Multiple sequence alignment - TraesCS6B01G164600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G164600 chr6B 100.000 2690 0 0 1 2690 171729460 171726771 0.000000e+00 4968.0
1 TraesCS6B01G164600 chr6B 91.929 731 59 0 986 1716 149055170 149055900 0.000000e+00 1024.0
2 TraesCS6B01G164600 chr6B 78.743 334 38 22 5 315 171806691 171806368 2.730000e-45 193.0
3 TraesCS6B01G164600 chr6B 86.765 136 8 6 188 315 171769855 171769722 2.790000e-30 143.0
4 TraesCS6B01G164600 chr6B 93.023 86 6 0 798 883 171728623 171728538 2.810000e-25 126.0
5 TraesCS6B01G164600 chr6B 93.023 86 6 0 838 923 171728663 171728578 2.810000e-25 126.0
6 TraesCS6B01G164600 chr6D 92.833 879 43 15 1 867 89330769 89329899 0.000000e+00 1256.0
7 TraesCS6B01G164600 chr6D 90.632 854 35 22 1392 2213 89329359 89328519 0.000000e+00 1092.0
8 TraesCS6B01G164600 chr6D 88.392 715 83 0 1001 1715 75372542 75373256 0.000000e+00 861.0
9 TraesCS6B01G164600 chr6D 88.824 689 77 0 986 1674 75372299 75372987 0.000000e+00 846.0
10 TraesCS6B01G164600 chr6D 88.182 330 17 10 2364 2690 89328244 89327934 9.090000e-100 374.0
11 TraesCS6B01G164600 chr6D 86.196 326 18 8 878 1202 89366394 89366095 7.180000e-86 327.0
12 TraesCS6B01G164600 chr6D 78.589 397 33 33 3 351 89357323 89356931 5.830000e-52 215.0
13 TraesCS6B01G164600 chr6D 80.303 132 15 8 222 351 89367086 89366964 3.690000e-14 89.8
14 TraesCS6B01G164600 chr6D 92.500 40 2 1 234 273 89367046 89367008 3.740000e-04 56.5
15 TraesCS6B01G164600 chr2D 91.896 728 57 1 986 1713 520583538 520582813 0.000000e+00 1016.0
16 TraesCS6B01G164600 chr6A 91.594 690 41 11 1229 1906 107692721 107692037 0.000000e+00 937.0
17 TraesCS6B01G164600 chr6A 91.748 618 25 8 838 1455 107692858 107692267 0.000000e+00 835.0
18 TraesCS6B01G164600 chr6A 95.096 469 23 0 987 1455 107701254 107700786 0.000000e+00 739.0
19 TraesCS6B01G164600 chr6A 87.500 360 28 8 1 357 107693776 107693431 1.500000e-107 399.0
20 TraesCS6B01G164600 chr6A 87.829 304 7 10 1939 2213 107692038 107691736 2.000000e-86 329.0
21 TraesCS6B01G164600 chr6A 82.524 412 30 12 112 508 107702019 107701635 9.290000e-85 324.0
22 TraesCS6B01G164600 chr6A 87.395 238 20 7 500 729 107693097 107692862 5.710000e-67 265.0
23 TraesCS6B01G164600 chr6A 80.966 352 27 16 500 843 107701611 107701292 2.680000e-60 243.0
24 TraesCS6B01G164600 chr6A 91.549 142 10 1 2444 2583 107690937 107690796 7.600000e-46 195.0
25 TraesCS6B01G164600 chr6A 93.478 92 6 0 792 883 107692864 107692773 1.300000e-28 137.0
26 TraesCS6B01G164600 chr6A 100.000 40 0 0 2337 2376 107690991 107690952 1.030000e-09 75.0
27 TraesCS6B01G164600 chr7D 90.145 690 68 0 994 1683 562149193 562148504 0.000000e+00 898.0
28 TraesCS6B01G164600 chr7D 89.209 695 75 0 1001 1695 562148958 562148264 0.000000e+00 869.0
29 TraesCS6B01G164600 chrUn 89.586 701 73 0 994 1694 20705497 20706197 0.000000e+00 891.0
30 TraesCS6B01G164600 chr7A 90.059 674 67 0 1010 1683 647307230 647306557 0.000000e+00 874.0
31 TraesCS6B01G164600 chr7A 88.666 697 79 0 994 1690 647917457 647916761 0.000000e+00 850.0
32 TraesCS6B01G164600 chr7A 79.487 273 33 15 5 262 728274732 728274996 3.560000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G164600 chr6B 171726771 171729460 2689 True 1740.000000 4968 95.348667 1 2690 3 chr6B.!!$R3 2689
1 TraesCS6B01G164600 chr6B 149055170 149055900 730 False 1024.000000 1024 91.929000 986 1716 1 chr6B.!!$F1 730
2 TraesCS6B01G164600 chr6D 89327934 89330769 2835 True 907.333333 1256 90.549000 1 2690 3 chr6D.!!$R2 2689
3 TraesCS6B01G164600 chr6D 75372299 75373256 957 False 853.500000 861 88.608000 986 1715 2 chr6D.!!$F1 729
4 TraesCS6B01G164600 chr2D 520582813 520583538 725 True 1016.000000 1016 91.896000 986 1713 1 chr2D.!!$R1 727
5 TraesCS6B01G164600 chr6A 107700786 107702019 1233 True 435.333333 739 86.195333 112 1455 3 chr6A.!!$R2 1343
6 TraesCS6B01G164600 chr6A 107690796 107693776 2980 True 396.500000 937 91.386625 1 2583 8 chr6A.!!$R1 2582
7 TraesCS6B01G164600 chr7D 562148264 562149193 929 True 883.500000 898 89.677000 994 1695 2 chr7D.!!$R1 701
8 TraesCS6B01G164600 chrUn 20705497 20706197 700 False 891.000000 891 89.586000 994 1694 1 chrUn.!!$F1 700
9 TraesCS6B01G164600 chr7A 647306557 647307230 673 True 874.000000 874 90.059000 1010 1683 1 chr7A.!!$R1 673
10 TraesCS6B01G164600 chr7A 647916761 647917457 696 True 850.000000 850 88.666000 994 1690 1 chr7A.!!$R2 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 965 1.1282 ACATACGCTTGGCCCTATGA 58.872 50.0 0.0 0.0 0.0 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 3061 0.039074 GCAGCAGACACAGTACGACT 60.039 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 9.011407 CCATATAAAATTATCTCTAGACGCGTC 57.989 37.037 31.30 31.30 0.00 5.19
283 293 2.149578 CTGTTTGAGTCTCTGGCTTGG 58.850 52.381 0.65 0.00 0.00 3.61
309 319 8.808529 GTGTATAAGCTTATATATCTGCGTTGG 58.191 37.037 25.15 0.00 0.00 3.77
335 347 9.989869 GTAGATTGGTTAAGCTTTAGTGAATTC 57.010 33.333 3.20 0.00 33.89 2.17
347 359 7.065923 AGCTTTAGTGAATTCGTAGGGATTTTC 59.934 37.037 0.04 0.00 0.00 2.29
398 569 5.696724 GGTTAATATCCGTCTTCCACATGAG 59.303 44.000 0.00 0.00 0.00 2.90
516 720 3.390639 AGTAGCTGCCTGATCTATTGCTT 59.609 43.478 0.00 0.00 0.00 3.91
557 761 3.305720 ACCAAGATCGTCCTAATAGGCA 58.694 45.455 0.34 0.00 34.61 4.75
571 775 8.311395 TCCTAATAGGCATAGGATTGTAGATG 57.689 38.462 0.34 0.00 43.10 2.90
572 776 7.901322 TCCTAATAGGCATAGGATTGTAGATGT 59.099 37.037 0.34 0.00 43.10 3.06
603 809 4.401022 TGAAGCTTGTGGAATCATTGAGT 58.599 39.130 2.10 0.00 0.00 3.41
608 814 4.156556 GCTTGTGGAATCATTGAGTTAGCA 59.843 41.667 0.00 0.00 0.00 3.49
644 850 4.761235 AGTGTCAGATGTGCTTGATTTG 57.239 40.909 0.00 0.00 0.00 2.32
669 881 9.381038 TGTTACCCTGAAGCTATCTTAGATAAT 57.619 33.333 3.38 0.00 31.48 1.28
670 882 9.646427 GTTACCCTGAAGCTATCTTAGATAATG 57.354 37.037 3.38 0.00 31.48 1.90
685 898 5.301835 AGATAATGTAAGCATGTCTGGCT 57.698 39.130 0.00 0.00 45.15 4.75
706 919 6.774170 TGGCTGCTATGTTGAATCATTAGATT 59.226 34.615 0.00 0.00 46.85 2.40
744 958 3.546002 TTTGTGTTACATACGCTTGGC 57.454 42.857 0.00 0.00 38.12 4.52
751 965 1.128200 ACATACGCTTGGCCCTATGA 58.872 50.000 0.00 0.00 0.00 2.15
814 1028 3.863142 AGAAGCTTGTCCATGCATTTC 57.137 42.857 2.10 0.00 34.33 2.17
823 1037 4.370049 TGTCCATGCATTTCTGTTTGTTG 58.630 39.130 0.00 0.00 0.00 3.33
831 1045 5.049167 GCATTTCTGTTTGTTGTTCCATCA 58.951 37.500 0.00 0.00 0.00 3.07
832 1046 5.697633 GCATTTCTGTTTGTTGTTCCATCAT 59.302 36.000 0.00 0.00 0.00 2.45
833 1047 6.203338 GCATTTCTGTTTGTTGTTCCATCATT 59.797 34.615 0.00 0.00 0.00 2.57
834 1048 7.569297 CATTTCTGTTTGTTGTTCCATCATTG 58.431 34.615 0.00 0.00 0.00 2.82
835 1049 5.850557 TCTGTTTGTTGTTCCATCATTGT 57.149 34.783 0.00 0.00 0.00 2.71
836 1050 5.590145 TCTGTTTGTTGTTCCATCATTGTG 58.410 37.500 0.00 0.00 0.00 3.33
837 1051 5.359292 TCTGTTTGTTGTTCCATCATTGTGA 59.641 36.000 0.00 0.00 0.00 3.58
838 1052 5.590145 TGTTTGTTGTTCCATCATTGTGAG 58.410 37.500 0.00 0.00 0.00 3.51
839 1053 3.921119 TGTTGTTCCATCATTGTGAGC 57.079 42.857 0.00 0.00 0.00 4.26
840 1054 3.489355 TGTTGTTCCATCATTGTGAGCT 58.511 40.909 0.00 0.00 0.00 4.09
841 1055 3.890756 TGTTGTTCCATCATTGTGAGCTT 59.109 39.130 0.00 0.00 0.00 3.74
842 1056 4.232221 GTTGTTCCATCATTGTGAGCTTG 58.768 43.478 0.00 0.00 0.00 4.01
843 1057 3.489355 TGTTCCATCATTGTGAGCTTGT 58.511 40.909 0.00 0.00 0.00 3.16
844 1058 3.503363 TGTTCCATCATTGTGAGCTTGTC 59.497 43.478 0.00 0.00 0.00 3.18
845 1059 2.715046 TCCATCATTGTGAGCTTGTCC 58.285 47.619 0.00 0.00 0.00 4.02
846 1060 2.040145 TCCATCATTGTGAGCTTGTCCA 59.960 45.455 0.00 0.00 0.00 4.02
847 1061 3.021695 CCATCATTGTGAGCTTGTCCAT 58.978 45.455 0.00 0.00 0.00 3.41
848 1062 3.181490 CCATCATTGTGAGCTTGTCCATG 60.181 47.826 0.00 0.00 0.00 3.66
849 1063 1.814394 TCATTGTGAGCTTGTCCATGC 59.186 47.619 0.00 0.00 0.00 4.06
850 1064 1.542472 CATTGTGAGCTTGTCCATGCA 59.458 47.619 7.75 0.00 34.33 3.96
851 1065 1.913778 TTGTGAGCTTGTCCATGCAT 58.086 45.000 0.00 0.00 34.33 3.96
852 1066 1.913778 TGTGAGCTTGTCCATGCATT 58.086 45.000 0.00 0.00 34.33 3.56
853 1067 2.241160 TGTGAGCTTGTCCATGCATTT 58.759 42.857 0.00 0.00 34.33 2.32
854 1068 2.029739 TGTGAGCTTGTCCATGCATTTG 60.030 45.455 0.00 0.00 34.33 2.32
855 1069 2.029649 GTGAGCTTGTCCATGCATTTGT 60.030 45.455 0.00 0.00 34.33 2.83
856 1070 2.029739 TGAGCTTGTCCATGCATTTGTG 60.030 45.455 0.00 0.00 34.33 3.33
857 1071 1.965643 AGCTTGTCCATGCATTTGTGT 59.034 42.857 0.00 0.00 34.33 3.72
858 1072 2.366266 AGCTTGTCCATGCATTTGTGTT 59.634 40.909 0.00 0.00 34.33 3.32
859 1073 3.132925 GCTTGTCCATGCATTTGTGTTT 58.867 40.909 0.00 0.00 0.00 2.83
860 1074 3.184986 GCTTGTCCATGCATTTGTGTTTC 59.815 43.478 0.00 0.00 0.00 2.78
861 1075 4.624015 CTTGTCCATGCATTTGTGTTTCT 58.376 39.130 0.00 0.00 0.00 2.52
862 1076 4.669206 TGTCCATGCATTTGTGTTTCTT 57.331 36.364 0.00 0.00 0.00 2.52
863 1077 4.370049 TGTCCATGCATTTGTGTTTCTTG 58.630 39.130 0.00 0.00 0.00 3.02
864 1078 4.141981 TGTCCATGCATTTGTGTTTCTTGT 60.142 37.500 0.00 0.00 0.00 3.16
865 1079 4.810491 GTCCATGCATTTGTGTTTCTTGTT 59.190 37.500 0.00 0.00 0.00 2.83
866 1080 5.049167 TCCATGCATTTGTGTTTCTTGTTC 58.951 37.500 0.00 0.00 0.00 3.18
867 1081 4.211794 CCATGCATTTGTGTTTCTTGTTCC 59.788 41.667 0.00 0.00 0.00 3.62
868 1082 4.462508 TGCATTTGTGTTTCTTGTTCCA 57.537 36.364 0.00 0.00 0.00 3.53
869 1083 5.021033 TGCATTTGTGTTTCTTGTTCCAT 57.979 34.783 0.00 0.00 0.00 3.41
870 1084 5.049167 TGCATTTGTGTTTCTTGTTCCATC 58.951 37.500 0.00 0.00 0.00 3.51
951 1165 6.823689 GGTCTGCTTCTTTATTCTTACCATCA 59.176 38.462 0.00 0.00 0.00 3.07
952 1166 7.201652 GGTCTGCTTCTTTATTCTTACCATCAC 60.202 40.741 0.00 0.00 0.00 3.06
953 1167 6.823689 TCTGCTTCTTTATTCTTACCATCACC 59.176 38.462 0.00 0.00 0.00 4.02
954 1168 5.885912 TGCTTCTTTATTCTTACCATCACCC 59.114 40.000 0.00 0.00 0.00 4.61
955 1169 6.122964 GCTTCTTTATTCTTACCATCACCCT 58.877 40.000 0.00 0.00 0.00 4.34
956 1170 6.603599 GCTTCTTTATTCTTACCATCACCCTT 59.396 38.462 0.00 0.00 0.00 3.95
957 1171 7.415653 GCTTCTTTATTCTTACCATCACCCTTG 60.416 40.741 0.00 0.00 0.00 3.61
958 1172 7.265599 TCTTTATTCTTACCATCACCCTTGA 57.734 36.000 0.00 0.00 35.73 3.02
959 1173 7.338710 TCTTTATTCTTACCATCACCCTTGAG 58.661 38.462 0.00 0.00 34.35 3.02
960 1174 4.510167 ATTCTTACCATCACCCTTGAGG 57.490 45.455 0.00 0.00 43.78 3.86
976 1190 7.767250 CCCTTGAGGTTCTTCTTTATTTCTT 57.233 36.000 0.00 0.00 0.00 2.52
977 1191 7.597386 CCCTTGAGGTTCTTCTTTATTTCTTG 58.403 38.462 0.00 0.00 0.00 3.02
978 1192 7.231519 CCCTTGAGGTTCTTCTTTATTTCTTGT 59.768 37.037 0.00 0.00 0.00 3.16
979 1193 8.293157 CCTTGAGGTTCTTCTTTATTTCTTGTC 58.707 37.037 0.00 0.00 0.00 3.18
980 1194 7.745620 TGAGGTTCTTCTTTATTTCTTGTCC 57.254 36.000 0.00 0.00 0.00 4.02
981 1195 7.287061 TGAGGTTCTTCTTTATTTCTTGTCCA 58.713 34.615 0.00 0.00 0.00 4.02
1218 2118 1.669115 CCACCTTGTCCTGCGTCTG 60.669 63.158 0.00 0.00 0.00 3.51
1219 2119 2.031163 ACCTTGTCCTGCGTCTGC 59.969 61.111 0.00 0.00 43.20 4.26
1230 2130 3.792047 CGTCTGCGTGGTGGCATG 61.792 66.667 0.00 0.00 42.99 4.06
1231 2131 4.107051 GTCTGCGTGGTGGCATGC 62.107 66.667 9.90 9.90 42.99 4.06
1232 2132 4.639906 TCTGCGTGGTGGCATGCA 62.640 61.111 21.36 2.54 42.99 3.96
1234 2134 4.639906 TGCGTGGTGGCATGCAGA 62.640 61.111 21.36 1.62 41.59 4.26
1235 2135 3.136123 GCGTGGTGGCATGCAGAT 61.136 61.111 21.36 0.00 37.08 2.90
1236 2136 1.819208 GCGTGGTGGCATGCAGATA 60.819 57.895 21.36 0.00 37.08 1.98
1237 2137 1.168407 GCGTGGTGGCATGCAGATAT 61.168 55.000 21.36 0.00 37.08 1.63
1238 2138 1.311859 CGTGGTGGCATGCAGATATT 58.688 50.000 21.36 0.00 0.00 1.28
1239 2139 1.265095 CGTGGTGGCATGCAGATATTC 59.735 52.381 21.36 0.00 0.00 1.75
1240 2140 1.265095 GTGGTGGCATGCAGATATTCG 59.735 52.381 21.36 0.00 0.00 3.34
1241 2141 1.134128 TGGTGGCATGCAGATATTCGT 60.134 47.619 21.36 0.00 0.00 3.85
1242 2142 1.265095 GGTGGCATGCAGATATTCGTG 59.735 52.381 21.36 0.00 0.00 4.35
1243 2143 2.212652 GTGGCATGCAGATATTCGTGA 58.787 47.619 21.36 0.00 0.00 4.35
1244 2144 2.613595 GTGGCATGCAGATATTCGTGAA 59.386 45.455 21.36 0.00 0.00 3.18
1245 2145 2.874086 TGGCATGCAGATATTCGTGAAG 59.126 45.455 21.36 0.00 0.00 3.02
1246 2146 3.133691 GGCATGCAGATATTCGTGAAGA 58.866 45.455 21.36 0.00 0.00 2.87
1247 2147 3.059325 GGCATGCAGATATTCGTGAAGAC 60.059 47.826 21.36 0.00 0.00 3.01
1248 2148 3.059325 GCATGCAGATATTCGTGAAGACC 60.059 47.826 14.21 0.00 0.00 3.85
1249 2149 3.179443 TGCAGATATTCGTGAAGACCC 57.821 47.619 0.00 0.00 0.00 4.46
1250 2150 2.766263 TGCAGATATTCGTGAAGACCCT 59.234 45.455 0.00 0.00 0.00 4.34
1251 2151 3.181475 TGCAGATATTCGTGAAGACCCTC 60.181 47.826 0.00 0.00 0.00 4.30
1252 2152 3.181475 GCAGATATTCGTGAAGACCCTCA 60.181 47.826 0.00 0.00 0.00 3.86
1253 2153 4.363999 CAGATATTCGTGAAGACCCTCAC 58.636 47.826 0.00 0.00 41.98 3.51
1254 2154 4.098654 CAGATATTCGTGAAGACCCTCACT 59.901 45.833 2.57 0.00 43.01 3.41
1255 2155 2.751166 ATTCGTGAAGACCCTCACTG 57.249 50.000 2.57 0.00 43.01 3.66
1256 2156 0.679505 TTCGTGAAGACCCTCACTGG 59.320 55.000 2.57 0.00 43.01 4.00
1257 2157 1.374758 CGTGAAGACCCTCACTGGC 60.375 63.158 2.57 0.00 43.01 4.85
1258 2158 1.754745 GTGAAGACCCTCACTGGCA 59.245 57.895 0.00 0.00 42.11 4.92
1259 2159 0.108585 GTGAAGACCCTCACTGGCAA 59.891 55.000 0.00 0.00 42.11 4.52
1260 2160 0.397941 TGAAGACCCTCACTGGCAAG 59.602 55.000 0.00 0.00 0.00 4.01
1261 2161 0.687354 GAAGACCCTCACTGGCAAGA 59.313 55.000 0.00 0.00 0.00 3.02
1262 2162 0.398318 AAGACCCTCACTGGCAAGAC 59.602 55.000 0.00 0.00 0.00 3.01
1263 2163 1.003233 GACCCTCACTGGCAAGACC 60.003 63.158 0.00 0.00 39.84 3.85
1271 2171 3.920817 TGGCAAGACCATCACCCT 58.079 55.556 0.00 0.00 46.36 4.34
1272 2172 1.379916 TGGCAAGACCATCACCCTG 59.620 57.895 0.00 0.00 46.36 4.45
1273 2173 1.379044 GGCAAGACCATCACCCTGG 60.379 63.158 0.00 0.00 42.35 4.45
1274 2174 1.685224 GCAAGACCATCACCCTGGA 59.315 57.895 0.00 0.00 39.73 3.86
1275 2175 0.393537 GCAAGACCATCACCCTGGAG 60.394 60.000 0.00 0.00 39.73 3.86
1276 2176 0.254178 CAAGACCATCACCCTGGAGG 59.746 60.000 0.00 0.00 39.73 4.30
1285 2185 2.043450 CCCTGGAGGTCGAGAGCT 60.043 66.667 4.32 4.32 42.58 4.09
1294 2194 2.033602 TCGAGAGCTCCGACACCA 59.966 61.111 19.22 2.09 0.00 4.17
1295 2195 1.378646 TCGAGAGCTCCGACACCAT 60.379 57.895 19.22 0.00 0.00 3.55
1296 2196 0.965866 TCGAGAGCTCCGACACCATT 60.966 55.000 19.22 0.00 0.00 3.16
1297 2197 0.803768 CGAGAGCTCCGACACCATTG 60.804 60.000 10.93 0.00 0.00 2.82
1298 2198 0.532573 GAGAGCTCCGACACCATTGA 59.467 55.000 10.93 0.00 0.00 2.57
1299 2199 0.247736 AGAGCTCCGACACCATTGAC 59.752 55.000 10.93 0.00 0.00 3.18
1300 2200 0.037326 GAGCTCCGACACCATTGACA 60.037 55.000 0.87 0.00 0.00 3.58
1301 2201 0.396435 AGCTCCGACACCATTGACAA 59.604 50.000 0.00 0.00 0.00 3.18
1302 2202 0.517316 GCTCCGACACCATTGACAAC 59.483 55.000 0.00 0.00 0.00 3.32
1303 2203 0.790207 CTCCGACACCATTGACAACG 59.210 55.000 0.00 0.00 0.00 4.10
1304 2204 0.105224 TCCGACACCATTGACAACGT 59.895 50.000 0.00 0.00 0.00 3.99
1305 2205 0.511221 CCGACACCATTGACAACGTC 59.489 55.000 0.00 0.00 0.00 4.34
1306 2206 1.213491 CGACACCATTGACAACGTCA 58.787 50.000 0.00 0.00 41.09 4.35
1312 2212 4.966123 TTGACAACGTCAAGGCCA 57.034 50.000 5.01 0.00 45.88 5.36
1313 2213 3.176728 TTGACAACGTCAAGGCCAA 57.823 47.368 5.01 0.00 45.88 4.52
1314 2214 1.021202 TTGACAACGTCAAGGCCAAG 58.979 50.000 5.01 0.00 45.88 3.61
1315 2215 0.179234 TGACAACGTCAAGGCCAAGA 59.821 50.000 5.01 0.00 39.78 3.02
1316 2216 1.202758 TGACAACGTCAAGGCCAAGAT 60.203 47.619 5.01 0.00 39.78 2.40
1317 2217 1.464997 GACAACGTCAAGGCCAAGATC 59.535 52.381 5.01 0.00 32.09 2.75
1318 2218 0.804989 CAACGTCAAGGCCAAGATCC 59.195 55.000 5.01 0.00 0.00 3.36
1319 2219 0.400213 AACGTCAAGGCCAAGATCCA 59.600 50.000 5.01 0.00 0.00 3.41
1320 2220 0.036010 ACGTCAAGGCCAAGATCCAG 60.036 55.000 5.01 0.00 0.00 3.86
1321 2221 0.745845 CGTCAAGGCCAAGATCCAGG 60.746 60.000 5.01 0.00 0.00 4.45
1322 2222 0.620556 GTCAAGGCCAAGATCCAGGA 59.379 55.000 5.01 0.00 0.00 3.86
1323 2223 0.620556 TCAAGGCCAAGATCCAGGAC 59.379 55.000 5.01 1.96 0.00 3.85
1324 2224 0.329261 CAAGGCCAAGATCCAGGACA 59.671 55.000 5.01 0.00 34.45 4.02
1325 2225 1.075601 AAGGCCAAGATCCAGGACAA 58.924 50.000 5.01 0.00 34.45 3.18
1326 2226 0.622665 AGGCCAAGATCCAGGACAAG 59.377 55.000 5.01 0.00 34.45 3.16
1327 2227 0.394899 GGCCAAGATCCAGGACAAGG 60.395 60.000 0.00 0.00 31.39 3.61
1328 2228 0.620556 GCCAAGATCCAGGACAAGGA 59.379 55.000 5.26 0.00 39.97 3.36
1329 2229 1.407989 GCCAAGATCCAGGACAAGGAG 60.408 57.143 5.26 0.00 38.83 3.69
1330 2230 1.211457 CCAAGATCCAGGACAAGGAGG 59.789 57.143 0.00 0.00 38.83 4.30
1331 2231 1.211457 CAAGATCCAGGACAAGGAGGG 59.789 57.143 0.00 0.00 38.83 4.30
1332 2232 0.985490 AGATCCAGGACAAGGAGGGC 60.985 60.000 0.00 0.00 38.83 5.19
1333 2233 1.229951 ATCCAGGACAAGGAGGGCA 60.230 57.895 0.00 0.00 38.83 5.36
1334 2234 0.625683 ATCCAGGACAAGGAGGGCAT 60.626 55.000 0.00 0.00 38.83 4.40
1335 2235 0.846427 TCCAGGACAAGGAGGGCATT 60.846 55.000 0.00 0.00 0.00 3.56
1336 2236 0.394899 CCAGGACAAGGAGGGCATTC 60.395 60.000 0.00 0.00 0.00 2.67
1337 2237 0.394899 CAGGACAAGGAGGGCATTCC 60.395 60.000 0.00 0.00 37.52 3.01
1347 2247 4.506255 GGCATTCCCCCGGACCAG 62.506 72.222 0.73 0.00 0.00 4.00
1349 2249 3.727258 CATTCCCCCGGACCAGCA 61.727 66.667 0.73 0.00 0.00 4.41
1350 2250 3.411517 ATTCCCCCGGACCAGCAG 61.412 66.667 0.73 0.00 0.00 4.24
1357 2257 4.451150 CGGACCAGCAGCGCCTTA 62.451 66.667 2.29 0.00 0.00 2.69
1358 2258 2.190578 GGACCAGCAGCGCCTTAT 59.809 61.111 2.29 0.00 0.00 1.73
1359 2259 1.889573 GGACCAGCAGCGCCTTATC 60.890 63.158 2.29 0.00 0.00 1.75
1360 2260 1.144936 GACCAGCAGCGCCTTATCT 59.855 57.895 2.29 0.00 0.00 1.98
1361 2261 0.462759 GACCAGCAGCGCCTTATCTT 60.463 55.000 2.29 0.00 0.00 2.40
1362 2262 0.035056 ACCAGCAGCGCCTTATCTTT 60.035 50.000 2.29 0.00 0.00 2.52
1363 2263 0.379669 CCAGCAGCGCCTTATCTTTG 59.620 55.000 2.29 0.00 0.00 2.77
1364 2264 0.248377 CAGCAGCGCCTTATCTTTGC 60.248 55.000 2.29 4.54 0.00 3.68
1365 2265 0.393537 AGCAGCGCCTTATCTTTGCT 60.394 50.000 10.33 10.33 37.09 3.91
1366 2266 3.911989 CAGCGCCTTATCTTTGCTG 57.088 52.632 2.29 0.00 45.88 4.41
1367 2267 0.379669 CAGCGCCTTATCTTTGCTGG 59.620 55.000 2.29 0.00 46.97 4.85
1368 2268 1.064783 GCGCCTTATCTTTGCTGGC 59.935 57.895 0.00 0.00 40.14 4.85
1369 2269 1.656818 GCGCCTTATCTTTGCTGGCA 61.657 55.000 0.00 0.00 43.38 4.92
1370 2270 0.810648 CGCCTTATCTTTGCTGGCAA 59.189 50.000 3.72 3.72 43.38 4.52
1371 2271 1.202222 CGCCTTATCTTTGCTGGCAAG 60.202 52.381 8.04 3.85 43.38 4.01
1381 2281 2.750637 CTGGCAAGCAGCTGGAGG 60.751 66.667 17.12 0.00 44.79 4.30
1382 2282 3.251509 TGGCAAGCAGCTGGAGGA 61.252 61.111 17.12 0.00 44.79 3.71
1383 2283 2.274760 GGCAAGCAGCTGGAGGAT 59.725 61.111 17.12 0.00 44.79 3.24
1384 2284 2.119655 GGCAAGCAGCTGGAGGATG 61.120 63.158 17.12 0.00 44.79 3.51
1385 2285 2.119655 GCAAGCAGCTGGAGGATGG 61.120 63.158 17.12 0.00 41.15 3.51
1386 2286 1.302285 CAAGCAGCTGGAGGATGGT 59.698 57.895 17.12 0.00 44.28 3.55
1387 2287 0.747283 CAAGCAGCTGGAGGATGGTC 60.747 60.000 17.12 0.00 41.41 4.02
1388 2288 2.202987 GCAGCTGGAGGATGGTCG 60.203 66.667 17.12 0.00 0.00 4.79
1389 2289 2.202987 CAGCTGGAGGATGGTCGC 60.203 66.667 5.57 0.00 0.00 5.19
1390 2290 2.685017 AGCTGGAGGATGGTCGCA 60.685 61.111 0.00 0.00 0.00 5.10
1391 2291 2.512515 GCTGGAGGATGGTCGCAC 60.513 66.667 0.00 0.00 0.00 5.34
1392 2292 2.187946 CTGGAGGATGGTCGCACC 59.812 66.667 0.00 0.00 39.22 5.01
1393 2293 3.391665 CTGGAGGATGGTCGCACCC 62.392 68.421 3.33 0.00 37.50 4.61
1394 2294 3.083997 GGAGGATGGTCGCACCCT 61.084 66.667 3.33 0.00 37.50 4.34
1395 2295 2.187946 GAGGATGGTCGCACCCTG 59.812 66.667 3.33 0.00 37.50 4.45
1396 2296 3.391665 GAGGATGGTCGCACCCTGG 62.392 68.421 3.33 0.00 37.50 4.45
1404 2304 4.814294 CGCACCCTGGCCGACTAC 62.814 72.222 0.00 0.00 0.00 2.73
1405 2305 3.702048 GCACCCTGGCCGACTACA 61.702 66.667 0.00 0.00 0.00 2.74
1406 2306 3.065306 CACCCTGGCCGACTACAA 58.935 61.111 0.00 0.00 0.00 2.41
1407 2307 1.375523 CACCCTGGCCGACTACAAC 60.376 63.158 0.00 0.00 0.00 3.32
1408 2308 1.839747 ACCCTGGCCGACTACAACA 60.840 57.895 0.00 0.00 0.00 3.33
1409 2309 1.198759 ACCCTGGCCGACTACAACAT 61.199 55.000 0.00 0.00 0.00 2.71
1410 2310 0.462047 CCCTGGCCGACTACAACATC 60.462 60.000 0.00 0.00 0.00 3.06
1411 2311 0.462047 CCTGGCCGACTACAACATCC 60.462 60.000 0.00 0.00 0.00 3.51
1412 2312 0.249120 CTGGCCGACTACAACATCCA 59.751 55.000 0.00 0.00 0.00 3.41
1413 2313 0.687920 TGGCCGACTACAACATCCAA 59.312 50.000 0.00 0.00 0.00 3.53
1414 2314 1.072489 TGGCCGACTACAACATCCAAA 59.928 47.619 0.00 0.00 0.00 3.28
1415 2315 2.156098 GGCCGACTACAACATCCAAAA 58.844 47.619 0.00 0.00 0.00 2.44
1416 2316 2.161609 GGCCGACTACAACATCCAAAAG 59.838 50.000 0.00 0.00 0.00 2.27
1417 2317 2.161609 GCCGACTACAACATCCAAAAGG 59.838 50.000 0.00 0.00 0.00 3.11
1418 2318 3.670625 CCGACTACAACATCCAAAAGGA 58.329 45.455 0.00 0.00 0.00 3.36
1419 2319 3.684788 CCGACTACAACATCCAAAAGGAG 59.315 47.826 0.00 0.00 0.00 3.69
1420 2320 4.315803 CGACTACAACATCCAAAAGGAGT 58.684 43.478 0.00 0.00 0.00 3.85
1421 2321 4.389077 CGACTACAACATCCAAAAGGAGTC 59.611 45.833 0.00 0.00 0.00 3.36
1422 2322 4.652822 ACTACAACATCCAAAAGGAGTCC 58.347 43.478 0.00 0.00 0.00 3.85
1423 2323 3.593442 ACAACATCCAAAAGGAGTCCA 57.407 42.857 12.86 0.00 0.00 4.02
1424 2324 3.222603 ACAACATCCAAAAGGAGTCCAC 58.777 45.455 12.86 0.00 0.00 4.02
1425 2325 2.558359 CAACATCCAAAAGGAGTCCACC 59.442 50.000 12.86 0.00 0.00 4.61
1426 2326 1.075536 ACATCCAAAAGGAGTCCACCC 59.924 52.381 12.86 0.00 0.00 4.61
1427 2327 1.355720 CATCCAAAAGGAGTCCACCCT 59.644 52.381 12.86 0.00 35.03 4.34
1428 2328 1.064825 TCCAAAAGGAGTCCACCCTC 58.935 55.000 12.86 0.00 32.57 4.30
1434 2334 3.393360 GAGTCCACCCTCCACCTG 58.607 66.667 0.00 0.00 0.00 4.00
1435 2335 2.203998 AGTCCACCCTCCACCTGG 60.204 66.667 0.00 0.00 0.00 4.45
1436 2336 2.529389 GTCCACCCTCCACCTGGT 60.529 66.667 0.00 0.00 36.34 4.00
1439 2339 3.252284 CACCCTCCACCTGGTGCT 61.252 66.667 21.47 0.00 44.98 4.40
1440 2340 3.252284 ACCCTCCACCTGGTGCTG 61.252 66.667 21.47 14.56 36.34 4.41
1441 2341 4.729918 CCCTCCACCTGGTGCTGC 62.730 72.222 21.47 0.00 36.34 5.25
1443 2343 4.320456 CTCCACCTGGTGCTGCGT 62.320 66.667 21.47 0.00 36.34 5.24
1444 2344 4.314440 TCCACCTGGTGCTGCGTC 62.314 66.667 21.47 0.00 36.34 5.19
1445 2345 4.320456 CCACCTGGTGCTGCGTCT 62.320 66.667 21.47 0.00 31.34 4.18
1623 2895 1.760875 GGAGGATGGTCGCACCCTA 60.761 63.158 3.33 0.00 37.50 3.53
1703 2975 4.196971 GGTCAGTAATTGCCCTATCGTTT 58.803 43.478 0.00 0.00 0.00 3.60
1707 2979 4.035208 CAGTAATTGCCCTATCGTTTGACC 59.965 45.833 0.00 0.00 0.00 4.02
1708 2980 3.366052 AATTGCCCTATCGTTTGACCT 57.634 42.857 0.00 0.00 0.00 3.85
1709 2981 2.107950 TTGCCCTATCGTTTGACCTG 57.892 50.000 0.00 0.00 0.00 4.00
1751 3036 1.668751 GTGTCGCCTTTGTTCAAGTGA 59.331 47.619 0.00 0.00 0.00 3.41
1766 3059 3.555547 TCAAGTGATGTCTCGTTTGTGTG 59.444 43.478 0.00 0.00 0.00 3.82
1767 3060 3.452755 AGTGATGTCTCGTTTGTGTGA 57.547 42.857 0.00 0.00 0.00 3.58
1768 3061 3.792401 AGTGATGTCTCGTTTGTGTGAA 58.208 40.909 0.00 0.00 0.00 3.18
1771 3064 3.802139 TGATGTCTCGTTTGTGTGAAGTC 59.198 43.478 0.00 0.00 0.00 3.01
1772 3065 2.190161 TGTCTCGTTTGTGTGAAGTCG 58.810 47.619 0.00 0.00 0.00 4.18
1773 3066 2.190981 GTCTCGTTTGTGTGAAGTCGT 58.809 47.619 0.00 0.00 0.00 4.34
1774 3067 3.181498 TGTCTCGTTTGTGTGAAGTCGTA 60.181 43.478 0.00 0.00 0.00 3.43
1775 3068 3.179206 GTCTCGTTTGTGTGAAGTCGTAC 59.821 47.826 0.00 0.00 0.00 3.67
1776 3069 3.065786 TCTCGTTTGTGTGAAGTCGTACT 59.934 43.478 0.00 0.00 0.00 2.73
1777 3070 3.110358 TCGTTTGTGTGAAGTCGTACTG 58.890 45.455 0.00 0.00 0.00 2.74
1778 3071 2.855963 CGTTTGTGTGAAGTCGTACTGT 59.144 45.455 0.00 0.00 0.00 3.55
1779 3072 3.301579 CGTTTGTGTGAAGTCGTACTGTG 60.302 47.826 0.00 0.00 0.00 3.66
1780 3073 3.513680 TTGTGTGAAGTCGTACTGTGT 57.486 42.857 0.00 0.00 0.00 3.72
1781 3074 3.074504 TGTGTGAAGTCGTACTGTGTC 57.925 47.619 0.00 0.00 0.00 3.67
1782 3075 2.686405 TGTGTGAAGTCGTACTGTGTCT 59.314 45.455 0.00 0.00 0.00 3.41
1783 3076 3.043586 GTGTGAAGTCGTACTGTGTCTG 58.956 50.000 0.00 0.00 0.00 3.51
1787 3080 0.039074 AGTCGTACTGTGTCTGCTGC 60.039 55.000 0.00 0.00 0.00 5.25
1934 3233 8.043113 TGTCTGGCTATATGTGGATTTATGATC 58.957 37.037 0.00 0.00 0.00 2.92
2043 3342 0.933796 GCGGCTCTAGATGCAAGTTC 59.066 55.000 13.76 0.00 0.00 3.01
2099 3426 4.037208 CAGCTTGTGATCTCTTTTTGTGGT 59.963 41.667 0.00 0.00 0.00 4.16
2121 3448 5.535030 GGTTAAGTTCATCTGGTTCTTTGGT 59.465 40.000 0.00 0.00 0.00 3.67
2213 3541 6.650807 TGAACTGAAGATCTGGATTTGTGTAC 59.349 38.462 0.00 0.00 0.00 2.90
2214 3542 6.114187 ACTGAAGATCTGGATTTGTGTACA 57.886 37.500 0.00 0.00 0.00 2.90
2215 3543 6.533730 ACTGAAGATCTGGATTTGTGTACAA 58.466 36.000 0.00 0.00 0.00 2.41
2216 3544 7.170965 ACTGAAGATCTGGATTTGTGTACAAT 58.829 34.615 0.00 0.00 35.55 2.71
2217 3545 7.667219 ACTGAAGATCTGGATTTGTGTACAATT 59.333 33.333 0.00 0.00 35.55 2.32
2218 3546 8.408043 TGAAGATCTGGATTTGTGTACAATTT 57.592 30.769 0.00 0.00 35.55 1.82
2219 3547 9.513906 TGAAGATCTGGATTTGTGTACAATTTA 57.486 29.630 0.00 0.00 35.55 1.40
2222 3550 9.520515 AGATCTGGATTTGTGTACAATTTAAGT 57.479 29.630 0.00 0.00 35.55 2.24
2225 3553 9.787435 TCTGGATTTGTGTACAATTTAAGTAGT 57.213 29.630 0.00 0.00 35.55 2.73
2226 3554 9.825972 CTGGATTTGTGTACAATTTAAGTAGTG 57.174 33.333 0.00 0.00 35.55 2.74
2227 3555 9.344772 TGGATTTGTGTACAATTTAAGTAGTGT 57.655 29.630 0.00 0.00 35.55 3.55
2244 3572 7.369803 AGTAGTGTATCTTGCAATGAAAGTG 57.630 36.000 0.00 0.00 33.24 3.16
2261 3589 3.427161 AGTGCTCTGTTTTGAAGCAAC 57.573 42.857 0.00 0.00 37.24 4.17
2263 3591 2.854185 GTGCTCTGTTTTGAAGCAACAC 59.146 45.455 0.00 0.00 37.24 3.32
2264 3592 2.159254 TGCTCTGTTTTGAAGCAACACC 60.159 45.455 0.00 0.00 32.17 4.16
2265 3593 2.799562 GCTCTGTTTTGAAGCAACACCC 60.800 50.000 0.00 0.00 30.83 4.61
2267 3595 3.882888 CTCTGTTTTGAAGCAACACCCTA 59.117 43.478 0.00 0.00 30.83 3.53
2268 3596 3.630312 TCTGTTTTGAAGCAACACCCTAC 59.370 43.478 0.00 0.00 30.83 3.18
2269 3597 2.356382 TGTTTTGAAGCAACACCCTACG 59.644 45.455 0.00 0.00 0.00 3.51
2272 3600 2.335316 TGAAGCAACACCCTACGTTT 57.665 45.000 0.00 0.00 0.00 3.60
2273 3601 1.944024 TGAAGCAACACCCTACGTTTG 59.056 47.619 0.00 0.00 0.00 2.93
2276 3604 1.414919 AGCAACACCCTACGTTTGAGA 59.585 47.619 0.00 0.00 0.00 3.27
2277 3605 1.529865 GCAACACCCTACGTTTGAGAC 59.470 52.381 0.00 0.00 0.00 3.36
2278 3606 2.828877 CAACACCCTACGTTTGAGACA 58.171 47.619 0.00 0.00 0.00 3.41
2279 3607 2.521105 ACACCCTACGTTTGAGACAC 57.479 50.000 0.00 0.00 0.00 3.67
2281 3881 1.343465 CACCCTACGTTTGAGACACCT 59.657 52.381 0.00 0.00 0.00 4.00
2284 3884 2.325761 CCTACGTTTGAGACACCTTCG 58.674 52.381 0.00 0.00 0.00 3.79
2325 4084 2.573462 TCTAACTCATTTCCTGGCTGCT 59.427 45.455 0.00 0.00 0.00 4.24
2495 4493 8.816144 TGAAATAAACTTGACTTTTGCATGAAC 58.184 29.630 0.00 0.00 0.00 3.18
2496 4494 8.947055 AAATAAACTTGACTTTTGCATGAACT 57.053 26.923 0.00 0.00 0.00 3.01
2558 4558 9.575783 TGGAAGAAAACAAAAACAACACTATAC 57.424 29.630 0.00 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.868498 GCAGTAGACGCGTCTAGAGAT 59.132 52.381 41.04 26.65 42.31 2.75
268 278 2.009681 TACACCAAGCCAGAGACTCA 57.990 50.000 5.02 0.00 0.00 3.41
283 293 8.808529 CCAACGCAGATATATAAGCTTATACAC 58.191 37.037 24.94 18.42 0.00 2.90
297 307 4.689612 ACCAATCTACCAACGCAGATAT 57.310 40.909 0.00 0.00 31.25 1.63
301 311 3.181510 GCTTAACCAATCTACCAACGCAG 60.182 47.826 0.00 0.00 0.00 5.18
309 319 9.989869 GAATTCACTAAAGCTTAACCAATCTAC 57.010 33.333 0.00 0.00 0.00 2.59
335 347 7.625828 AGGAAATAAACAGAAAATCCCTACG 57.374 36.000 0.00 0.00 0.00 3.51
370 382 5.662208 TGTGGAAGACGGATATTAACCCTAA 59.338 40.000 0.00 0.00 0.00 2.69
371 383 5.210430 TGTGGAAGACGGATATTAACCCTA 58.790 41.667 0.00 0.00 0.00 3.53
398 569 0.928229 GACCATACGGCATCACGAAC 59.072 55.000 0.00 0.00 37.61 3.95
557 761 8.772250 TCAGGAGAAAAACATCTACAATCCTAT 58.228 33.333 0.00 0.00 32.27 2.57
571 775 3.632145 TCCACAAGCTTCAGGAGAAAAAC 59.368 43.478 11.45 0.00 32.35 2.43
572 776 3.897239 TCCACAAGCTTCAGGAGAAAAA 58.103 40.909 11.45 0.00 32.35 1.94
644 850 9.646427 CATTATCTAAGATAGCTTCAGGGTAAC 57.354 37.037 0.00 0.00 35.56 2.50
669 881 2.858622 GCAGCCAGACATGCTTACA 58.141 52.632 0.00 0.00 39.38 2.41
814 1028 5.590145 TCACAATGATGGAACAACAAACAG 58.410 37.500 0.00 0.00 46.01 3.16
823 1037 3.119708 GGACAAGCTCACAATGATGGAAC 60.120 47.826 0.00 0.00 0.00 3.62
831 1045 1.913778 TGCATGGACAAGCTCACAAT 58.086 45.000 0.00 0.00 0.00 2.71
832 1046 1.913778 ATGCATGGACAAGCTCACAA 58.086 45.000 0.00 0.00 0.00 3.33
833 1047 1.913778 AATGCATGGACAAGCTCACA 58.086 45.000 0.00 0.00 0.00 3.58
834 1048 2.029649 ACAAATGCATGGACAAGCTCAC 60.030 45.455 0.00 0.00 0.00 3.51
835 1049 2.029739 CACAAATGCATGGACAAGCTCA 60.030 45.455 0.00 0.00 0.00 4.26
836 1050 2.029649 ACACAAATGCATGGACAAGCTC 60.030 45.455 0.00 0.00 0.00 4.09
837 1051 1.965643 ACACAAATGCATGGACAAGCT 59.034 42.857 0.00 0.00 0.00 3.74
838 1052 2.443887 ACACAAATGCATGGACAAGC 57.556 45.000 0.00 0.00 0.00 4.01
839 1053 4.624015 AGAAACACAAATGCATGGACAAG 58.376 39.130 0.00 0.00 0.00 3.16
840 1054 4.669206 AGAAACACAAATGCATGGACAA 57.331 36.364 0.00 0.00 0.00 3.18
841 1055 4.141981 ACAAGAAACACAAATGCATGGACA 60.142 37.500 0.00 0.00 0.00 4.02
842 1056 4.370917 ACAAGAAACACAAATGCATGGAC 58.629 39.130 0.00 0.00 0.00 4.02
843 1057 4.669206 ACAAGAAACACAAATGCATGGA 57.331 36.364 0.00 0.00 0.00 3.41
844 1058 4.211794 GGAACAAGAAACACAAATGCATGG 59.788 41.667 0.00 0.00 0.00 3.66
845 1059 4.809958 TGGAACAAGAAACACAAATGCATG 59.190 37.500 0.00 0.00 31.92 4.06
846 1060 5.021033 TGGAACAAGAAACACAAATGCAT 57.979 34.783 0.00 0.00 31.92 3.96
847 1061 4.462508 TGGAACAAGAAACACAAATGCA 57.537 36.364 0.00 0.00 31.92 3.96
863 1077 3.119708 GGACAAGCTCACAATGATGGAAC 60.120 47.826 0.00 0.00 0.00 3.62
864 1078 3.084039 GGACAAGCTCACAATGATGGAA 58.916 45.455 0.00 0.00 0.00 3.53
865 1079 2.040145 TGGACAAGCTCACAATGATGGA 59.960 45.455 0.00 0.00 0.00 3.41
866 1080 2.439409 TGGACAAGCTCACAATGATGG 58.561 47.619 0.00 0.00 0.00 3.51
867 1081 3.733988 GCATGGACAAGCTCACAATGATG 60.734 47.826 0.00 0.00 0.00 3.07
868 1082 2.426024 GCATGGACAAGCTCACAATGAT 59.574 45.455 0.00 0.00 0.00 2.45
869 1083 1.814394 GCATGGACAAGCTCACAATGA 59.186 47.619 0.00 0.00 0.00 2.57
870 1084 1.542472 TGCATGGACAAGCTCACAATG 59.458 47.619 0.00 0.00 0.00 2.82
952 1166 7.231519 ACAAGAAATAAAGAAGAACCTCAAGGG 59.768 37.037 0.29 0.00 40.27 3.95
953 1167 8.171164 ACAAGAAATAAAGAAGAACCTCAAGG 57.829 34.615 0.00 0.00 42.17 3.61
954 1168 8.293157 GGACAAGAAATAAAGAAGAACCTCAAG 58.707 37.037 0.00 0.00 0.00 3.02
955 1169 7.777910 TGGACAAGAAATAAAGAAGAACCTCAA 59.222 33.333 0.00 0.00 0.00 3.02
956 1170 7.287061 TGGACAAGAAATAAAGAAGAACCTCA 58.713 34.615 0.00 0.00 0.00 3.86
957 1171 7.745620 TGGACAAGAAATAAAGAAGAACCTC 57.254 36.000 0.00 0.00 0.00 3.85
958 1172 7.309438 GCATGGACAAGAAATAAAGAAGAACCT 60.309 37.037 0.00 0.00 0.00 3.50
959 1173 6.808704 GCATGGACAAGAAATAAAGAAGAACC 59.191 38.462 0.00 0.00 0.00 3.62
960 1174 6.524586 CGCATGGACAAGAAATAAAGAAGAAC 59.475 38.462 0.00 0.00 0.00 3.01
961 1175 6.429692 TCGCATGGACAAGAAATAAAGAAGAA 59.570 34.615 0.00 0.00 0.00 2.52
962 1176 5.937540 TCGCATGGACAAGAAATAAAGAAGA 59.062 36.000 0.00 0.00 0.00 2.87
963 1177 6.182039 TCGCATGGACAAGAAATAAAGAAG 57.818 37.500 0.00 0.00 0.00 2.85
964 1178 6.757897 ATCGCATGGACAAGAAATAAAGAA 57.242 33.333 0.00 0.00 0.00 2.52
965 1179 6.599244 AGAATCGCATGGACAAGAAATAAAGA 59.401 34.615 0.00 0.00 0.00 2.52
966 1180 6.789262 AGAATCGCATGGACAAGAAATAAAG 58.211 36.000 0.00 0.00 0.00 1.85
967 1181 6.757897 AGAATCGCATGGACAAGAAATAAA 57.242 33.333 0.00 0.00 0.00 1.40
968 1182 6.599244 AGAAGAATCGCATGGACAAGAAATAA 59.401 34.615 0.00 0.00 0.00 1.40
969 1183 6.115446 AGAAGAATCGCATGGACAAGAAATA 58.885 36.000 0.00 0.00 0.00 1.40
970 1184 4.946157 AGAAGAATCGCATGGACAAGAAAT 59.054 37.500 0.00 0.00 0.00 2.17
971 1185 4.326826 AGAAGAATCGCATGGACAAGAAA 58.673 39.130 0.00 0.00 0.00 2.52
972 1186 3.942829 AGAAGAATCGCATGGACAAGAA 58.057 40.909 0.00 0.00 0.00 2.52
973 1187 3.616956 AGAAGAATCGCATGGACAAGA 57.383 42.857 0.00 0.00 0.00 3.02
974 1188 4.409570 CAAAGAAGAATCGCATGGACAAG 58.590 43.478 0.00 0.00 0.00 3.16
975 1189 3.366273 GCAAAGAAGAATCGCATGGACAA 60.366 43.478 0.00 0.00 0.00 3.18
976 1190 2.162208 GCAAAGAAGAATCGCATGGACA 59.838 45.455 0.00 0.00 0.00 4.02
977 1191 2.162208 TGCAAAGAAGAATCGCATGGAC 59.838 45.455 0.00 0.00 0.00 4.02
978 1192 2.421073 CTGCAAAGAAGAATCGCATGGA 59.579 45.455 0.00 0.00 31.10 3.41
979 1193 2.421073 TCTGCAAAGAAGAATCGCATGG 59.579 45.455 0.00 0.00 31.10 3.66
980 1194 3.752412 TCTGCAAAGAAGAATCGCATG 57.248 42.857 0.00 0.00 31.10 4.06
981 1195 3.488721 GCATCTGCAAAGAAGAATCGCAT 60.489 43.478 0.00 0.00 41.59 4.73
1218 2118 1.168407 ATATCTGCATGCCACCACGC 61.168 55.000 16.68 0.00 0.00 5.34
1219 2119 1.265095 GAATATCTGCATGCCACCACG 59.735 52.381 16.68 0.00 0.00 4.94
1220 2120 1.265095 CGAATATCTGCATGCCACCAC 59.735 52.381 16.68 0.00 0.00 4.16
1221 2121 1.134128 ACGAATATCTGCATGCCACCA 60.134 47.619 16.68 0.00 0.00 4.17
1222 2122 1.265095 CACGAATATCTGCATGCCACC 59.735 52.381 16.68 0.00 0.00 4.61
1223 2123 2.212652 TCACGAATATCTGCATGCCAC 58.787 47.619 16.68 0.00 0.00 5.01
1224 2124 2.618442 TCACGAATATCTGCATGCCA 57.382 45.000 16.68 1.32 0.00 4.92
1225 2125 3.059325 GTCTTCACGAATATCTGCATGCC 60.059 47.826 16.68 0.00 0.00 4.40
1226 2126 3.059325 GGTCTTCACGAATATCTGCATGC 60.059 47.826 11.82 11.82 0.00 4.06
1227 2127 3.496130 GGGTCTTCACGAATATCTGCATG 59.504 47.826 0.00 0.00 0.00 4.06
1228 2128 3.389329 AGGGTCTTCACGAATATCTGCAT 59.611 43.478 0.00 0.00 0.00 3.96
1229 2129 2.766263 AGGGTCTTCACGAATATCTGCA 59.234 45.455 0.00 0.00 0.00 4.41
1230 2130 3.181475 TGAGGGTCTTCACGAATATCTGC 60.181 47.826 0.00 0.00 0.00 4.26
1231 2131 4.363999 GTGAGGGTCTTCACGAATATCTG 58.636 47.826 0.00 0.00 38.23 2.90
1232 2132 4.657436 GTGAGGGTCTTCACGAATATCT 57.343 45.455 0.00 0.00 38.23 1.98
1240 2140 0.108585 TTGCCAGTGAGGGTCTTCAC 59.891 55.000 5.25 5.25 46.14 3.18
1241 2141 0.397941 CTTGCCAGTGAGGGTCTTCA 59.602 55.000 0.00 0.00 38.09 3.02
1242 2142 0.687354 TCTTGCCAGTGAGGGTCTTC 59.313 55.000 0.00 0.00 38.09 2.87
1243 2143 0.398318 GTCTTGCCAGTGAGGGTCTT 59.602 55.000 0.00 0.00 38.09 3.01
1244 2144 1.484444 GGTCTTGCCAGTGAGGGTCT 61.484 60.000 0.00 0.00 38.09 3.85
1245 2145 1.003233 GGTCTTGCCAGTGAGGGTC 60.003 63.158 0.00 0.00 38.09 4.46
1246 2146 1.770110 TGGTCTTGCCAGTGAGGGT 60.770 57.895 0.00 0.00 43.61 4.34
1247 2147 3.160585 TGGTCTTGCCAGTGAGGG 58.839 61.111 0.00 0.00 43.61 4.30
1255 2155 1.379044 CCAGGGTGATGGTCTTGCC 60.379 63.158 0.00 0.00 35.47 4.52
1256 2156 0.393537 CTCCAGGGTGATGGTCTTGC 60.394 60.000 0.00 0.00 41.43 4.01
1257 2157 0.254178 CCTCCAGGGTGATGGTCTTG 59.746 60.000 0.00 0.00 41.43 3.02
1258 2158 2.702093 CCTCCAGGGTGATGGTCTT 58.298 57.895 0.00 0.00 41.43 3.01
1259 2159 4.488303 CCTCCAGGGTGATGGTCT 57.512 61.111 0.00 0.00 41.43 3.85
1268 2168 2.043450 AGCTCTCGACCTCCAGGG 60.043 66.667 0.00 0.00 40.27 4.45
1269 2169 2.124693 GGAGCTCTCGACCTCCAGG 61.125 68.421 14.64 0.00 45.55 4.45
1270 2170 2.477176 CGGAGCTCTCGACCTCCAG 61.477 68.421 14.64 9.55 46.37 3.86
1271 2171 2.438614 CGGAGCTCTCGACCTCCA 60.439 66.667 14.64 0.00 46.37 3.86
1272 2172 2.124653 TCGGAGCTCTCGACCTCC 60.125 66.667 19.22 10.55 43.35 4.30
1277 2177 0.965866 AATGGTGTCGGAGCTCTCGA 60.966 55.000 19.22 19.22 0.00 4.04
1278 2178 0.803768 CAATGGTGTCGGAGCTCTCG 60.804 60.000 14.64 15.31 0.00 4.04
1279 2179 0.532573 TCAATGGTGTCGGAGCTCTC 59.467 55.000 14.64 2.76 0.00 3.20
1280 2180 0.247736 GTCAATGGTGTCGGAGCTCT 59.752 55.000 14.64 0.00 0.00 4.09
1281 2181 0.037326 TGTCAATGGTGTCGGAGCTC 60.037 55.000 4.71 4.71 0.00 4.09
1282 2182 0.396435 TTGTCAATGGTGTCGGAGCT 59.604 50.000 0.00 0.00 0.00 4.09
1283 2183 0.517316 GTTGTCAATGGTGTCGGAGC 59.483 55.000 0.00 0.00 0.00 4.70
1284 2184 0.790207 CGTTGTCAATGGTGTCGGAG 59.210 55.000 0.00 0.00 0.00 4.63
1285 2185 0.105224 ACGTTGTCAATGGTGTCGGA 59.895 50.000 9.56 0.00 0.00 4.55
1286 2186 0.511221 GACGTTGTCAATGGTGTCGG 59.489 55.000 9.56 0.00 32.09 4.79
1287 2187 1.213491 TGACGTTGTCAATGGTGTCG 58.787 50.000 9.56 0.01 39.78 4.35
1296 2196 0.179234 TCTTGGCCTTGACGTTGTCA 59.821 50.000 3.32 0.00 41.09 3.58
1297 2197 1.464997 GATCTTGGCCTTGACGTTGTC 59.535 52.381 3.32 0.00 0.00 3.18
1298 2198 1.523758 GATCTTGGCCTTGACGTTGT 58.476 50.000 3.32 0.00 0.00 3.32
1299 2199 0.804989 GGATCTTGGCCTTGACGTTG 59.195 55.000 3.32 0.00 0.00 4.10
1300 2200 0.400213 TGGATCTTGGCCTTGACGTT 59.600 50.000 3.32 0.00 0.00 3.99
1301 2201 0.036010 CTGGATCTTGGCCTTGACGT 60.036 55.000 3.32 0.00 0.00 4.34
1302 2202 0.745845 CCTGGATCTTGGCCTTGACG 60.746 60.000 3.32 0.00 0.00 4.35
1303 2203 0.620556 TCCTGGATCTTGGCCTTGAC 59.379 55.000 3.32 0.00 0.00 3.18
1304 2204 0.620556 GTCCTGGATCTTGGCCTTGA 59.379 55.000 3.32 1.92 0.00 3.02
1305 2205 0.329261 TGTCCTGGATCTTGGCCTTG 59.671 55.000 3.32 0.00 0.00 3.61
1306 2206 1.005215 CTTGTCCTGGATCTTGGCCTT 59.995 52.381 3.32 0.00 0.00 4.35
1307 2207 0.622665 CTTGTCCTGGATCTTGGCCT 59.377 55.000 3.32 0.00 0.00 5.19
1308 2208 0.394899 CCTTGTCCTGGATCTTGGCC 60.395 60.000 0.00 0.00 0.00 5.36
1309 2209 0.620556 TCCTTGTCCTGGATCTTGGC 59.379 55.000 0.00 0.00 0.00 4.52
1310 2210 1.211457 CCTCCTTGTCCTGGATCTTGG 59.789 57.143 0.00 0.70 32.56 3.61
1311 2211 1.211457 CCCTCCTTGTCCTGGATCTTG 59.789 57.143 0.00 0.00 32.56 3.02
1312 2212 1.589414 CCCTCCTTGTCCTGGATCTT 58.411 55.000 0.00 0.00 32.56 2.40
1313 2213 0.985490 GCCCTCCTTGTCCTGGATCT 60.985 60.000 0.00 0.00 32.56 2.75
1314 2214 1.274703 TGCCCTCCTTGTCCTGGATC 61.275 60.000 0.00 0.00 32.56 3.36
1315 2215 0.625683 ATGCCCTCCTTGTCCTGGAT 60.626 55.000 0.00 0.00 32.56 3.41
1316 2216 0.846427 AATGCCCTCCTTGTCCTGGA 60.846 55.000 0.00 0.00 0.00 3.86
1317 2217 0.394899 GAATGCCCTCCTTGTCCTGG 60.395 60.000 0.00 0.00 0.00 4.45
1318 2218 0.394899 GGAATGCCCTCCTTGTCCTG 60.395 60.000 0.00 0.00 32.21 3.86
1319 2219 2.002625 GGAATGCCCTCCTTGTCCT 58.997 57.895 0.00 0.00 32.21 3.85
1320 2220 4.666105 GGAATGCCCTCCTTGTCC 57.334 61.111 0.00 0.00 32.21 4.02
1330 2230 4.506255 CTGGTCCGGGGGAATGCC 62.506 72.222 0.00 0.00 31.38 4.40
1332 2232 3.704231 CTGCTGGTCCGGGGGAATG 62.704 68.421 0.00 0.00 31.38 2.67
1333 2233 3.411517 CTGCTGGTCCGGGGGAAT 61.412 66.667 0.00 0.00 31.38 3.01
1340 2240 3.740128 ATAAGGCGCTGCTGGTCCG 62.740 63.158 7.64 0.00 0.00 4.79
1341 2241 1.889573 GATAAGGCGCTGCTGGTCC 60.890 63.158 7.64 0.00 0.00 4.46
1342 2242 0.462759 AAGATAAGGCGCTGCTGGTC 60.463 55.000 7.64 0.00 0.00 4.02
1343 2243 0.035056 AAAGATAAGGCGCTGCTGGT 60.035 50.000 7.64 0.00 0.00 4.00
1344 2244 0.379669 CAAAGATAAGGCGCTGCTGG 59.620 55.000 7.64 0.00 0.00 4.85
1345 2245 0.248377 GCAAAGATAAGGCGCTGCTG 60.248 55.000 7.64 0.00 0.00 4.41
1346 2246 0.393537 AGCAAAGATAAGGCGCTGCT 60.394 50.000 7.64 9.26 35.38 4.24
1347 2247 0.248377 CAGCAAAGATAAGGCGCTGC 60.248 55.000 7.64 6.63 43.09 5.25
1348 2248 3.911989 CAGCAAAGATAAGGCGCTG 57.088 52.632 7.64 0.00 43.55 5.18
1349 2249 1.379642 GCCAGCAAAGATAAGGCGCT 61.380 55.000 7.64 0.00 35.42 5.92
1350 2250 1.064783 GCCAGCAAAGATAAGGCGC 59.935 57.895 0.00 0.00 35.42 6.53
1352 2252 1.470458 GCTTGCCAGCAAAGATAAGGC 60.470 52.381 4.63 0.90 46.49 4.35
1353 2253 2.573941 GCTTGCCAGCAAAGATAAGG 57.426 50.000 4.63 0.00 46.49 2.69
1364 2264 2.553765 ATCCTCCAGCTGCTTGCCAG 62.554 60.000 8.66 0.00 44.23 4.85
1365 2265 2.609534 ATCCTCCAGCTGCTTGCCA 61.610 57.895 8.66 0.00 44.23 4.92
1366 2266 2.119655 CATCCTCCAGCTGCTTGCC 61.120 63.158 8.66 0.00 44.23 4.52
1367 2267 2.119655 CCATCCTCCAGCTGCTTGC 61.120 63.158 8.66 0.00 43.29 4.01
1368 2268 0.747283 GACCATCCTCCAGCTGCTTG 60.747 60.000 8.66 0.00 0.00 4.01
1369 2269 1.606531 GACCATCCTCCAGCTGCTT 59.393 57.895 8.66 0.00 0.00 3.91
1370 2270 2.729479 CGACCATCCTCCAGCTGCT 61.729 63.158 8.66 0.00 0.00 4.24
1371 2271 2.202987 CGACCATCCTCCAGCTGC 60.203 66.667 8.66 0.00 0.00 5.25
1372 2272 2.202987 GCGACCATCCTCCAGCTG 60.203 66.667 6.78 6.78 0.00 4.24
1373 2273 2.685017 TGCGACCATCCTCCAGCT 60.685 61.111 0.00 0.00 0.00 4.24
1374 2274 2.512515 GTGCGACCATCCTCCAGC 60.513 66.667 0.00 0.00 0.00 4.85
1375 2275 2.187946 GGTGCGACCATCCTCCAG 59.812 66.667 0.00 0.00 38.42 3.86
1376 2276 3.399181 GGGTGCGACCATCCTCCA 61.399 66.667 7.49 0.00 41.02 3.86
1387 2287 4.814294 GTAGTCGGCCAGGGTGCG 62.814 72.222 2.24 0.00 0.00 5.34
1388 2288 3.248446 TTGTAGTCGGCCAGGGTGC 62.248 63.158 2.24 0.00 0.00 5.01
1389 2289 1.375523 GTTGTAGTCGGCCAGGGTG 60.376 63.158 2.24 0.00 0.00 4.61
1390 2290 1.198759 ATGTTGTAGTCGGCCAGGGT 61.199 55.000 2.24 0.00 0.00 4.34
1391 2291 0.462047 GATGTTGTAGTCGGCCAGGG 60.462 60.000 2.24 0.00 0.00 4.45
1392 2292 0.462047 GGATGTTGTAGTCGGCCAGG 60.462 60.000 2.24 0.00 0.00 4.45
1393 2293 0.249120 TGGATGTTGTAGTCGGCCAG 59.751 55.000 2.24 0.00 0.00 4.85
1394 2294 0.687920 TTGGATGTTGTAGTCGGCCA 59.312 50.000 2.24 0.00 0.00 5.36
1395 2295 1.816074 TTTGGATGTTGTAGTCGGCC 58.184 50.000 0.00 0.00 0.00 6.13
1396 2296 2.161609 CCTTTTGGATGTTGTAGTCGGC 59.838 50.000 0.00 0.00 44.07 5.54
1397 2297 3.670625 TCCTTTTGGATGTTGTAGTCGG 58.329 45.455 0.00 0.00 45.19 4.79
1410 2310 3.652581 GAGGGTGGACTCCTTTTGG 57.347 57.895 0.00 0.00 42.21 3.28
1417 2317 2.294078 CCAGGTGGAGGGTGGACTC 61.294 68.421 0.00 0.00 37.39 3.36
1418 2318 2.203998 CCAGGTGGAGGGTGGACT 60.204 66.667 0.00 0.00 37.39 3.85
1419 2319 2.529389 ACCAGGTGGAGGGTGGAC 60.529 66.667 2.10 0.00 35.67 4.02
1423 2323 3.252284 CAGCACCAGGTGGAGGGT 61.252 66.667 21.77 0.00 39.53 4.34
1424 2324 4.729918 GCAGCACCAGGTGGAGGG 62.730 72.222 21.77 0.00 43.34 4.30
1426 2326 4.320456 ACGCAGCACCAGGTGGAG 62.320 66.667 21.77 9.67 43.34 3.86
1427 2327 4.314440 GACGCAGCACCAGGTGGA 62.314 66.667 21.77 0.00 43.34 4.02
1428 2328 4.320456 AGACGCAGCACCAGGTGG 62.320 66.667 21.77 6.60 43.34 4.61
1429 2329 3.046087 CAGACGCAGCACCAGGTG 61.046 66.667 16.16 16.16 45.83 4.00
1430 2330 4.996434 GCAGACGCAGCACCAGGT 62.996 66.667 0.00 0.00 38.36 4.00
1441 2341 3.792047 CATGCCACCACGCAGACG 61.792 66.667 0.00 0.00 43.26 4.18
1442 2342 4.107051 GCATGCCACCACGCAGAC 62.107 66.667 6.36 0.00 43.26 3.51
1443 2343 4.639906 TGCATGCCACCACGCAGA 62.640 61.111 16.68 0.00 43.26 4.26
1445 2345 3.923782 ATCTGCATGCCACCACGCA 62.924 57.895 16.68 0.00 44.35 5.24
1623 2895 1.557099 TCTGGATGTTGTAGTCGGCT 58.443 50.000 0.00 0.00 0.00 5.52
1703 2975 3.949980 AGCAGCAGCAGCAGGTCA 61.950 61.111 12.92 0.00 45.49 4.02
1751 3036 2.794910 CGACTTCACACAAACGAGACAT 59.205 45.455 0.00 0.00 0.00 3.06
1766 3059 2.320367 CAGCAGACACAGTACGACTTC 58.680 52.381 0.00 0.00 0.00 3.01
1767 3060 1.603172 GCAGCAGACACAGTACGACTT 60.603 52.381 0.00 0.00 0.00 3.01
1768 3061 0.039074 GCAGCAGACACAGTACGACT 60.039 55.000 0.00 0.00 0.00 4.18
1771 3064 1.502231 AAAGCAGCAGACACAGTACG 58.498 50.000 0.00 0.00 0.00 3.67
1772 3065 4.142816 CCATTAAAGCAGCAGACACAGTAC 60.143 45.833 0.00 0.00 0.00 2.73
1773 3066 4.002982 CCATTAAAGCAGCAGACACAGTA 58.997 43.478 0.00 0.00 0.00 2.74
1774 3067 2.816087 CCATTAAAGCAGCAGACACAGT 59.184 45.455 0.00 0.00 0.00 3.55
1775 3068 3.076621 TCCATTAAAGCAGCAGACACAG 58.923 45.455 0.00 0.00 0.00 3.66
1776 3069 2.813754 GTCCATTAAAGCAGCAGACACA 59.186 45.455 0.00 0.00 0.00 3.72
1777 3070 2.162408 GGTCCATTAAAGCAGCAGACAC 59.838 50.000 0.00 0.00 0.00 3.67
1778 3071 2.224744 TGGTCCATTAAAGCAGCAGACA 60.225 45.455 0.00 0.00 0.00 3.41
1779 3072 2.436417 TGGTCCATTAAAGCAGCAGAC 58.564 47.619 0.00 0.00 0.00 3.51
1780 3073 2.877097 TGGTCCATTAAAGCAGCAGA 57.123 45.000 0.00 0.00 0.00 4.26
1781 3074 2.032550 CGATGGTCCATTAAAGCAGCAG 59.967 50.000 5.65 0.00 31.27 4.24
1782 3075 2.016318 CGATGGTCCATTAAAGCAGCA 58.984 47.619 5.65 0.00 31.27 4.41
1783 3076 2.288666 TCGATGGTCCATTAAAGCAGC 58.711 47.619 5.65 0.00 0.00 5.25
1952 3251 8.884124 TTCATTCAGAATCCAAAAACTAGGAT 57.116 30.769 0.00 0.00 46.33 3.24
2099 3426 6.361433 TCACCAAAGAACCAGATGAACTTAA 58.639 36.000 0.00 0.00 0.00 1.85
2121 3448 2.103771 ACAGAAACTGCAGCTCTTCTCA 59.896 45.455 15.27 0.00 34.37 3.27
2217 3545 9.502091 ACTTTCATTGCAAGATACACTACTTAA 57.498 29.630 4.94 0.00 0.00 1.85
2218 3546 8.935844 CACTTTCATTGCAAGATACACTACTTA 58.064 33.333 4.94 0.00 0.00 2.24
2219 3547 7.573843 GCACTTTCATTGCAAGATACACTACTT 60.574 37.037 4.94 0.00 39.93 2.24
2220 3548 6.128172 GCACTTTCATTGCAAGATACACTACT 60.128 38.462 4.94 0.00 39.93 2.57
2221 3549 6.024049 GCACTTTCATTGCAAGATACACTAC 58.976 40.000 4.94 0.00 39.93 2.73
2222 3550 5.939883 AGCACTTTCATTGCAAGATACACTA 59.060 36.000 4.94 0.00 42.83 2.74
2223 3551 4.763793 AGCACTTTCATTGCAAGATACACT 59.236 37.500 4.94 0.00 42.83 3.55
2224 3552 5.051891 AGCACTTTCATTGCAAGATACAC 57.948 39.130 4.94 0.00 42.83 2.90
2225 3553 5.005740 AGAGCACTTTCATTGCAAGATACA 58.994 37.500 4.94 0.00 42.83 2.29
2226 3554 5.106396 ACAGAGCACTTTCATTGCAAGATAC 60.106 40.000 4.94 0.00 42.83 2.24
2227 3555 5.005740 ACAGAGCACTTTCATTGCAAGATA 58.994 37.500 4.94 0.00 42.83 1.98
2228 3556 3.825014 ACAGAGCACTTTCATTGCAAGAT 59.175 39.130 4.94 0.00 42.83 2.40
2244 3572 2.463876 GGTGTTGCTTCAAAACAGAGC 58.536 47.619 2.73 0.00 38.17 4.09
2261 3589 1.343465 AGGTGTCTCAAACGTAGGGTG 59.657 52.381 0.00 0.00 0.00 4.61
2263 3591 2.685100 GAAGGTGTCTCAAACGTAGGG 58.315 52.381 0.00 0.00 0.00 3.53
2264 3592 2.030540 TCGAAGGTGTCTCAAACGTAGG 60.031 50.000 0.00 0.00 0.00 3.18
2265 3593 3.235195 CTCGAAGGTGTCTCAAACGTAG 58.765 50.000 0.00 0.00 0.00 3.51
2267 3595 1.868519 GCTCGAAGGTGTCTCAAACGT 60.869 52.381 0.00 0.00 0.00 3.99
2268 3596 0.784778 GCTCGAAGGTGTCTCAAACG 59.215 55.000 0.00 0.00 0.00 3.60
2269 3597 1.149148 GGCTCGAAGGTGTCTCAAAC 58.851 55.000 0.00 0.00 0.00 2.93
2272 3600 1.602605 TCGGCTCGAAGGTGTCTCA 60.603 57.895 0.00 0.00 31.06 3.27
2273 3601 1.153997 GTCGGCTCGAAGGTGTCTC 60.154 63.158 0.00 0.00 37.72 3.36
2276 3604 0.179067 TTTTGTCGGCTCGAAGGTGT 60.179 50.000 0.00 0.00 37.72 4.16
2277 3605 1.156736 ATTTTGTCGGCTCGAAGGTG 58.843 50.000 0.00 0.00 37.72 4.00
2278 3606 2.754946 TATTTTGTCGGCTCGAAGGT 57.245 45.000 0.00 0.00 37.72 3.50
2279 3607 3.194861 TCATATTTTGTCGGCTCGAAGG 58.805 45.455 0.00 0.00 37.72 3.46
2281 3881 4.118093 TCTCATATTTTGTCGGCTCGAA 57.882 40.909 0.00 0.00 37.72 3.71
2284 3884 7.439655 AGTTAGAATCTCATATTTTGTCGGCTC 59.560 37.037 0.00 0.00 0.00 4.70
2325 4084 6.724263 CAAGTGCATTGTCAAAGTACAGTAA 58.276 36.000 10.89 0.00 33.95 2.24
2376 4374 2.038863 ACCCCACCTCATCAGTTGTA 57.961 50.000 0.00 0.00 0.00 2.41
2377 4375 1.073923 GAACCCCACCTCATCAGTTGT 59.926 52.381 0.00 0.00 0.00 3.32
2378 4376 1.614317 GGAACCCCACCTCATCAGTTG 60.614 57.143 0.00 0.00 0.00 3.16
2379 4377 0.698818 GGAACCCCACCTCATCAGTT 59.301 55.000 0.00 0.00 0.00 3.16
2381 4379 0.254178 CAGGAACCCCACCTCATCAG 59.746 60.000 0.00 0.00 35.35 2.90
2382 4380 1.207488 CCAGGAACCCCACCTCATCA 61.207 60.000 0.00 0.00 35.35 3.07
2383 4381 1.609783 CCAGGAACCCCACCTCATC 59.390 63.158 0.00 0.00 35.35 2.92
2384 4382 1.930656 CCCAGGAACCCCACCTCAT 60.931 63.158 0.00 0.00 35.35 2.90
2386 4384 0.623617 ATACCCAGGAACCCCACCTC 60.624 60.000 0.00 0.00 35.35 3.85
2387 4385 0.726366 TATACCCAGGAACCCCACCT 59.274 55.000 0.00 0.00 38.40 4.00
2484 4482 2.093288 TGGCCAAACAGTTCATGCAAAA 60.093 40.909 0.61 0.00 0.00 2.44
2487 4485 1.068895 CTTGGCCAAACAGTTCATGCA 59.931 47.619 20.91 0.00 0.00 3.96
2495 4493 6.229733 TGGAATATTTTTCTTGGCCAAACAG 58.770 36.000 20.91 8.26 0.00 3.16
2496 4494 6.179906 TGGAATATTTTTCTTGGCCAAACA 57.820 33.333 20.91 6.12 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.