Multiple sequence alignment - TraesCS6B01G166300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G166300 chr6B 100.000 2276 0 0 1 2276 173438468 173436193 0.000000e+00 4204.0
1 TraesCS6B01G166300 chr6B 93.033 732 43 6 1547 2276 493673597 493672872 0.000000e+00 1062.0
2 TraesCS6B01G166300 chr7B 95.939 1305 53 0 1 1305 706500288 706501592 0.000000e+00 2117.0
3 TraesCS6B01G166300 chr7B 92.789 735 47 4 1542 2274 37054080 37054810 0.000000e+00 1059.0
4 TraesCS6B01G166300 chr7B 98.024 253 5 0 1305 1557 637063393 637063141 7.460000e-120 440.0
5 TraesCS6B01G166300 chr7B 96.053 76 3 0 1306 1381 558745528 558745603 8.540000e-25 124.0
6 TraesCS6B01G166300 chr1A 93.788 1304 81 0 1 1304 65652204 65650901 0.000000e+00 1960.0
7 TraesCS6B01G166300 chr7A 93.021 1304 91 0 1 1304 79128437 79127134 0.000000e+00 1905.0
8 TraesCS6B01G166300 chr4D 92.331 1304 100 0 1 1304 298273073 298274376 0.000000e+00 1855.0
9 TraesCS6B01G166300 chr7D 92.178 1304 102 0 1 1304 544560454 544559151 0.000000e+00 1844.0
10 TraesCS6B01G166300 chr7D 91.641 1304 104 1 1 1304 599239745 599238447 0.000000e+00 1799.0
11 TraesCS6B01G166300 chr3D 91.832 1310 106 1 1 1309 31890960 31889651 0.000000e+00 1825.0
12 TraesCS6B01G166300 chr4B 91.564 1221 101 1 1 1221 605895610 605894392 0.000000e+00 1683.0
13 TraesCS6B01G166300 chr4B 93.535 727 43 3 1552 2276 170324726 170325450 0.000000e+00 1079.0
14 TraesCS6B01G166300 chr2B 91.139 1185 104 1 1 1185 683266695 683267878 0.000000e+00 1605.0
15 TraesCS6B01G166300 chr2B 93.741 719 42 2 1559 2276 286494572 286495288 0.000000e+00 1075.0
16 TraesCS6B01G166300 chr2B 87.156 109 11 3 1446 1554 618571184 618571079 1.100000e-23 121.0
17 TraesCS6B01G166300 chr3B 94.561 717 35 4 1560 2274 78140327 78139613 0.000000e+00 1105.0
18 TraesCS6B01G166300 chr3B 93.169 732 44 5 1547 2276 331364692 331363965 0.000000e+00 1070.0
19 TraesCS6B01G166300 chr3B 76.333 300 64 5 1008 1304 672414727 672414432 1.090000e-33 154.0
20 TraesCS6B01G166300 chr3B 84.404 109 14 3 1446 1554 379727398 379727293 1.110000e-18 104.0
21 TraesCS6B01G166300 chr5B 94.310 703 39 1 1574 2276 91822892 91823593 0.000000e+00 1075.0
22 TraesCS6B01G166300 chr5B 93.042 733 42 4 1547 2276 164113291 164114017 0.000000e+00 1062.0
23 TraesCS6B01G166300 chr5B 92.896 732 51 1 1545 2276 258709729 258710459 0.000000e+00 1062.0
24 TraesCS6B01G166300 chr5B 83.929 112 15 3 1443 1554 245875083 245875191 1.110000e-18 104.0
25 TraesCS6B01G166300 chr2A 95.763 236 10 0 1305 1540 154826088 154826323 4.590000e-102 381.0
26 TraesCS6B01G166300 chr2A 83.929 112 15 3 1443 1554 709124697 709124805 1.110000e-18 104.0
27 TraesCS6B01G166300 chr4A 89.796 98 9 1 1458 1555 89892244 89892340 8.540000e-25 124.0
28 TraesCS6B01G166300 chr1B 87.156 109 11 3 1446 1554 12388562 12388457 1.100000e-23 121.0
29 TraesCS6B01G166300 chr3A 83.838 99 13 3 1443 1541 1510628 1510723 8.660000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G166300 chr6B 173436193 173438468 2275 True 4204 4204 100.000 1 2276 1 chr6B.!!$R1 2275
1 TraesCS6B01G166300 chr6B 493672872 493673597 725 True 1062 1062 93.033 1547 2276 1 chr6B.!!$R2 729
2 TraesCS6B01G166300 chr7B 706500288 706501592 1304 False 2117 2117 95.939 1 1305 1 chr7B.!!$F3 1304
3 TraesCS6B01G166300 chr7B 37054080 37054810 730 False 1059 1059 92.789 1542 2274 1 chr7B.!!$F1 732
4 TraesCS6B01G166300 chr1A 65650901 65652204 1303 True 1960 1960 93.788 1 1304 1 chr1A.!!$R1 1303
5 TraesCS6B01G166300 chr7A 79127134 79128437 1303 True 1905 1905 93.021 1 1304 1 chr7A.!!$R1 1303
6 TraesCS6B01G166300 chr4D 298273073 298274376 1303 False 1855 1855 92.331 1 1304 1 chr4D.!!$F1 1303
7 TraesCS6B01G166300 chr7D 544559151 544560454 1303 True 1844 1844 92.178 1 1304 1 chr7D.!!$R1 1303
8 TraesCS6B01G166300 chr7D 599238447 599239745 1298 True 1799 1799 91.641 1 1304 1 chr7D.!!$R2 1303
9 TraesCS6B01G166300 chr3D 31889651 31890960 1309 True 1825 1825 91.832 1 1309 1 chr3D.!!$R1 1308
10 TraesCS6B01G166300 chr4B 605894392 605895610 1218 True 1683 1683 91.564 1 1221 1 chr4B.!!$R1 1220
11 TraesCS6B01G166300 chr4B 170324726 170325450 724 False 1079 1079 93.535 1552 2276 1 chr4B.!!$F1 724
12 TraesCS6B01G166300 chr2B 683266695 683267878 1183 False 1605 1605 91.139 1 1185 1 chr2B.!!$F2 1184
13 TraesCS6B01G166300 chr2B 286494572 286495288 716 False 1075 1075 93.741 1559 2276 1 chr2B.!!$F1 717
14 TraesCS6B01G166300 chr3B 78139613 78140327 714 True 1105 1105 94.561 1560 2274 1 chr3B.!!$R1 714
15 TraesCS6B01G166300 chr3B 331363965 331364692 727 True 1070 1070 93.169 1547 2276 1 chr3B.!!$R2 729
16 TraesCS6B01G166300 chr5B 91822892 91823593 701 False 1075 1075 94.310 1574 2276 1 chr5B.!!$F1 702
17 TraesCS6B01G166300 chr5B 164113291 164114017 726 False 1062 1062 93.042 1547 2276 1 chr5B.!!$F2 729
18 TraesCS6B01G166300 chr5B 258709729 258710459 730 False 1062 1062 92.896 1545 2276 1 chr5B.!!$F4 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 249 0.102481 AATCGGCGTATCGTGCTCTT 59.898 50.0 6.85 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 1490 0.251916 TAGCGGGTCCATTGAGTTGG 59.748 55.0 0.0 0.0 38.18 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 85 3.056821 CGTGAGTGAACTGATAGACCCAA 60.057 47.826 0.00 0.00 0.00 4.12
86 92 4.962362 TGAACTGATAGACCCAATGAGCTA 59.038 41.667 0.00 0.00 0.00 3.32
97 103 0.107456 AATGAGCTAGACATGGCGGG 59.893 55.000 0.00 0.00 38.11 6.13
189 195 1.771255 GGGGGTGAAGACATCTATGCT 59.229 52.381 0.00 0.00 0.00 3.79
243 249 0.102481 AATCGGCGTATCGTGCTCTT 59.898 50.000 6.85 0.00 0.00 2.85
348 354 6.447162 CATTTGAAAACTCAAAGTAGTCCCC 58.553 40.000 6.47 0.00 42.03 4.81
408 414 0.892358 TACCGGACGAGTGCACTCTT 60.892 55.000 36.78 31.16 40.75 2.85
618 624 4.273480 CGTTTTTCTGAGAAGGAAAGAGCA 59.727 41.667 0.00 0.00 34.73 4.26
627 633 5.249393 TGAGAAGGAAAGAGCAATCCTAGTT 59.751 40.000 0.00 0.00 45.33 2.24
656 662 2.170166 GTGGGCAATTTGGACATCTCA 58.830 47.619 0.00 0.00 0.00 3.27
664 670 5.713025 CAATTTGGACATCTCAAAATCGGT 58.287 37.500 0.00 0.00 37.60 4.69
735 741 1.730064 CGCGAGGATCTAGCTCTACTC 59.270 57.143 0.00 0.00 30.11 2.59
839 845 0.108615 GCTGCTACACACCTCGATGT 60.109 55.000 0.00 0.00 0.00 3.06
979 986 6.877322 GGAAGGAGTATTACTTGCAACACTAA 59.123 38.462 0.00 0.00 35.45 2.24
1333 1340 9.908152 GACATATACTTGTGTATACTACATGCA 57.092 33.333 4.17 0.00 42.38 3.96
1336 1343 5.991328 ACTTGTGTATACTACATGCATGC 57.009 39.130 26.53 11.82 41.34 4.06
1337 1344 5.427378 ACTTGTGTATACTACATGCATGCA 58.573 37.500 26.53 25.04 41.34 3.96
1338 1345 5.525012 ACTTGTGTATACTACATGCATGCAG 59.475 40.000 26.69 24.55 41.34 4.41
1339 1346 4.379652 TGTGTATACTACATGCATGCAGG 58.620 43.478 29.33 29.33 41.34 4.85
1340 1347 4.100808 TGTGTATACTACATGCATGCAGGA 59.899 41.667 36.44 21.31 41.34 3.86
1341 1348 5.221702 TGTGTATACTACATGCATGCAGGAT 60.222 40.000 36.44 24.87 41.34 3.24
1349 1356 4.632538 CATGCATGCAGGATGTATATGG 57.367 45.455 27.49 0.00 40.31 2.74
1350 1357 4.266714 CATGCATGCAGGATGTATATGGA 58.733 43.478 27.49 0.00 40.31 3.41
1351 1358 4.579647 TGCATGCAGGATGTATATGGAT 57.420 40.909 18.46 0.00 40.31 3.41
1352 1359 5.697082 TGCATGCAGGATGTATATGGATA 57.303 39.130 18.46 0.00 40.31 2.59
1353 1360 6.064735 TGCATGCAGGATGTATATGGATAA 57.935 37.500 18.46 0.00 40.31 1.75
1354 1361 6.117488 TGCATGCAGGATGTATATGGATAAG 58.883 40.000 18.46 0.00 40.31 1.73
1355 1362 5.008415 GCATGCAGGATGTATATGGATAAGC 59.992 44.000 14.21 0.00 40.31 3.09
1356 1363 5.760484 TGCAGGATGTATATGGATAAGCA 57.240 39.130 0.00 0.00 39.31 3.91
1357 1364 6.317663 TGCAGGATGTATATGGATAAGCAT 57.682 37.500 0.00 0.00 39.31 3.79
1358 1365 6.117488 TGCAGGATGTATATGGATAAGCATG 58.883 40.000 0.00 0.00 39.31 4.06
1359 1366 5.530171 GCAGGATGTATATGGATAAGCATGG 59.470 44.000 0.00 0.00 39.31 3.66
1360 1367 6.060136 CAGGATGTATATGGATAAGCATGGG 58.940 44.000 0.00 0.00 0.00 4.00
1361 1368 5.133322 AGGATGTATATGGATAAGCATGGGG 59.867 44.000 0.00 0.00 0.00 4.96
1362 1369 4.235079 TGTATATGGATAAGCATGGGGC 57.765 45.455 0.00 0.00 45.30 5.80
1371 1378 2.902343 GCATGGGGCTAGCCGTTC 60.902 66.667 27.24 18.66 40.25 3.95
1372 1379 2.203209 CATGGGGCTAGCCGTTCC 60.203 66.667 27.24 22.23 36.85 3.62
1373 1380 3.489513 ATGGGGCTAGCCGTTCCC 61.490 66.667 27.24 21.87 39.81 3.97
1375 1382 4.484872 GGGGCTAGCCGTTCCCAC 62.485 72.222 27.24 11.38 41.85 4.61
1376 1383 3.712907 GGGCTAGCCGTTCCCACA 61.713 66.667 27.24 0.00 39.82 4.17
1377 1384 2.349755 GGCTAGCCGTTCCCACAA 59.650 61.111 20.16 0.00 0.00 3.33
1378 1385 1.077716 GGCTAGCCGTTCCCACAAT 60.078 57.895 20.16 0.00 0.00 2.71
1379 1386 0.679960 GGCTAGCCGTTCCCACAATT 60.680 55.000 20.16 0.00 0.00 2.32
1380 1387 1.407712 GGCTAGCCGTTCCCACAATTA 60.408 52.381 20.16 0.00 0.00 1.40
1381 1388 2.572290 GCTAGCCGTTCCCACAATTAT 58.428 47.619 2.29 0.00 0.00 1.28
1382 1389 3.495453 GGCTAGCCGTTCCCACAATTATA 60.495 47.826 20.16 0.00 0.00 0.98
1383 1390 3.746492 GCTAGCCGTTCCCACAATTATAG 59.254 47.826 2.29 0.00 0.00 1.31
1384 1391 3.208747 AGCCGTTCCCACAATTATAGG 57.791 47.619 0.00 0.00 0.00 2.57
1385 1392 2.775384 AGCCGTTCCCACAATTATAGGA 59.225 45.455 0.00 0.00 0.00 2.94
1386 1393 3.394606 AGCCGTTCCCACAATTATAGGAT 59.605 43.478 0.00 0.00 0.00 3.24
1387 1394 3.751698 GCCGTTCCCACAATTATAGGATC 59.248 47.826 0.00 0.00 0.00 3.36
1388 1395 4.324267 CCGTTCCCACAATTATAGGATCC 58.676 47.826 2.48 2.48 0.00 3.36
1389 1396 4.202419 CCGTTCCCACAATTATAGGATCCA 60.202 45.833 15.82 0.00 0.00 3.41
1390 1397 4.997395 CGTTCCCACAATTATAGGATCCAG 59.003 45.833 15.82 0.00 0.00 3.86
1391 1398 4.640771 TCCCACAATTATAGGATCCAGC 57.359 45.455 15.82 0.00 0.00 4.85
1392 1399 3.980022 TCCCACAATTATAGGATCCAGCA 59.020 43.478 15.82 0.00 0.00 4.41
1393 1400 4.074970 CCCACAATTATAGGATCCAGCAC 58.925 47.826 15.82 0.00 0.00 4.40
1394 1401 4.446167 CCCACAATTATAGGATCCAGCACA 60.446 45.833 15.82 0.00 0.00 4.57
1395 1402 4.516698 CCACAATTATAGGATCCAGCACAC 59.483 45.833 15.82 0.00 0.00 3.82
1396 1403 5.125356 CACAATTATAGGATCCAGCACACA 58.875 41.667 15.82 0.00 0.00 3.72
1397 1404 5.766670 CACAATTATAGGATCCAGCACACAT 59.233 40.000 15.82 0.00 0.00 3.21
1398 1405 5.766670 ACAATTATAGGATCCAGCACACATG 59.233 40.000 15.82 5.77 0.00 3.21
1414 1421 4.055654 TGCATGCGCACACTTACA 57.944 50.000 14.90 1.44 45.36 2.41
1415 1422 2.325218 TGCATGCGCACACTTACAA 58.675 47.368 14.90 0.00 45.36 2.41
1416 1423 0.665298 TGCATGCGCACACTTACAAA 59.335 45.000 14.90 0.00 45.36 2.83
1417 1424 1.066152 TGCATGCGCACACTTACAAAA 59.934 42.857 14.90 0.00 45.36 2.44
1418 1425 1.715519 GCATGCGCACACTTACAAAAG 59.284 47.619 14.90 0.00 38.36 2.27
1419 1426 2.858260 GCATGCGCACACTTACAAAAGT 60.858 45.455 14.90 0.00 41.68 2.66
1420 1427 3.371168 CATGCGCACACTTACAAAAGTT 58.629 40.909 14.90 0.00 43.60 2.66
1421 1428 3.495670 TGCGCACACTTACAAAAGTTT 57.504 38.095 5.66 0.00 43.60 2.66
1422 1429 3.175152 TGCGCACACTTACAAAAGTTTG 58.825 40.909 5.66 2.22 43.60 2.93
1433 1440 2.976729 CAAAAGTTTGTTGCATGCAGC 58.023 42.857 25.78 25.78 37.28 5.25
1434 1441 2.597971 CAAAAGTTTGTTGCATGCAGCG 60.598 45.455 26.43 8.47 38.59 5.18
1435 1442 4.821756 CAAAAGTTTGTTGCATGCAGCGA 61.822 43.478 26.43 23.14 38.59 4.93
1436 1443 6.073787 CAAAAGTTTGTTGCATGCAGCGAT 62.074 41.667 26.43 10.62 39.30 4.58
1437 1444 7.470132 CAAAAGTTTGTTGCATGCAGCGATT 62.470 40.000 26.43 15.57 39.30 3.34
1438 1445 8.837029 CAAAAGTTTGTTGCATGCAGCGATTT 62.837 38.462 26.43 19.80 39.30 2.17
1439 1446 9.554384 CAAAAGTTTGTTGCATGCAGCGATTTA 62.554 37.037 26.43 9.93 39.30 1.40
1446 1453 3.762779 GCATGCAGCGATTTAGTTTTCT 58.237 40.909 14.21 0.00 0.00 2.52
1447 1454 4.168760 GCATGCAGCGATTTAGTTTTCTT 58.831 39.130 14.21 0.00 0.00 2.52
1448 1455 4.622740 GCATGCAGCGATTTAGTTTTCTTT 59.377 37.500 14.21 0.00 0.00 2.52
1449 1456 5.119125 GCATGCAGCGATTTAGTTTTCTTTT 59.881 36.000 14.21 0.00 0.00 2.27
1450 1457 6.668325 GCATGCAGCGATTTAGTTTTCTTTTC 60.668 38.462 14.21 0.00 0.00 2.29
1451 1458 5.219633 TGCAGCGATTTAGTTTTCTTTTCC 58.780 37.500 0.00 0.00 0.00 3.13
1452 1459 4.621460 GCAGCGATTTAGTTTTCTTTTCCC 59.379 41.667 0.00 0.00 0.00 3.97
1453 1460 5.768317 CAGCGATTTAGTTTTCTTTTCCCA 58.232 37.500 0.00 0.00 0.00 4.37
1454 1461 5.629435 CAGCGATTTAGTTTTCTTTTCCCAC 59.371 40.000 0.00 0.00 0.00 4.61
1455 1462 4.921515 GCGATTTAGTTTTCTTTTCCCACC 59.078 41.667 0.00 0.00 0.00 4.61
1456 1463 5.151389 CGATTTAGTTTTCTTTTCCCACCG 58.849 41.667 0.00 0.00 0.00 4.94
1457 1464 4.922471 TTTAGTTTTCTTTTCCCACCGG 57.078 40.909 0.00 0.00 0.00 5.28
1458 1465 2.447408 AGTTTTCTTTTCCCACCGGT 57.553 45.000 0.00 0.00 0.00 5.28
1459 1466 2.742348 AGTTTTCTTTTCCCACCGGTT 58.258 42.857 2.97 0.00 0.00 4.44
1460 1467 2.429250 AGTTTTCTTTTCCCACCGGTTG 59.571 45.455 2.97 0.00 0.00 3.77
1461 1468 1.404843 TTTCTTTTCCCACCGGTTGG 58.595 50.000 18.74 18.74 46.47 3.77
1462 1469 1.110518 TTCTTTTCCCACCGGTTGGC 61.111 55.000 19.95 0.00 45.37 4.52
1463 1470 1.530655 CTTTTCCCACCGGTTGGCT 60.531 57.895 19.95 0.00 45.37 4.75
1464 1471 1.075896 TTTTCCCACCGGTTGGCTT 60.076 52.632 19.95 0.00 45.37 4.35
1465 1472 1.395826 TTTTCCCACCGGTTGGCTTG 61.396 55.000 19.95 0.00 45.37 4.01
1466 1473 2.285889 TTTCCCACCGGTTGGCTTGA 62.286 55.000 19.95 7.89 45.37 3.02
1467 1474 2.035626 CCCACCGGTTGGCTTGAT 59.964 61.111 12.49 0.00 45.37 2.57
1468 1475 1.202099 TCCCACCGGTTGGCTTGATA 61.202 55.000 19.95 0.00 45.37 2.15
1469 1476 0.748005 CCCACCGGTTGGCTTGATAG 60.748 60.000 12.49 0.00 45.37 2.08
1471 1478 0.392998 CACCGGTTGGCTTGATAGCT 60.393 55.000 2.97 0.00 46.90 3.32
1472 1479 1.134521 CACCGGTTGGCTTGATAGCTA 60.135 52.381 2.97 0.00 46.90 3.32
1473 1480 1.768870 ACCGGTTGGCTTGATAGCTAT 59.231 47.619 5.76 5.76 46.90 2.97
1474 1481 2.224305 ACCGGTTGGCTTGATAGCTATC 60.224 50.000 24.27 24.27 46.90 2.08
1475 1482 2.061773 CGGTTGGCTTGATAGCTATCG 58.938 52.381 25.00 14.86 46.90 2.92
1476 1483 2.545952 CGGTTGGCTTGATAGCTATCGT 60.546 50.000 25.00 0.00 46.90 3.73
1477 1484 2.802816 GGTTGGCTTGATAGCTATCGTG 59.197 50.000 25.00 20.49 46.90 4.35
1478 1485 3.458189 GTTGGCTTGATAGCTATCGTGT 58.542 45.455 25.00 0.00 46.90 4.49
1479 1486 4.500887 GGTTGGCTTGATAGCTATCGTGTA 60.501 45.833 25.00 8.14 46.90 2.90
1480 1487 5.230942 GTTGGCTTGATAGCTATCGTGTAT 58.769 41.667 25.00 0.00 46.90 2.29
1481 1488 6.387465 GTTGGCTTGATAGCTATCGTGTATA 58.613 40.000 25.00 7.11 46.90 1.47
1482 1489 6.775594 TGGCTTGATAGCTATCGTGTATAT 57.224 37.500 25.00 0.00 46.90 0.86
1483 1490 6.796426 TGGCTTGATAGCTATCGTGTATATC 58.204 40.000 25.00 11.60 46.90 1.63
1484 1491 6.183360 TGGCTTGATAGCTATCGTGTATATCC 60.183 42.308 25.00 17.10 46.90 2.59
1485 1492 6.183360 GGCTTGATAGCTATCGTGTATATCCA 60.183 42.308 25.00 5.00 46.90 3.41
1486 1493 7.258441 GCTTGATAGCTATCGTGTATATCCAA 58.742 38.462 25.00 11.67 44.27 3.53
1487 1494 7.221067 GCTTGATAGCTATCGTGTATATCCAAC 59.779 40.741 25.00 1.45 44.27 3.77
1488 1495 7.939784 TGATAGCTATCGTGTATATCCAACT 57.060 36.000 25.00 0.00 35.48 3.16
1489 1496 7.986562 TGATAGCTATCGTGTATATCCAACTC 58.013 38.462 25.00 1.25 35.48 3.01
1490 1497 7.610305 TGATAGCTATCGTGTATATCCAACTCA 59.390 37.037 25.00 3.78 35.48 3.41
1491 1498 6.650427 AGCTATCGTGTATATCCAACTCAA 57.350 37.500 0.00 0.00 0.00 3.02
1492 1499 7.233389 AGCTATCGTGTATATCCAACTCAAT 57.767 36.000 0.00 0.00 0.00 2.57
1493 1500 7.093354 AGCTATCGTGTATATCCAACTCAATG 58.907 38.462 0.00 0.00 0.00 2.82
1494 1501 6.311445 GCTATCGTGTATATCCAACTCAATGG 59.689 42.308 0.00 0.00 42.12 3.16
1500 1507 1.002624 TCCAACTCAATGGACCCGC 60.003 57.895 0.00 0.00 44.52 6.13
1501 1508 1.002134 CCAACTCAATGGACCCGCT 60.002 57.895 0.00 0.00 43.54 5.52
1502 1509 0.251916 CCAACTCAATGGACCCGCTA 59.748 55.000 0.00 0.00 43.54 4.26
1503 1510 1.339631 CCAACTCAATGGACCCGCTAA 60.340 52.381 0.00 0.00 43.54 3.09
1504 1511 2.009774 CAACTCAATGGACCCGCTAAG 58.990 52.381 0.00 0.00 0.00 2.18
1505 1512 0.541863 ACTCAATGGACCCGCTAAGG 59.458 55.000 0.00 0.00 40.63 2.69
1514 1521 2.687566 CCGCTAAGGGGTGGGAGT 60.688 66.667 0.00 0.00 35.97 3.85
1515 1522 1.382146 CCGCTAAGGGGTGGGAGTA 60.382 63.158 0.00 0.00 35.97 2.59
1516 1523 0.763223 CCGCTAAGGGGTGGGAGTAT 60.763 60.000 0.00 0.00 35.97 2.12
1517 1524 0.393077 CGCTAAGGGGTGGGAGTATG 59.607 60.000 0.00 0.00 0.00 2.39
1518 1525 1.508256 GCTAAGGGGTGGGAGTATGT 58.492 55.000 0.00 0.00 0.00 2.29
1519 1526 2.686119 GCTAAGGGGTGGGAGTATGTA 58.314 52.381 0.00 0.00 0.00 2.29
1520 1527 2.367894 GCTAAGGGGTGGGAGTATGTAC 59.632 54.545 0.00 0.00 0.00 2.90
1521 1528 2.963654 AAGGGGTGGGAGTATGTACT 57.036 50.000 0.00 0.00 39.71 2.73
1542 1549 5.799827 CTCCTGGGAGTATAAAAGAGGAG 57.200 47.826 8.39 0.00 39.30 3.69
1543 1550 5.212745 CTCCTGGGAGTATAAAAGAGGAGT 58.787 45.833 8.39 0.00 40.13 3.85
1836 1850 3.057019 CACTTTTCGAGATTCCACACGA 58.943 45.455 0.00 0.00 0.00 4.35
1917 1933 2.450609 TTTCTTCTAAACCGCTCGCT 57.549 45.000 0.00 0.00 0.00 4.93
2054 2071 6.329496 TCGCAGAACTCTGTTTTTCAATTTT 58.671 32.000 8.46 0.00 45.45 1.82
2055 2072 6.811170 TCGCAGAACTCTGTTTTTCAATTTTT 59.189 30.769 8.46 0.00 45.45 1.94
2124 2141 2.809696 TCAGAACGAGACGTGTGATACA 59.190 45.455 0.00 0.00 39.99 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 85 1.750930 CCCGCCATGTCTAGCTCAT 59.249 57.895 0.00 0.00 0.00 2.90
86 92 4.479993 GCTCTGCCCGCCATGTCT 62.480 66.667 0.00 0.00 0.00 3.41
97 103 2.010582 ATCTCTCGAACCCGCTCTGC 62.011 60.000 0.00 0.00 35.37 4.26
104 110 2.860582 GCGATGAAGATCTCTCGAACCC 60.861 54.545 20.24 4.92 33.07 4.11
141 147 3.436359 GCCGCAATGGAATGTTCAAAATT 59.564 39.130 0.00 0.00 42.00 1.82
174 180 2.239402 TGCCCAAGCATAGATGTCTTCA 59.761 45.455 0.00 0.00 46.52 3.02
189 195 2.517959 CCTGTCTTCTCAAATGCCCAA 58.482 47.619 0.00 0.00 0.00 4.12
195 201 6.373774 CAGAGTAAATGCCTGTCTTCTCAAAT 59.626 38.462 0.00 0.00 0.00 2.32
243 249 3.250762 CCTGTCGCTCTTTTTGATTCACA 59.749 43.478 0.00 0.00 0.00 3.58
330 336 4.079385 ACCTTGGGGACTACTTTGAGTTTT 60.079 41.667 0.00 0.00 36.25 2.43
348 354 2.159114 CCACCAAAACACCTTGACCTTG 60.159 50.000 0.00 0.00 0.00 3.61
408 414 1.917782 GCTTCATGTGGCGGCGTTTA 61.918 55.000 9.37 0.00 0.00 2.01
618 624 3.134081 CCCACATCACCGTAACTAGGATT 59.866 47.826 0.00 0.00 0.00 3.01
627 633 1.815613 CAAATTGCCCACATCACCGTA 59.184 47.619 0.00 0.00 0.00 4.02
656 662 3.303263 CCGTTCGTGTGTTAACCGATTTT 60.303 43.478 2.48 0.00 31.85 1.82
664 670 1.070445 ACCATCCCGTTCGTGTGTTAA 59.930 47.619 0.00 0.00 0.00 2.01
735 741 1.203928 CTTGCTGCTTCGGTAGATCG 58.796 55.000 0.00 0.00 0.00 3.69
738 744 1.202582 GAGACTTGCTGCTTCGGTAGA 59.797 52.381 0.00 0.00 0.00 2.59
1142 1149 1.021390 CAGATGTGCTGGACCGTTCC 61.021 60.000 0.00 0.00 41.07 3.62
1178 1185 3.497118 CTCTCAGTCACAGAAAGCGTAG 58.503 50.000 0.00 0.00 0.00 3.51
1317 1324 9.523974 ACATCCTGCATGCATGTAGTATACACA 62.524 40.741 33.66 17.53 45.20 3.72
1318 1325 7.237510 ACATCCTGCATGCATGTAGTATACAC 61.238 42.308 33.66 14.30 45.20 2.90
1319 1326 5.221702 ACATCCTGCATGCATGTAGTATACA 60.222 40.000 33.66 18.76 45.95 2.29
1320 1327 5.240891 ACATCCTGCATGCATGTAGTATAC 58.759 41.667 33.66 15.57 38.62 1.47
1321 1328 5.488262 ACATCCTGCATGCATGTAGTATA 57.512 39.130 33.66 22.71 38.62 1.47
1322 1329 4.362470 ACATCCTGCATGCATGTAGTAT 57.638 40.909 33.66 25.34 38.62 2.12
1323 1330 3.843893 ACATCCTGCATGCATGTAGTA 57.156 42.857 33.66 24.37 38.62 1.82
1324 1331 2.723322 ACATCCTGCATGCATGTAGT 57.277 45.000 33.66 19.68 38.62 2.73
1325 1332 5.296035 CCATATACATCCTGCATGCATGTAG 59.704 44.000 31.13 31.13 39.77 2.74
1326 1333 5.045724 TCCATATACATCCTGCATGCATGTA 60.046 40.000 26.47 26.47 35.65 2.29
1327 1334 4.014406 CCATATACATCCTGCATGCATGT 58.986 43.478 26.79 24.38 35.65 3.21
1328 1335 4.266714 TCCATATACATCCTGCATGCATG 58.733 43.478 22.97 22.70 35.65 4.06
1329 1336 4.579647 TCCATATACATCCTGCATGCAT 57.420 40.909 22.97 8.57 35.65 3.96
1330 1337 4.579647 ATCCATATACATCCTGCATGCA 57.420 40.909 21.29 21.29 35.65 3.96
1331 1338 5.008415 GCTTATCCATATACATCCTGCATGC 59.992 44.000 11.82 11.82 35.65 4.06
1332 1339 6.117488 TGCTTATCCATATACATCCTGCATG 58.883 40.000 0.00 0.00 38.64 4.06
1333 1340 6.317663 TGCTTATCCATATACATCCTGCAT 57.682 37.500 0.00 0.00 0.00 3.96
1334 1341 5.760484 TGCTTATCCATATACATCCTGCA 57.240 39.130 0.00 0.00 0.00 4.41
1335 1342 5.530171 CCATGCTTATCCATATACATCCTGC 59.470 44.000 0.00 0.00 0.00 4.85
1336 1343 6.060136 CCCATGCTTATCCATATACATCCTG 58.940 44.000 0.00 0.00 0.00 3.86
1337 1344 5.133322 CCCCATGCTTATCCATATACATCCT 59.867 44.000 0.00 0.00 0.00 3.24
1338 1345 5.380043 CCCCATGCTTATCCATATACATCC 58.620 45.833 0.00 0.00 0.00 3.51
1339 1346 4.823989 GCCCCATGCTTATCCATATACATC 59.176 45.833 0.00 0.00 36.87 3.06
1340 1347 4.796606 GCCCCATGCTTATCCATATACAT 58.203 43.478 0.00 0.00 36.87 2.29
1341 1348 4.235079 GCCCCATGCTTATCCATATACA 57.765 45.455 0.00 0.00 36.87 2.29
1354 1361 2.902343 GAACGGCTAGCCCCATGC 60.902 66.667 28.09 8.87 41.71 4.06
1355 1362 2.203209 GGAACGGCTAGCCCCATG 60.203 66.667 28.09 16.11 0.00 3.66
1356 1363 3.489513 GGGAACGGCTAGCCCCAT 61.490 66.667 28.09 14.12 38.69 4.00
1358 1365 4.484872 GTGGGAACGGCTAGCCCC 62.485 72.222 28.09 22.22 41.31 5.80
1359 1366 2.552231 ATTGTGGGAACGGCTAGCCC 62.552 60.000 28.09 13.96 42.38 5.19
1360 1367 0.679960 AATTGTGGGAACGGCTAGCC 60.680 55.000 24.75 24.75 0.00 3.93
1361 1368 2.032680 TAATTGTGGGAACGGCTAGC 57.967 50.000 6.04 6.04 0.00 3.42
1362 1369 4.039973 TCCTATAATTGTGGGAACGGCTAG 59.960 45.833 4.75 0.00 0.00 3.42
1363 1370 3.968649 TCCTATAATTGTGGGAACGGCTA 59.031 43.478 4.75 0.00 0.00 3.93
1364 1371 2.775384 TCCTATAATTGTGGGAACGGCT 59.225 45.455 4.75 0.00 0.00 5.52
1365 1372 3.202829 TCCTATAATTGTGGGAACGGC 57.797 47.619 4.75 0.00 0.00 5.68
1366 1373 4.202419 TGGATCCTATAATTGTGGGAACGG 60.202 45.833 14.23 0.00 0.00 4.44
1367 1374 4.968259 TGGATCCTATAATTGTGGGAACG 58.032 43.478 14.23 0.00 0.00 3.95
1368 1375 4.762251 GCTGGATCCTATAATTGTGGGAAC 59.238 45.833 14.23 8.65 0.00 3.62
1369 1376 4.415179 TGCTGGATCCTATAATTGTGGGAA 59.585 41.667 14.23 0.00 0.00 3.97
1370 1377 3.980022 TGCTGGATCCTATAATTGTGGGA 59.020 43.478 14.23 9.71 0.00 4.37
1371 1378 4.074970 GTGCTGGATCCTATAATTGTGGG 58.925 47.826 14.23 0.00 0.00 4.61
1372 1379 4.516698 GTGTGCTGGATCCTATAATTGTGG 59.483 45.833 14.23 0.00 0.00 4.17
1373 1380 5.125356 TGTGTGCTGGATCCTATAATTGTG 58.875 41.667 14.23 0.00 0.00 3.33
1374 1381 5.372343 TGTGTGCTGGATCCTATAATTGT 57.628 39.130 14.23 0.00 0.00 2.71
1375 1382 6.250344 CATGTGTGCTGGATCCTATAATTG 57.750 41.667 14.23 0.00 0.00 2.32
1396 1403 6.572848 ACTTTTGTAAGTGTGCGCATGCAT 62.573 41.667 15.91 5.17 44.35 3.96
1397 1404 5.336793 ACTTTTGTAAGTGTGCGCATGCA 62.337 43.478 15.91 4.58 45.40 3.96
1398 1405 1.715519 CTTTTGTAAGTGTGCGCATGC 59.284 47.619 15.91 7.91 43.20 4.06
1399 1406 2.998772 ACTTTTGTAAGTGTGCGCATG 58.001 42.857 15.91 0.00 42.91 4.06
1400 1407 3.708563 AACTTTTGTAAGTGTGCGCAT 57.291 38.095 15.91 0.00 43.74 4.73
1401 1408 3.175152 CAAACTTTTGTAAGTGTGCGCA 58.825 40.909 5.66 5.66 43.74 6.09
1402 1409 3.816613 CAAACTTTTGTAAGTGTGCGC 57.183 42.857 0.00 0.00 43.74 6.09
1409 1416 8.861596 CGCTGCATGCAACAAACTTTTGTAAG 62.862 42.308 22.88 4.96 44.90 2.34
1410 1417 7.185186 CGCTGCATGCAACAAACTTTTGTAA 62.185 40.000 22.88 0.00 44.90 2.41
1411 1418 5.778192 CGCTGCATGCAACAAACTTTTGTA 61.778 41.667 22.88 0.00 44.90 2.41
1412 1419 5.064067 CGCTGCATGCAACAAACTTTTGT 62.064 43.478 22.88 1.35 43.49 2.83
1413 1420 2.597971 CGCTGCATGCAACAAACTTTTG 60.598 45.455 22.88 6.86 43.06 2.44
1414 1421 1.593933 CGCTGCATGCAACAAACTTTT 59.406 42.857 22.88 0.00 43.06 2.27
1415 1422 1.202394 TCGCTGCATGCAACAAACTTT 60.202 42.857 22.88 0.00 43.06 2.66
1416 1423 0.385029 TCGCTGCATGCAACAAACTT 59.615 45.000 22.88 0.00 43.06 2.66
1417 1424 0.599558 ATCGCTGCATGCAACAAACT 59.400 45.000 22.88 1.57 43.06 2.66
1418 1425 1.421382 AATCGCTGCATGCAACAAAC 58.579 45.000 22.88 7.94 43.06 2.93
1419 1426 2.151881 AAATCGCTGCATGCAACAAA 57.848 40.000 22.88 8.70 43.06 2.83
1420 1427 2.228582 ACTAAATCGCTGCATGCAACAA 59.771 40.909 22.88 2.17 43.06 2.83
1421 1428 1.811965 ACTAAATCGCTGCATGCAACA 59.188 42.857 22.88 8.61 43.06 3.33
1422 1429 2.549633 ACTAAATCGCTGCATGCAAC 57.450 45.000 22.88 16.89 43.06 4.17
1423 1430 3.574284 AAACTAAATCGCTGCATGCAA 57.426 38.095 22.88 7.52 43.06 4.08
1424 1431 3.191162 AGAAAACTAAATCGCTGCATGCA 59.809 39.130 21.29 21.29 43.06 3.96
1425 1432 3.762779 AGAAAACTAAATCGCTGCATGC 58.237 40.909 11.82 11.82 38.57 4.06
1426 1433 6.183360 GGAAAAGAAAACTAAATCGCTGCATG 60.183 38.462 0.00 0.00 0.00 4.06
1427 1434 5.863935 GGAAAAGAAAACTAAATCGCTGCAT 59.136 36.000 0.00 0.00 0.00 3.96
1428 1435 5.219633 GGAAAAGAAAACTAAATCGCTGCA 58.780 37.500 0.00 0.00 0.00 4.41
1429 1436 4.621460 GGGAAAAGAAAACTAAATCGCTGC 59.379 41.667 0.00 0.00 0.00 5.25
1430 1437 5.629435 GTGGGAAAAGAAAACTAAATCGCTG 59.371 40.000 0.00 0.00 0.00 5.18
1431 1438 5.278808 GGTGGGAAAAGAAAACTAAATCGCT 60.279 40.000 0.00 0.00 0.00 4.93
1432 1439 4.921515 GGTGGGAAAAGAAAACTAAATCGC 59.078 41.667 0.00 0.00 0.00 4.58
1433 1440 5.151389 CGGTGGGAAAAGAAAACTAAATCG 58.849 41.667 0.00 0.00 0.00 3.34
1434 1441 5.010314 ACCGGTGGGAAAAGAAAACTAAATC 59.990 40.000 6.12 0.00 36.97 2.17
1435 1442 4.897076 ACCGGTGGGAAAAGAAAACTAAAT 59.103 37.500 6.12 0.00 36.97 1.40
1436 1443 4.279982 ACCGGTGGGAAAAGAAAACTAAA 58.720 39.130 6.12 0.00 36.97 1.85
1437 1444 3.900971 ACCGGTGGGAAAAGAAAACTAA 58.099 40.909 6.12 0.00 36.97 2.24
1438 1445 3.581265 ACCGGTGGGAAAAGAAAACTA 57.419 42.857 6.12 0.00 36.97 2.24
1439 1446 2.429250 CAACCGGTGGGAAAAGAAAACT 59.571 45.455 8.52 0.00 36.97 2.66
1440 1447 2.482316 CCAACCGGTGGGAAAAGAAAAC 60.482 50.000 25.25 0.00 44.64 2.43
1441 1448 1.757699 CCAACCGGTGGGAAAAGAAAA 59.242 47.619 25.25 0.00 44.64 2.29
1442 1449 1.404843 CCAACCGGTGGGAAAAGAAA 58.595 50.000 25.25 0.00 44.64 2.52
1443 1450 3.119225 CCAACCGGTGGGAAAAGAA 57.881 52.632 25.25 0.00 44.64 2.52
1444 1451 4.911901 CCAACCGGTGGGAAAAGA 57.088 55.556 25.25 0.00 44.64 2.52
1452 1459 2.098293 GCTATCAAGCCAACCGGTG 58.902 57.895 8.52 1.82 43.40 4.94
1453 1460 4.637771 GCTATCAAGCCAACCGGT 57.362 55.556 0.00 0.00 43.40 5.28
1462 1469 8.462811 AGTTGGATATACACGATAGCTATCAAG 58.537 37.037 28.67 22.34 42.67 3.02
1463 1470 8.349568 AGTTGGATATACACGATAGCTATCAA 57.650 34.615 28.67 14.03 42.67 2.57
1464 1471 7.610305 TGAGTTGGATATACACGATAGCTATCA 59.390 37.037 28.67 13.16 42.67 2.15
1465 1472 7.986562 TGAGTTGGATATACACGATAGCTATC 58.013 38.462 21.75 21.75 42.67 2.08
1466 1473 7.939784 TGAGTTGGATATACACGATAGCTAT 57.060 36.000 5.76 5.76 42.67 2.97
1467 1474 7.754851 TTGAGTTGGATATACACGATAGCTA 57.245 36.000 0.00 0.00 42.67 3.32
1468 1475 6.650427 TTGAGTTGGATATACACGATAGCT 57.350 37.500 0.00 0.00 42.67 3.32
1469 1476 6.311445 CCATTGAGTTGGATATACACGATAGC 59.689 42.308 0.00 0.00 39.25 2.97
1470 1477 7.602753 TCCATTGAGTTGGATATACACGATAG 58.397 38.462 0.00 0.00 40.90 2.08
1471 1478 7.533289 TCCATTGAGTTGGATATACACGATA 57.467 36.000 0.00 0.00 40.90 2.92
1472 1479 6.419484 TCCATTGAGTTGGATATACACGAT 57.581 37.500 0.00 0.00 40.90 3.73
1473 1480 5.862678 TCCATTGAGTTGGATATACACGA 57.137 39.130 0.00 0.00 40.90 4.35
1482 1489 1.002624 GCGGGTCCATTGAGTTGGA 60.003 57.895 0.00 0.00 43.56 3.53
1483 1490 0.251916 TAGCGGGTCCATTGAGTTGG 59.748 55.000 0.00 0.00 38.18 3.77
1484 1491 2.009774 CTTAGCGGGTCCATTGAGTTG 58.990 52.381 0.00 0.00 0.00 3.16
1485 1492 1.065418 CCTTAGCGGGTCCATTGAGTT 60.065 52.381 0.00 0.00 0.00 3.01
1486 1493 0.541863 CCTTAGCGGGTCCATTGAGT 59.458 55.000 0.00 0.00 0.00 3.41
1487 1494 3.386543 CCTTAGCGGGTCCATTGAG 57.613 57.895 0.00 0.00 0.00 3.02
1497 1504 0.763223 ATACTCCCACCCCTTAGCGG 60.763 60.000 0.00 0.00 0.00 5.52
1498 1505 0.393077 CATACTCCCACCCCTTAGCG 59.607 60.000 0.00 0.00 0.00 4.26
1499 1506 1.508256 ACATACTCCCACCCCTTAGC 58.492 55.000 0.00 0.00 0.00 3.09
1500 1507 3.896272 GAGTACATACTCCCACCCCTTAG 59.104 52.174 7.70 0.00 45.33 2.18
1501 1508 3.919834 GAGTACATACTCCCACCCCTTA 58.080 50.000 7.70 0.00 45.33 2.69
1502 1509 2.760581 GAGTACATACTCCCACCCCTT 58.239 52.381 7.70 0.00 45.33 3.95
1503 1510 2.473576 GAGTACATACTCCCACCCCT 57.526 55.000 7.70 0.00 45.33 4.79
1520 1527 5.799827 CTCCTCTTTTATACTCCCAGGAG 57.200 47.826 12.29 12.29 46.91 3.69
1521 1528 5.209659 GACTCCTCTTTTATACTCCCAGGA 58.790 45.833 0.00 0.00 0.00 3.86
1522 1529 4.345547 GGACTCCTCTTTTATACTCCCAGG 59.654 50.000 0.00 0.00 0.00 4.45
1523 1530 5.212745 AGGACTCCTCTTTTATACTCCCAG 58.787 45.833 0.00 0.00 0.00 4.45
1524 1531 5.222278 AGGACTCCTCTTTTATACTCCCA 57.778 43.478 0.00 0.00 0.00 4.37
1534 1541 9.523168 GTCTGTGTATATATAGGACTCCTCTTT 57.477 37.037 0.00 0.00 34.61 2.52
1535 1542 7.825270 CGTCTGTGTATATATAGGACTCCTCTT 59.175 40.741 0.00 0.00 34.61 2.85
1536 1543 7.332557 CGTCTGTGTATATATAGGACTCCTCT 58.667 42.308 0.00 0.00 34.61 3.69
1537 1544 6.539464 CCGTCTGTGTATATATAGGACTCCTC 59.461 46.154 0.00 0.00 34.61 3.71
1538 1545 6.012683 ACCGTCTGTGTATATATAGGACTCCT 60.013 42.308 2.31 2.31 37.71 3.69
1539 1546 6.179040 ACCGTCTGTGTATATATAGGACTCC 58.821 44.000 0.00 0.00 0.00 3.85
1540 1547 7.104939 AGACCGTCTGTGTATATATAGGACTC 58.895 42.308 0.00 0.00 0.00 3.36
1541 1548 7.018487 AGACCGTCTGTGTATATATAGGACT 57.982 40.000 0.00 0.00 0.00 3.85
1542 1549 8.961294 ATAGACCGTCTGTGTATATATAGGAC 57.039 38.462 11.52 0.14 32.00 3.85
1543 1550 9.610705 GAATAGACCGTCTGTGTATATATAGGA 57.389 37.037 11.52 0.00 32.56 2.94
1600 1607 1.218875 CGTGCAGTGCGAAAGTGGTA 61.219 55.000 11.20 0.00 0.00 3.25
1608 1617 3.337889 GTTCAGCGTGCAGTGCGA 61.338 61.111 11.20 0.00 37.44 5.10
1752 1766 5.446709 ACGGTATATTACACGTCTCATTCG 58.553 41.667 0.00 0.00 32.75 3.34
1836 1850 7.041848 GCACCAATTTCAAAACTGCTCTTAAAT 60.042 33.333 0.00 0.00 0.00 1.40
1917 1933 2.095213 GCGTATCGTTTGCTTCATTCCA 59.905 45.455 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.