.41
6437 7312 6.036191 GCCATCTTACTTCTTACTGTTACTGC 59.964 42.308 0.00 0.00 0.00 4.40
6444 7319 7.280876 TGCTATTTGCCATCTTACTTCTTACTG 59.719 37.037 0.00 0.00 42.00 2.74
6446 7321 7.410485 GTGCTATTTGCCATCTTACTTCTTAC 58.590 38.462 0.00 0.00 42.00 2.34
6447 7322 6.257849 CGTGCTATTTGCCATCTTACTTCTTA 59.742 38.462 0.00 0.00 42.00 2.10
6448 7323 5.065218 CGTGCTATTTGCCATCTTACTTCTT 59.935 40.000 0.00 0.00 42.00 2.52
6451 7326 4.261801 ACGTGCTATTTGCCATCTTACTT 58.738 39.130 0.00 0.00 42.00 2.24
6453 7328 4.809426 AGTACGTGCTATTTGCCATCTTAC 59.191 41.667 3.62 0.00 42.00 2.34
6454 7329 5.018539 AGTACGTGCTATTTGCCATCTTA 57.981 39.130 3.62 0.00 42.00 2.10
6456 7331 3.543680 AGTACGTGCTATTTGCCATCT 57.456 42.857 3.62 0.00 42.00 2.90
6457 7332 3.184581 GCTAGTACGTGCTATTTGCCATC 59.815 47.826 13.98 0.00 42.00 3.51
6459 7334 2.093921 TGCTAGTACGTGCTATTTGCCA 60.094 45.455 13.98 4.38 42.00 4.92
6460 7335 2.540101 CTGCTAGTACGTGCTATTTGCC 59.460 50.000 13.98 2.03 42.00 4.52
6461 7336 3.000322 CACTGCTAGTACGTGCTATTTGC 60.000 47.826 13.98 13.94 43.25 3.68
6462 7337 4.761910 CACTGCTAGTACGTGCTATTTG 57.238 45.455 13.98 9.08 0.00 2.32
6469 7344 1.986378 GAACAGCACTGCTAGTACGTG 59.014 52.381 2.39 6.21 36.40 4.49
6470 7345 1.067776 GGAACAGCACTGCTAGTACGT 60.068 52.381 2.39 0.00 36.40 3.57
6471 7346 1.202582 AGGAACAGCACTGCTAGTACG 59.797 52.381 2.39 0.00 36.40 3.67
6472 7347 2.231478 TGAGGAACAGCACTGCTAGTAC 59.769 50.000 2.39 0.00 36.40 2.73
6473 7348 2.493675 CTGAGGAACAGCACTGCTAGTA 59.506 50.000 2.39 0.00 39.86 1.82
6474 7349 1.274728 CTGAGGAACAGCACTGCTAGT 59.725 52.381 2.39 1.89 39.86 2.57
6475 7350 2.007360 CTGAGGAACAGCACTGCTAG 57.993 55.000 2.39 1.25 39.86 3.42
6498 7373 5.455326 CCCAGGACCATATCGATCTCTTTTT 60.455 44.000 0.00 0.00 0.00 1.94
6499 7374 4.040952 CCCAGGACCATATCGATCTCTTTT 59.959 45.833 0.00 0.00 0.00 2.27
6500 7375 3.580458 CCCAGGACCATATCGATCTCTTT 59.420 47.826 0.00 0.00 0.00 2.52
6501 7376 3.169099 CCCAGGACCATATCGATCTCTT 58.831 50.000 0.00 0.00 0.00 2.85
6502 7377 2.380249 TCCCAGGACCATATCGATCTCT 59.620 50.000 0.00 0.00 0.00 3.10
6503 7378 2.808919 TCCCAGGACCATATCGATCTC 58.191 52.381 0.00 0.00 0.00 2.75
6504 7379 3.169099 CTTCCCAGGACCATATCGATCT 58.831 50.000 0.00 0.00 0.00 2.75
6505 7380 2.354203 GCTTCCCAGGACCATATCGATC 60.354 54.545 0.00 0.00 0.00 3.69
6506 7381 1.625818 GCTTCCCAGGACCATATCGAT 59.374 52.381 2.16 2.16 0.00 3.59
6507 7382 1.048601 GCTTCCCAGGACCATATCGA 58.951 55.000 0.00 0.00 0.00 3.59
6508 7383 1.001406 GAGCTTCCCAGGACCATATCG 59.999 57.143 0.00 0.00 0.00 2.92
6509 7384 2.050144 TGAGCTTCCCAGGACCATATC 58.950 52.381 0.00 0.00 0.00 1.63
6510 7385 2.196742 TGAGCTTCCCAGGACCATAT 57.803 50.000 0.00 0.00 0.00 1.78
6511 7386 1.770658 CATGAGCTTCCCAGGACCATA 59.229 52.381 0.00 0.00 0.00 2.74
6512 7387 0.549950 CATGAGCTTCCCAGGACCAT 59.450 55.000 0.00 0.00 0.00 3.55
6513 7388 0.842030 ACATGAGCTTCCCAGGACCA 60.842 55.000 0.00 0.00 0.00 4.02
6514 7389 1.139853 CTACATGAGCTTCCCAGGACC 59.860 57.143 0.00 0.00 0.00 4.46
6515 7390 2.111384 TCTACATGAGCTTCCCAGGAC 58.889 52.381 0.00 0.00 0.00 3.85
6516 7391 2.550277 TCTACATGAGCTTCCCAGGA 57.450 50.000 0.00 0.00 0.00 3.86
6517 7392 4.155709 TCTATCTACATGAGCTTCCCAGG 58.844 47.826 0.00 0.00 0.00 4.45
6518 7393 5.105392 GGATCTATCTACATGAGCTTCCCAG 60.105 48.000 0.00 0.00 0.00 4.45
6519 7394 4.774726 GGATCTATCTACATGAGCTTCCCA 59.225 45.833 0.00 0.00 0.00 4.37
6520 7395 4.774726 TGGATCTATCTACATGAGCTTCCC 59.225 45.833 0.00 0.00 0.00 3.97
6521 7396 5.991933 TGGATCTATCTACATGAGCTTCC 57.008 43.478 0.00 0.00 0.00 3.46
6522 7397 7.225784 TCTTGGATCTATCTACATGAGCTTC 57.774 40.000 0.00 0.00 0.00 3.86
6523 7398 6.211184 CCTCTTGGATCTATCTACATGAGCTT 59.789 42.308 0.00 0.00 35.20 3.74
6527 7402 5.336945 CCCCTCTTGGATCTATCTACATGA 58.663 45.833 0.00 0.00 35.39 3.07
6556 7431 7.481483 CGTACACAATTGTTAAATGATCAGGTG 59.519 37.037 8.77 0.00 37.15 4.00
6568 7443 8.727910 TGGCAAATTATACGTACACAATTGTTA 58.272 29.630 8.77 0.00 37.15 2.41
6569 7444 7.539366 GTGGCAAATTATACGTACACAATTGTT 59.461 33.333 8.77 3.54 37.15 2.83
6570 7445 7.024768 GTGGCAAATTATACGTACACAATTGT 58.975 34.615 4.92 4.92 40.02 2.71
6571 7446 6.470877 GGTGGCAAATTATACGTACACAATTG 59.529 38.462 3.24 3.24 0.00 2.32
6572 7447 6.376018 AGGTGGCAAATTATACGTACACAATT 59.624 34.615 0.00 1.71 0.00 2.32
6573 7448 5.883673 AGGTGGCAAATTATACGTACACAAT 59.116 36.000 0.00 0.00 0.00 2.71
6574 7449 5.122554 CAGGTGGCAAATTATACGTACACAA 59.877 40.000 0.00 0.00 0.00 3.33
6575 7450 4.632251 CAGGTGGCAAATTATACGTACACA 59.368 41.667 0.00 0.00 0.00 3.72
6576 7451 4.495184 GCAGGTGGCAAATTATACGTACAC 60.495 45.833 0.00 0.00 43.97 2.90
6577 7452 3.623960 GCAGGTGGCAAATTATACGTACA 59.376 43.478 0.00 0.00 43.97 2.90
6578 7453 4.205323 GCAGGTGGCAAATTATACGTAC 57.795 45.455 0.00 0.00 43.97 3.67
6610 7485 1.543944 GGGACCCCAAAAGGCACATG 61.544 60.000 0.00 0.00 35.81 3.21
6622 7497 1.700186 GGTCAATCAGATAGGGACCCC 59.300 57.143 7.00 1.17 41.67 4.95
6669 7544 6.314648 GGGAAATCATTTTTCTTTCAGCCATC 59.685 38.462 0.00 0.00 31.91 3.51
6686 7561 1.561542 GCCTCAGGAGAAGGGAAATCA 59.438 52.381 0.00 0.00 0.00 2.57
6694 7569 1.197430 ACCACTGGCCTCAGGAGAAG 61.197 60.000 3.32 0.00 44.99 2.85
6714 7589 3.491619 CGTCACATTCACCCTCCAGATAG 60.492 52.174 0.00 0.00 0.00 2.08
6744 7619 5.121380 AGAAACTGATATGTGATTGGGCT 57.879 39.130 0.00 0.00 0.00 5.19
6745 7620 5.357878 TGAAGAAACTGATATGTGATTGGGC 59.642 40.000 0.00 0.00 0.00 5.36
6771 7646 0.682209 ATCACAACAGGCATCAGGGC 60.682 55.000 0.00 0.00 43.80 5.19
6776 7651 1.293924 CCGAGATCACAACAGGCATC 58.706 55.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.