Multiple sequence alignment - TraesCS6B01G163200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G163200 chr6B 100.000 5285 0 0 1 5285 169319725 169325009 0.000000e+00 9760.0
1 TraesCS6B01G163200 chr6B 95.414 1134 45 3 4082 5208 169395925 169397058 0.000000e+00 1799.0
2 TraesCS6B01G163200 chr6D 90.164 5246 328 97 1 5141 89005385 89010547 0.000000e+00 6656.0
3 TraesCS6B01G163200 chr6D 97.059 68 2 0 5141 5208 89010787 89010854 1.200000e-21 115.0
4 TraesCS6B01G163200 chr6A 93.368 3800 184 25 1452 5208 107116724 107120498 0.000000e+00 5559.0
5 TraesCS6B01G163200 chr6A 85.550 1128 70 45 288 1390 107115647 107116706 0.000000e+00 1094.0
6 TraesCS6B01G163200 chr6A 82.767 412 25 24 1 393 107115235 107115619 5.100000e-85 326.0
7 TraesCS6B01G163200 chr5B 94.318 88 4 1 5199 5285 609926756 609926669 3.320000e-27 134.0
8 TraesCS6B01G163200 chr1D 93.976 83 5 0 5203 5285 403521271 403521189 5.560000e-25 126.0
9 TraesCS6B01G163200 chr3B 93.976 83 3 1 5205 5285 790321332 790321414 2.000000e-24 124.0
10 TraesCS6B01G163200 chr7B 93.902 82 3 2 5204 5285 653377015 653377094 7.190000e-24 122.0
11 TraesCS6B01G163200 chr7B 91.765 85 6 1 5202 5285 211370681 211370765 3.340000e-22 117.0
12 TraesCS6B01G163200 chr4A 91.011 89 8 0 5197 5285 115297408 115297496 2.590000e-23 121.0
13 TraesCS6B01G163200 chr4A 90.805 87 7 1 5200 5285 38778135 38778221 1.200000e-21 115.0
14 TraesCS6B01G163200 chr2B 92.771 83 4 2 5204 5285 626878614 626878695 9.300000e-23 119.0
15 TraesCS6B01G163200 chr2B 87.931 58 6 1 4676 4732 678568384 678568327 3.420000e-07 67.6
16 TraesCS6B01G163200 chr1A 90.805 87 7 1 5200 5285 40891070 40891156 1.200000e-21 115.0
17 TraesCS6B01G163200 chr2A 89.474 57 5 1 4676 4731 706284773 706284717 2.640000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G163200 chr6B 169319725 169325009 5284 False 9760.000000 9760 100.000000 1 5285 1 chr6B.!!$F1 5284
1 TraesCS6B01G163200 chr6B 169395925 169397058 1133 False 1799.000000 1799 95.414000 4082 5208 1 chr6B.!!$F2 1126
2 TraesCS6B01G163200 chr6D 89005385 89010854 5469 False 3385.500000 6656 93.611500 1 5208 2 chr6D.!!$F1 5207
3 TraesCS6B01G163200 chr6A 107115235 107120498 5263 False 2326.333333 5559 87.228333 1 5208 3 chr6A.!!$F1 5207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 1024 0.109226 CGACACCGGGAGTCTTCTTC 60.109 60.0 21.98 1.71 33.89 2.87 F
1997 2207 0.038310 CTCCCCCAGTTTCACCTTCC 59.962 60.0 0.00 0.00 0.00 3.46 F
2320 2530 0.400525 GGATGATCCAGGGGTCAGGA 60.401 60.0 6.60 0.00 36.28 3.86 F
3707 3923 0.482446 AGGTTGGCCATGGAAAGTGA 59.518 50.0 18.40 0.00 37.19 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2478 1.138859 CTGGAGGATGCACGGATAACA 59.861 52.381 0.00 0.0 28.70 2.41 R
3682 3898 0.471591 TCCATGGCCAACCTTGCTTT 60.472 50.000 10.96 0.0 39.30 3.51 R
3846 4062 0.524862 CACTGGCAGACAAAGCATCC 59.475 55.000 23.66 0.0 0.00 3.51 R
4847 5101 1.028905 TCACAACCTTTTTGGAGCGG 58.971 50.000 0.00 0.0 39.71 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.027255 GGCCGGCTCTCTCCTTTTTC 61.027 60.000 28.56 0.00 0.00 2.29
48 49 1.611936 GCCGGCTCTCTCCTTTTTCTT 60.612 52.381 22.15 0.00 0.00 2.52
55 56 5.645929 GGCTCTCTCCTTTTTCTTAGGAAAG 59.354 44.000 0.00 0.00 41.13 2.62
68 71 7.569599 TTCTTAGGAAAGAAATGGGAGTAGT 57.430 36.000 0.00 0.00 46.32 2.73
166 171 4.096003 GCAGCCCCTAGCCGACAA 62.096 66.667 0.00 0.00 45.47 3.18
167 172 2.187946 CAGCCCCTAGCCGACAAG 59.812 66.667 0.00 0.00 45.47 3.16
168 173 3.083997 AGCCCCTAGCCGACAAGG 61.084 66.667 0.00 0.00 45.47 3.61
173 178 1.447643 CCTAGCCGACAAGGGATGG 59.552 63.158 0.00 0.00 41.48 3.51
174 179 1.447643 CTAGCCGACAAGGGATGGG 59.552 63.158 0.00 0.00 41.48 4.00
175 180 1.306654 TAGCCGACAAGGGATGGGT 60.307 57.895 0.00 0.00 41.48 4.51
177 182 0.694444 AGCCGACAAGGGATGGGTAT 60.694 55.000 0.00 0.00 41.48 2.73
178 183 0.182775 GCCGACAAGGGATGGGTATT 59.817 55.000 0.00 0.00 41.48 1.89
190 204 2.507407 TGGGTATTTTGGAGTCCAGC 57.493 50.000 12.67 0.00 33.81 4.85
197 211 1.701031 TTTGGAGTCCAGCGGGTCAA 61.701 55.000 12.67 0.00 33.81 3.18
198 212 2.111999 TTGGAGTCCAGCGGGTCAAG 62.112 60.000 12.67 0.00 33.81 3.02
199 213 2.283529 GGAGTCCAGCGGGTCAAGA 61.284 63.158 3.60 0.00 34.93 3.02
270 284 3.554692 GAGATGCACCGCCGAACG 61.555 66.667 0.00 0.00 43.15 3.95
359 390 3.596214 CCCAGTCAACGCAGTAACTAAT 58.404 45.455 0.00 0.00 45.00 1.73
360 391 4.000988 CCCAGTCAACGCAGTAACTAATT 58.999 43.478 0.00 0.00 45.00 1.40
362 393 5.048991 CCCAGTCAACGCAGTAACTAATTTT 60.049 40.000 0.00 0.00 45.00 1.82
363 394 6.077838 CCAGTCAACGCAGTAACTAATTTTC 58.922 40.000 0.00 0.00 45.00 2.29
364 395 6.293190 CCAGTCAACGCAGTAACTAATTTTCA 60.293 38.462 0.00 0.00 45.00 2.69
365 396 6.573725 CAGTCAACGCAGTAACTAATTTTCAC 59.426 38.462 0.00 0.00 45.00 3.18
366 397 5.849604 GTCAACGCAGTAACTAATTTTCACC 59.150 40.000 0.00 0.00 45.00 4.02
377 541 2.270352 ATTTTCACCTCACCGCTTGA 57.730 45.000 0.00 0.00 0.00 3.02
418 583 2.861006 GCGACGGAAGCAAAGGAC 59.139 61.111 0.00 0.00 34.19 3.85
456 621 0.863119 GAATCCAAATCTGCGCACGC 60.863 55.000 5.66 8.33 42.35 5.34
513 681 3.408020 CCGTCGCCGCGAAGAAAA 61.408 61.111 27.01 0.00 37.53 2.29
516 684 3.419759 TCGCCGCGAAGAAAAGCC 61.420 61.111 14.27 0.00 31.06 4.35
525 693 0.679505 GAAGAAAAGCCCCGCCTTTT 59.320 50.000 6.44 6.44 45.07 2.27
526 694 1.070134 GAAGAAAAGCCCCGCCTTTTT 59.930 47.619 7.71 0.00 43.12 1.94
527 695 0.679505 AGAAAAGCCCCGCCTTTTTC 59.320 50.000 7.71 6.42 43.12 2.29
528 696 0.666274 GAAAAGCCCCGCCTTTTTCG 60.666 55.000 7.71 0.00 43.12 3.46
529 697 1.396607 AAAAGCCCCGCCTTTTTCGT 61.397 50.000 0.00 0.00 40.99 3.85
530 698 0.537828 AAAGCCCCGCCTTTTTCGTA 60.538 50.000 0.00 0.00 31.25 3.43
531 699 1.239296 AAGCCCCGCCTTTTTCGTAC 61.239 55.000 0.00 0.00 0.00 3.67
532 700 3.030763 GCCCCGCCTTTTTCGTACG 62.031 63.158 9.53 9.53 0.00 3.67
533 701 1.668793 CCCCGCCTTTTTCGTACGT 60.669 57.895 16.05 0.00 0.00 3.57
534 702 0.389687 CCCCGCCTTTTTCGTACGTA 60.390 55.000 16.05 1.99 0.00 3.57
535 703 0.715551 CCCGCCTTTTTCGTACGTAC 59.284 55.000 15.90 15.90 0.00 3.67
555 729 2.159407 ACGTAGCGCTAGTTTCTCTTCC 60.159 50.000 19.48 0.46 0.00 3.46
556 730 2.097791 CGTAGCGCTAGTTTCTCTTCCT 59.902 50.000 19.48 0.00 0.00 3.36
558 732 1.478916 AGCGCTAGTTTCTCTTCCTCC 59.521 52.381 8.99 0.00 0.00 4.30
648 836 2.498726 CTCTCCGCCTGCTCTTCC 59.501 66.667 0.00 0.00 0.00 3.46
651 839 2.283894 TCCGCCTGCTCTTCCTCA 60.284 61.111 0.00 0.00 0.00 3.86
699 887 5.066913 ACTTCTCCTTCCAAATTCCAAGT 57.933 39.130 0.00 0.00 0.00 3.16
704 892 6.947464 TCTCCTTCCAAATTCCAAGTAGTAG 58.053 40.000 0.00 0.00 0.00 2.57
705 893 6.500751 TCTCCTTCCAAATTCCAAGTAGTAGT 59.499 38.462 0.00 0.00 0.00 2.73
708 896 8.319146 TCCTTCCAAATTCCAAGTAGTAGTAAG 58.681 37.037 0.00 0.00 0.00 2.34
709 897 7.553044 CCTTCCAAATTCCAAGTAGTAGTAAGG 59.447 40.741 0.00 0.00 0.00 2.69
710 898 7.801893 TCCAAATTCCAAGTAGTAGTAAGGA 57.198 36.000 0.00 0.00 0.00 3.36
712 900 8.662255 TCCAAATTCCAAGTAGTAGTAAGGAAA 58.338 33.333 13.10 0.00 38.50 3.13
713 901 9.292195 CCAAATTCCAAGTAGTAGTAAGGAAAA 57.708 33.333 13.10 0.00 38.50 2.29
725 913 5.450818 AGTAAGGAAAATAGGCATCCACA 57.549 39.130 0.00 0.00 35.62 4.17
831 1022 3.682792 CGACACCGGGAGTCTTCT 58.317 61.111 21.98 0.00 33.89 2.85
832 1023 1.965219 CGACACCGGGAGTCTTCTT 59.035 57.895 21.98 0.00 33.89 2.52
833 1024 0.109226 CGACACCGGGAGTCTTCTTC 60.109 60.000 21.98 1.71 33.89 2.87
844 1035 3.449018 GGAGTCTTCTTCAGTGCTCCATA 59.551 47.826 0.00 0.00 41.43 2.74
845 1036 4.081420 GGAGTCTTCTTCAGTGCTCCATAA 60.081 45.833 0.00 0.00 41.43 1.90
849 1040 4.690748 TCTTCTTCAGTGCTCCATAAAACG 59.309 41.667 0.00 0.00 0.00 3.60
906 1097 0.966920 CCAACGGCCCGAGATATAGT 59.033 55.000 11.71 0.00 0.00 2.12
920 1111 6.049149 CGAGATATAGTGATCCTCCTCTCTC 58.951 48.000 0.00 0.00 0.00 3.20
922 1113 7.200434 AGATATAGTGATCCTCCTCTCTCTC 57.800 44.000 0.00 0.00 0.00 3.20
924 1115 3.582998 AGTGATCCTCCTCTCTCTCTG 57.417 52.381 0.00 0.00 0.00 3.35
925 1116 2.852449 AGTGATCCTCCTCTCTCTCTGT 59.148 50.000 0.00 0.00 0.00 3.41
926 1117 3.269381 AGTGATCCTCCTCTCTCTCTGTT 59.731 47.826 0.00 0.00 0.00 3.16
930 1121 0.455410 CTCCTCTCTCTCTGTTGCCG 59.545 60.000 0.00 0.00 0.00 5.69
935 1126 2.507992 CTCTCTGTTGCCGCTCCG 60.508 66.667 0.00 0.00 0.00 4.63
936 1127 3.288308 CTCTCTGTTGCCGCTCCGT 62.288 63.158 0.00 0.00 0.00 4.69
937 1128 3.114616 CTCTGTTGCCGCTCCGTG 61.115 66.667 0.00 0.00 0.00 4.94
938 1129 3.573772 CTCTGTTGCCGCTCCGTGA 62.574 63.158 0.00 0.00 0.00 4.35
939 1130 3.114616 CTGTTGCCGCTCCGTGAG 61.115 66.667 0.00 0.00 0.00 3.51
1023 1214 2.626467 GGGGAGGATGGGGTTGCTT 61.626 63.158 0.00 0.00 0.00 3.91
1035 1226 0.941542 GGTTGCTTGTGCTGTTCGTA 59.058 50.000 0.00 0.00 40.48 3.43
1083 1274 2.037527 GGAGGAGAGGTGGACGGT 59.962 66.667 0.00 0.00 0.00 4.83
1094 1285 1.005037 TGGACGGTGTGCATGTCTC 60.005 57.895 10.00 3.55 33.21 3.36
1100 1291 1.630244 GGTGTGCATGTCTCGTCTGC 61.630 60.000 0.00 0.00 36.45 4.26
1101 1292 0.668706 GTGTGCATGTCTCGTCTGCT 60.669 55.000 0.00 0.00 36.84 4.24
1128 1319 0.393673 GGCCTGCCTCTTCTTCTTCC 60.394 60.000 0.00 0.00 0.00 3.46
1143 1334 1.613630 TTCCACCTCTGCTCCTCCC 60.614 63.158 0.00 0.00 0.00 4.30
1149 1340 1.391157 CCTCTGCTCCTCCCTCTTCG 61.391 65.000 0.00 0.00 0.00 3.79
1187 1378 5.048573 GGGATCTCGTAAGTACTCTCATTCC 60.049 48.000 0.00 0.00 39.48 3.01
1202 1393 3.835395 CTCATTCCTGTAGGATAGGGACC 59.165 52.174 0.66 0.00 44.98 4.46
1281 1473 4.082190 TGAGTACGAGTCCCTTTCATCTTG 60.082 45.833 0.00 0.00 0.00 3.02
1283 1475 3.320673 ACGAGTCCCTTTCATCTTGTC 57.679 47.619 0.00 0.00 0.00 3.18
1291 1483 7.066781 AGTCCCTTTCATCTTGTCCTTAAAAA 58.933 34.615 0.00 0.00 0.00 1.94
1315 1507 1.944709 AGGCCGTTGTTGTTTACTCAC 59.055 47.619 0.00 0.00 0.00 3.51
1317 1509 1.918543 GCCGTTGTTGTTTACTCACGC 60.919 52.381 0.00 0.00 34.65 5.34
1333 1525 4.237724 CTCACGCAAAGAGTATCAGTTCA 58.762 43.478 0.00 0.00 37.82 3.18
1389 1581 7.016268 ACTGTTTCTGGACCTTTCTAGTCATTA 59.984 37.037 0.00 0.00 35.89 1.90
1390 1582 7.918076 TGTTTCTGGACCTTTCTAGTCATTAT 58.082 34.615 0.00 0.00 35.89 1.28
1423 1615 7.611467 TCAATTAGCACTCATCACTACCAATTT 59.389 33.333 0.00 0.00 0.00 1.82
1451 1643 9.950496 ATTTACTTCTTGTCTCACAGAATATGT 57.050 29.630 0.00 0.00 45.43 2.29
1455 1647 7.933577 ACTTCTTGTCTCACAGAATATGTTCAA 59.066 33.333 4.92 0.00 41.41 2.69
1461 1653 7.175467 TGTCTCACAGAATATGTTCAATTTGCT 59.825 33.333 4.92 0.00 41.41 3.91
1475 1667 8.296713 TGTTCAATTTGCTTACAAGTAATCCTC 58.703 33.333 0.00 0.00 37.04 3.71
1476 1668 7.072177 TCAATTTGCTTACAAGTAATCCTCG 57.928 36.000 0.00 0.00 37.04 4.63
1478 1670 2.901249 TGCTTACAAGTAATCCTCGCC 58.099 47.619 0.00 0.00 0.00 5.54
1499 1691 3.003275 CCGTTTGCTAAGTTTGCTGAAGA 59.997 43.478 10.60 0.00 0.00 2.87
1578 1770 3.059188 ACGGTCAATTTGCTTACAAGACG 60.059 43.478 0.00 0.00 37.04 4.18
1615 1825 4.201822 GGAGACGTTTGCTTATGATGAACC 60.202 45.833 0.00 0.00 0.00 3.62
1840 2050 1.303309 GCTGATCGAATGGTTGGAGG 58.697 55.000 0.00 0.00 0.00 4.30
1951 2161 2.920227 GCAGCCGACATCTCGAAGATAG 60.920 54.545 0.00 0.00 43.06 2.08
1997 2207 0.038310 CTCCCCCAGTTTCACCTTCC 59.962 60.000 0.00 0.00 0.00 3.46
2021 2231 6.414079 CGATAAGCAGCACAACTACATAAAG 58.586 40.000 0.00 0.00 0.00 1.85
2036 2246 7.280356 ACTACATAAAGTTGGTCTTGACTGTT 58.720 34.615 0.61 0.00 36.40 3.16
2096 2306 3.942829 TCTGATTTTCTACTGCTGTGGG 58.057 45.455 6.48 0.00 0.00 4.61
2102 2312 0.692476 TCTACTGCTGTGGGTGCAAT 59.308 50.000 6.48 0.00 40.13 3.56
2130 2340 0.680280 GGTCTCTGTCGGTGAGCCTA 60.680 60.000 2.16 0.00 32.00 3.93
2198 2408 3.629398 GTGAGGCAATATCCCTTCTTGTG 59.371 47.826 0.00 0.00 31.41 3.33
2213 2423 5.355350 CCTTCTTGTGAACCTATGTTGGATC 59.645 44.000 0.00 0.00 33.97 3.36
2268 2478 1.830587 TTCATGCAGGCTCGTCACCT 61.831 55.000 0.00 0.00 38.35 4.00
2309 2519 2.941720 GTCAGCTTCACAAGGATGATCC 59.058 50.000 2.46 2.46 36.58 3.36
2320 2530 0.400525 GGATGATCCAGGGGTCAGGA 60.401 60.000 6.60 0.00 36.28 3.86
2395 2605 2.154462 CAACTGATGTGTCAACTCCCC 58.846 52.381 0.00 0.00 33.05 4.81
2409 2619 4.489771 CCCCCGCAAGCTACTGGG 62.490 72.222 9.57 9.57 41.56 4.45
3006 3220 4.840716 AGAGGACATTCAAGATGCTCTT 57.159 40.909 0.00 0.00 37.14 2.85
3007 3221 4.768583 AGAGGACATTCAAGATGCTCTTC 58.231 43.478 0.00 0.00 33.78 2.87
3090 3304 6.139048 TCATATGTGGAAAAGATGCATGTG 57.861 37.500 2.46 0.00 0.00 3.21
3091 3305 5.653330 TCATATGTGGAAAAGATGCATGTGT 59.347 36.000 2.46 0.00 0.00 3.72
3131 3347 6.041296 AGCATTTTCTGACATTTCCTTTCACT 59.959 34.615 0.00 0.00 0.00 3.41
3175 3391 6.544650 ACTTCCTAGACTACTTCTTGAGACA 58.455 40.000 0.00 0.00 35.55 3.41
3573 3789 3.773630 CGTGGTGGTGCTAACGCG 61.774 66.667 3.53 3.53 39.65 6.01
3634 3850 2.000447 GTGCCGATGGAAAGACTACAC 59.000 52.381 0.00 0.00 0.00 2.90
3669 3885 5.363868 TGTTGTCCAGGAGATTATTCGATCT 59.636 40.000 0.00 0.00 39.04 2.75
3682 3898 1.215382 CGATCTGAAGGTGTCCGCA 59.785 57.895 0.00 0.00 0.00 5.69
3707 3923 0.482446 AGGTTGGCCATGGAAAGTGA 59.518 50.000 18.40 0.00 37.19 3.41
3747 3963 4.363999 GAGATGATTCGAACGGATCTGTT 58.636 43.478 19.93 19.93 34.02 3.16
3811 4027 3.455910 TGTATCAGGGCTTAGCAGTGAAT 59.544 43.478 6.53 1.84 0.00 2.57
3867 4083 0.956633 ATGCTTTGTCTGCCAGTGTG 59.043 50.000 0.00 0.00 0.00 3.82
3882 4098 2.246739 TGTGTTGCAGCTCAGACGC 61.247 57.895 1.17 0.00 0.00 5.19
3906 4122 3.763897 AGTTGCTGAACACAAAGGAGTTT 59.236 39.130 0.00 0.00 34.17 2.66
3939 4155 4.122776 ACATGGCAACGATAGATGAGAAC 58.877 43.478 0.00 0.00 42.08 3.01
3942 4158 2.541762 GGCAACGATAGATGAGAACAGC 59.458 50.000 0.00 0.00 42.08 4.40
3962 4178 0.322546 GGATTCCACCGCTCTTTGGT 60.323 55.000 0.00 0.00 41.47 3.67
3972 4188 1.136721 CGCTCTTTGGTACGTTTCGTG 60.137 52.381 0.00 0.00 41.39 4.35
4047 4263 7.954835 TGAGATCATTGGTGAAGAAAACAATT 58.045 30.769 0.00 0.00 38.01 2.32
4516 4746 6.545504 TGCACTCATTTTCTAACTTGAGAC 57.454 37.500 5.84 0.00 38.25 3.36
4562 4792 7.703328 TCAGTTTTAATTCACAGTTTCCTGAC 58.297 34.615 0.00 0.00 41.50 3.51
4586 4816 8.121305 ACCAGATTGCAATGACTATTTTGTAA 57.879 30.769 18.59 0.00 33.12 2.41
4598 4828 8.145316 TGACTATTTTGTAAGCACGTAAAAGT 57.855 30.769 0.00 0.00 0.00 2.66
4718 4968 3.724508 ATGAGCCTCGATGAACAGTAG 57.275 47.619 0.00 0.00 0.00 2.57
4847 5101 8.331742 TGAAAGTTTGGATAAAAACAAAATCGC 58.668 29.630 0.00 0.00 41.56 4.58
5042 5310 5.600908 TCACAATAGCACTTTCGGTAAAC 57.399 39.130 0.00 0.00 0.00 2.01
5256 5764 9.636789 AACATCCAATCTATTCATCTTCAATCA 57.363 29.630 0.00 0.00 0.00 2.57
5257 5765 9.809395 ACATCCAATCTATTCATCTTCAATCAT 57.191 29.630 0.00 0.00 0.00 2.45
5259 5767 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
5260 5768 7.176165 TCCAATCTATTCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
5261 5769 7.039993 CCAATCTATTCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
5262 5770 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
5263 5771 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
5264 5772 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
5265 5773 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
5266 5774 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
5267 5775 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
5268 5776 6.124340 TCATCTTCAATCATGGCAGTACAAT 58.876 36.000 0.00 0.00 0.00 2.71
5269 5777 5.823209 TCTTCAATCATGGCAGTACAATG 57.177 39.130 0.00 0.00 0.00 2.82
5270 5778 5.499313 TCTTCAATCATGGCAGTACAATGA 58.501 37.500 0.00 0.00 0.00 2.57
5271 5779 5.945191 TCTTCAATCATGGCAGTACAATGAA 59.055 36.000 0.00 0.00 0.00 2.57
5272 5780 6.604396 TCTTCAATCATGGCAGTACAATGAAT 59.396 34.615 0.00 0.00 0.00 2.57
5273 5781 7.774625 TCTTCAATCATGGCAGTACAATGAATA 59.225 33.333 0.00 0.00 0.00 1.75
5274 5782 7.263100 TCAATCATGGCAGTACAATGAATAC 57.737 36.000 0.00 0.00 0.00 1.89
5275 5783 6.262944 TCAATCATGGCAGTACAATGAATACC 59.737 38.462 0.00 0.00 0.00 2.73
5276 5784 5.109500 TCATGGCAGTACAATGAATACCA 57.891 39.130 0.00 0.00 0.00 3.25
5277 5785 5.125356 TCATGGCAGTACAATGAATACCAG 58.875 41.667 0.00 0.00 0.00 4.00
5278 5786 4.835284 TGGCAGTACAATGAATACCAGA 57.165 40.909 0.00 0.00 0.00 3.86
5279 5787 5.172687 TGGCAGTACAATGAATACCAGAA 57.827 39.130 0.00 0.00 0.00 3.02
5280 5788 5.565509 TGGCAGTACAATGAATACCAGAAA 58.434 37.500 0.00 0.00 0.00 2.52
5281 5789 6.186957 TGGCAGTACAATGAATACCAGAAAT 58.813 36.000 0.00 0.00 0.00 2.17
5282 5790 7.342581 TGGCAGTACAATGAATACCAGAAATA 58.657 34.615 0.00 0.00 0.00 1.40
5283 5791 7.831690 TGGCAGTACAATGAATACCAGAAATAA 59.168 33.333 0.00 0.00 0.00 1.40
5284 5792 8.682710 GGCAGTACAATGAATACCAGAAATAAA 58.317 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.637196 AAAACTACTCCCATTTCTTTCCTAAG 57.363 34.615 0.00 0.00 0.00 2.18
75 78 5.752955 GCTGAGCTATCACTTTCTCCTAAAG 59.247 44.000 0.00 0.00 0.00 1.85
79 82 3.373830 AGCTGAGCTATCACTTTCTCCT 58.626 45.455 4.49 0.00 36.99 3.69
124 129 3.992317 GAGCCCGGGCCTATCGAC 61.992 72.222 41.72 19.48 43.17 4.20
156 161 1.338136 ACCCATCCCTTGTCGGCTAG 61.338 60.000 0.00 0.00 0.00 3.42
157 162 0.031917 TACCCATCCCTTGTCGGCTA 60.032 55.000 0.00 0.00 0.00 3.93
158 163 0.694444 ATACCCATCCCTTGTCGGCT 60.694 55.000 0.00 0.00 0.00 5.52
159 164 0.182775 AATACCCATCCCTTGTCGGC 59.817 55.000 0.00 0.00 0.00 5.54
163 168 3.336694 ACTCCAAAATACCCATCCCTTGT 59.663 43.478 0.00 0.00 0.00 3.16
165 170 3.052869 GGACTCCAAAATACCCATCCCTT 60.053 47.826 0.00 0.00 0.00 3.95
166 171 2.514160 GGACTCCAAAATACCCATCCCT 59.486 50.000 0.00 0.00 0.00 4.20
167 172 2.243736 TGGACTCCAAAATACCCATCCC 59.756 50.000 0.00 0.00 0.00 3.85
168 173 3.555966 CTGGACTCCAAAATACCCATCC 58.444 50.000 0.00 0.00 30.80 3.51
169 174 2.952310 GCTGGACTCCAAAATACCCATC 59.048 50.000 0.00 0.00 30.80 3.51
170 175 2.683742 CGCTGGACTCCAAAATACCCAT 60.684 50.000 0.00 0.00 30.80 4.00
171 176 1.339631 CGCTGGACTCCAAAATACCCA 60.340 52.381 0.00 0.00 30.80 4.51
172 177 1.379527 CGCTGGACTCCAAAATACCC 58.620 55.000 0.00 0.00 30.80 3.69
173 178 1.379527 CCGCTGGACTCCAAAATACC 58.620 55.000 0.00 0.00 30.80 2.73
174 179 1.339727 ACCCGCTGGACTCCAAAATAC 60.340 52.381 0.00 0.00 30.80 1.89
175 180 0.988832 ACCCGCTGGACTCCAAAATA 59.011 50.000 0.00 0.00 30.80 1.40
177 182 1.072505 GACCCGCTGGACTCCAAAA 59.927 57.895 0.00 0.00 30.80 2.44
178 183 1.701031 TTGACCCGCTGGACTCCAAA 61.701 55.000 0.00 0.00 30.80 3.28
329 352 1.679898 GTTGACTGGGGAGGAGGTG 59.320 63.158 0.00 0.00 0.00 4.00
331 354 2.982130 CGTTGACTGGGGAGGAGG 59.018 66.667 0.00 0.00 0.00 4.30
359 390 2.151202 GATCAAGCGGTGAGGTGAAAA 58.849 47.619 0.00 0.00 40.43 2.29
360 391 1.347707 AGATCAAGCGGTGAGGTGAAA 59.652 47.619 0.00 0.00 40.43 2.69
362 393 0.532573 GAGATCAAGCGGTGAGGTGA 59.467 55.000 0.00 0.00 40.43 4.02
363 394 0.460987 GGAGATCAAGCGGTGAGGTG 60.461 60.000 0.00 0.00 40.43 4.00
364 395 1.617947 GGGAGATCAAGCGGTGAGGT 61.618 60.000 0.00 0.00 40.43 3.85
365 396 1.144936 GGGAGATCAAGCGGTGAGG 59.855 63.158 0.00 0.00 40.43 3.86
366 397 1.227089 CGGGAGATCAAGCGGTGAG 60.227 63.158 0.00 0.00 40.43 3.51
377 541 3.005539 ACTGCTGCCACGGGAGAT 61.006 61.111 9.03 0.00 35.50 2.75
418 583 2.354072 GATTCCGCTCGAGCTCGG 60.354 66.667 33.98 26.88 46.52 4.63
456 621 3.190849 CGCTCGTGGCCTCATGTG 61.191 66.667 3.32 0.00 37.74 3.21
457 622 4.457496 CCGCTCGTGGCCTCATGT 62.457 66.667 3.32 0.00 37.74 3.21
513 681 1.673337 GTACGAAAAAGGCGGGGCT 60.673 57.895 0.00 0.00 0.00 5.19
516 684 0.715551 GTACGTACGAAAAAGGCGGG 59.284 55.000 24.41 0.00 0.00 6.13
528 696 2.721129 AACTAGCGCTACGTACGTAC 57.279 50.000 23.60 15.90 0.00 3.67
529 697 2.930040 AGAAACTAGCGCTACGTACGTA 59.070 45.455 25.41 25.41 0.00 3.57
530 698 1.734465 AGAAACTAGCGCTACGTACGT 59.266 47.619 25.98 25.98 0.00 3.57
531 699 2.030213 AGAGAAACTAGCGCTACGTACG 59.970 50.000 14.45 15.01 0.00 3.67
532 700 3.672028 AGAGAAACTAGCGCTACGTAC 57.328 47.619 14.45 12.67 0.00 3.67
533 701 3.064545 GGAAGAGAAACTAGCGCTACGTA 59.935 47.826 14.45 0.00 0.00 3.57
534 702 2.159407 GGAAGAGAAACTAGCGCTACGT 60.159 50.000 14.45 12.97 0.00 3.57
535 703 2.097791 AGGAAGAGAAACTAGCGCTACG 59.902 50.000 14.45 12.31 0.00 3.51
536 704 3.489568 GGAGGAAGAGAAACTAGCGCTAC 60.490 52.174 14.45 3.57 0.00 3.58
537 705 2.688958 GGAGGAAGAGAAACTAGCGCTA 59.311 50.000 17.75 17.75 0.00 4.26
538 706 1.478916 GGAGGAAGAGAAACTAGCGCT 59.521 52.381 17.26 17.26 0.00 5.92
540 708 2.104170 AGGGAGGAAGAGAAACTAGCG 58.896 52.381 0.00 0.00 0.00 4.26
542 710 4.358214 AGGAAGGGAGGAAGAGAAACTAG 58.642 47.826 0.00 0.00 0.00 2.57
632 806 2.038007 AGGAAGAGCAGGCGGAGA 59.962 61.111 0.00 0.00 0.00 3.71
634 808 1.687146 ATGAGGAAGAGCAGGCGGA 60.687 57.895 0.00 0.00 0.00 5.54
635 809 1.523258 CATGAGGAAGAGCAGGCGG 60.523 63.158 0.00 0.00 0.00 6.13
636 810 2.178890 GCATGAGGAAGAGCAGGCG 61.179 63.158 0.00 0.00 31.97 5.52
637 811 0.814812 GAGCATGAGGAAGAGCAGGC 60.815 60.000 0.00 0.00 41.65 4.85
639 813 1.942677 CAGAGCATGAGGAAGAGCAG 58.057 55.000 0.00 0.00 0.00 4.24
640 814 0.107800 GCAGAGCATGAGGAAGAGCA 60.108 55.000 0.00 0.00 0.00 4.26
648 836 3.200593 GCACCCGCAGAGCATGAG 61.201 66.667 0.00 0.00 38.36 2.90
699 887 7.346175 TGTGGATGCCTATTTTCCTTACTACTA 59.654 37.037 0.00 0.00 0.00 1.82
704 892 6.064717 AGATGTGGATGCCTATTTTCCTTAC 58.935 40.000 0.00 0.00 0.00 2.34
705 893 6.266131 AGATGTGGATGCCTATTTTCCTTA 57.734 37.500 0.00 0.00 0.00 2.69
708 896 4.500375 GCAAGATGTGGATGCCTATTTTCC 60.500 45.833 0.00 0.00 34.03 3.13
709 897 4.614946 GCAAGATGTGGATGCCTATTTTC 58.385 43.478 0.00 0.00 34.03 2.29
710 898 4.660789 GCAAGATGTGGATGCCTATTTT 57.339 40.909 0.00 0.00 34.03 1.82
717 905 4.389890 TTTTATGGCAAGATGTGGATGC 57.610 40.909 0.00 0.00 39.33 3.91
725 913 4.915085 CGTTCGTTGTTTTTATGGCAAGAT 59.085 37.500 0.00 0.00 0.00 2.40
831 1022 3.185594 CGTTCGTTTTATGGAGCACTGAA 59.814 43.478 0.00 0.00 0.00 3.02
832 1023 2.734606 CGTTCGTTTTATGGAGCACTGA 59.265 45.455 0.00 0.00 0.00 3.41
833 1024 2.159707 CCGTTCGTTTTATGGAGCACTG 60.160 50.000 0.00 0.00 0.00 3.66
844 1035 2.483197 GGTGGGTGCCGTTCGTTTT 61.483 57.895 0.00 0.00 0.00 2.43
845 1036 2.903350 GGTGGGTGCCGTTCGTTT 60.903 61.111 0.00 0.00 0.00 3.60
864 1055 2.417936 GGAATCGCCGAGGAGGAC 59.582 66.667 0.00 0.00 45.00 3.85
897 1088 7.126421 AGAGAGAGAGGAGGATCACTATATCTC 59.874 44.444 16.30 16.30 39.75 2.75
906 1097 3.630168 CAACAGAGAGAGAGGAGGATCA 58.370 50.000 0.00 0.00 36.25 2.92
920 1111 3.114616 CACGGAGCGGCAACAGAG 61.115 66.667 1.45 0.00 0.00 3.35
922 1113 3.114616 CTCACGGAGCGGCAACAG 61.115 66.667 1.45 0.00 0.00 3.16
930 1121 3.119096 GTTTCGCCCTCACGGAGC 61.119 66.667 0.00 0.00 0.00 4.70
953 1144 2.299867 CTCCCAAAACCCACCATCTTTG 59.700 50.000 0.00 0.00 0.00 2.77
1023 1214 2.736995 GCCGCTACGAACAGCACA 60.737 61.111 8.64 0.00 41.88 4.57
1083 1274 0.033920 AAGCAGACGAGACATGCACA 59.966 50.000 0.00 0.00 42.45 4.57
1114 1305 1.905894 AGAGGTGGAAGAAGAAGAGGC 59.094 52.381 0.00 0.00 0.00 4.70
1128 1319 0.617249 AAGAGGGAGGAGCAGAGGTG 60.617 60.000 0.00 0.00 0.00 4.00
1143 1334 1.649664 CATCCAGAACCAGCGAAGAG 58.350 55.000 0.00 0.00 0.00 2.85
1149 1340 0.179006 GATCCCCATCCAGAACCAGC 60.179 60.000 0.00 0.00 0.00 4.85
1187 1378 2.877866 ACATCGGTCCCTATCCTACAG 58.122 52.381 0.00 0.00 0.00 2.74
1244 1435 8.274248 GGACTCGTACTCAAAAGTTCTTTTAAG 58.726 37.037 9.70 8.10 36.92 1.85
1249 1440 4.344390 AGGGACTCGTACTCAAAAGTTCTT 59.656 41.667 0.00 0.00 36.92 2.52
1251 1442 4.254402 AGGGACTCGTACTCAAAAGTTC 57.746 45.455 0.00 0.00 36.92 3.01
1291 1483 4.822896 TGAGTAAACAACAACGGCCTAATT 59.177 37.500 0.00 0.00 0.00 1.40
1293 1485 3.560896 GTGAGTAAACAACAACGGCCTAA 59.439 43.478 0.00 0.00 0.00 2.69
1300 1492 4.654015 TCTTTGCGTGAGTAAACAACAAC 58.346 39.130 0.00 0.00 40.76 3.32
1301 1493 4.393680 ACTCTTTGCGTGAGTAAACAACAA 59.606 37.500 4.58 0.00 42.28 2.83
1315 1507 4.990543 TGTTGAACTGATACTCTTTGCG 57.009 40.909 0.00 0.00 0.00 4.85
1333 1525 3.005155 GCTCATGCTGGAAAGTTCTTGTT 59.995 43.478 0.00 0.00 36.03 2.83
1345 1537 1.015109 GTCTGTGATGCTCATGCTGG 58.985 55.000 0.00 0.00 40.48 4.85
1363 1555 4.654262 TGACTAGAAAGGTCCAGAAACAGT 59.346 41.667 0.00 0.00 33.22 3.55
1389 1581 9.236006 AGTGATGAGTGCTAATTGACTAAAAAT 57.764 29.630 0.00 0.00 0.00 1.82
1390 1582 8.621532 AGTGATGAGTGCTAATTGACTAAAAA 57.378 30.769 0.00 0.00 0.00 1.94
1440 1632 8.969121 TGTAAGCAAATTGAACATATTCTGTG 57.031 30.769 0.00 0.00 38.39 3.66
1451 1643 7.526608 CGAGGATTACTTGTAAGCAAATTGAA 58.473 34.615 10.32 0.00 33.73 2.69
1455 1647 4.335594 GGCGAGGATTACTTGTAAGCAAAT 59.664 41.667 10.32 0.00 33.73 2.32
1461 1653 3.598019 AACGGCGAGGATTACTTGTAA 57.402 42.857 16.62 0.00 32.77 2.41
1476 1668 1.001815 TCAGCAAACTTAGCAAACGGC 60.002 47.619 0.00 0.00 45.30 5.68
1478 1670 4.209452 TCTTCAGCAAACTTAGCAAACG 57.791 40.909 0.00 0.00 0.00 3.60
1578 1770 2.202756 CTCCTCCGCGCCAACTAC 60.203 66.667 0.00 0.00 0.00 2.73
1615 1825 0.097674 CTTTGAAGAATGGCTCGGCG 59.902 55.000 0.00 0.00 0.00 6.46
1667 1877 1.151810 AGGTGGAAGAAGGGCCAGA 60.152 57.895 6.18 0.00 34.22 3.86
1860 2070 2.739379 GAGAAAGAGGAAACGGAGCTTG 59.261 50.000 0.00 0.00 0.00 4.01
1867 2077 2.030185 TCCGTCAGAGAAAGAGGAAACG 60.030 50.000 0.00 0.00 0.00 3.60
1951 2161 1.493311 CGACGCTTCTTTGCAGGTC 59.507 57.895 0.00 0.00 0.00 3.85
1982 2192 3.270877 CTTATCGGAAGGTGAAACTGGG 58.729 50.000 0.00 0.00 36.74 4.45
1997 2207 5.966636 TTATGTAGTTGTGCTGCTTATCG 57.033 39.130 0.00 0.00 0.00 2.92
2021 2231 2.017049 AGCACAACAGTCAAGACCAAC 58.983 47.619 0.00 0.00 0.00 3.77
2054 2264 2.907910 ATGCAGCAATGAACGAGAAC 57.092 45.000 0.00 0.00 0.00 3.01
2096 2306 3.373439 CAGAGACCTTGCTCTTATTGCAC 59.627 47.826 0.00 0.00 42.41 4.57
2102 2312 1.819288 CCGACAGAGACCTTGCTCTTA 59.181 52.381 0.00 0.00 42.41 2.10
2130 2340 4.405358 GTGAAGAAGAGGATGGTCATCTCT 59.595 45.833 10.34 8.39 36.39 3.10
2198 2408 4.332819 CCAAGAACGATCCAACATAGGTTC 59.667 45.833 0.00 0.00 34.21 3.62
2213 2423 7.962964 ATGATATAATACCACACCAAGAACG 57.037 36.000 0.00 0.00 0.00 3.95
2268 2478 1.138859 CTGGAGGATGCACGGATAACA 59.861 52.381 0.00 0.00 28.70 2.41
2309 2519 1.834263 CCTTAGAAGTCCTGACCCCTG 59.166 57.143 0.00 0.00 0.00 4.45
2320 2530 3.310652 GCCTCCGGCCTTAGAAGT 58.689 61.111 0.00 0.00 44.06 3.01
2395 2605 2.966732 TTCCCCCAGTAGCTTGCGG 61.967 63.158 0.00 0.00 0.00 5.69
2409 2619 2.752903 ACTTGTGTTGTTCTGTGTTCCC 59.247 45.455 0.00 0.00 0.00 3.97
2557 2770 3.134623 TGACTTGACTCAACAGGTGACAT 59.865 43.478 0.00 0.00 30.57 3.06
2803 3016 2.605338 CCTCGTTCACACTGCAAAATGG 60.605 50.000 0.00 0.00 0.00 3.16
3006 3220 3.069016 TGAACGAACAGCTACCTTCAAGA 59.931 43.478 0.00 0.00 0.00 3.02
3007 3221 3.390135 TGAACGAACAGCTACCTTCAAG 58.610 45.455 0.00 0.00 0.00 3.02
3049 3263 8.727910 CACATATGAATAAGCAAGCTACATGAT 58.272 33.333 10.38 0.00 0.00 2.45
3097 3313 5.063180 TGTCAGAAAATGCTGCCTTTATG 57.937 39.130 3.35 7.72 35.86 1.90
3112 3328 6.122277 ACAGAAGTGAAAGGAAATGTCAGAA 58.878 36.000 0.00 0.00 0.00 3.02
3131 3347 7.162082 GGAAGTTCATTTCCTAGAGAACAGAA 58.838 38.462 5.01 0.00 42.73 3.02
3175 3391 8.809066 TCATCATTTGGTTTCATTCTCAAGATT 58.191 29.630 0.00 0.00 0.00 2.40
3256 3472 2.508526 AGTGCCTTCATGACTTGTTCC 58.491 47.619 0.00 0.00 0.00 3.62
3573 3789 3.945285 TCAGAAGGGTGTCAAGTTTGAAC 59.055 43.478 0.00 0.00 39.21 3.18
3634 3850 2.033801 CCTGGACAACAAAGTGAAGCAG 59.966 50.000 0.00 0.00 0.00 4.24
3669 3885 0.749818 TTGCTTTGCGGACACCTTCA 60.750 50.000 0.00 0.00 0.00 3.02
3682 3898 0.471591 TCCATGGCCAACCTTGCTTT 60.472 50.000 10.96 0.00 39.30 3.51
3707 3923 3.318313 TCTCCTGAAGGTTGAGTCCTTT 58.682 45.455 0.00 0.00 46.38 3.11
3747 3963 4.270834 AGTAGTACTCGCCATCTTCTTGA 58.729 43.478 0.00 0.00 0.00 3.02
3846 4062 0.524862 CACTGGCAGACAAAGCATCC 59.475 55.000 23.66 0.00 0.00 3.51
3867 4083 2.724708 CTCGCGTCTGAGCTGCAAC 61.725 63.158 5.77 0.00 34.40 4.17
3882 4098 1.939934 TCCTTTGTGTTCAGCAACTCG 59.060 47.619 0.00 0.00 33.17 4.18
3906 4122 2.771089 GTTGCCATGTCAGAGTTCAGA 58.229 47.619 0.00 0.00 0.00 3.27
3957 4173 2.625737 TGTTCCACGAAACGTACCAAA 58.374 42.857 0.00 0.00 38.32 3.28
3958 4174 2.306341 TGTTCCACGAAACGTACCAA 57.694 45.000 0.00 0.00 38.32 3.67
3962 4178 1.795872 CTGCATGTTCCACGAAACGTA 59.204 47.619 0.00 0.00 38.32 3.57
3972 4188 2.941720 GGTCTCATTCTCTGCATGTTCC 59.058 50.000 0.00 0.00 0.00 3.62
4047 4263 3.613494 TCGTTTCCATGGAAATACCGA 57.387 42.857 36.08 33.59 44.52 4.69
4479 4709 4.365899 TGAGTGCATGAATTTCATCAGC 57.634 40.909 8.95 11.00 34.28 4.26
4562 4792 7.221452 GCTTACAAAATAGTCATTGCAATCTGG 59.779 37.037 9.53 0.00 0.00 3.86
4655 4905 3.119280 TCCGCGTCTCACATATTTTCAGA 60.119 43.478 4.92 0.00 0.00 3.27
4784 5036 7.559533 ACCATCACAAATATTTACATGCTGGTA 59.440 33.333 21.56 2.29 0.00 3.25
4788 5040 9.353431 TGATACCATCACAAATATTTACATGCT 57.647 29.630 0.00 0.00 33.59 3.79
4847 5101 1.028905 TCACAACCTTTTTGGAGCGG 58.971 50.000 0.00 0.00 39.71 5.52
4998 5256 2.346847 GCACGAGCTTAGATGAACAGTG 59.653 50.000 0.00 0.00 37.91 3.66
5035 5303 6.088883 GCACCAAAATAATGACAAGTTTACCG 59.911 38.462 0.00 0.00 0.00 4.02
5042 5310 9.590451 AATTATGAGCACCAAAATAATGACAAG 57.410 29.630 0.00 0.00 0.00 3.16
5230 5738 9.636789 TGATTGAAGATGAATAGATTGGATGTT 57.363 29.630 0.00 0.00 0.00 2.71
5231 5739 9.809395 ATGATTGAAGATGAATAGATTGGATGT 57.191 29.630 0.00 0.00 0.00 3.06
5233 5741 9.244292 CCATGATTGAAGATGAATAGATTGGAT 57.756 33.333 0.00 0.00 0.00 3.41
5234 5742 7.176165 GCCATGATTGAAGATGAATAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
5235 5743 7.039993 TGCCATGATTGAAGATGAATAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
5236 5744 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
5237 5745 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
5238 5746 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
5239 5747 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
5240 5748 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
5241 5749 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
5242 5750 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
5243 5751 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
5244 5752 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
5245 5753 5.823209 TTGTACTGCCATGATTGAAGATG 57.177 39.130 0.00 0.00 0.00 2.90
5246 5754 6.124340 TCATTGTACTGCCATGATTGAAGAT 58.876 36.000 0.00 0.00 0.00 2.40
5247 5755 5.499313 TCATTGTACTGCCATGATTGAAGA 58.501 37.500 0.00 0.00 0.00 2.87
5248 5756 5.823209 TCATTGTACTGCCATGATTGAAG 57.177 39.130 0.00 0.00 0.00 3.02
5249 5757 6.778834 ATTCATTGTACTGCCATGATTGAA 57.221 33.333 0.00 0.00 0.00 2.69
5250 5758 6.262944 GGTATTCATTGTACTGCCATGATTGA 59.737 38.462 0.00 0.00 0.00 2.57
5251 5759 6.039605 TGGTATTCATTGTACTGCCATGATTG 59.960 38.462 0.00 0.00 0.00 2.67
5252 5760 6.128486 TGGTATTCATTGTACTGCCATGATT 58.872 36.000 0.00 0.00 0.00 2.57
5253 5761 5.693961 TGGTATTCATTGTACTGCCATGAT 58.306 37.500 0.00 0.00 0.00 2.45
5254 5762 5.104569 TCTGGTATTCATTGTACTGCCATGA 60.105 40.000 0.00 0.00 0.00 3.07
5255 5763 5.125356 TCTGGTATTCATTGTACTGCCATG 58.875 41.667 0.00 0.00 0.00 3.66
5256 5764 5.372343 TCTGGTATTCATTGTACTGCCAT 57.628 39.130 0.00 0.00 0.00 4.40
5257 5765 4.835284 TCTGGTATTCATTGTACTGCCA 57.165 40.909 0.00 0.00 0.00 4.92
5258 5766 6.699575 ATTTCTGGTATTCATTGTACTGCC 57.300 37.500 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.