Multiple sequence alignment - TraesCS6B01G166700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G166700 chr6B 100.000 4747 0 0 1 4747 174565052 174569798 0.000000e+00 8767.0
1 TraesCS6B01G166700 chr6B 98.503 668 8 2 1 667 171694948 171695614 0.000000e+00 1177.0
2 TraesCS6B01G166700 chr6B 79.819 1546 212 57 2251 3739 11209948 11208446 0.000000e+00 1035.0
3 TraesCS6B01G166700 chr6B 81.720 1198 177 27 940 2123 11211218 11210049 0.000000e+00 961.0
4 TraesCS6B01G166700 chr6B 79.381 1227 210 25 915 2123 97816161 97817362 0.000000e+00 824.0
5 TraesCS6B01G166700 chr6B 78.307 1134 199 25 1011 2123 98676706 98677813 0.000000e+00 688.0
6 TraesCS6B01G166700 chr6B 77.923 1146 210 22 998 2123 98605381 98606503 0.000000e+00 675.0
7 TraesCS6B01G166700 chr6B 77.720 1149 205 28 998 2123 98688844 98689964 0.000000e+00 656.0
8 TraesCS6B01G166700 chr6B 81.650 703 109 16 2249 2940 97817401 97818094 2.480000e-157 566.0
9 TraesCS6B01G166700 chr6B 77.438 687 115 30 2251 2924 11259740 11259081 1.610000e-99 374.0
10 TraesCS6B01G166700 chr6B 74.909 825 163 22 998 1802 98659253 98660053 2.120000e-88 337.0
11 TraesCS6B01G166700 chr6B 85.015 327 49 0 1797 2123 98665768 98666094 2.740000e-87 333.0
12 TraesCS6B01G166700 chr6B 78.137 526 84 12 915 1428 97794786 97795292 5.970000e-79 305.0
13 TraesCS6B01G166700 chr6B 75.728 618 130 12 998 1611 11261011 11260410 4.650000e-75 292.0
14 TraesCS6B01G166700 chr6B 76.347 427 78 18 2256 2674 11242198 11241787 1.730000e-49 207.0
15 TraesCS6B01G166700 chr6B 93.023 43 3 0 4700 4742 97819100 97819142 3.970000e-06 63.9
16 TraesCS6B01G166700 chr6B 93.023 43 3 0 4700 4742 98409291 98409333 3.970000e-06 63.9
17 TraesCS6B01G166700 chr6B 93.023 43 3 0 4700 4742 98452493 98452535 3.970000e-06 63.9
18 TraesCS6B01G166700 chr6B 93.023 43 3 0 4700 4742 98520484 98520526 3.970000e-06 63.9
19 TraesCS6B01G166700 chr6B 93.023 43 3 0 4700 4742 98608023 98608065 3.970000e-06 63.9
20 TraesCS6B01G166700 chr6B 93.023 43 3 0 4700 4742 98667996 98668038 3.970000e-06 63.9
21 TraesCS6B01G166700 chr6B 93.023 43 3 0 4700 4742 98679712 98679754 3.970000e-06 63.9
22 TraesCS6B01G166700 chr6B 90.698 43 4 0 4700 4742 98691866 98691908 1.850000e-04 58.4
23 TraesCS6B01G166700 chr6A 98.642 957 13 0 3740 4696 607415403 607414447 0.000000e+00 1696.0
24 TraesCS6B01G166700 chr6A 98.225 958 15 2 3740 4696 607417017 607416061 0.000000e+00 1674.0
25 TraesCS6B01G166700 chr6A 98.119 957 18 0 3740 4696 607413789 607412833 0.000000e+00 1668.0
26 TraesCS6B01G166700 chr6A 98.496 665 8 2 4 667 560645246 560644583 0.000000e+00 1171.0
27 TraesCS6B01G166700 chr6A 84.634 833 119 9 1294 2123 5240198 5239372 0.000000e+00 821.0
28 TraesCS6B01G166700 chr6A 78.280 686 111 31 2251 2924 5295923 5295264 1.590000e-109 407.0
29 TraesCS6B01G166700 chr6A 84.653 404 50 8 1731 2125 5296422 5296022 4.450000e-105 392.0
30 TraesCS6B01G166700 chr6A 77.636 626 116 14 998 1611 5297206 5296593 4.520000e-95 359.0
31 TraesCS6B01G166700 chr5B 98.137 966 15 2 3740 4704 451627258 451626295 0.000000e+00 1681.0
32 TraesCS6B01G166700 chr5B 98.328 957 14 1 3740 4696 451628870 451627916 0.000000e+00 1677.0
33 TraesCS6B01G166700 chr5B 94.793 749 32 5 3740 4483 38399524 38398778 0.000000e+00 1160.0
34 TraesCS6B01G166700 chr7B 98.328 957 15 1 3740 4696 470839744 470838789 0.000000e+00 1677.0
35 TraesCS6B01G166700 chr7B 97.055 747 17 5 3740 4483 291744182 291743438 0.000000e+00 1253.0
36 TraesCS6B01G166700 chr7B 98.653 668 6 2 1 666 282365188 282365854 0.000000e+00 1181.0
37 TraesCS6B01G166700 chr4B 98.123 959 16 1 3739 4697 207314129 207313173 0.000000e+00 1670.0
38 TraesCS6B01G166700 chr2A 98.801 667 7 1 1 667 205912644 205913309 0.000000e+00 1186.0
39 TraesCS6B01G166700 chr2A 98.797 665 7 1 4 668 218119356 218118693 0.000000e+00 1182.0
40 TraesCS6B01G166700 chrUn 98.222 675 10 2 1 675 13811293 13811965 0.000000e+00 1179.0
41 TraesCS6B01G166700 chrUn 81.803 1198 176 27 940 2123 231206906 231208075 0.000000e+00 966.0
42 TraesCS6B01G166700 chrUn 79.232 1146 204 20 998 2123 21369777 21368646 0.000000e+00 767.0
43 TraesCS6B01G166700 chr3A 98.080 677 12 1 4 679 355268274 355267598 0.000000e+00 1177.0
44 TraesCS6B01G166700 chr1A 98.494 664 9 1 4 667 456933110 456932448 0.000000e+00 1170.0
45 TraesCS6B01G166700 chr1A 97.929 676 9 3 5 676 319189204 319188530 0.000000e+00 1166.0
46 TraesCS6B01G166700 chr2B 92.051 390 27 3 4311 4696 189760811 189760422 3.230000e-151 545.0
47 TraesCS6B01G166700 chr2B 91.162 396 30 4 4311 4701 189759242 189758847 2.510000e-147 532.0
48 TraesCS6B01G166700 chr2B 91.011 89 8 0 1838 1926 694748436 694748348 2.320000e-23 121.0
49 TraesCS6B01G166700 chr2B 91.011 89 8 0 1838 1926 694777142 694777054 2.320000e-23 121.0
50 TraesCS6B01G166700 chr6D 74.844 1121 190 56 2478 3562 5888910 5887846 1.580000e-114 424.0
51 TraesCS6B01G166700 chr6D 78.311 687 115 27 2251 2924 5911459 5910794 3.420000e-111 412.0
52 TraesCS6B01G166700 chr6D 83.991 431 52 9 1703 2123 5911989 5911566 9.570000e-107 398.0
53 TraesCS6B01G166700 chr7D 79.474 380 65 7 1732 2100 30958347 30957970 1.690000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G166700 chr6B 174565052 174569798 4746 False 8767.000000 8767 100.000000 1 4747 1 chr6B.!!$F7 4746
1 TraesCS6B01G166700 chr6B 171694948 171695614 666 False 1177.000000 1177 98.503000 1 667 1 chr6B.!!$F6 666
2 TraesCS6B01G166700 chr6B 11208446 11211218 2772 True 998.000000 1035 80.769500 940 3739 2 chr6B.!!$R2 2799
3 TraesCS6B01G166700 chr6B 97816161 97819142 2981 False 484.633333 824 84.684667 915 4742 3 chr6B.!!$F8 3827
4 TraesCS6B01G166700 chr6B 98676706 98679754 3048 False 375.950000 688 85.665000 1011 4742 2 chr6B.!!$F11 3731
5 TraesCS6B01G166700 chr6B 98605381 98608065 2684 False 369.450000 675 85.473000 998 4742 2 chr6B.!!$F9 3744
6 TraesCS6B01G166700 chr6B 98688844 98691908 3064 False 357.200000 656 84.209000 998 4742 2 chr6B.!!$F12 3744
7 TraesCS6B01G166700 chr6B 98659253 98660053 800 False 337.000000 337 74.909000 998 1802 1 chr6B.!!$F5 804
8 TraesCS6B01G166700 chr6B 11259081 11261011 1930 True 333.000000 374 76.583000 998 2924 2 chr6B.!!$R3 1926
9 TraesCS6B01G166700 chr6B 97794786 97795292 506 False 305.000000 305 78.137000 915 1428 1 chr6B.!!$F1 513
10 TraesCS6B01G166700 chr6A 607412833 607417017 4184 True 1679.333333 1696 98.328667 3740 4696 3 chr6A.!!$R4 956
11 TraesCS6B01G166700 chr6A 560644583 560645246 663 True 1171.000000 1171 98.496000 4 667 1 chr6A.!!$R2 663
12 TraesCS6B01G166700 chr6A 5239372 5240198 826 True 821.000000 821 84.634000 1294 2123 1 chr6A.!!$R1 829
13 TraesCS6B01G166700 chr6A 5295264 5297206 1942 True 386.000000 407 80.189667 998 2924 3 chr6A.!!$R3 1926
14 TraesCS6B01G166700 chr5B 451626295 451628870 2575 True 1679.000000 1681 98.232500 3740 4704 2 chr5B.!!$R2 964
15 TraesCS6B01G166700 chr5B 38398778 38399524 746 True 1160.000000 1160 94.793000 3740 4483 1 chr5B.!!$R1 743
16 TraesCS6B01G166700 chr7B 470838789 470839744 955 True 1677.000000 1677 98.328000 3740 4696 1 chr7B.!!$R2 956
17 TraesCS6B01G166700 chr7B 291743438 291744182 744 True 1253.000000 1253 97.055000 3740 4483 1 chr7B.!!$R1 743
18 TraesCS6B01G166700 chr7B 282365188 282365854 666 False 1181.000000 1181 98.653000 1 666 1 chr7B.!!$F1 665
19 TraesCS6B01G166700 chr4B 207313173 207314129 956 True 1670.000000 1670 98.123000 3739 4697 1 chr4B.!!$R1 958
20 TraesCS6B01G166700 chr2A 205912644 205913309 665 False 1186.000000 1186 98.801000 1 667 1 chr2A.!!$F1 666
21 TraesCS6B01G166700 chr2A 218118693 218119356 663 True 1182.000000 1182 98.797000 4 668 1 chr2A.!!$R1 664
22 TraesCS6B01G166700 chrUn 13811293 13811965 672 False 1179.000000 1179 98.222000 1 675 1 chrUn.!!$F1 674
23 TraesCS6B01G166700 chrUn 231206906 231208075 1169 False 966.000000 966 81.803000 940 2123 1 chrUn.!!$F2 1183
24 TraesCS6B01G166700 chrUn 21368646 21369777 1131 True 767.000000 767 79.232000 998 2123 1 chrUn.!!$R1 1125
25 TraesCS6B01G166700 chr3A 355267598 355268274 676 True 1177.000000 1177 98.080000 4 679 1 chr3A.!!$R1 675
26 TraesCS6B01G166700 chr1A 456932448 456933110 662 True 1170.000000 1170 98.494000 4 667 1 chr1A.!!$R2 663
27 TraesCS6B01G166700 chr1A 319188530 319189204 674 True 1166.000000 1166 97.929000 5 676 1 chr1A.!!$R1 671
28 TraesCS6B01G166700 chr2B 189758847 189760811 1964 True 538.500000 545 91.606500 4311 4701 2 chr2B.!!$R3 390
29 TraesCS6B01G166700 chr6D 5887846 5888910 1064 True 424.000000 424 74.844000 2478 3562 1 chr6D.!!$R1 1084
30 TraesCS6B01G166700 chr6D 5910794 5911989 1195 True 405.000000 412 81.151000 1703 2924 2 chr6D.!!$R2 1221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 699 0.034756 AAAAAGGGCAAACCATCCGC 59.965 50.0 0.00 0.0 43.89 5.54 F
809 816 0.036010 CAGAGGCGGTTTGGAGACAT 60.036 55.0 0.00 0.0 42.32 3.06 F
2651 2767 0.035881 CATCCACCGCCTATGCTCAT 59.964 55.0 0.00 0.0 34.43 2.90 F
3514 4303 0.179119 CCGGTCGGGATACACTTCAC 60.179 60.0 0.74 0.0 38.47 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2468 2578 0.036875 GACTGGGGGAAGTGGAAGTG 59.963 60.000 0.00 0.0 0.00 3.16 R
2700 2818 0.742990 GCGGACCCGATCATTCACAA 60.743 55.000 13.24 0.0 42.83 3.33 R
3692 4481 0.036388 TCATGCTCAAGGAACCCGTC 60.036 55.000 0.00 0.0 0.00 4.79 R
4506 11713 2.223479 ACTCACGCGCAAAACAATTTCT 60.223 40.909 5.73 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 155 7.068686 AGTTTTAATAGGGGATCTGTAGAGC 57.931 40.000 0.00 0.00 0.00 4.09
307 314 7.902920 AAATGTCTATTTTGCCTCCATACAT 57.097 32.000 0.00 0.00 32.70 2.29
692 699 0.034756 AAAAAGGGCAAACCATCCGC 59.965 50.000 0.00 0.00 43.89 5.54
693 700 2.153547 AAAAGGGCAAACCATCCGCG 62.154 55.000 0.00 0.00 43.89 6.46
694 701 3.860930 AAGGGCAAACCATCCGCGT 62.861 57.895 4.92 0.00 43.89 6.01
695 702 3.370231 GGGCAAACCATCCGCGTT 61.370 61.111 4.92 0.00 39.85 4.84
696 703 2.041686 GGGCAAACCATCCGCGTTA 61.042 57.895 4.92 0.00 39.85 3.18
697 704 1.135939 GGCAAACCATCCGCGTTAC 59.864 57.895 4.92 0.00 35.26 2.50
698 705 1.303091 GGCAAACCATCCGCGTTACT 61.303 55.000 4.92 0.00 35.26 2.24
699 706 1.361793 GCAAACCATCCGCGTTACTA 58.638 50.000 4.92 0.00 0.00 1.82
700 707 1.326548 GCAAACCATCCGCGTTACTAG 59.673 52.381 4.92 0.00 0.00 2.57
701 708 1.931172 CAAACCATCCGCGTTACTAGG 59.069 52.381 4.92 0.21 0.00 3.02
702 709 0.179092 AACCATCCGCGTTACTAGGC 60.179 55.000 4.92 0.00 0.00 3.93
703 710 1.300697 CCATCCGCGTTACTAGGCC 60.301 63.158 4.92 0.00 31.55 5.19
704 711 1.440060 CATCCGCGTTACTAGGCCA 59.560 57.895 5.01 0.00 31.55 5.36
705 712 0.597637 CATCCGCGTTACTAGGCCAG 60.598 60.000 5.01 2.64 31.55 4.85
706 713 2.365095 ATCCGCGTTACTAGGCCAGC 62.365 60.000 5.01 0.00 31.55 4.85
707 714 2.585247 CGCGTTACTAGGCCAGCC 60.585 66.667 5.01 0.00 31.55 4.85
708 715 2.585247 GCGTTACTAGGCCAGCCG 60.585 66.667 5.01 5.46 41.95 5.52
709 716 2.890371 CGTTACTAGGCCAGCCGT 59.110 61.111 5.01 0.00 41.95 5.68
710 717 1.226888 CGTTACTAGGCCAGCCGTC 60.227 63.158 5.01 0.00 41.95 4.79
711 718 1.226888 GTTACTAGGCCAGCCGTCG 60.227 63.158 5.01 0.00 41.95 5.12
712 719 1.679977 TTACTAGGCCAGCCGTCGT 60.680 57.895 5.01 4.56 41.95 4.34
713 720 1.660560 TTACTAGGCCAGCCGTCGTC 61.661 60.000 5.01 0.00 41.95 4.20
714 721 4.208686 CTAGGCCAGCCGTCGTCC 62.209 72.222 5.01 0.00 41.95 4.79
726 733 3.923013 TCGTCCGGCGATTAGGAA 58.077 55.556 9.30 0.00 45.68 3.36
727 734 2.422303 TCGTCCGGCGATTAGGAAT 58.578 52.632 9.30 0.00 45.68 3.01
728 735 0.313043 TCGTCCGGCGATTAGGAATC 59.687 55.000 9.30 0.00 45.68 2.52
752 759 5.149977 GGTACGGACGACATATAAGTAAGC 58.850 45.833 0.00 0.00 0.00 3.09
753 760 4.234530 ACGGACGACATATAAGTAAGCC 57.765 45.455 0.00 0.00 0.00 4.35
754 761 3.005155 ACGGACGACATATAAGTAAGCCC 59.995 47.826 0.00 0.00 0.00 5.19
755 762 3.255149 CGGACGACATATAAGTAAGCCCT 59.745 47.826 0.00 0.00 0.00 5.19
756 763 4.557205 GGACGACATATAAGTAAGCCCTG 58.443 47.826 0.00 0.00 0.00 4.45
757 764 4.280174 GGACGACATATAAGTAAGCCCTGA 59.720 45.833 0.00 0.00 0.00 3.86
758 765 5.221382 GGACGACATATAAGTAAGCCCTGAA 60.221 44.000 0.00 0.00 0.00 3.02
759 766 5.844004 ACGACATATAAGTAAGCCCTGAAG 58.156 41.667 0.00 0.00 0.00 3.02
760 767 5.221461 ACGACATATAAGTAAGCCCTGAAGG 60.221 44.000 0.00 0.00 39.47 3.46
772 779 2.044123 CCTGAAGGGGAAGAAATCGG 57.956 55.000 0.00 0.00 0.00 4.18
773 780 1.559682 CCTGAAGGGGAAGAAATCGGA 59.440 52.381 0.00 0.00 0.00 4.55
774 781 2.420687 CCTGAAGGGGAAGAAATCGGAG 60.421 54.545 0.00 0.00 0.00 4.63
775 782 2.237392 CTGAAGGGGAAGAAATCGGAGT 59.763 50.000 0.00 0.00 0.00 3.85
776 783 2.236395 TGAAGGGGAAGAAATCGGAGTC 59.764 50.000 0.00 0.00 0.00 3.36
777 784 1.205055 AGGGGAAGAAATCGGAGTCC 58.795 55.000 0.00 0.00 0.00 3.85
788 795 3.851128 GGAGTCCGGCCAGGCTAC 61.851 72.222 12.43 7.68 40.77 3.58
789 796 4.208686 GAGTCCGGCCAGGCTACG 62.209 72.222 12.43 7.31 40.77 3.51
794 801 4.880537 CGGCCAGGCTACGCAGAG 62.881 72.222 12.43 0.00 0.00 3.35
795 802 4.537433 GGCCAGGCTACGCAGAGG 62.537 72.222 12.43 0.00 0.00 3.69
806 813 2.347490 GCAGAGGCGGTTTGGAGA 59.653 61.111 0.00 0.00 0.00 3.71
807 814 2.035442 GCAGAGGCGGTTTGGAGAC 61.035 63.158 0.00 0.00 0.00 3.36
808 815 1.371183 CAGAGGCGGTTTGGAGACA 59.629 57.895 0.00 0.00 39.83 3.41
809 816 0.036010 CAGAGGCGGTTTGGAGACAT 60.036 55.000 0.00 0.00 42.32 3.06
810 817 1.207089 CAGAGGCGGTTTGGAGACATA 59.793 52.381 0.00 0.00 42.32 2.29
811 818 2.119495 AGAGGCGGTTTGGAGACATAT 58.881 47.619 0.00 0.00 42.32 1.78
812 819 2.505819 AGAGGCGGTTTGGAGACATATT 59.494 45.455 0.00 0.00 42.32 1.28
813 820 3.054361 AGAGGCGGTTTGGAGACATATTT 60.054 43.478 0.00 0.00 42.32 1.40
814 821 3.016736 AGGCGGTTTGGAGACATATTTG 58.983 45.455 0.00 0.00 42.32 2.32
815 822 2.099098 GGCGGTTTGGAGACATATTTGG 59.901 50.000 0.00 0.00 42.32 3.28
816 823 2.099098 GCGGTTTGGAGACATATTTGGG 59.901 50.000 0.00 0.00 42.32 4.12
817 824 2.099098 CGGTTTGGAGACATATTTGGGC 59.901 50.000 0.00 0.00 42.32 5.36
818 825 2.430694 GGTTTGGAGACATATTTGGGCC 59.569 50.000 0.00 0.00 42.32 5.80
819 826 2.430694 GTTTGGAGACATATTTGGGCCC 59.569 50.000 17.59 17.59 42.32 5.80
820 827 1.303898 TGGAGACATATTTGGGCCCA 58.696 50.000 24.45 24.45 33.40 5.36
821 828 1.643286 TGGAGACATATTTGGGCCCAA 59.357 47.619 34.07 34.07 33.40 4.12
822 829 2.043664 TGGAGACATATTTGGGCCCAAA 59.956 45.455 44.04 44.04 42.21 3.28
823 830 2.430694 GGAGACATATTTGGGCCCAAAC 59.569 50.000 44.79 32.52 46.80 2.93
824 831 2.430694 GAGACATATTTGGGCCCAAACC 59.569 50.000 44.79 30.24 46.80 3.27
833 840 4.344865 GCCCAAACCCAGAGGCGA 62.345 66.667 0.00 0.00 35.30 5.54
834 841 2.045926 CCCAAACCCAGAGGCGAG 60.046 66.667 0.00 0.00 36.11 5.03
835 842 2.045926 CCAAACCCAGAGGCGAGG 60.046 66.667 0.00 0.00 36.11 4.63
836 843 2.750350 CAAACCCAGAGGCGAGGT 59.250 61.111 0.00 0.00 36.11 3.85
837 844 1.672356 CAAACCCAGAGGCGAGGTG 60.672 63.158 0.00 0.00 36.11 4.00
838 845 2.895424 AAACCCAGAGGCGAGGTGG 61.895 63.158 0.00 0.00 36.11 4.61
839 846 4.640690 ACCCAGAGGCGAGGTGGT 62.641 66.667 0.00 0.00 36.11 4.16
840 847 3.322466 CCCAGAGGCGAGGTGGTT 61.322 66.667 0.00 0.00 0.00 3.67
841 848 2.750350 CCAGAGGCGAGGTGGTTT 59.250 61.111 0.00 0.00 0.00 3.27
842 849 1.550130 CCCAGAGGCGAGGTGGTTTA 61.550 60.000 0.00 0.00 0.00 2.01
843 850 0.108138 CCAGAGGCGAGGTGGTTTAG 60.108 60.000 0.00 0.00 0.00 1.85
844 851 0.108138 CAGAGGCGAGGTGGTTTAGG 60.108 60.000 0.00 0.00 0.00 2.69
845 852 0.544595 AGAGGCGAGGTGGTTTAGGT 60.545 55.000 0.00 0.00 0.00 3.08
846 853 0.391263 GAGGCGAGGTGGTTTAGGTG 60.391 60.000 0.00 0.00 0.00 4.00
847 854 1.376812 GGCGAGGTGGTTTAGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
848 855 1.376812 GCGAGGTGGTTTAGGTGGG 60.377 63.158 0.00 0.00 0.00 4.61
849 856 1.833787 GCGAGGTGGTTTAGGTGGGA 61.834 60.000 0.00 0.00 0.00 4.37
850 857 0.249398 CGAGGTGGTTTAGGTGGGAG 59.751 60.000 0.00 0.00 0.00 4.30
851 858 1.652947 GAGGTGGTTTAGGTGGGAGA 58.347 55.000 0.00 0.00 0.00 3.71
852 859 1.555533 GAGGTGGTTTAGGTGGGAGAG 59.444 57.143 0.00 0.00 0.00 3.20
853 860 1.151413 AGGTGGTTTAGGTGGGAGAGA 59.849 52.381 0.00 0.00 0.00 3.10
854 861 1.555533 GGTGGTTTAGGTGGGAGAGAG 59.444 57.143 0.00 0.00 0.00 3.20
855 862 2.537143 GTGGTTTAGGTGGGAGAGAGA 58.463 52.381 0.00 0.00 0.00 3.10
856 863 2.904434 GTGGTTTAGGTGGGAGAGAGAA 59.096 50.000 0.00 0.00 0.00 2.87
857 864 3.326880 GTGGTTTAGGTGGGAGAGAGAAA 59.673 47.826 0.00 0.00 0.00 2.52
858 865 3.977999 TGGTTTAGGTGGGAGAGAGAAAA 59.022 43.478 0.00 0.00 0.00 2.29
859 866 4.041691 TGGTTTAGGTGGGAGAGAGAAAAG 59.958 45.833 0.00 0.00 0.00 2.27
860 867 4.565861 GGTTTAGGTGGGAGAGAGAAAAGG 60.566 50.000 0.00 0.00 0.00 3.11
861 868 2.723530 AGGTGGGAGAGAGAAAAGGA 57.276 50.000 0.00 0.00 0.00 3.36
862 869 2.545810 AGGTGGGAGAGAGAAAAGGAG 58.454 52.381 0.00 0.00 0.00 3.69
863 870 1.557371 GGTGGGAGAGAGAAAAGGAGG 59.443 57.143 0.00 0.00 0.00 4.30
864 871 2.541466 GTGGGAGAGAGAAAAGGAGGA 58.459 52.381 0.00 0.00 0.00 3.71
865 872 2.499693 GTGGGAGAGAGAAAAGGAGGAG 59.500 54.545 0.00 0.00 0.00 3.69
866 873 2.115427 GGGAGAGAGAAAAGGAGGAGG 58.885 57.143 0.00 0.00 0.00 4.30
867 874 2.292587 GGGAGAGAGAAAAGGAGGAGGA 60.293 54.545 0.00 0.00 0.00 3.71
868 875 3.031013 GGAGAGAGAAAAGGAGGAGGAG 58.969 54.545 0.00 0.00 0.00 3.69
869 876 3.565670 GGAGAGAGAAAAGGAGGAGGAGT 60.566 52.174 0.00 0.00 0.00 3.85
870 877 4.093743 GAGAGAGAAAAGGAGGAGGAGTT 58.906 47.826 0.00 0.00 0.00 3.01
871 878 3.837731 AGAGAGAAAAGGAGGAGGAGTTG 59.162 47.826 0.00 0.00 0.00 3.16
872 879 2.909662 AGAGAAAAGGAGGAGGAGTTGG 59.090 50.000 0.00 0.00 0.00 3.77
873 880 2.907042 GAGAAAAGGAGGAGGAGTTGGA 59.093 50.000 0.00 0.00 0.00 3.53
874 881 3.521531 GAGAAAAGGAGGAGGAGTTGGAT 59.478 47.826 0.00 0.00 0.00 3.41
875 882 4.699994 AGAAAAGGAGGAGGAGTTGGATA 58.300 43.478 0.00 0.00 0.00 2.59
876 883 5.292815 AGAAAAGGAGGAGGAGTTGGATAT 58.707 41.667 0.00 0.00 0.00 1.63
877 884 5.368230 AGAAAAGGAGGAGGAGTTGGATATC 59.632 44.000 0.00 0.00 0.00 1.63
878 885 3.268034 AGGAGGAGGAGTTGGATATCC 57.732 52.381 15.39 15.39 35.71 2.59
880 887 3.211000 AGGAGGAGGAGTTGGATATCCTT 59.789 47.826 22.35 8.36 46.12 3.36
881 888 3.326297 GGAGGAGGAGTTGGATATCCTTG 59.674 52.174 22.35 0.00 46.12 3.61
882 889 3.970640 GAGGAGGAGTTGGATATCCTTGT 59.029 47.826 22.35 6.66 46.12 3.16
883 890 5.148502 GAGGAGGAGTTGGATATCCTTGTA 58.851 45.833 22.35 0.00 46.12 2.41
884 891 5.731924 AGGAGGAGTTGGATATCCTTGTAT 58.268 41.667 22.35 4.66 46.12 2.29
885 892 6.153924 AGGAGGAGTTGGATATCCTTGTATT 58.846 40.000 22.35 4.86 46.12 1.89
886 893 6.271159 AGGAGGAGTTGGATATCCTTGTATTC 59.729 42.308 22.35 12.70 46.12 1.75
887 894 6.271159 GGAGGAGTTGGATATCCTTGTATTCT 59.729 42.308 22.35 10.84 46.12 2.40
888 895 7.309770 AGGAGTTGGATATCCTTGTATTCTC 57.690 40.000 22.35 16.05 43.62 2.87
889 896 6.846505 AGGAGTTGGATATCCTTGTATTCTCA 59.153 38.462 22.35 0.00 43.62 3.27
890 897 7.348274 AGGAGTTGGATATCCTTGTATTCTCAA 59.652 37.037 22.35 1.71 43.62 3.02
891 898 7.993183 GGAGTTGGATATCCTTGTATTCTCAAA 59.007 37.037 22.35 1.20 36.82 2.69
892 899 9.396022 GAGTTGGATATCCTTGTATTCTCAAAA 57.604 33.333 22.35 1.00 36.82 2.44
893 900 9.753674 AGTTGGATATCCTTGTATTCTCAAAAA 57.246 29.630 22.35 0.56 36.82 1.94
919 926 7.468141 AAAAAGTTGGATATCCTTGTTCCTC 57.532 36.000 22.35 4.61 36.82 3.71
920 927 4.779993 AGTTGGATATCCTTGTTCCTCC 57.220 45.455 22.35 0.00 36.82 4.30
921 928 3.134804 AGTTGGATATCCTTGTTCCTCCG 59.865 47.826 22.35 0.00 36.82 4.63
922 929 2.759355 TGGATATCCTTGTTCCTCCGT 58.241 47.619 22.35 0.00 36.82 4.69
930 937 1.626825 CTTGTTCCTCCGTTCCCCTTA 59.373 52.381 0.00 0.00 0.00 2.69
964 971 2.193517 CCGGACCAACCCACAACA 59.806 61.111 0.00 0.00 34.64 3.33
966 973 0.825840 CCGGACCAACCCACAACAAT 60.826 55.000 0.00 0.00 34.64 2.71
967 974 0.596082 CGGACCAACCCACAACAATC 59.404 55.000 0.00 0.00 34.64 2.67
969 976 1.698506 GACCAACCCACAACAATCCA 58.301 50.000 0.00 0.00 0.00 3.41
970 977 1.613437 GACCAACCCACAACAATCCAG 59.387 52.381 0.00 0.00 0.00 3.86
971 978 1.063266 ACCAACCCACAACAATCCAGT 60.063 47.619 0.00 0.00 0.00 4.00
996 1005 3.394836 GTCTCTCCTTGGCCGCCT 61.395 66.667 11.61 0.00 0.00 5.52
1031 1043 2.354729 CAACCCTTGCCATCCGGA 59.645 61.111 6.61 6.61 0.00 5.14
1089 1102 1.261238 CCCGGCTCAAGGAAGAGTCT 61.261 60.000 0.00 0.00 38.09 3.24
1120 1133 5.764192 AGATCTTATCTGCTGCAGAAAATCC 59.236 40.000 33.31 20.41 44.04 3.01
1127 1140 1.743772 GCTGCAGAAAATCCGCTCCTA 60.744 52.381 20.43 0.00 0.00 2.94
1132 1145 3.372954 CAGAAAATCCGCTCCTACTACG 58.627 50.000 0.00 0.00 0.00 3.51
1142 1155 2.183300 CTACTACGGCAAGGCGCA 59.817 61.111 16.18 1.95 45.17 6.09
1234 1268 2.857152 GTGATCAACAGTCTCATCGAGC 59.143 50.000 0.00 0.00 0.00 5.03
1275 1309 1.199558 GACCGCGACCATAGATCTACC 59.800 57.143 8.23 0.00 0.00 3.18
1278 1312 1.068472 CGCGACCATAGATCTACCACC 60.068 57.143 4.10 0.00 0.00 4.61
1332 1369 2.031919 TCGCTTGACGGCATGGTT 59.968 55.556 6.25 0.00 43.89 3.67
1350 1387 1.001633 GTTGTCTTCCTCACCCGCTTA 59.998 52.381 0.00 0.00 0.00 3.09
1362 1399 0.751643 CCCGCTTATTCCCCAACCTG 60.752 60.000 0.00 0.00 0.00 4.00
1416 1453 1.079127 CAAGGCGGACGTCCTCATT 60.079 57.895 30.92 24.61 32.45 2.57
1440 1477 1.226688 CTGCATCGTCGTGTCGGAT 60.227 57.895 0.00 0.00 0.00 4.18
1443 1480 1.202973 GCATCGTCGTGTCGGATCAG 61.203 60.000 0.00 0.00 0.00 2.90
1444 1481 0.098905 CATCGTCGTGTCGGATCAGT 59.901 55.000 0.00 0.00 0.00 3.41
1450 1487 1.474648 CGTGTCGGATCAGTGCATCG 61.475 60.000 0.00 0.00 0.00 3.84
1496 1542 1.386533 GTCATCAACATGGCCCTCAG 58.613 55.000 0.00 0.00 0.00 3.35
1544 1590 2.181021 CGCCTACCGCTTCGTCTT 59.819 61.111 0.00 0.00 34.21 3.01
1617 1708 2.718731 TTGCACGAACCGCAAAGG 59.281 55.556 0.00 0.00 45.91 3.11
1640 1737 1.595382 GCCGCTCTGACGCCATTAT 60.595 57.895 0.00 0.00 0.00 1.28
1641 1738 1.160329 GCCGCTCTGACGCCATTATT 61.160 55.000 0.00 0.00 0.00 1.40
1652 1749 2.159014 ACGCCATTATTAAGCTCGTCCA 60.159 45.455 0.00 0.00 0.00 4.02
1667 1764 5.243954 AGCTCGTCCATATGCTTAACTATGA 59.756 40.000 0.00 0.00 30.96 2.15
1675 1778 1.066716 TGCTTAACTATGAACCGCCGT 60.067 47.619 0.00 0.00 0.00 5.68
1685 1788 4.675029 ACCGCCGTCCCGTGAAAG 62.675 66.667 0.00 0.00 0.00 2.62
1697 1800 1.609061 CCGTGAAAGAGATGTGTGGCT 60.609 52.381 0.00 0.00 0.00 4.75
1723 1826 1.739562 CGGCTCGCAGAAGCTTCTT 60.740 57.895 26.44 9.31 39.10 2.52
1860 1963 1.377725 CTTCCACCGCAGCCTGATT 60.378 57.895 0.00 0.00 0.00 2.57
1885 1988 3.834799 GCTACTGCTACGGCCCGT 61.835 66.667 15.63 15.63 44.35 5.28
1968 2078 2.370281 TGAAACTCGAGCTGGATGTC 57.630 50.000 13.61 0.00 0.00 3.06
1971 2081 2.306341 AACTCGAGCTGGATGTCATG 57.694 50.000 13.61 0.00 0.00 3.07
2048 2158 1.337728 CCTCTGCACACGTTACCATGA 60.338 52.381 0.00 0.00 0.00 3.07
2049 2159 2.412870 CTCTGCACACGTTACCATGAA 58.587 47.619 0.00 0.00 0.00 2.57
2050 2160 2.139917 TCTGCACACGTTACCATGAAC 58.860 47.619 0.00 0.00 0.00 3.18
2125 2235 0.321564 CGCTGATCCCAACCTTGTGA 60.322 55.000 0.00 0.00 0.00 3.58
2134 2244 4.422057 TCCCAACCTTGTGACTGATACTA 58.578 43.478 0.00 0.00 0.00 1.82
2137 2247 4.935808 CCAACCTTGTGACTGATACTAACC 59.064 45.833 0.00 0.00 0.00 2.85
2138 2248 5.280011 CCAACCTTGTGACTGATACTAACCT 60.280 44.000 0.00 0.00 0.00 3.50
2143 2253 6.295349 CCTTGTGACTGATACTAACCTTGTCT 60.295 42.308 0.00 0.00 0.00 3.41
2147 2257 6.093219 GTGACTGATACTAACCTTGTCTACGA 59.907 42.308 0.00 0.00 0.00 3.43
2196 2306 1.504275 ATGGACCAGCCTCTGCCTTT 61.504 55.000 0.00 0.00 38.69 3.11
2198 2308 1.743252 GACCAGCCTCTGCCTTTCG 60.743 63.158 0.00 0.00 38.69 3.46
2205 2315 0.239347 CCTCTGCCTTTCGTTGCAAG 59.761 55.000 0.00 0.00 36.98 4.01
2206 2316 0.386478 CTCTGCCTTTCGTTGCAAGC 60.386 55.000 0.00 0.00 36.98 4.01
2207 2317 0.819259 TCTGCCTTTCGTTGCAAGCT 60.819 50.000 0.00 0.00 36.98 3.74
2208 2318 0.386478 CTGCCTTTCGTTGCAAGCTC 60.386 55.000 0.00 0.00 36.98 4.09
2209 2319 1.081175 GCCTTTCGTTGCAAGCTCC 60.081 57.895 0.00 0.00 0.00 4.70
2210 2320 1.795170 GCCTTTCGTTGCAAGCTCCA 61.795 55.000 0.00 0.00 0.00 3.86
2211 2321 0.667993 CCTTTCGTTGCAAGCTCCAA 59.332 50.000 0.00 0.00 0.00 3.53
2212 2322 1.066908 CCTTTCGTTGCAAGCTCCAAA 59.933 47.619 0.00 0.00 0.00 3.28
2213 2323 2.119457 CTTTCGTTGCAAGCTCCAAAC 58.881 47.619 0.00 0.00 0.00 2.93
2214 2324 1.388547 TTCGTTGCAAGCTCCAAACT 58.611 45.000 0.00 0.00 0.00 2.66
2215 2325 0.944386 TCGTTGCAAGCTCCAAACTC 59.056 50.000 0.00 0.00 0.00 3.01
2216 2326 0.662619 CGTTGCAAGCTCCAAACTCA 59.337 50.000 0.00 0.00 0.00 3.41
2217 2327 1.065401 CGTTGCAAGCTCCAAACTCAA 59.935 47.619 0.00 0.00 0.00 3.02
2218 2328 2.735823 GTTGCAAGCTCCAAACTCAAG 58.264 47.619 0.00 0.00 0.00 3.02
2223 2333 1.979155 GCTCCAAACTCAAGCCCCC 60.979 63.158 0.00 0.00 0.00 5.40
2239 2349 3.574952 CCCCCAACACTGGTCTCA 58.425 61.111 0.00 0.00 41.72 3.27
2242 2352 0.250467 CCCCAACACTGGTCTCACTG 60.250 60.000 0.00 0.00 41.72 3.66
2243 2353 0.469917 CCCAACACTGGTCTCACTGT 59.530 55.000 0.00 0.00 41.72 3.55
2247 2357 2.628178 CAACACTGGTCTCACTGTAGGA 59.372 50.000 0.00 0.00 0.00 2.94
2263 2373 1.909781 GGACACCCGGACACTGGTA 60.910 63.158 0.73 0.00 31.84 3.25
2326 2436 1.598130 AACCCAGACGCTCAAGCAC 60.598 57.895 2.50 0.00 42.21 4.40
2340 2450 2.103771 TCAAGCACAGCTTCTCACTTCT 59.896 45.455 0.50 0.00 46.77 2.85
2344 2454 2.615912 GCACAGCTTCTCACTTCTTGTT 59.384 45.455 0.00 0.00 0.00 2.83
2346 2456 2.615912 ACAGCTTCTCACTTCTTGTTGC 59.384 45.455 0.00 0.00 0.00 4.17
2347 2457 2.615447 CAGCTTCTCACTTCTTGTTGCA 59.385 45.455 0.00 0.00 0.00 4.08
2353 2463 2.023673 TCACTTCTTGTTGCAAGGTGG 58.976 47.619 0.00 0.00 0.00 4.61
2354 2464 2.023673 CACTTCTTGTTGCAAGGTGGA 58.976 47.619 0.00 0.00 0.00 4.02
2355 2465 2.024414 ACTTCTTGTTGCAAGGTGGAC 58.976 47.619 0.00 0.00 0.00 4.02
2357 2467 0.467290 TCTTGTTGCAAGGTGGACCC 60.467 55.000 0.00 0.00 36.42 4.46
2361 2471 2.448582 TTGCAAGGTGGACCCGAGT 61.449 57.895 0.00 0.00 38.74 4.18
2381 2491 0.673022 CCTGTCTTGTCTCTGCTGCC 60.673 60.000 0.00 0.00 0.00 4.85
2383 2493 1.547820 CTGTCTTGTCTCTGCTGCCTA 59.452 52.381 0.00 0.00 0.00 3.93
2384 2494 2.168106 CTGTCTTGTCTCTGCTGCCTAT 59.832 50.000 0.00 0.00 0.00 2.57
2405 2515 2.603021 TGACTCTCACAAGCTCTCCTT 58.397 47.619 0.00 0.00 0.00 3.36
2413 2523 4.978099 TCACAAGCTCTCCTTTCAAGATT 58.022 39.130 0.00 0.00 0.00 2.40
2415 2525 6.533730 TCACAAGCTCTCCTTTCAAGATTTA 58.466 36.000 0.00 0.00 0.00 1.40
2417 2527 7.173907 TCACAAGCTCTCCTTTCAAGATTTAAG 59.826 37.037 0.00 0.00 0.00 1.85
2418 2528 6.072230 ACAAGCTCTCCTTTCAAGATTTAAGC 60.072 38.462 0.00 0.00 0.00 3.09
2420 2530 4.946772 GCTCTCCTTTCAAGATTTAAGCCT 59.053 41.667 0.00 0.00 0.00 4.58
2441 2551 3.084039 TGCTTGCCAGGTTTCTATCTTG 58.916 45.455 0.00 0.00 0.00 3.02
2445 2555 3.700538 TGCCAGGTTTCTATCTTGCAAT 58.299 40.909 0.00 0.00 30.33 3.56
2446 2556 3.696051 TGCCAGGTTTCTATCTTGCAATC 59.304 43.478 0.00 0.00 30.33 2.67
2450 2560 3.529319 AGGTTTCTATCTTGCAATCCCCT 59.471 43.478 0.00 0.00 0.00 4.79
2464 2574 4.284490 GCAATCCCCTCTATGAGTATGACA 59.716 45.833 0.00 0.00 0.00 3.58
2465 2575 5.221722 GCAATCCCCTCTATGAGTATGACAA 60.222 44.000 0.00 0.00 0.00 3.18
2466 2576 6.462500 CAATCCCCTCTATGAGTATGACAAG 58.538 44.000 0.00 0.00 0.00 3.16
2468 2578 3.007398 CCCCTCTATGAGTATGACAAGGC 59.993 52.174 0.00 0.00 0.00 4.35
2470 2580 4.502259 CCCTCTATGAGTATGACAAGGCAC 60.502 50.000 0.00 0.00 0.00 5.01
2505 2615 1.356398 GTCCCCCTCAAATGTTACCCA 59.644 52.381 0.00 0.00 0.00 4.51
2521 2631 2.179267 CACGTGCAGAGCTAGCGA 59.821 61.111 9.55 0.00 33.85 4.93
2535 2645 2.350964 GCTAGCGAGCCTGTATACAGTC 60.351 54.545 27.07 17.81 43.49 3.51
2586 2696 9.241317 CTGAATAAATATCAACAGATGCCAAAC 57.759 33.333 0.00 0.00 0.00 2.93
2605 2717 1.378646 GGGGTAGGTTTGCTCTGCC 60.379 63.158 0.00 0.00 36.47 4.85
2639 2754 5.841957 ATTGCTAACATTTCTCATCCACC 57.158 39.130 0.00 0.00 0.00 4.61
2651 2767 0.035881 CATCCACCGCCTATGCTCAT 59.964 55.000 0.00 0.00 34.43 2.90
2681 2799 5.512942 TGAATTACAGGATCCCAAGTTCA 57.487 39.130 8.55 9.89 0.00 3.18
2691 2809 5.103771 AGGATCCCAAGTTCAAGCTTCATAT 60.104 40.000 8.55 0.00 0.00 1.78
2700 2818 7.458409 AGTTCAAGCTTCATATGATTTGTGT 57.542 32.000 6.17 0.34 0.00 3.72
2717 2835 1.737793 GTGTTGTGAATGATCGGGTCC 59.262 52.381 0.00 0.00 0.00 4.46
2744 2862 1.072852 GCTCCATGGCCTCCTCATC 59.927 63.158 6.96 0.00 0.00 2.92
2780 2904 1.068127 ACGTCAACTTCGTGGCTACTT 59.932 47.619 0.00 0.00 40.07 2.24
2799 2923 1.152567 CCAAAAGCCCTGGTGGTGA 60.153 57.895 0.00 0.00 36.04 4.02
2806 2930 2.227036 CCCTGGTGGTGAAGCTCCT 61.227 63.158 0.00 0.00 0.00 3.69
2812 2936 3.244582 TGGTGGTGAAGCTCCTACTTTA 58.755 45.455 0.00 0.00 0.00 1.85
2868 2997 1.059584 TCCTTCTGTTGCCCTGTGGA 61.060 55.000 0.00 0.00 0.00 4.02
2875 3004 3.626996 TTGCCCTGTGGATCTGCCG 62.627 63.158 0.00 0.00 40.66 5.69
2906 3395 8.733458 CATGTGCTGGTATGCTATATAAACAAT 58.267 33.333 0.00 0.00 0.00 2.71
2955 3660 5.798015 TCTACTCAGTGTATCTCGTTGTC 57.202 43.478 0.00 0.00 0.00 3.18
2967 3680 9.066939 GTGTATCTCGTTGTCAATGCTATATAG 57.933 37.037 5.30 5.30 0.00 1.31
2997 3738 3.897239 TCCACAACTGACCACTTGATTT 58.103 40.909 0.00 0.00 0.00 2.17
3004 3745 7.543868 CACAACTGACCACTTGATTTTGTTTTA 59.456 33.333 0.00 0.00 0.00 1.52
3005 3746 8.257306 ACAACTGACCACTTGATTTTGTTTTAT 58.743 29.630 0.00 0.00 0.00 1.40
3006 3747 9.097257 CAACTGACCACTTGATTTTGTTTTATT 57.903 29.630 0.00 0.00 0.00 1.40
3038 3779 5.452776 CGTCAGCCTAAACCCTCATATGTAA 60.453 44.000 1.90 0.00 0.00 2.41
3042 3783 6.483640 CAGCCTAAACCCTCATATGTAAAGTC 59.516 42.308 1.90 0.00 0.00 3.01
3045 3786 7.502561 GCCTAAACCCTCATATGTAAAGTCAAT 59.497 37.037 1.90 0.00 0.00 2.57
3096 3840 8.633561 AGTGTCAAAGATAAAAAGGAAAGGAAG 58.366 33.333 0.00 0.00 0.00 3.46
3104 3848 9.593565 AGATAAAAAGGAAAGGAAGAGTTGAAT 57.406 29.630 0.00 0.00 0.00 2.57
3105 3849 9.631452 GATAAAAAGGAAAGGAAGAGTTGAATG 57.369 33.333 0.00 0.00 0.00 2.67
3106 3850 7.423844 AAAAAGGAAAGGAAGAGTTGAATGT 57.576 32.000 0.00 0.00 0.00 2.71
3107 3851 6.641169 AAAGGAAAGGAAGAGTTGAATGTC 57.359 37.500 0.00 0.00 0.00 3.06
3108 3852 5.574970 AGGAAAGGAAGAGTTGAATGTCT 57.425 39.130 0.00 0.00 0.00 3.41
3109 3853 5.946486 AGGAAAGGAAGAGTTGAATGTCTT 58.054 37.500 0.00 0.00 35.67 3.01
3115 3859 4.083057 GGAAGAGTTGAATGTCTTTGCCTC 60.083 45.833 0.00 0.00 33.04 4.70
3180 3934 0.899720 CCATCAAACAGCCTGCCATT 59.100 50.000 0.00 0.00 0.00 3.16
3211 3965 1.749334 GACGCCGGATGATCCCTTCT 61.749 60.000 5.05 0.00 31.13 2.85
3232 3986 2.027285 TCCATCGTGCTCATTTCCTCAA 60.027 45.455 0.00 0.00 0.00 3.02
3243 4000 5.759763 GCTCATTTCCTCAACCAACAAAATT 59.240 36.000 0.00 0.00 0.00 1.82
3244 4001 6.293027 GCTCATTTCCTCAACCAACAAAATTG 60.293 38.462 0.00 0.00 0.00 2.32
3279 4065 6.857437 AATCATCTATGTCGGTCATCCATA 57.143 37.500 0.00 0.00 37.91 2.74
3327 4113 7.999679 CATGGTTTATGTCAACATTCTATGGT 58.000 34.615 0.20 0.00 37.76 3.55
3360 4146 2.622942 TGAAACTTGAAAGCCGCAGAAT 59.377 40.909 0.00 0.00 0.00 2.40
3368 4154 3.378112 TGAAAGCCGCAGAATATTTCCAG 59.622 43.478 0.00 0.00 0.00 3.86
3402 4189 7.220741 TGTTTTTACCTGCATGCAGTTTATA 57.779 32.000 38.22 24.33 42.15 0.98
3404 4191 5.478233 TTTACCTGCATGCAGTTTATACG 57.522 39.130 38.22 25.96 42.15 3.06
3419 4208 8.280497 GCAGTTTATACGGTAACCTTCAATATG 58.720 37.037 0.00 0.00 0.00 1.78
3446 4235 5.475273 AATCATCTAATGTGTTCACAGCG 57.525 39.130 11.24 3.02 0.00 5.18
3454 4243 1.268999 TGTGTTCACAGCGCAAATTCC 60.269 47.619 11.47 0.00 0.00 3.01
3455 4244 1.001378 GTGTTCACAGCGCAAATTCCT 60.001 47.619 11.47 0.00 0.00 3.36
3459 4248 2.499197 TCACAGCGCAAATTCCTTGTA 58.501 42.857 11.47 0.00 37.36 2.41
3497 4286 0.652592 GGACTCGAATTGTGCATCCG 59.347 55.000 0.00 0.00 0.00 4.18
3513 4302 0.323633 TCCGGTCGGGATACACTTCA 60.324 55.000 9.68 0.00 40.94 3.02
3514 4303 0.179119 CCGGTCGGGATACACTTCAC 60.179 60.000 0.74 0.00 38.47 3.18
3539 4328 2.052157 CGTGACTCGGAGTTTGAGAAC 58.948 52.381 12.67 0.00 36.93 3.01
3548 4337 2.508526 GAGTTTGAGAACATGGCCTGT 58.491 47.619 3.32 2.75 40.84 4.00
3564 4353 1.963515 CCTGTGAAAAAGACCCCCTTG 59.036 52.381 0.00 0.00 34.79 3.61
3582 4371 3.028916 GGGTGTGTGTATGCAACCA 57.971 52.632 5.63 0.00 41.86 3.67
3686 4475 4.202245 TGGGCACAAGAGTAAGTATGAC 57.798 45.455 0.00 0.00 0.00 3.06
3692 4481 5.457148 GCACAAGAGTAAGTATGACATCGAG 59.543 44.000 0.00 0.00 0.00 4.04
3694 4483 6.689241 CACAAGAGTAAGTATGACATCGAGAC 59.311 42.308 0.00 0.00 0.00 3.36
3707 4496 1.446272 CGAGACGGGTTCCTTGAGC 60.446 63.158 0.00 0.00 0.00 4.26
3711 4500 0.036388 GACGGGTTCCTTGAGCATGA 60.036 55.000 0.00 0.00 0.00 3.07
3719 4508 5.163612 GGGTTCCTTGAGCATGAAAGAATAC 60.164 44.000 0.00 0.00 0.00 1.89
3720 4509 5.447818 GGTTCCTTGAGCATGAAAGAATACG 60.448 44.000 0.00 0.00 0.00 3.06
4077 6480 8.781951 AGATTTCCTATTTCTATTCTTCCCACA 58.218 33.333 0.00 0.00 0.00 4.17
4124 6527 1.746615 AGGACGTGTGATGCATGGC 60.747 57.895 2.46 0.00 41.43 4.40
4130 6533 1.790123 CGTGTGATGCATGGCGTTTAC 60.790 52.381 2.46 0.00 0.00 2.01
4404 9994 0.802494 GTTCATTGTACGGGCAGGTG 59.198 55.000 0.00 0.00 0.00 4.00
4476 10069 7.040961 CGTATCAAGTTTTGGAGGAACCTTTAA 60.041 37.037 0.00 0.00 39.86 1.52
4506 11713 3.644823 TGTGTTGCGATTTCTCTTCGTA 58.355 40.909 0.00 0.00 38.81 3.43
4533 11740 1.003223 GTTTTGCGCGTGAGTACCTTT 60.003 47.619 8.43 0.00 0.00 3.11
4536 11743 0.531090 TGCGCGTGAGTACCTTTGTT 60.531 50.000 8.43 0.00 0.00 2.83
4697 11904 4.106029 TCGAGGTTCGGTCTTTATCAAG 57.894 45.455 0.00 0.00 40.88 3.02
4701 11908 4.003648 AGGTTCGGTCTTTATCAAGCTTG 58.996 43.478 20.81 20.81 0.00 4.01
4702 11909 3.751698 GGTTCGGTCTTTATCAAGCTTGT 59.248 43.478 25.19 15.13 0.00 3.16
4703 11910 4.378459 GGTTCGGTCTTTATCAAGCTTGTG 60.378 45.833 25.19 11.80 0.00 3.33
4742 11949 4.148079 TGTGGCATTGGAAAATACTGTGA 58.852 39.130 0.00 0.00 0.00 3.58
4743 11950 4.771577 TGTGGCATTGGAAAATACTGTGAT 59.228 37.500 0.00 0.00 0.00 3.06
4744 11951 5.105797 TGTGGCATTGGAAAATACTGTGATC 60.106 40.000 0.00 0.00 0.00 2.92
4745 11952 4.096231 TGGCATTGGAAAATACTGTGATCG 59.904 41.667 0.00 0.00 0.00 3.69
4746 11953 4.096382 GGCATTGGAAAATACTGTGATCGT 59.904 41.667 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
307 314 8.880244 ACCATGATACCAGAATAAACATAGCTA 58.120 33.333 0.00 0.00 0.00 3.32
327 334 6.151985 GGTGGTTGTCATAACAATTACCATGA 59.848 38.462 10.80 0.00 46.58 3.07
600 607 1.693627 ACTATGCGGGAGTGGTAGAG 58.306 55.000 0.00 0.00 0.00 2.43
679 686 1.135939 GTAACGCGGATGGTTTGCC 59.864 57.895 12.47 0.00 0.00 4.52
680 687 1.326548 CTAGTAACGCGGATGGTTTGC 59.673 52.381 12.47 0.00 0.00 3.68
681 688 1.931172 CCTAGTAACGCGGATGGTTTG 59.069 52.381 12.47 0.00 0.00 2.93
682 689 1.741394 GCCTAGTAACGCGGATGGTTT 60.741 52.381 12.47 0.00 0.00 3.27
683 690 0.179092 GCCTAGTAACGCGGATGGTT 60.179 55.000 12.47 0.00 0.00 3.67
684 691 1.440476 GCCTAGTAACGCGGATGGT 59.560 57.895 12.47 0.00 0.00 3.55
685 692 1.300697 GGCCTAGTAACGCGGATGG 60.301 63.158 12.47 4.74 0.00 3.51
686 693 0.597637 CTGGCCTAGTAACGCGGATG 60.598 60.000 12.47 0.00 0.00 3.51
687 694 1.740285 CTGGCCTAGTAACGCGGAT 59.260 57.895 12.47 0.41 0.00 4.18
688 695 3.072486 GCTGGCCTAGTAACGCGGA 62.072 63.158 12.47 0.00 0.00 5.54
689 696 2.585247 GCTGGCCTAGTAACGCGG 60.585 66.667 12.47 0.00 0.00 6.46
690 697 2.585247 GGCTGGCCTAGTAACGCG 60.585 66.667 3.53 3.53 0.00 6.01
691 698 2.585247 CGGCTGGCCTAGTAACGC 60.585 66.667 3.32 0.00 0.00 4.84
692 699 1.226888 GACGGCTGGCCTAGTAACG 60.227 63.158 3.32 8.96 0.00 3.18
693 700 1.226888 CGACGGCTGGCCTAGTAAC 60.227 63.158 3.32 0.00 0.00 2.50
694 701 1.660560 GACGACGGCTGGCCTAGTAA 61.661 60.000 3.32 0.00 0.00 2.24
695 702 2.044650 ACGACGGCTGGCCTAGTA 60.045 61.111 3.32 0.00 0.00 1.82
696 703 3.450115 GACGACGGCTGGCCTAGT 61.450 66.667 3.32 6.62 0.00 2.57
697 704 4.208686 GGACGACGGCTGGCCTAG 62.209 72.222 3.32 0.34 0.00 3.02
710 717 2.810486 GATTCCTAATCGCCGGACG 58.190 57.895 5.05 9.12 45.62 4.79
718 725 2.549754 TCGTCCGTACCGATTCCTAATC 59.450 50.000 0.00 0.00 34.52 1.75
719 726 2.291741 GTCGTCCGTACCGATTCCTAAT 59.708 50.000 0.00 0.00 36.62 1.73
720 727 1.670811 GTCGTCCGTACCGATTCCTAA 59.329 52.381 0.00 0.00 36.62 2.69
721 728 1.299541 GTCGTCCGTACCGATTCCTA 58.700 55.000 0.00 0.00 36.62 2.94
722 729 0.677731 TGTCGTCCGTACCGATTCCT 60.678 55.000 0.00 0.00 36.62 3.36
723 730 0.383231 ATGTCGTCCGTACCGATTCC 59.617 55.000 0.00 0.00 36.62 3.01
724 731 3.549299 ATATGTCGTCCGTACCGATTC 57.451 47.619 0.00 0.00 36.62 2.52
725 732 4.516698 ACTTATATGTCGTCCGTACCGATT 59.483 41.667 0.00 0.00 36.62 3.34
726 733 4.067896 ACTTATATGTCGTCCGTACCGAT 58.932 43.478 0.00 0.00 36.62 4.18
727 734 3.466836 ACTTATATGTCGTCCGTACCGA 58.533 45.455 0.00 0.00 0.00 4.69
728 735 3.885484 ACTTATATGTCGTCCGTACCG 57.115 47.619 0.00 0.00 0.00 4.02
729 736 5.149977 GCTTACTTATATGTCGTCCGTACC 58.850 45.833 0.00 0.00 0.00 3.34
730 737 5.149977 GGCTTACTTATATGTCGTCCGTAC 58.850 45.833 0.00 0.00 0.00 3.67
731 738 4.216257 GGGCTTACTTATATGTCGTCCGTA 59.784 45.833 0.00 0.00 0.00 4.02
732 739 3.005155 GGGCTTACTTATATGTCGTCCGT 59.995 47.826 0.00 0.00 0.00 4.69
733 740 3.255149 AGGGCTTACTTATATGTCGTCCG 59.745 47.826 0.00 0.00 0.00 4.79
734 741 4.280174 TCAGGGCTTACTTATATGTCGTCC 59.720 45.833 0.00 0.00 0.00 4.79
735 742 5.449107 TCAGGGCTTACTTATATGTCGTC 57.551 43.478 0.00 0.00 0.00 4.20
736 743 5.221461 CCTTCAGGGCTTACTTATATGTCGT 60.221 44.000 0.00 0.00 0.00 4.34
737 744 5.230942 CCTTCAGGGCTTACTTATATGTCG 58.769 45.833 0.00 0.00 0.00 4.35
753 760 1.559682 TCCGATTTCTTCCCCTTCAGG 59.440 52.381 0.00 0.00 0.00 3.86
754 761 2.237392 ACTCCGATTTCTTCCCCTTCAG 59.763 50.000 0.00 0.00 0.00 3.02
755 762 2.236395 GACTCCGATTTCTTCCCCTTCA 59.764 50.000 0.00 0.00 0.00 3.02
756 763 2.420269 GGACTCCGATTTCTTCCCCTTC 60.420 54.545 0.00 0.00 0.00 3.46
757 764 1.560146 GGACTCCGATTTCTTCCCCTT 59.440 52.381 0.00 0.00 0.00 3.95
758 765 1.205055 GGACTCCGATTTCTTCCCCT 58.795 55.000 0.00 0.00 0.00 4.79
759 766 3.782632 GGACTCCGATTTCTTCCCC 57.217 57.895 0.00 0.00 0.00 4.81
771 778 3.851128 GTAGCCTGGCCGGACTCC 61.851 72.222 15.09 0.00 33.16 3.85
772 779 4.208686 CGTAGCCTGGCCGGACTC 62.209 72.222 15.09 1.31 33.16 3.36
789 796 2.035442 GTCTCCAAACCGCCTCTGC 61.035 63.158 0.00 0.00 0.00 4.26
790 797 0.036010 ATGTCTCCAAACCGCCTCTG 60.036 55.000 0.00 0.00 0.00 3.35
791 798 1.568504 TATGTCTCCAAACCGCCTCT 58.431 50.000 0.00 0.00 0.00 3.69
792 799 2.622064 ATATGTCTCCAAACCGCCTC 57.378 50.000 0.00 0.00 0.00 4.70
793 800 3.016736 CAAATATGTCTCCAAACCGCCT 58.983 45.455 0.00 0.00 0.00 5.52
794 801 2.099098 CCAAATATGTCTCCAAACCGCC 59.901 50.000 0.00 0.00 0.00 6.13
795 802 2.099098 CCCAAATATGTCTCCAAACCGC 59.901 50.000 0.00 0.00 0.00 5.68
796 803 2.099098 GCCCAAATATGTCTCCAAACCG 59.901 50.000 0.00 0.00 0.00 4.44
797 804 2.430694 GGCCCAAATATGTCTCCAAACC 59.569 50.000 0.00 0.00 0.00 3.27
798 805 2.430694 GGGCCCAAATATGTCTCCAAAC 59.569 50.000 19.95 0.00 0.00 2.93
799 806 2.043664 TGGGCCCAAATATGTCTCCAAA 59.956 45.455 26.33 0.00 0.00 3.28
800 807 1.643286 TGGGCCCAAATATGTCTCCAA 59.357 47.619 26.33 0.00 0.00 3.53
801 808 1.303898 TGGGCCCAAATATGTCTCCA 58.696 50.000 26.33 0.00 0.00 3.86
802 809 2.430694 GTTTGGGCCCAAATATGTCTCC 59.569 50.000 44.24 28.32 45.90 3.71
803 810 2.430694 GGTTTGGGCCCAAATATGTCTC 59.569 50.000 44.24 30.96 45.90 3.36
804 811 2.466846 GGTTTGGGCCCAAATATGTCT 58.533 47.619 44.24 0.00 45.90 3.41
805 812 2.979814 GGTTTGGGCCCAAATATGTC 57.020 50.000 44.24 32.23 45.90 3.06
816 823 4.344865 TCGCCTCTGGGTTTGGGC 62.345 66.667 0.00 0.00 41.02 5.36
817 824 2.045926 CTCGCCTCTGGGTTTGGG 60.046 66.667 0.00 0.00 34.45 4.12
818 825 2.045926 CCTCGCCTCTGGGTTTGG 60.046 66.667 0.00 0.00 34.45 3.28
819 826 1.672356 CACCTCGCCTCTGGGTTTG 60.672 63.158 0.00 0.00 34.45 2.93
820 827 2.750350 CACCTCGCCTCTGGGTTT 59.250 61.111 0.00 0.00 34.45 3.27
821 828 3.322466 CCACCTCGCCTCTGGGTT 61.322 66.667 0.00 0.00 34.45 4.11
822 829 4.640690 ACCACCTCGCCTCTGGGT 62.641 66.667 0.00 0.00 34.45 4.51
823 830 1.550130 TAAACCACCTCGCCTCTGGG 61.550 60.000 0.00 0.00 0.00 4.45
824 831 0.108138 CTAAACCACCTCGCCTCTGG 60.108 60.000 0.00 0.00 0.00 3.86
825 832 0.108138 CCTAAACCACCTCGCCTCTG 60.108 60.000 0.00 0.00 0.00 3.35
826 833 0.544595 ACCTAAACCACCTCGCCTCT 60.545 55.000 0.00 0.00 0.00 3.69
827 834 0.391263 CACCTAAACCACCTCGCCTC 60.391 60.000 0.00 0.00 0.00 4.70
828 835 1.677552 CACCTAAACCACCTCGCCT 59.322 57.895 0.00 0.00 0.00 5.52
829 836 1.376812 CCACCTAAACCACCTCGCC 60.377 63.158 0.00 0.00 0.00 5.54
830 837 1.376812 CCCACCTAAACCACCTCGC 60.377 63.158 0.00 0.00 0.00 5.03
831 838 0.249398 CTCCCACCTAAACCACCTCG 59.751 60.000 0.00 0.00 0.00 4.63
832 839 1.555533 CTCTCCCACCTAAACCACCTC 59.444 57.143 0.00 0.00 0.00 3.85
833 840 1.151413 TCTCTCCCACCTAAACCACCT 59.849 52.381 0.00 0.00 0.00 4.00
834 841 1.555533 CTCTCTCCCACCTAAACCACC 59.444 57.143 0.00 0.00 0.00 4.61
835 842 2.537143 TCTCTCTCCCACCTAAACCAC 58.463 52.381 0.00 0.00 0.00 4.16
836 843 3.269592 TTCTCTCTCCCACCTAAACCA 57.730 47.619 0.00 0.00 0.00 3.67
837 844 4.565861 CCTTTTCTCTCTCCCACCTAAACC 60.566 50.000 0.00 0.00 0.00 3.27
838 845 4.286291 TCCTTTTCTCTCTCCCACCTAAAC 59.714 45.833 0.00 0.00 0.00 2.01
839 846 4.499472 TCCTTTTCTCTCTCCCACCTAAA 58.501 43.478 0.00 0.00 0.00 1.85
840 847 4.097418 CTCCTTTTCTCTCTCCCACCTAA 58.903 47.826 0.00 0.00 0.00 2.69
841 848 3.566775 CCTCCTTTTCTCTCTCCCACCTA 60.567 52.174 0.00 0.00 0.00 3.08
842 849 2.545810 CTCCTTTTCTCTCTCCCACCT 58.454 52.381 0.00 0.00 0.00 4.00
843 850 1.557371 CCTCCTTTTCTCTCTCCCACC 59.443 57.143 0.00 0.00 0.00 4.61
844 851 2.499693 CTCCTCCTTTTCTCTCTCCCAC 59.500 54.545 0.00 0.00 0.00 4.61
845 852 2.560841 CCTCCTCCTTTTCTCTCTCCCA 60.561 54.545 0.00 0.00 0.00 4.37
846 853 2.115427 CCTCCTCCTTTTCTCTCTCCC 58.885 57.143 0.00 0.00 0.00 4.30
847 854 3.031013 CTCCTCCTCCTTTTCTCTCTCC 58.969 54.545 0.00 0.00 0.00 3.71
848 855 3.708451 ACTCCTCCTCCTTTTCTCTCTC 58.292 50.000 0.00 0.00 0.00 3.20
849 856 3.837731 CAACTCCTCCTCCTTTTCTCTCT 59.162 47.826 0.00 0.00 0.00 3.10
850 857 3.055458 CCAACTCCTCCTCCTTTTCTCTC 60.055 52.174 0.00 0.00 0.00 3.20
851 858 2.909662 CCAACTCCTCCTCCTTTTCTCT 59.090 50.000 0.00 0.00 0.00 3.10
852 859 2.907042 TCCAACTCCTCCTCCTTTTCTC 59.093 50.000 0.00 0.00 0.00 2.87
853 860 2.991580 TCCAACTCCTCCTCCTTTTCT 58.008 47.619 0.00 0.00 0.00 2.52
854 861 5.455469 GGATATCCAACTCCTCCTCCTTTTC 60.455 48.000 17.34 0.00 35.64 2.29
855 862 4.413851 GGATATCCAACTCCTCCTCCTTTT 59.586 45.833 17.34 0.00 35.64 2.27
856 863 3.977326 GGATATCCAACTCCTCCTCCTTT 59.023 47.826 17.34 0.00 35.64 3.11
857 864 3.211000 AGGATATCCAACTCCTCCTCCTT 59.789 47.826 23.81 0.00 37.30 3.36
858 865 2.800788 AGGATATCCAACTCCTCCTCCT 59.199 50.000 23.81 0.00 37.30 3.69
859 866 3.268034 AGGATATCCAACTCCTCCTCC 57.732 52.381 23.81 0.00 37.30 4.30
860 867 3.970640 ACAAGGATATCCAACTCCTCCTC 59.029 47.826 23.81 0.00 41.09 3.71
861 868 4.014273 ACAAGGATATCCAACTCCTCCT 57.986 45.455 23.81 0.00 41.09 3.69
862 869 6.271159 AGAATACAAGGATATCCAACTCCTCC 59.729 42.308 23.81 6.50 41.09 4.30
863 870 7.015682 TGAGAATACAAGGATATCCAACTCCTC 59.984 40.741 23.81 17.97 41.09 3.71
864 871 6.846505 TGAGAATACAAGGATATCCAACTCCT 59.153 38.462 23.81 10.88 43.86 3.69
865 872 7.067496 TGAGAATACAAGGATATCCAACTCC 57.933 40.000 23.81 6.52 38.89 3.85
866 873 8.964476 TTTGAGAATACAAGGATATCCAACTC 57.036 34.615 23.81 17.69 38.89 3.01
867 874 9.753674 TTTTTGAGAATACAAGGATATCCAACT 57.246 29.630 23.81 10.81 38.89 3.16
895 902 6.437477 GGAGGAACAAGGATATCCAACTTTTT 59.563 38.462 23.81 8.69 38.89 1.94
896 903 5.952347 GGAGGAACAAGGATATCCAACTTTT 59.048 40.000 23.81 5.96 38.89 2.27
897 904 5.510430 GGAGGAACAAGGATATCCAACTTT 58.490 41.667 23.81 10.57 38.89 2.66
898 905 4.384208 CGGAGGAACAAGGATATCCAACTT 60.384 45.833 23.81 10.57 38.89 2.66
899 906 3.134804 CGGAGGAACAAGGATATCCAACT 59.865 47.826 23.81 11.24 38.89 3.16
900 907 3.118371 ACGGAGGAACAAGGATATCCAAC 60.118 47.826 23.81 9.30 38.89 3.77
901 908 3.112263 ACGGAGGAACAAGGATATCCAA 58.888 45.455 23.81 0.00 38.89 3.53
902 909 2.759355 ACGGAGGAACAAGGATATCCA 58.241 47.619 23.81 0.00 38.89 3.41
903 910 3.494573 GGAACGGAGGAACAAGGATATCC 60.495 52.174 14.41 14.41 0.00 2.59
904 911 3.494573 GGGAACGGAGGAACAAGGATATC 60.495 52.174 0.00 0.00 0.00 1.63
905 912 2.438392 GGGAACGGAGGAACAAGGATAT 59.562 50.000 0.00 0.00 0.00 1.63
906 913 1.835531 GGGAACGGAGGAACAAGGATA 59.164 52.381 0.00 0.00 0.00 2.59
907 914 0.618981 GGGAACGGAGGAACAAGGAT 59.381 55.000 0.00 0.00 0.00 3.24
908 915 1.486145 GGGGAACGGAGGAACAAGGA 61.486 60.000 0.00 0.00 0.00 3.36
909 916 1.002502 GGGGAACGGAGGAACAAGG 60.003 63.158 0.00 0.00 0.00 3.61
910 917 0.400594 AAGGGGAACGGAGGAACAAG 59.599 55.000 0.00 0.00 0.00 3.16
911 918 1.348696 GTAAGGGGAACGGAGGAACAA 59.651 52.381 0.00 0.00 0.00 2.83
912 919 0.978907 GTAAGGGGAACGGAGGAACA 59.021 55.000 0.00 0.00 0.00 3.18
913 920 0.251354 GGTAAGGGGAACGGAGGAAC 59.749 60.000 0.00 0.00 0.00 3.62
914 921 0.117742 AGGTAAGGGGAACGGAGGAA 59.882 55.000 0.00 0.00 0.00 3.36
915 922 0.325016 GAGGTAAGGGGAACGGAGGA 60.325 60.000 0.00 0.00 0.00 3.71
916 923 1.673808 CGAGGTAAGGGGAACGGAGG 61.674 65.000 0.00 0.00 0.00 4.30
917 924 1.814527 CGAGGTAAGGGGAACGGAG 59.185 63.158 0.00 0.00 0.00 4.63
918 925 2.353610 GCGAGGTAAGGGGAACGGA 61.354 63.158 0.00 0.00 0.00 4.69
919 926 2.186125 GCGAGGTAAGGGGAACGG 59.814 66.667 0.00 0.00 0.00 4.44
920 927 2.202703 CGCGAGGTAAGGGGAACG 60.203 66.667 0.00 0.00 0.00 3.95
921 928 2.510918 GCGCGAGGTAAGGGGAAC 60.511 66.667 12.10 0.00 0.00 3.62
922 929 3.777910 GGCGCGAGGTAAGGGGAA 61.778 66.667 12.10 0.00 0.00 3.97
956 963 0.611896 GGGGACTGGATTGTTGTGGG 60.612 60.000 0.00 0.00 0.00 4.61
964 971 1.364328 AGAGACAGAGGGGACTGGATT 59.636 52.381 0.00 0.00 44.43 3.01
966 973 0.333312 GAGAGACAGAGGGGACTGGA 59.667 60.000 0.00 0.00 44.43 3.86
967 974 0.686112 GGAGAGACAGAGGGGACTGG 60.686 65.000 0.00 0.00 44.43 4.00
970 977 1.190643 CAAGGAGAGACAGAGGGGAC 58.809 60.000 0.00 0.00 0.00 4.46
971 978 0.041833 CCAAGGAGAGACAGAGGGGA 59.958 60.000 0.00 0.00 0.00 4.81
1031 1043 2.949826 GGCTCGTAGATCCGGAGAT 58.050 57.895 11.34 2.92 31.25 2.75
1068 1081 2.203938 TCTTCCTTGAGCCGGGGT 60.204 61.111 2.18 0.00 0.00 4.95
1073 1086 3.118920 GGACTTAGACTCTTCCTTGAGCC 60.119 52.174 0.00 0.00 37.58 4.70
1078 1091 5.837829 AGATCTGGACTTAGACTCTTCCTT 58.162 41.667 0.00 0.00 0.00 3.36
1120 1133 1.065928 CCTTGCCGTAGTAGGAGCG 59.934 63.158 0.00 0.00 0.00 5.03
1127 1140 3.234630 TTCTGCGCCTTGCCGTAGT 62.235 57.895 4.18 0.00 45.60 2.73
1132 1145 4.112341 CAGCTTCTGCGCCTTGCC 62.112 66.667 4.18 0.00 45.60 4.52
1203 1237 3.935203 GACTGTTGATCACGATGTTGGAT 59.065 43.478 0.00 0.00 0.00 3.41
1278 1312 0.108615 CCTCTACCACAACCTCGCAG 60.109 60.000 0.00 0.00 0.00 5.18
1291 1328 1.537135 GCGCTTCAGGTCATCCTCTAC 60.537 57.143 0.00 0.00 43.07 2.59
1327 1364 0.324943 CGGGTGAGGAAGACAACCAT 59.675 55.000 0.00 0.00 44.47 3.55
1332 1369 1.568504 ATAAGCGGGTGAGGAAGACA 58.431 50.000 0.00 0.00 0.00 3.41
1350 1387 1.562672 CCTCCGACAGGTTGGGGAAT 61.563 60.000 7.17 0.00 36.69 3.01
1404 1441 3.195698 GCGGCAATGAGGACGTCC 61.196 66.667 27.67 27.67 42.62 4.79
1440 1477 3.532896 GAAACCCTCGATGCACTGA 57.467 52.632 0.00 0.00 0.00 3.41
1450 1487 1.521681 CGGAGGCATCGAAACCCTC 60.522 63.158 16.68 16.68 43.48 4.30
1470 1507 1.372582 CCATGTTGATGACGTCTGGG 58.627 55.000 17.92 2.92 0.00 4.45
1537 1583 0.756294 TTGCACCAGGAGAAGACGAA 59.244 50.000 0.00 0.00 0.00 3.85
1544 1590 0.615331 GGAGATGTTGCACCAGGAGA 59.385 55.000 0.00 0.00 0.00 3.71
1623 1714 2.148916 TAATAATGGCGTCAGAGCGG 57.851 50.000 0.00 0.00 38.18 5.52
1634 1731 5.877012 AGCATATGGACGAGCTTAATAATGG 59.123 40.000 4.56 0.00 32.52 3.16
1641 1738 5.531122 AGTTAAGCATATGGACGAGCTTA 57.469 39.130 4.56 2.00 44.73 3.09
1652 1749 3.994392 CGGCGGTTCATAGTTAAGCATAT 59.006 43.478 0.00 0.00 0.00 1.78
1675 1778 1.001974 CCACACATCTCTTTCACGGGA 59.998 52.381 0.00 0.00 0.00 5.14
1685 1788 0.877071 CCACACAAGCCACACATCTC 59.123 55.000 0.00 0.00 0.00 2.75
1762 1865 2.251642 GCGTCCGGTTGAGCAAGTT 61.252 57.895 0.00 0.00 0.00 2.66
1860 1963 1.731433 CGTAGCAGTAGCCGGCCTTA 61.731 60.000 26.15 7.15 43.56 2.69
1885 1988 1.189524 ATGTTGGAGACGGGGTCGAA 61.190 55.000 0.00 0.00 37.67 3.71
1929 2033 1.078347 GGAGGGTGGGAAATTGGCA 59.922 57.895 0.00 0.00 0.00 4.92
1934 2038 2.383338 AGTTTCATGGAGGGTGGGAAAT 59.617 45.455 0.00 0.00 31.06 2.17
1935 2039 1.786441 AGTTTCATGGAGGGTGGGAAA 59.214 47.619 0.00 0.00 0.00 3.13
2147 2257 4.748892 CACATCTCTCACGATACCAAAGT 58.251 43.478 0.00 0.00 0.00 2.66
2159 2269 2.674958 TGCCTCAGCACATCTCTCA 58.325 52.632 0.00 0.00 46.52 3.27
2187 2297 0.386478 GCTTGCAACGAAAGGCAGAG 60.386 55.000 0.00 0.00 41.68 3.35
2196 2306 0.944386 GAGTTTGGAGCTTGCAACGA 59.056 50.000 0.00 0.00 0.00 3.85
2198 2308 2.735823 CTTGAGTTTGGAGCTTGCAAC 58.264 47.619 0.00 0.00 0.00 4.17
2205 2315 1.979155 GGGGGCTTGAGTTTGGAGC 60.979 63.158 0.00 0.00 35.71 4.70
2206 2316 4.423231 GGGGGCTTGAGTTTGGAG 57.577 61.111 0.00 0.00 0.00 3.86
2229 2339 2.029828 GTGTCCTACAGTGAGACCAGTG 60.030 54.545 0.00 0.00 46.56 3.66
2230 2340 2.240279 GTGTCCTACAGTGAGACCAGT 58.760 52.381 0.00 0.00 0.00 4.00
2237 2347 0.896940 GTCCGGGTGTCCTACAGTGA 60.897 60.000 0.00 0.00 0.00 3.41
2238 2348 1.183030 TGTCCGGGTGTCCTACAGTG 61.183 60.000 0.00 0.00 0.00 3.66
2239 2349 1.154454 TGTCCGGGTGTCCTACAGT 59.846 57.895 0.00 0.00 0.00 3.55
2242 2352 1.590147 CAGTGTCCGGGTGTCCTAC 59.410 63.158 0.00 0.00 0.00 3.18
2243 2353 1.608336 CCAGTGTCCGGGTGTCCTA 60.608 63.158 0.00 0.00 0.00 2.94
2247 2357 0.323629 CAATACCAGTGTCCGGGTGT 59.676 55.000 0.00 0.00 39.66 4.16
2326 2436 2.615447 TGCAACAAGAAGTGAGAAGCTG 59.385 45.455 0.00 0.00 0.00 4.24
2340 2450 1.826054 CGGGTCCACCTTGCAACAA 60.826 57.895 0.00 0.00 36.97 2.83
2344 2454 2.847234 ACTCGGGTCCACCTTGCA 60.847 61.111 0.00 0.00 36.97 4.08
2353 2463 0.244178 GACAAGACAGGACTCGGGTC 59.756 60.000 6.97 6.97 41.43 4.46
2354 2464 0.178958 AGACAAGACAGGACTCGGGT 60.179 55.000 0.00 0.00 0.00 5.28
2355 2465 0.528470 GAGACAAGACAGGACTCGGG 59.472 60.000 0.00 0.00 0.00 5.14
2357 2467 1.402194 GCAGAGACAAGACAGGACTCG 60.402 57.143 0.00 0.00 33.53 4.18
2361 2471 0.319728 GCAGCAGAGACAAGACAGGA 59.680 55.000 0.00 0.00 0.00 3.86
2366 2476 2.833943 TCAATAGGCAGCAGAGACAAGA 59.166 45.455 0.00 0.00 0.00 3.02
2381 2491 4.402155 AGGAGAGCTTGTGAGAGTCAATAG 59.598 45.833 0.00 0.00 0.00 1.73
2383 2493 3.172339 AGGAGAGCTTGTGAGAGTCAAT 58.828 45.455 0.00 0.00 0.00 2.57
2384 2494 2.603021 AGGAGAGCTTGTGAGAGTCAA 58.397 47.619 0.00 0.00 0.00 3.18
2405 2515 3.056607 GGCAAGCAGGCTTAAATCTTGAA 60.057 43.478 6.16 0.00 37.03 2.69
2413 2523 0.178964 AACCTGGCAAGCAGGCTTAA 60.179 50.000 6.16 0.00 43.42 1.85
2415 2525 1.458209 AAACCTGGCAAGCAGGCTT 60.458 52.632 7.35 0.00 43.42 4.35
2417 2527 0.609131 TAGAAACCTGGCAAGCAGGC 60.609 55.000 7.35 0.00 43.42 4.85
2418 2528 2.019984 GATAGAAACCTGGCAAGCAGG 58.980 52.381 5.99 5.99 45.06 4.85
2420 2530 3.084039 CAAGATAGAAACCTGGCAAGCA 58.916 45.455 0.00 0.00 0.00 3.91
2433 2543 5.406163 TCATAGAGGGGATTGCAAGATAGA 58.594 41.667 4.94 0.00 0.00 1.98
2441 2551 4.284490 TGTCATACTCATAGAGGGGATTGC 59.716 45.833 0.00 0.00 33.35 3.56
2445 2555 4.483950 CCTTGTCATACTCATAGAGGGGA 58.516 47.826 0.00 0.00 33.35 4.81
2446 2556 3.007398 GCCTTGTCATACTCATAGAGGGG 59.993 52.174 0.00 0.00 33.35 4.79
2450 2560 5.163405 GGAAGTGCCTTGTCATACTCATAGA 60.163 44.000 0.00 0.00 0.00 1.98
2464 2574 1.460699 GGGGAAGTGGAAGTGCCTT 59.539 57.895 0.00 0.00 37.63 4.35
2465 2575 2.539081 GGGGGAAGTGGAAGTGCCT 61.539 63.158 0.00 0.00 37.63 4.75
2466 2576 2.035783 GGGGGAAGTGGAAGTGCC 59.964 66.667 0.00 0.00 37.10 5.01
2468 2578 0.036875 GACTGGGGGAAGTGGAAGTG 59.963 60.000 0.00 0.00 0.00 3.16
2470 2580 1.685820 GGACTGGGGGAAGTGGAAG 59.314 63.158 0.00 0.00 0.00 3.46
2472 2582 2.204090 GGGACTGGGGGAAGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
2473 2583 3.339093 GGGGACTGGGGGAAGTGG 61.339 72.222 0.00 0.00 0.00 4.00
2505 2615 2.487428 CTCGCTAGCTCTGCACGT 59.513 61.111 13.93 0.00 0.00 4.49
2535 2645 2.092538 AGCATTGACCTCCTTGGAGATG 60.093 50.000 17.55 13.26 39.71 2.90
2586 2696 1.745489 GCAGAGCAAACCTACCCCG 60.745 63.158 0.00 0.00 0.00 5.73
2605 2717 7.867403 AGAAATGTTAGCAATAACCAACAACAG 59.133 33.333 0.00 0.00 34.79 3.16
2639 2754 3.313249 TCAACATTTGATGAGCATAGGCG 59.687 43.478 0.00 0.00 39.00 5.52
2651 2767 6.252233 TGGGATCCTGTAATTCAACATTTGA 58.748 36.000 12.58 0.00 38.04 2.69
2681 2799 7.218228 TCACAACACAAATCATATGAAGCTT 57.782 32.000 9.99 0.00 0.00 3.74
2691 2809 4.082841 CCCGATCATTCACAACACAAATCA 60.083 41.667 0.00 0.00 0.00 2.57
2700 2818 0.742990 GCGGACCCGATCATTCACAA 60.743 55.000 13.24 0.00 42.83 3.33
2744 2862 2.821366 GTGAGAGTGGCCATGGCG 60.821 66.667 29.90 0.00 43.06 5.69
2780 2904 1.152567 CACCACCAGGGCTTTTGGA 60.153 57.895 9.59 0.00 42.05 3.53
2792 2916 2.861147 AAAGTAGGAGCTTCACCACC 57.139 50.000 0.00 0.00 0.00 4.61
2832 2958 0.798776 GGACATGCTTCGGTTGTCAG 59.201 55.000 0.00 0.00 41.17 3.51
2833 2959 0.396435 AGGACATGCTTCGGTTGTCA 59.604 50.000 0.00 0.00 41.17 3.58
2836 2962 1.466167 CAGAAGGACATGCTTCGGTTG 59.534 52.381 7.40 0.00 34.99 3.77
2837 2963 1.072331 ACAGAAGGACATGCTTCGGTT 59.928 47.619 11.95 0.00 35.18 4.44
2967 3680 2.029918 GGTCAGTTGTGGAAAAGATGCC 60.030 50.000 0.00 0.00 0.00 4.40
2976 3709 3.576078 AATCAAGTGGTCAGTTGTGGA 57.424 42.857 15.53 1.00 41.32 4.02
3054 3795 8.458843 TCTTTGACACTTCTTTTCTCGATTTTT 58.541 29.630 0.00 0.00 0.00 1.94
3055 3796 7.985476 TCTTTGACACTTCTTTTCTCGATTTT 58.015 30.769 0.00 0.00 0.00 1.82
3057 3798 7.736447 ATCTTTGACACTTCTTTTCTCGATT 57.264 32.000 0.00 0.00 0.00 3.34
3058 3799 8.833231 TTATCTTTGACACTTCTTTTCTCGAT 57.167 30.769 0.00 0.00 0.00 3.59
3059 3800 8.657074 TTTATCTTTGACACTTCTTTTCTCGA 57.343 30.769 0.00 0.00 0.00 4.04
3060 3801 9.716507 TTTTTATCTTTGACACTTCTTTTCTCG 57.283 29.630 0.00 0.00 0.00 4.04
3092 3836 3.823304 AGGCAAAGACATTCAACTCTTCC 59.177 43.478 0.00 0.00 0.00 3.46
3096 3840 5.241662 AGTAGAGGCAAAGACATTCAACTC 58.758 41.667 0.00 0.00 0.00 3.01
3104 3848 7.187824 AGATATTCAAGTAGAGGCAAAGACA 57.812 36.000 0.00 0.00 0.00 3.41
3105 3849 6.704050 GGAGATATTCAAGTAGAGGCAAAGAC 59.296 42.308 0.00 0.00 0.00 3.01
3106 3850 6.384015 TGGAGATATTCAAGTAGAGGCAAAGA 59.616 38.462 0.00 0.00 0.00 2.52
3107 3851 6.586344 TGGAGATATTCAAGTAGAGGCAAAG 58.414 40.000 0.00 0.00 0.00 2.77
3108 3852 6.560003 TGGAGATATTCAAGTAGAGGCAAA 57.440 37.500 0.00 0.00 0.00 3.68
3109 3853 6.100279 ACATGGAGATATTCAAGTAGAGGCAA 59.900 38.462 0.00 0.00 0.00 4.52
3115 3859 9.650539 CCTATCAACATGGAGATATTCAAGTAG 57.349 37.037 9.06 0.00 0.00 2.57
3147 3899 6.258507 GCTGTTTGATGGAAATGTTTGACTTT 59.741 34.615 0.00 0.00 0.00 2.66
3193 3947 1.749334 GAGAAGGGATCATCCGGCGT 61.749 60.000 6.01 0.00 37.43 5.68
3194 3948 1.005630 GAGAAGGGATCATCCGGCG 60.006 63.158 0.00 0.00 37.43 6.46
3197 3951 1.067283 CGATGGAGAAGGGATCATCCG 60.067 57.143 0.00 0.00 37.43 4.18
3211 3965 1.554617 TGAGGAAATGAGCACGATGGA 59.445 47.619 0.00 0.00 0.00 3.41
3244 4001 9.878599 CCGACATAGATGATTTTAAACCATTAC 57.121 33.333 0.00 0.00 0.00 1.89
3261 4045 3.572682 GGTGTATGGATGACCGACATAGA 59.427 47.826 0.00 0.00 39.56 1.98
3279 4065 5.772672 TGTGTAATGCATAAAGAAAGGGTGT 59.227 36.000 0.00 0.00 0.00 4.16
3368 4154 9.753669 GCATGCAGGTAAAAACAATATTAAAAC 57.246 29.630 14.21 0.00 0.00 2.43
3392 4178 5.149973 TGAAGGTTACCGTATAAACTGCA 57.850 39.130 0.00 0.00 27.69 4.41
3419 4208 9.869844 GCTGTGAACACATTAGATGATTAATAC 57.130 33.333 8.09 0.00 41.01 1.89
3427 4216 2.416202 TGCGCTGTGAACACATTAGATG 59.584 45.455 9.73 0.00 41.01 2.90
3432 4221 2.798976 ATTTGCGCTGTGAACACATT 57.201 40.000 9.73 0.00 41.01 2.71
3440 4229 2.987413 TACAAGGAATTTGCGCTGTG 57.013 45.000 9.73 0.00 40.59 3.66
3446 4235 8.986477 ATTCACAGTAAATACAAGGAATTTGC 57.014 30.769 0.00 0.00 40.59 3.68
3454 4243 6.039717 CCCCATGGATTCACAGTAAATACAAG 59.960 42.308 15.22 0.00 30.93 3.16
3455 4244 5.890985 CCCCATGGATTCACAGTAAATACAA 59.109 40.000 15.22 0.00 30.93 2.41
3459 4248 4.230502 AGTCCCCATGGATTCACAGTAAAT 59.769 41.667 15.22 0.00 44.28 1.40
3483 4272 1.348250 CGACCGGATGCACAATTCG 59.652 57.895 9.46 0.00 36.99 3.34
3497 4286 1.134788 CCAGTGAAGTGTATCCCGACC 60.135 57.143 0.00 0.00 0.00 4.79
3513 4302 3.374402 CTCCGAGTCACGCCCAGT 61.374 66.667 0.00 0.00 41.07 4.00
3514 4303 2.436087 AAACTCCGAGTCACGCCCAG 62.436 60.000 0.35 0.00 41.07 4.45
3539 4328 1.273327 GGGTCTTTTTCACAGGCCATG 59.727 52.381 5.01 2.37 37.83 3.66
3564 4353 1.202114 CATGGTTGCATACACACACCC 59.798 52.381 0.00 0.00 0.00 4.61
3567 4356 3.415457 TCTCATGGTTGCATACACACA 57.585 42.857 0.00 0.00 0.00 3.72
3582 4371 4.202398 ACGCCTATGGTTGATGATTCTCAT 60.202 41.667 0.00 0.00 40.34 2.90
3623 4412 6.456988 GGCTATCTTCTTTCACGTTAACATGG 60.457 42.308 6.39 0.00 0.00 3.66
3628 4417 6.282199 AGAGGCTATCTTCTTTCACGTTAA 57.718 37.500 0.00 0.00 32.99 2.01
3659 4448 2.715749 TACTCTTGTGCCCATCCATG 57.284 50.000 0.00 0.00 0.00 3.66
3660 4449 2.578021 ACTTACTCTTGTGCCCATCCAT 59.422 45.455 0.00 0.00 0.00 3.41
3686 4475 0.530744 TCAAGGAACCCGTCTCGATG 59.469 55.000 0.00 0.00 0.00 3.84
3692 4481 0.036388 TCATGCTCAAGGAACCCGTC 60.036 55.000 0.00 0.00 0.00 4.79
3694 4483 1.470098 CTTTCATGCTCAAGGAACCCG 59.530 52.381 0.00 0.00 0.00 5.28
3707 4496 9.864034 GGTATCAATAACACGTATTCTTTCATG 57.136 33.333 0.00 0.00 29.38 3.07
3711 4500 7.769044 AGCTGGTATCAATAACACGTATTCTTT 59.231 33.333 0.00 0.00 29.38 2.52
3719 4508 5.794687 TCAAAGCTGGTATCAATAACACG 57.205 39.130 0.00 0.00 0.00 4.49
3720 4509 9.056005 TCATATCAAAGCTGGTATCAATAACAC 57.944 33.333 0.00 0.00 25.24 3.32
4077 6480 2.439507 TCTGCCTGGAACTTCTCTTTGT 59.560 45.455 0.00 0.00 0.00 2.83
4124 6527 6.127403 CGACTTCTTTCAAGGAAAGTAAACG 58.873 40.000 15.91 13.70 46.22 3.60
4476 10069 4.097892 AGAAATCGCAACACAGAGGTTTTT 59.902 37.500 0.00 0.00 0.00 1.94
4506 11713 2.223479 ACTCACGCGCAAAACAATTTCT 60.223 40.909 5.73 0.00 0.00 2.52
4533 11740 4.819630 AGCACGAGAAAACCAATCTTAACA 59.180 37.500 0.00 0.00 0.00 2.41
4536 11743 3.751175 CCAGCACGAGAAAACCAATCTTA 59.249 43.478 0.00 0.00 0.00 2.10
4605 11812 2.808906 TCAGCACTAGTAGCCTCTCA 57.191 50.000 11.98 0.00 0.00 3.27
4697 11904 6.127730 ACAACACCTTATAAATAGCCACAAGC 60.128 38.462 0.00 0.00 44.25 4.01
4701 11908 5.449999 GCCACAACACCTTATAAATAGCCAC 60.450 44.000 0.00 0.00 0.00 5.01
4702 11909 4.642885 GCCACAACACCTTATAAATAGCCA 59.357 41.667 0.00 0.00 0.00 4.75
4703 11910 4.642885 TGCCACAACACCTTATAAATAGCC 59.357 41.667 0.00 0.00 0.00 3.93
4709 11916 4.667573 TCCAATGCCACAACACCTTATAA 58.332 39.130 0.00 0.00 0.00 0.98
4711 11918 3.168035 TCCAATGCCACAACACCTTAT 57.832 42.857 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.