Multiple sequence alignment - TraesCS6B01G166000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G166000 chr6B 100.000 3284 0 0 1 3284 172576881 172573598 0.000000e+00 6065.0
1 TraesCS6B01G166000 chr6B 88.740 1341 119 15 1032 2354 172465868 172464542 0.000000e+00 1611.0
2 TraesCS6B01G166000 chr6B 89.060 649 66 3 1652 2295 172368519 172367871 0.000000e+00 800.0
3 TraesCS6B01G166000 chr6B 83.876 676 80 23 935 1596 172369274 172368614 4.660000e-173 617.0
4 TraesCS6B01G166000 chr6D 94.295 2892 85 27 455 3284 90193298 90196171 0.000000e+00 4353.0
5 TraesCS6B01G166000 chr6D 84.781 1393 169 25 935 2289 90347495 90348882 0.000000e+00 1358.0
6 TraesCS6B01G166000 chr6D 83.453 278 43 3 404 678 444451371 444451648 4.210000e-64 255.0
7 TraesCS6B01G166000 chr6D 82.699 289 43 6 396 678 268058403 268058690 1.960000e-62 250.0
8 TraesCS6B01G166000 chr6A 94.651 1720 50 17 657 2348 108653371 108651666 0.000000e+00 2628.0
9 TraesCS6B01G166000 chr6A 85.693 1335 150 27 988 2295 108217325 108216005 0.000000e+00 1369.0
10 TraesCS6B01G166000 chr6A 89.381 678 65 3 1680 2354 108332002 108331329 0.000000e+00 846.0
11 TraesCS6B01G166000 chr6A 91.852 540 34 7 2339 2871 108650403 108649867 0.000000e+00 745.0
12 TraesCS6B01G166000 chr6A 86.842 684 56 22 935 1598 108332717 108332048 0.000000e+00 734.0
13 TraesCS6B01G166000 chr6A 90.000 380 27 8 2904 3282 108649869 108649500 6.370000e-132 481.0
14 TraesCS6B01G166000 chr1D 93.448 290 8 2 1 290 17625747 17625469 1.410000e-113 420.0
15 TraesCS6B01G166000 chr1D 91.096 292 15 2 1 292 99833089 99833369 5.140000e-103 385.0
16 TraesCS6B01G166000 chr5D 93.103 290 10 1 1 290 76789775 76790054 1.820000e-112 416.0
17 TraesCS6B01G166000 chr5D 92.414 290 12 1 1 290 468357628 468357349 3.950000e-109 405.0
18 TraesCS6B01G166000 chr5D 81.908 304 48 6 394 691 70678355 70678657 1.960000e-62 250.0
19 TraesCS6B01G166000 chr2D 92.708 288 10 2 4 290 447254139 447254416 3.950000e-109 405.0
20 TraesCS6B01G166000 chr2D 93.281 253 5 2 42 292 635080259 635080501 2.410000e-96 363.0
21 TraesCS6B01G166000 chr2D 82.867 286 45 4 396 678 273235910 273235626 1.510000e-63 254.0
22 TraesCS6B01G166000 chr2D 92.308 169 3 1 121 289 60773432 60773274 7.090000e-57 231.0
23 TraesCS6B01G166000 chr2D 90.164 122 2 1 172 293 618912001 618912112 2.040000e-32 150.0
24 TraesCS6B01G166000 chr3B 93.214 280 9 1 13 292 116977338 116977607 1.420000e-108 403.0
25 TraesCS6B01G166000 chr3B 84.397 282 40 4 404 682 284406948 284407228 1.160000e-69 274.0
26 TraesCS6B01G166000 chr1B 92.527 281 10 3 16 295 46668081 46667811 3.070000e-105 392.0
27 TraesCS6B01G166000 chr1B 91.633 251 9 2 41 291 565995148 565994910 1.460000e-88 337.0
28 TraesCS6B01G166000 chr1B 86.301 292 22 6 1 292 576053722 576053449 5.330000e-78 302.0
29 TraesCS6B01G166000 chr1B 83.929 280 39 5 404 678 270298690 270298412 2.510000e-66 263.0
30 TraesCS6B01G166000 chr1B 83.200 125 16 5 2562 2683 426961528 426961650 3.460000e-20 110.0
31 TraesCS6B01G166000 chr2B 90.909 297 17 1 1 297 142538372 142538086 1.100000e-104 390.0
32 TraesCS6B01G166000 chr2B 81.073 354 54 13 2863 3206 147489378 147489028 1.500000e-68 270.0
33 TraesCS6B01G166000 chr5B 91.873 283 13 1 13 295 595640772 595640500 1.430000e-103 387.0
34 TraesCS6B01G166000 chr5B 88.514 148 5 3 153 300 711906450 711906315 5.640000e-38 169.0
35 TraesCS6B01G166000 chr5B 87.692 65 8 0 2739 2803 79811455 79811391 3.510000e-10 76.8
36 TraesCS6B01G166000 chr4A 91.034 290 14 4 4 292 13065721 13065443 6.650000e-102 381.0
37 TraesCS6B01G166000 chr7D 83.219 292 42 7 393 679 603801525 603801814 9.040000e-66 261.0
38 TraesCS6B01G166000 chr7D 78.187 353 65 9 2863 3206 126671972 126672321 7.140000e-52 215.0
39 TraesCS6B01G166000 chr7D 93.333 60 1 3 2562 2620 635514263 635514206 5.840000e-13 86.1
40 TraesCS6B01G166000 chr3A 83.813 278 40 5 404 677 538858620 538858344 3.250000e-65 259.0
41 TraesCS6B01G166000 chr2A 82.993 294 42 7 394 682 99129975 99130265 3.250000e-65 259.0
42 TraesCS6B01G166000 chr2A 82.528 269 43 4 2940 3205 94289155 94288888 1.970000e-57 233.0
43 TraesCS6B01G166000 chr2A 87.097 62 8 0 2863 2924 94289264 94289203 1.630000e-08 71.3
44 TraesCS6B01G166000 chr3D 81.124 249 38 8 3013 3257 517738696 517738453 1.200000e-44 191.0
45 TraesCS6B01G166000 chr3D 89.157 83 6 3 2566 2646 517738779 517738698 2.090000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G166000 chr6B 172573598 172576881 3283 True 6065.000000 6065 100.000000 1 3284 1 chr6B.!!$R2 3283
1 TraesCS6B01G166000 chr6B 172464542 172465868 1326 True 1611.000000 1611 88.740000 1032 2354 1 chr6B.!!$R1 1322
2 TraesCS6B01G166000 chr6B 172367871 172369274 1403 True 708.500000 800 86.468000 935 2295 2 chr6B.!!$R3 1360
3 TraesCS6B01G166000 chr6D 90193298 90196171 2873 False 4353.000000 4353 94.295000 455 3284 1 chr6D.!!$F1 2829
4 TraesCS6B01G166000 chr6D 90347495 90348882 1387 False 1358.000000 1358 84.781000 935 2289 1 chr6D.!!$F2 1354
5 TraesCS6B01G166000 chr6A 108216005 108217325 1320 True 1369.000000 1369 85.693000 988 2295 1 chr6A.!!$R1 1307
6 TraesCS6B01G166000 chr6A 108649500 108653371 3871 True 1284.666667 2628 92.167667 657 3282 3 chr6A.!!$R3 2625
7 TraesCS6B01G166000 chr6A 108331329 108332717 1388 True 790.000000 846 88.111500 935 2354 2 chr6A.!!$R2 1419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 1.078759 CGCGAGCGAAAGGAGAATGT 61.079 55.000 12.58 0.0 42.83 2.71 F
1848 1978 1.079405 GATCGTCGTCCCTGGCAAA 60.079 57.895 0.00 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 2400 0.250234 ACTAGCAAAGATGGCGCAGA 59.750 50.0 10.83 0.0 36.08 4.26 R
3044 4475 1.295792 TTGTGCTCCACGTCAGTTTC 58.704 50.0 0.00 0.0 37.14 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.925861 GGCGCCAGATCTGCCCTC 62.926 72.222 24.80 5.24 43.06 4.30
28 29 4.166888 GCGCCAGATCTGCCCTCA 62.167 66.667 17.76 0.00 0.00 3.86
29 30 2.202987 CGCCAGATCTGCCCTCAC 60.203 66.667 17.76 1.19 0.00 3.51
30 31 2.191641 GCCAGATCTGCCCTCACC 59.808 66.667 17.76 0.00 0.00 4.02
31 32 2.373707 GCCAGATCTGCCCTCACCT 61.374 63.158 17.76 0.00 0.00 4.00
32 33 1.525923 CCAGATCTGCCCTCACCTG 59.474 63.158 17.76 0.00 0.00 4.00
33 34 1.525923 CAGATCTGCCCTCACCTGG 59.474 63.158 10.38 0.00 0.00 4.45
51 52 4.899239 CCGCCCTCACGCCAGATC 62.899 72.222 0.00 0.00 0.00 2.75
52 53 4.899239 CGCCCTCACGCCAGATCC 62.899 72.222 0.00 0.00 0.00 3.36
53 54 3.785859 GCCCTCACGCCAGATCCA 61.786 66.667 0.00 0.00 0.00 3.41
54 55 2.187946 CCCTCACGCCAGATCCAC 59.812 66.667 0.00 0.00 0.00 4.02
55 56 2.362369 CCCTCACGCCAGATCCACT 61.362 63.158 0.00 0.00 0.00 4.00
56 57 1.142748 CCTCACGCCAGATCCACTC 59.857 63.158 0.00 0.00 0.00 3.51
57 58 1.226802 CTCACGCCAGATCCACTCG 60.227 63.158 0.00 0.00 0.00 4.18
58 59 2.887568 CACGCCAGATCCACTCGC 60.888 66.667 0.00 0.00 0.00 5.03
59 60 4.148825 ACGCCAGATCCACTCGCC 62.149 66.667 0.00 0.00 29.06 5.54
60 61 3.842923 CGCCAGATCCACTCGCCT 61.843 66.667 0.00 0.00 29.06 5.52
61 62 2.202987 GCCAGATCCACTCGCCTG 60.203 66.667 0.00 0.00 0.00 4.85
62 63 2.202987 CCAGATCCACTCGCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
63 64 2.580815 CAGATCCACTCGCCTGCA 59.419 61.111 0.00 0.00 0.00 4.41
64 65 1.812922 CAGATCCACTCGCCTGCAC 60.813 63.158 0.00 0.00 0.00 4.57
65 66 2.887568 GATCCACTCGCCTGCACG 60.888 66.667 0.00 0.00 0.00 5.34
138 139 4.075793 CTCGTGGGGAGGGGAGGA 62.076 72.222 0.00 0.00 39.22 3.71
139 140 4.393778 TCGTGGGGAGGGGAGGAC 62.394 72.222 0.00 0.00 0.00 3.85
213 214 4.798682 GAGGGAGGGGGAGGCGAA 62.799 72.222 0.00 0.00 0.00 4.70
214 215 4.806339 AGGGAGGGGGAGGCGAAG 62.806 72.222 0.00 0.00 0.00 3.79
217 218 3.787001 GAGGGGGAGGCGAAGGTG 61.787 72.222 0.00 0.00 0.00 4.00
218 219 4.658786 AGGGGGAGGCGAAGGTGT 62.659 66.667 0.00 0.00 0.00 4.16
219 220 4.410400 GGGGGAGGCGAAGGTGTG 62.410 72.222 0.00 0.00 0.00 3.82
220 221 4.410400 GGGGAGGCGAAGGTGTGG 62.410 72.222 0.00 0.00 0.00 4.17
221 222 4.410400 GGGAGGCGAAGGTGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
222 223 3.319198 GGAGGCGAAGGTGTGGGA 61.319 66.667 0.00 0.00 0.00 4.37
223 224 2.266055 GAGGCGAAGGTGTGGGAG 59.734 66.667 0.00 0.00 0.00 4.30
224 225 3.316573 GAGGCGAAGGTGTGGGAGG 62.317 68.421 0.00 0.00 0.00 4.30
227 228 4.760047 CGAAGGTGTGGGAGGCGG 62.760 72.222 0.00 0.00 0.00 6.13
297 298 4.094684 CGCGAGCGAAAGGAGAAT 57.905 55.556 12.58 0.00 42.83 2.40
298 299 1.633171 CGCGAGCGAAAGGAGAATG 59.367 57.895 12.58 0.00 42.83 2.67
299 300 1.078759 CGCGAGCGAAAGGAGAATGT 61.079 55.000 12.58 0.00 42.83 2.71
300 301 1.797713 CGCGAGCGAAAGGAGAATGTA 60.798 52.381 12.58 0.00 42.83 2.29
301 302 1.855360 GCGAGCGAAAGGAGAATGTAG 59.145 52.381 0.00 0.00 0.00 2.74
302 303 2.464865 CGAGCGAAAGGAGAATGTAGG 58.535 52.381 0.00 0.00 0.00 3.18
303 304 2.099263 CGAGCGAAAGGAGAATGTAGGA 59.901 50.000 0.00 0.00 0.00 2.94
304 305 3.712187 GAGCGAAAGGAGAATGTAGGAG 58.288 50.000 0.00 0.00 0.00 3.69
305 306 2.159028 AGCGAAAGGAGAATGTAGGAGC 60.159 50.000 0.00 0.00 0.00 4.70
306 307 2.159028 GCGAAAGGAGAATGTAGGAGCT 60.159 50.000 0.00 0.00 0.00 4.09
307 308 3.452474 CGAAAGGAGAATGTAGGAGCTG 58.548 50.000 0.00 0.00 0.00 4.24
308 309 3.739519 CGAAAGGAGAATGTAGGAGCTGG 60.740 52.174 0.00 0.00 0.00 4.85
309 310 2.856760 AGGAGAATGTAGGAGCTGGA 57.143 50.000 0.00 0.00 0.00 3.86
310 311 2.676748 AGGAGAATGTAGGAGCTGGAG 58.323 52.381 0.00 0.00 0.00 3.86
311 312 2.023501 AGGAGAATGTAGGAGCTGGAGT 60.024 50.000 0.00 0.00 0.00 3.85
312 313 3.205507 AGGAGAATGTAGGAGCTGGAGTA 59.794 47.826 0.00 0.00 0.00 2.59
313 314 3.319689 GGAGAATGTAGGAGCTGGAGTAC 59.680 52.174 0.00 0.00 0.00 2.73
314 315 3.301274 AGAATGTAGGAGCTGGAGTACC 58.699 50.000 0.00 0.00 0.00 3.34
315 316 2.848678 ATGTAGGAGCTGGAGTACCA 57.151 50.000 0.00 0.00 44.76 3.25
316 317 2.615986 TGTAGGAGCTGGAGTACCAA 57.384 50.000 0.00 0.00 46.32 3.67
317 318 2.176889 TGTAGGAGCTGGAGTACCAAC 58.823 52.381 0.00 0.00 46.32 3.77
318 319 2.225293 TGTAGGAGCTGGAGTACCAACT 60.225 50.000 0.00 0.00 46.32 3.16
319 320 2.921834 AGGAGCTGGAGTACCAACTA 57.078 50.000 0.00 0.00 46.32 2.24
320 321 3.185880 AGGAGCTGGAGTACCAACTAA 57.814 47.619 0.00 0.00 46.32 2.24
321 322 2.832733 AGGAGCTGGAGTACCAACTAAC 59.167 50.000 0.00 0.00 46.32 2.34
322 323 2.093606 GGAGCTGGAGTACCAACTAACC 60.094 54.545 0.00 0.00 46.32 2.85
323 324 2.565834 GAGCTGGAGTACCAACTAACCA 59.434 50.000 0.00 0.00 46.32 3.67
324 325 3.182152 AGCTGGAGTACCAACTAACCAT 58.818 45.455 0.00 0.00 46.32 3.55
325 326 4.359105 AGCTGGAGTACCAACTAACCATA 58.641 43.478 0.00 0.00 46.32 2.74
326 327 4.969359 AGCTGGAGTACCAACTAACCATAT 59.031 41.667 0.00 0.00 46.32 1.78
327 328 5.057149 GCTGGAGTACCAACTAACCATATG 58.943 45.833 0.00 0.00 46.32 1.78
328 329 5.163343 GCTGGAGTACCAACTAACCATATGA 60.163 44.000 3.65 0.00 46.32 2.15
329 330 6.464465 GCTGGAGTACCAACTAACCATATGAT 60.464 42.308 3.65 0.00 46.32 2.45
330 331 7.256190 GCTGGAGTACCAACTAACCATATGATA 60.256 40.741 3.65 0.00 46.32 2.15
331 332 7.959175 TGGAGTACCAACTAACCATATGATAC 58.041 38.462 3.65 0.00 43.91 2.24
332 333 7.787904 TGGAGTACCAACTAACCATATGATACT 59.212 37.037 3.65 0.00 43.91 2.12
333 334 8.648693 GGAGTACCAACTAACCATATGATACTT 58.351 37.037 3.65 0.00 35.56 2.24
335 336 9.832445 AGTACCAACTAACCATATGATACTTTG 57.168 33.333 3.65 2.26 32.84 2.77
336 337 9.609346 GTACCAACTAACCATATGATACTTTGT 57.391 33.333 3.65 0.00 0.00 2.83
385 386 4.762289 AAAGGCTAGAGTTGACCATAGG 57.238 45.455 0.00 0.00 0.00 2.57
386 387 3.689872 AGGCTAGAGTTGACCATAGGA 57.310 47.619 0.00 0.00 0.00 2.94
387 388 3.571590 AGGCTAGAGTTGACCATAGGAG 58.428 50.000 0.00 0.00 0.00 3.69
388 389 2.630580 GGCTAGAGTTGACCATAGGAGG 59.369 54.545 0.00 0.00 0.00 4.30
389 390 3.567397 GCTAGAGTTGACCATAGGAGGA 58.433 50.000 0.00 0.00 0.00 3.71
390 391 3.319689 GCTAGAGTTGACCATAGGAGGAC 59.680 52.174 0.00 0.00 0.00 3.85
391 392 2.379972 AGAGTTGACCATAGGAGGACG 58.620 52.381 0.00 0.00 0.00 4.79
392 393 2.025226 AGAGTTGACCATAGGAGGACGA 60.025 50.000 0.00 0.00 0.00 4.20
393 394 2.959707 GAGTTGACCATAGGAGGACGAT 59.040 50.000 0.00 0.00 0.00 3.73
394 395 4.141228 AGAGTTGACCATAGGAGGACGATA 60.141 45.833 0.00 0.00 0.00 2.92
395 396 4.543689 AGTTGACCATAGGAGGACGATAA 58.456 43.478 0.00 0.00 0.00 1.75
396 397 4.585162 AGTTGACCATAGGAGGACGATAAG 59.415 45.833 0.00 0.00 0.00 1.73
397 398 4.448720 TGACCATAGGAGGACGATAAGA 57.551 45.455 0.00 0.00 0.00 2.10
398 399 4.142790 TGACCATAGGAGGACGATAAGAC 58.857 47.826 0.00 0.00 0.00 3.01
399 400 4.141228 TGACCATAGGAGGACGATAAGACT 60.141 45.833 0.00 0.00 0.00 3.24
400 401 4.145807 ACCATAGGAGGACGATAAGACTG 58.854 47.826 0.00 0.00 0.00 3.51
401 402 3.508012 CCATAGGAGGACGATAAGACTGG 59.492 52.174 0.00 0.00 0.00 4.00
402 403 2.830651 AGGAGGACGATAAGACTGGT 57.169 50.000 0.00 0.00 0.00 4.00
403 404 2.657143 AGGAGGACGATAAGACTGGTC 58.343 52.381 0.00 0.00 0.00 4.02
404 405 2.025226 AGGAGGACGATAAGACTGGTCA 60.025 50.000 3.51 0.00 0.00 4.02
405 406 2.959707 GGAGGACGATAAGACTGGTCAT 59.040 50.000 3.51 0.00 0.00 3.06
406 407 4.141228 AGGAGGACGATAAGACTGGTCATA 60.141 45.833 3.51 0.00 0.00 2.15
407 408 4.216687 GGAGGACGATAAGACTGGTCATAG 59.783 50.000 3.51 0.00 0.00 2.23
408 409 4.794334 AGGACGATAAGACTGGTCATAGT 58.206 43.478 3.51 0.00 0.00 2.12
409 410 4.580995 AGGACGATAAGACTGGTCATAGTG 59.419 45.833 3.51 0.00 0.00 2.74
410 411 4.261656 GGACGATAAGACTGGTCATAGTGG 60.262 50.000 3.51 0.00 0.00 4.00
411 412 3.637229 ACGATAAGACTGGTCATAGTGGG 59.363 47.826 3.51 0.00 0.00 4.61
412 413 3.889538 CGATAAGACTGGTCATAGTGGGA 59.110 47.826 3.51 0.00 0.00 4.37
413 414 4.022762 CGATAAGACTGGTCATAGTGGGAG 60.023 50.000 3.51 0.00 0.00 4.30
414 415 2.930109 AGACTGGTCATAGTGGGAGT 57.070 50.000 3.51 0.00 0.00 3.85
415 416 4.332683 AAGACTGGTCATAGTGGGAGTA 57.667 45.455 3.51 0.00 0.00 2.59
416 417 4.332683 AGACTGGTCATAGTGGGAGTAA 57.667 45.455 3.51 0.00 0.00 2.24
417 418 4.024670 AGACTGGTCATAGTGGGAGTAAC 58.975 47.826 3.51 0.00 0.00 2.50
418 419 4.024670 GACTGGTCATAGTGGGAGTAACT 58.975 47.826 0.00 0.00 0.00 2.24
419 420 4.426704 ACTGGTCATAGTGGGAGTAACTT 58.573 43.478 0.00 0.00 0.00 2.66
420 421 5.586877 ACTGGTCATAGTGGGAGTAACTTA 58.413 41.667 0.00 0.00 0.00 2.24
421 422 6.203072 ACTGGTCATAGTGGGAGTAACTTAT 58.797 40.000 0.00 0.00 0.00 1.73
422 423 7.359849 ACTGGTCATAGTGGGAGTAACTTATA 58.640 38.462 0.00 0.00 0.00 0.98
423 424 7.842743 ACTGGTCATAGTGGGAGTAACTTATAA 59.157 37.037 0.00 0.00 0.00 0.98
424 425 8.792830 TGGTCATAGTGGGAGTAACTTATAAT 57.207 34.615 0.00 0.00 0.00 1.28
425 426 9.886337 TGGTCATAGTGGGAGTAACTTATAATA 57.114 33.333 0.00 0.00 0.00 0.98
488 489 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
499 500 4.018490 ACATATGTGTGGTGTCATGCAAT 58.982 39.130 7.78 0.00 37.14 3.56
503 504 3.073678 TGTGTGGTGTCATGCAATACTC 58.926 45.455 0.00 0.00 0.00 2.59
504 505 2.420022 GTGTGGTGTCATGCAATACTCC 59.580 50.000 13.27 13.27 0.00 3.85
505 506 2.017049 GTGGTGTCATGCAATACTCCC 58.983 52.381 16.05 10.43 0.00 4.30
520 521 8.330247 TGCAATACTCCCTTTATTAGGTTGTAA 58.670 33.333 0.00 0.00 43.07 2.41
557 558 9.508642 TCTTGTTATGTGTGATGTTAACCATAA 57.491 29.630 2.48 5.98 32.56 1.90
567 568 8.941977 TGTGATGTTAACCATAATGTGAGTAAC 58.058 33.333 2.48 0.00 32.56 2.50
590 591 5.590259 ACATATTTTGTACCACATGCCTCTC 59.410 40.000 0.00 0.00 36.57 3.20
635 638 7.065085 GCCACATCATCTATTTTGCGTAGATAT 59.935 37.037 0.00 0.00 36.91 1.63
636 639 8.385858 CCACATCATCTATTTTGCGTAGATATG 58.614 37.037 0.00 0.00 36.91 1.78
638 641 8.929746 ACATCATCTATTTTGCGTAGATATGTG 58.070 33.333 12.27 7.80 36.91 3.21
639 642 8.929746 CATCATCTATTTTGCGTAGATATGTGT 58.070 33.333 0.00 0.00 36.91 3.72
640 643 8.298030 TCATCTATTTTGCGTAGATATGTGTG 57.702 34.615 0.00 0.00 36.91 3.82
641 644 8.141268 TCATCTATTTTGCGTAGATATGTGTGA 58.859 33.333 0.00 0.00 36.91 3.58
643 646 8.298030 TCTATTTTGCGTAGATATGTGTGATG 57.702 34.615 0.00 0.00 0.00 3.07
645 648 6.735678 TTTTGCGTAGATATGTGTGATGTT 57.264 33.333 0.00 0.00 0.00 2.71
646 649 7.835634 TTTTGCGTAGATATGTGTGATGTTA 57.164 32.000 0.00 0.00 0.00 2.41
648 651 7.637709 TTGCGTAGATATGTGTGATGTTATC 57.362 36.000 0.00 0.00 0.00 1.75
649 652 6.744112 TGCGTAGATATGTGTGATGTTATCA 58.256 36.000 0.00 0.00 36.84 2.15
650 653 7.378181 TGCGTAGATATGTGTGATGTTATCAT 58.622 34.615 0.00 0.00 42.04 2.45
651 654 7.872483 TGCGTAGATATGTGTGATGTTATCATT 59.128 33.333 0.00 0.00 42.04 2.57
652 655 8.712363 GCGTAGATATGTGTGATGTTATCATTT 58.288 33.333 0.00 0.00 42.04 2.32
667 689 6.814644 TGTTATCATTTACGTTACTCCCACTG 59.185 38.462 0.00 0.00 0.00 3.66
688 710 3.952323 TGTGGATAGTCTAAGGGTTCTCG 59.048 47.826 0.00 0.00 0.00 4.04
707 729 7.063191 GGTTCTCGTAAAGTTCATCCTCTTTAC 59.937 40.741 14.08 14.08 45.65 2.01
884 914 5.640783 ACATCATGTTATGGAGTGCATATCG 59.359 40.000 5.07 0.00 0.00 2.92
920 950 1.132834 TGCACCGCTCATTTGCATTAG 59.867 47.619 0.00 0.00 41.29 1.73
921 951 1.133025 GCACCGCTCATTTGCATTAGT 59.867 47.619 0.00 0.00 36.22 2.24
922 952 2.354510 GCACCGCTCATTTGCATTAGTA 59.645 45.455 0.00 0.00 36.22 1.82
930 960 7.239271 CGCTCATTTGCATTAGTATTATCCTG 58.761 38.462 0.00 0.00 0.00 3.86
931 961 7.095060 CGCTCATTTGCATTAGTATTATCCTGT 60.095 37.037 0.00 0.00 0.00 4.00
962 997 8.621286 AGTTCTATAAAAGGATACCAAATTGCG 58.379 33.333 0.00 0.00 37.17 4.85
1020 1061 2.202623 GGTAGTCGCAGGTGCTCG 60.203 66.667 0.00 0.00 39.32 5.03
1044 1106 1.513158 CGTTGTCCTCGCCATCTCT 59.487 57.895 0.00 0.00 0.00 3.10
1123 1188 2.178521 CGTTCGGTGACTCCCTCG 59.821 66.667 0.00 0.00 0.00 4.63
1561 1643 2.819284 GCTCCCGGGGATGGTAAGG 61.819 68.421 23.50 3.86 0.00 2.69
1628 1751 7.493645 TCAATGTGATTCATCAGATCTGTACAC 59.506 37.037 21.92 19.93 39.55 2.90
1848 1978 1.079405 GATCGTCGTCCCTGGCAAA 60.079 57.895 0.00 0.00 0.00 3.68
2478 3887 1.681538 TGCCCAGTAGCGAAACAAAA 58.318 45.000 0.00 0.00 34.65 2.44
2531 3943 5.424895 TGCCATGCTAAATAAAATCCCAGTT 59.575 36.000 0.00 0.00 0.00 3.16
2560 3972 3.893813 AGCAGAAAATTGCCAGGGATATC 59.106 43.478 0.00 0.00 45.18 1.63
3044 4475 4.977347 GGCAAAAATGCATTGGTGAAAAAG 59.023 37.500 21.09 4.61 36.33 2.27
3045 4476 5.221009 GGCAAAAATGCATTGGTGAAAAAGA 60.221 36.000 21.09 0.00 36.33 2.52
3104 4535 4.020307 TCCTCATTAGTTGATGCTGTGTCA 60.020 41.667 0.00 0.00 32.72 3.58
3105 4536 4.880120 CCTCATTAGTTGATGCTGTGTCAT 59.120 41.667 0.00 0.00 32.72 3.06
3106 4537 5.356190 CCTCATTAGTTGATGCTGTGTCATT 59.644 40.000 0.00 0.00 32.72 2.57
3107 4538 6.539826 CCTCATTAGTTGATGCTGTGTCATTA 59.460 38.462 0.00 0.00 32.72 1.90
3213 4644 9.988815 ACATTACACAAACTAAATTTTGCCATA 57.011 25.926 0.00 0.00 39.67 2.74
3250 4681 7.713764 AAGTTTGCCATGTCAATAAAAAGTC 57.286 32.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.525923 CAGGTGAGGGCAGATCTGG 59.474 63.158 23.89 6.34 0.00 3.86
15 16 1.525923 CCAGGTGAGGGCAGATCTG 59.474 63.158 18.84 18.84 0.00 2.90
16 17 4.063335 CCAGGTGAGGGCAGATCT 57.937 61.111 0.00 0.00 0.00 2.75
35 36 4.899239 GGATCTGGCGTGAGGGCG 62.899 72.222 0.00 0.00 46.04 6.13
36 37 3.785859 TGGATCTGGCGTGAGGGC 61.786 66.667 0.00 0.00 42.69 5.19
37 38 2.187946 GTGGATCTGGCGTGAGGG 59.812 66.667 0.00 0.00 0.00 4.30
38 39 1.142748 GAGTGGATCTGGCGTGAGG 59.857 63.158 0.00 0.00 0.00 3.86
39 40 1.226802 CGAGTGGATCTGGCGTGAG 60.227 63.158 0.00 0.00 0.00 3.51
40 41 2.885113 CGAGTGGATCTGGCGTGA 59.115 61.111 0.00 0.00 0.00 4.35
41 42 2.887568 GCGAGTGGATCTGGCGTG 60.888 66.667 0.00 0.00 38.05 5.34
42 43 4.148825 GGCGAGTGGATCTGGCGT 62.149 66.667 0.00 0.00 46.45 5.68
43 44 3.842923 AGGCGAGTGGATCTGGCG 61.843 66.667 0.00 0.00 46.45 5.69
44 45 2.202987 CAGGCGAGTGGATCTGGC 60.203 66.667 0.00 0.00 45.12 4.85
45 46 2.202987 GCAGGCGAGTGGATCTGG 60.203 66.667 0.00 0.00 0.00 3.86
46 47 1.812922 GTGCAGGCGAGTGGATCTG 60.813 63.158 0.00 0.00 0.00 2.90
47 48 2.581354 GTGCAGGCGAGTGGATCT 59.419 61.111 0.00 0.00 0.00 2.75
48 49 2.887568 CGTGCAGGCGAGTGGATC 60.888 66.667 0.00 0.00 0.00 3.36
121 122 4.075793 TCCTCCCCTCCCCACGAG 62.076 72.222 0.00 0.00 38.46 4.18
122 123 4.393778 GTCCTCCCCTCCCCACGA 62.394 72.222 0.00 0.00 0.00 4.35
196 197 4.798682 TTCGCCTCCCCCTCCCTC 62.799 72.222 0.00 0.00 0.00 4.30
197 198 4.806339 CTTCGCCTCCCCCTCCCT 62.806 72.222 0.00 0.00 0.00 4.20
200 201 3.787001 CACCTTCGCCTCCCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
201 202 4.658786 ACACCTTCGCCTCCCCCT 62.659 66.667 0.00 0.00 0.00 4.79
202 203 4.410400 CACACCTTCGCCTCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
203 204 4.410400 CCACACCTTCGCCTCCCC 62.410 72.222 0.00 0.00 0.00 4.81
204 205 4.410400 CCCACACCTTCGCCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
205 206 3.316573 CTCCCACACCTTCGCCTCC 62.317 68.421 0.00 0.00 0.00 4.30
206 207 2.266055 CTCCCACACCTTCGCCTC 59.734 66.667 0.00 0.00 0.00 4.70
207 208 3.322466 CCTCCCACACCTTCGCCT 61.322 66.667 0.00 0.00 0.00 5.52
210 211 4.760047 CCGCCTCCCACACCTTCG 62.760 72.222 0.00 0.00 0.00 3.79
278 279 4.796231 TCTCCTTTCGCTCGCGCC 62.796 66.667 0.00 0.00 39.59 6.53
279 280 2.167861 ATTCTCCTTTCGCTCGCGC 61.168 57.895 0.00 0.00 39.59 6.86
280 281 1.078759 ACATTCTCCTTTCGCTCGCG 61.079 55.000 0.00 0.00 41.35 5.87
281 282 1.855360 CTACATTCTCCTTTCGCTCGC 59.145 52.381 0.00 0.00 0.00 5.03
282 283 2.099263 TCCTACATTCTCCTTTCGCTCG 59.901 50.000 0.00 0.00 0.00 5.03
283 284 3.712187 CTCCTACATTCTCCTTTCGCTC 58.288 50.000 0.00 0.00 0.00 5.03
284 285 2.159028 GCTCCTACATTCTCCTTTCGCT 60.159 50.000 0.00 0.00 0.00 4.93
285 286 2.159028 AGCTCCTACATTCTCCTTTCGC 60.159 50.000 0.00 0.00 0.00 4.70
286 287 3.452474 CAGCTCCTACATTCTCCTTTCG 58.548 50.000 0.00 0.00 0.00 3.46
287 288 3.452627 TCCAGCTCCTACATTCTCCTTTC 59.547 47.826 0.00 0.00 0.00 2.62
288 289 3.454082 CTCCAGCTCCTACATTCTCCTTT 59.546 47.826 0.00 0.00 0.00 3.11
289 290 3.037549 CTCCAGCTCCTACATTCTCCTT 58.962 50.000 0.00 0.00 0.00 3.36
290 291 2.023501 ACTCCAGCTCCTACATTCTCCT 60.024 50.000 0.00 0.00 0.00 3.69
291 292 2.393646 ACTCCAGCTCCTACATTCTCC 58.606 52.381 0.00 0.00 0.00 3.71
292 293 3.319689 GGTACTCCAGCTCCTACATTCTC 59.680 52.174 0.00 0.00 0.00 2.87
293 294 3.301274 GGTACTCCAGCTCCTACATTCT 58.699 50.000 0.00 0.00 0.00 2.40
294 295 3.031736 TGGTACTCCAGCTCCTACATTC 58.968 50.000 0.00 0.00 39.03 2.67
295 296 3.116096 TGGTACTCCAGCTCCTACATT 57.884 47.619 0.00 0.00 39.03 2.71
296 297 2.766828 GTTGGTACTCCAGCTCCTACAT 59.233 50.000 0.00 0.00 45.22 2.29
297 298 2.176889 GTTGGTACTCCAGCTCCTACA 58.823 52.381 0.00 0.00 45.22 2.74
298 299 2.963548 GTTGGTACTCCAGCTCCTAC 57.036 55.000 0.00 0.00 45.22 3.18
304 305 3.629142 ATGGTTAGTTGGTACTCCAGC 57.371 47.619 0.00 0.00 45.22 4.85
305 306 6.479972 TCATATGGTTAGTTGGTACTCCAG 57.520 41.667 2.13 0.00 45.22 3.86
306 307 7.787904 AGTATCATATGGTTAGTTGGTACTCCA 59.212 37.037 2.13 0.00 42.66 3.86
307 308 8.191534 AGTATCATATGGTTAGTTGGTACTCC 57.808 38.462 2.13 0.00 31.98 3.85
309 310 9.832445 CAAAGTATCATATGGTTAGTTGGTACT 57.168 33.333 2.13 0.00 37.56 2.73
310 311 9.609346 ACAAAGTATCATATGGTTAGTTGGTAC 57.391 33.333 2.13 0.00 0.00 3.34
362 363 5.250774 TCCTATGGTCAACTCTAGCCTTTTT 59.749 40.000 0.00 0.00 0.00 1.94
363 364 4.783227 TCCTATGGTCAACTCTAGCCTTTT 59.217 41.667 0.00 0.00 0.00 2.27
364 365 4.362677 TCCTATGGTCAACTCTAGCCTTT 58.637 43.478 0.00 0.00 0.00 3.11
365 366 3.964031 CTCCTATGGTCAACTCTAGCCTT 59.036 47.826 0.00 0.00 0.00 4.35
366 367 3.571590 CTCCTATGGTCAACTCTAGCCT 58.428 50.000 0.00 0.00 0.00 4.58
367 368 2.630580 CCTCCTATGGTCAACTCTAGCC 59.369 54.545 0.00 0.00 0.00 3.93
368 369 3.319689 GTCCTCCTATGGTCAACTCTAGC 59.680 52.174 0.00 0.00 0.00 3.42
369 370 3.566322 CGTCCTCCTATGGTCAACTCTAG 59.434 52.174 0.00 0.00 0.00 2.43
370 371 3.201487 TCGTCCTCCTATGGTCAACTCTA 59.799 47.826 0.00 0.00 0.00 2.43
371 372 2.025226 TCGTCCTCCTATGGTCAACTCT 60.025 50.000 0.00 0.00 0.00 3.24
372 373 2.376109 TCGTCCTCCTATGGTCAACTC 58.624 52.381 0.00 0.00 0.00 3.01
373 374 2.526888 TCGTCCTCCTATGGTCAACT 57.473 50.000 0.00 0.00 0.00 3.16
374 375 4.583489 TCTTATCGTCCTCCTATGGTCAAC 59.417 45.833 0.00 0.00 0.00 3.18
375 376 4.583489 GTCTTATCGTCCTCCTATGGTCAA 59.417 45.833 0.00 0.00 0.00 3.18
376 377 4.141228 AGTCTTATCGTCCTCCTATGGTCA 60.141 45.833 0.00 0.00 0.00 4.02
377 378 4.216687 CAGTCTTATCGTCCTCCTATGGTC 59.783 50.000 0.00 0.00 0.00 4.02
378 379 4.145807 CAGTCTTATCGTCCTCCTATGGT 58.854 47.826 0.00 0.00 0.00 3.55
379 380 3.508012 CCAGTCTTATCGTCCTCCTATGG 59.492 52.174 0.00 0.00 0.00 2.74
380 381 4.145807 ACCAGTCTTATCGTCCTCCTATG 58.854 47.826 0.00 0.00 0.00 2.23
381 382 4.141228 TGACCAGTCTTATCGTCCTCCTAT 60.141 45.833 0.00 0.00 0.00 2.57
382 383 3.201487 TGACCAGTCTTATCGTCCTCCTA 59.799 47.826 0.00 0.00 0.00 2.94
383 384 2.025226 TGACCAGTCTTATCGTCCTCCT 60.025 50.000 0.00 0.00 0.00 3.69
384 385 2.376109 TGACCAGTCTTATCGTCCTCC 58.624 52.381 0.00 0.00 0.00 4.30
385 386 4.822896 ACTATGACCAGTCTTATCGTCCTC 59.177 45.833 0.00 0.00 0.00 3.71
386 387 4.580995 CACTATGACCAGTCTTATCGTCCT 59.419 45.833 0.00 0.00 0.00 3.85
387 388 4.261656 CCACTATGACCAGTCTTATCGTCC 60.262 50.000 0.00 0.00 0.00 4.79
388 389 4.261656 CCCACTATGACCAGTCTTATCGTC 60.262 50.000 0.00 0.00 0.00 4.20
389 390 3.637229 CCCACTATGACCAGTCTTATCGT 59.363 47.826 0.00 0.00 0.00 3.73
390 391 3.889538 TCCCACTATGACCAGTCTTATCG 59.110 47.826 0.00 0.00 0.00 2.92
391 392 4.896482 ACTCCCACTATGACCAGTCTTATC 59.104 45.833 0.00 0.00 0.00 1.75
392 393 4.884961 ACTCCCACTATGACCAGTCTTAT 58.115 43.478 0.00 0.00 0.00 1.73
393 394 4.332683 ACTCCCACTATGACCAGTCTTA 57.667 45.455 0.00 0.00 0.00 2.10
394 395 3.191888 ACTCCCACTATGACCAGTCTT 57.808 47.619 0.00 0.00 0.00 3.01
395 396 2.930109 ACTCCCACTATGACCAGTCT 57.070 50.000 0.00 0.00 0.00 3.24
396 397 4.024670 AGTTACTCCCACTATGACCAGTC 58.975 47.826 0.00 0.00 0.00 3.51
397 398 4.062490 AGTTACTCCCACTATGACCAGT 57.938 45.455 0.00 0.00 0.00 4.00
398 399 6.732896 ATAAGTTACTCCCACTATGACCAG 57.267 41.667 0.00 0.00 0.00 4.00
399 400 8.792830 ATTATAAGTTACTCCCACTATGACCA 57.207 34.615 0.00 0.00 0.00 4.02
457 458 9.922477 CATATGTTACTCCCCACTATAGAGATA 57.078 37.037 6.78 0.00 0.00 1.98
458 459 8.402683 ACATATGTTACTCCCCACTATAGAGAT 58.597 37.037 6.78 0.00 0.00 2.75
459 460 7.670140 CACATATGTTACTCCCCACTATAGAGA 59.330 40.741 5.37 0.00 0.00 3.10
467 468 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
470 471 4.189231 GACACCACACATATGTTACTCCC 58.811 47.826 5.37 0.00 36.72 4.30
471 472 4.827692 TGACACCACACATATGTTACTCC 58.172 43.478 5.37 0.00 36.72 3.85
488 489 6.699575 AATAAAGGGAGTATTGCATGACAC 57.300 37.500 0.00 0.00 0.00 3.67
520 521 9.896645 ATCACACATAACAAGATAAGATGAGTT 57.103 29.630 0.00 0.00 0.00 3.01
527 528 9.988350 GGTTAACATCACACATAACAAGATAAG 57.012 33.333 8.10 0.00 31.46 1.73
536 537 9.454859 TCACATTATGGTTAACATCACACATAA 57.545 29.630 8.10 10.71 41.03 1.90
557 558 8.856153 TGTGGTACAAAATATGTTACTCACAT 57.144 30.769 0.00 0.00 45.51 3.21
567 568 5.824624 AGAGAGGCATGTGGTACAAAATATG 59.175 40.000 0.00 0.00 44.16 1.78
573 574 3.788227 AAAGAGAGGCATGTGGTACAA 57.212 42.857 0.00 0.00 44.16 2.41
606 608 4.082300 ACGCAAAATAGATGATGTGGCAAA 60.082 37.500 0.00 0.00 0.00 3.68
611 613 8.929746 ACATATCTACGCAAAATAGATGATGTG 58.070 33.333 5.05 0.00 39.28 3.21
613 615 8.929746 ACACATATCTACGCAAAATAGATGATG 58.070 33.333 5.05 7.10 39.28 3.07
621 624 6.925610 ACATCACACATATCTACGCAAAAT 57.074 33.333 0.00 0.00 0.00 1.82
635 638 8.766000 AGTAACGTAAATGATAACATCACACA 57.234 30.769 0.00 0.00 43.01 3.72
636 639 8.325997 GGAGTAACGTAAATGATAACATCACAC 58.674 37.037 0.00 0.00 43.01 3.82
638 641 7.493320 TGGGAGTAACGTAAATGATAACATCAC 59.507 37.037 0.00 0.00 43.01 3.06
639 642 7.493320 GTGGGAGTAACGTAAATGATAACATCA 59.507 37.037 0.00 0.00 44.55 3.07
640 643 7.709613 AGTGGGAGTAACGTAAATGATAACATC 59.290 37.037 0.00 0.00 35.50 3.06
641 644 7.494625 CAGTGGGAGTAACGTAAATGATAACAT 59.505 37.037 0.00 0.00 38.50 2.71
643 646 6.815142 ACAGTGGGAGTAACGTAAATGATAAC 59.185 38.462 0.00 0.00 0.00 1.89
645 648 6.334989 CACAGTGGGAGTAACGTAAATGATA 58.665 40.000 0.00 0.00 0.00 2.15
646 649 5.175859 CACAGTGGGAGTAACGTAAATGAT 58.824 41.667 0.00 0.00 0.00 2.45
648 651 3.682858 CCACAGTGGGAGTAACGTAAATG 59.317 47.826 12.40 0.00 32.67 2.32
649 652 3.579586 TCCACAGTGGGAGTAACGTAAAT 59.420 43.478 20.14 0.00 38.32 1.40
650 653 2.964464 TCCACAGTGGGAGTAACGTAAA 59.036 45.455 20.14 0.00 38.32 2.01
651 654 2.596346 TCCACAGTGGGAGTAACGTAA 58.404 47.619 20.14 0.00 38.32 3.18
652 655 2.291209 TCCACAGTGGGAGTAACGTA 57.709 50.000 20.14 0.00 38.32 3.57
654 657 2.758979 ACTATCCACAGTGGGAGTAACG 59.241 50.000 20.14 4.40 41.08 3.18
655 658 4.024670 AGACTATCCACAGTGGGAGTAAC 58.975 47.826 20.14 11.64 41.08 2.50
667 689 3.952967 ACGAGAACCCTTAGACTATCCAC 59.047 47.826 0.00 0.00 0.00 4.02
884 914 9.098355 TGAGCGGTGCATTTATTATTCTATATC 57.902 33.333 0.00 0.00 0.00 1.63
906 936 8.019669 CACAGGATAATACTAATGCAAATGAGC 58.980 37.037 0.00 0.00 0.00 4.26
922 952 9.853177 CTTTTATAGAACTTCCCACAGGATAAT 57.147 33.333 0.00 0.00 43.54 1.28
930 960 7.571025 TGGTATCCTTTTATAGAACTTCCCAC 58.429 38.462 0.00 0.00 0.00 4.61
931 961 7.758820 TGGTATCCTTTTATAGAACTTCCCA 57.241 36.000 0.00 0.00 0.00 4.37
962 997 1.005557 GTTCTGCTGCGACATCGATTC 60.006 52.381 5.26 0.00 43.02 2.52
1044 1106 1.954146 GTTGAGAAGCGCCACGACA 60.954 57.895 2.29 2.18 0.00 4.35
1123 1188 1.433837 AACAAGTTGCCGGTGTCGAC 61.434 55.000 9.11 9.11 39.00 4.20
1298 1380 5.298989 ACGTATGCACCCCTCATTTTATA 57.701 39.130 0.00 0.00 0.00 0.98
1299 1381 4.164843 ACGTATGCACCCCTCATTTTAT 57.835 40.909 0.00 0.00 0.00 1.40
1300 1382 3.637911 ACGTATGCACCCCTCATTTTA 57.362 42.857 0.00 0.00 0.00 1.52
1301 1383 2.507407 ACGTATGCACCCCTCATTTT 57.493 45.000 0.00 0.00 0.00 1.82
1318 1400 4.781026 CGCTGAAAACATACACACATAACG 59.219 41.667 0.00 0.00 0.00 3.18
1628 1751 2.797156 CCTGTGTCAAGACGAGAAACAG 59.203 50.000 11.45 11.45 46.32 3.16
1798 1928 3.165606 GGTTGATCACCTCCTGCAG 57.834 57.895 6.78 6.78 43.29 4.41
2265 2400 0.250234 ACTAGCAAAGATGGCGCAGA 59.750 50.000 10.83 0.00 36.08 4.26
2308 2443 7.064966 CACTACAGCTACATGAATCAATCACAA 59.935 37.037 0.00 0.00 41.93 3.33
2531 3943 5.530543 CCCTGGCAATTTTCTGCTTTTAAAA 59.469 36.000 0.00 0.00 42.25 1.52
2716 4128 7.496591 TCTTTTTACCTCTTTCTTTTGCTACGA 59.503 33.333 0.00 0.00 0.00 3.43
2752 4165 7.069208 TGACATGGCAAATTTACCTATAATGCA 59.931 33.333 0.00 0.00 34.14 3.96
2848 4261 4.690280 CCATTATTGTTTTTGCCAGGACAC 59.310 41.667 0.00 0.00 0.00 3.67
2880 4310 7.876068 ACATGGCAAATTCATATTCATTCATCC 59.124 33.333 0.00 0.00 0.00 3.51
2930 4360 9.814899 TCAGAAGATAGCAAATTCAAAAACAAA 57.185 25.926 0.00 0.00 0.00 2.83
2933 4363 8.919661 CCTTCAGAAGATAGCAAATTCAAAAAC 58.080 33.333 12.14 0.00 0.00 2.43
3044 4475 1.295792 TTGTGCTCCACGTCAGTTTC 58.704 50.000 0.00 0.00 37.14 2.78
3045 4476 1.745232 TTTGTGCTCCACGTCAGTTT 58.255 45.000 0.00 0.00 37.14 2.66
3224 4655 8.504812 ACTTTTTATTGACATGGCAAACTTTT 57.495 26.923 19.96 3.50 0.00 2.27
3250 4681 6.532657 CCTACTTTCTAGCATGGCAAAATTTG 59.467 38.462 0.57 0.57 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.