AutoCloner

Multiple sequence alignment - TraesCS6B01G163000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G163000	chr6B	100.000	3239	0	0	1	3239	169237548	169234310	0.000000e+00	5982.0
1	TraesCS6B01G163000	chr6B	83.765	1466	210	16	962	2407	179470032	179468575	0.000000e+00	1363.0
2	TraesCS6B01G163000	chr6B	78.741	1303	246	21	1044	2326	169177001	169175710	0.000000e+00	843.0
3	TraesCS6B01G163000	chr6D	92.126	1816	83	16	950	2717	88892106	88890303	0.000000e+00	2507.0
4	TraesCS6B01G163000	chr6D	83.778	1461	216	14	964	2407	93524706	93526162	0.000000e+00	1365.0
5	TraesCS6B01G163000	chr6D	80.186	1287	227	15	1044	2309	88837044	88835765	0.000000e+00	939.0
6	TraesCS6B01G163000	chr6D	89.228	492	47	3	2754	3239	88890117	88889626	7.680000e-171	610.0
7	TraesCS6B01G163000	chr6D	75.873	315	45	17	2425	2717	93526346	93526651	7.290000e-27	132.0
8	TraesCS6B01G163000	chr6A	95.939	1379	55	1	950	2327	106986308	106984930	0.000000e+00	2235.0
9	TraesCS6B01G163000	chr6A	84.492	1367	191	13	964	2315	115281347	115279987	0.000000e+00	1330.0
10	TraesCS6B01G163000	chr6A	79.407	1248	230	17	1044	2273	106895387	106894149	0.000000e+00	856.0
11	TraesCS6B01G163000	chr6A	88.421	285	30	2	2949	3232	106983168	106982886	1.110000e-89	340.0
12	TraesCS6B01G163000	chr6A	87.417	302	22	6	2427	2717	106984443	106984147	1.860000e-87	333.0
13	TraesCS6B01G163000	chr6A	91.892	74	3	3	2754	2825	106983727	106983655	2.060000e-17	100.0
14	TraesCS6B01G163000	chr6A	97.619	42	1	0	2383	2424	106984508	106984467	4.480000e-09	73.1
15	TraesCS6B01G163000	chr2B	95.652	943	41	0	1	943	153888809	153887867	0.000000e+00	1515.0
16	TraesCS6B01G163000	chrUn	91.958	945	70	5	1	943	40586203	40585263	0.000000e+00	1319.0
17	TraesCS6B01G163000	chrUn	91.640	945	73	5	1	943	215032409	215033349	0.000000e+00	1303.0
18	TraesCS6B01G163000	chr5D	91.791	938	75	2	1	938	61867724	61868659	0.000000e+00	1304.0
19	TraesCS6B01G163000	chr5D	90.698	946	83	5	1	945	325660001	325659060	0.000000e+00	1254.0
20	TraesCS6B01G163000	chr5D	93.878	49	3	0	2167	2215	432805603	432805555	1.250000e-09	75.0
21	TraesCS6B01G163000	chr5D	90.566	53	5	0	2155	2207	432996454	432996506	1.610000e-08	71.3
22	TraesCS6B01G163000	chr1B	91.272	951	75	7	1	948	121841554	121842499	0.000000e+00	1290.0
23	TraesCS6B01G163000	chr1B	75.824	455	103	5	1042	1491	395277468	395277016	1.170000e-54	224.0
24	TraesCS6B01G163000	chr2D	90.571	753	68	3	1	751	388090691	388089940	0.000000e+00	994.0
25	TraesCS6B01G163000	chr4D	84.947	950	128	15	2	944	380559374	380558433	0.000000e+00	948.0
26	TraesCS6B01G163000	chr4D	84.516	930	133	11	19	943	53480231	53481154	0.000000e+00	909.0
27	TraesCS6B01G163000	chr7D	85.714	819	106	11	1	814	568945225	568946037	0.000000e+00	854.0
28	TraesCS6B01G163000	chr3A	79.623	265	44	10	690	949	265174912	265174653	7.140000e-42	182.0
29	TraesCS6B01G163000	chr5A	89.474	57	6	0	2155	2211	547552282	547552338	4.480000e-09	73.1
30	TraesCS6B01G163000	chr5B	90.566	53	5	0	2155	2207	526519015	526519067	1.610000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G163000	chr6B	169234310	169237548	3238	True	5982.00	5982	100.0000	1	3239	1	chr6B.!!$R2	3238
1	TraesCS6B01G163000	chr6B	179468575	179470032	1457	True	1363.00	1363	83.7650	962	2407	1	chr6B.!!$R3	1445
2	TraesCS6B01G163000	chr6B	169175710	169177001	1291	True	843.00	843	78.7410	1044	2326	1	chr6B.!!$R1	1282
3	TraesCS6B01G163000	chr6D	88889626	88892106	2480	True	1558.50	2507	90.6770	950	3239	2	chr6D.!!$R2	2289
4	TraesCS6B01G163000	chr6D	88835765	88837044	1279	True	939.00	939	80.1860	1044	2309	1	chr6D.!!$R1	1265
5	TraesCS6B01G163000	chr6D	93524706	93526651	1945	False	748.50	1365	79.8255	964	2717	2	chr6D.!!$F1	1753
6	TraesCS6B01G163000	chr6A	115279987	115281347	1360	True	1330.00	1330	84.4920	964	2315	1	chr6A.!!$R2	1351
7	TraesCS6B01G163000	chr6A	106894149	106895387	1238	True	856.00	856	79.4070	1044	2273	1	chr6A.!!$R1	1229
8	TraesCS6B01G163000	chr6A	106982886	106986308	3422	True	616.22	2235	92.2576	950	3232	5	chr6A.!!$R3	2282
9	TraesCS6B01G163000	chr2B	153887867	153888809	942	True	1515.00	1515	95.6520	1	943	1	chr2B.!!$R1	942
10	TraesCS6B01G163000	chrUn	40585263	40586203	940	True	1319.00	1319	91.9580	1	943	1	chrUn.!!$R1	942
11	TraesCS6B01G163000	chrUn	215032409	215033349	940	False	1303.00	1303	91.6400	1	943	1	chrUn.!!$F1	942
12	TraesCS6B01G163000	chr5D	61867724	61868659	935	False	1304.00	1304	91.7910	1	938	1	chr5D.!!$F1	937
13	TraesCS6B01G163000	chr5D	325659060	325660001	941	True	1254.00	1254	90.6980	1	945	1	chr5D.!!$R1	944
14	TraesCS6B01G163000	chr1B	121841554	121842499	945	False	1290.00	1290	91.2720	1	948	1	chr1B.!!$F1	947
15	TraesCS6B01G163000	chr2D	388089940	388090691	751	True	994.00	994	90.5710	1	751	1	chr2D.!!$R1	750
16	TraesCS6B01G163000	chr4D	380558433	380559374	941	True	948.00	948	84.9470	2	944	1	chr4D.!!$R1	942
17	TraesCS6B01G163000	chr4D	53480231	53481154	923	False	909.00	909	84.5160	19	943	1	chr4D.!!$F1	924
18	TraesCS6B01G163000	chr7D	568945225	568946037	812	False	854.00	854	85.7140	1	814	1	chr7D.!!$F1	813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
726	732	0.107410	TGTCGCAGGAGTTGGTGTTT	60.107	50.0	0.00	0.00	0.0	2.83	F
1425	1448	0.178921	TCCTCCTCCAGAACTGCAGT	60.179	55.0	15.25	15.25	0.0	4.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1830	1858	1.140852	TCGCCAACCCTGAATATGAGG	59.859	52.381	0.0	0.0	0.0	3.86	R
2888	4277	2.089980	CCAGAGCATTCCTTTGTCCTG	58.910	52.381	0.0	0.0	0.0	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
90	91	2.669133	CCTTGGAGTGGGCGATGGA	61.669	63.158	0.00	0.00	0.00	3.41
134	135	2.606587	GGAGGTGTGGGATGGCTGT	61.607	63.158	0.00	0.00	0.00	4.40
195	197	1.300620	CTCCTTGCCGTGTGTTCGA	60.301	57.895	0.00	0.00	0.00	3.71
233	235	1.787847	CAGCTACGTTTGGCGAAGG	59.212	57.895	5.64	5.64	44.77	3.46
333	335	3.476552	TGAAAATCTTGCACGACTTCCT	58.523	40.909	11.93	0.00	0.00	3.36
440	444	1.458777	AGTTGTGGTGGTCTCCGGA	60.459	57.895	2.93	2.93	0.00	5.14
502	506	2.504244	CGACGTCGTTCCTCTGCC	60.504	66.667	29.08	0.00	34.11	4.85
519	523	0.874390	GCCGAGAGCATTGTGTTTGA	59.126	50.000	0.00	0.00	42.97	2.69
585	589	1.220206	CTCCTTGATGCTCTGCGGT	59.780	57.895	0.00	0.00	0.00	5.68
604	608	2.719979	CTATGTACGCCCGTCGCT	59.280	61.111	0.00	0.00	43.23	4.93
673	679	2.303022	CCCACTTGCCACTTCTTCTAGA	59.697	50.000	0.00	0.00	0.00	2.43
726	732	0.107410	TGTCGCAGGAGTTGGTGTTT	60.107	50.000	0.00	0.00	0.00	2.83
834	841	1.877443	GCCGTCTTTAGTTTGGCTTCA	59.123	47.619	0.00	0.00	42.44	3.02
849	856	1.742831	GCTTCAGTGTGGTGTTTGTGA	59.257	47.619	0.00	0.00	0.00	3.58
860	867	5.532779	TGTGGTGTTTGTGATATGCTTGTTA	59.467	36.000	0.00	0.00	0.00	2.41
1018	1026	1.305465	ATGGCCTGGCAGCAATCAA	60.305	52.632	22.05	0.00	0.00	2.57
1019	1027	0.905809	ATGGCCTGGCAGCAATCAAA	60.906	50.000	22.05	0.00	0.00	2.69
1338	1349	2.106683	CGGCGCCGATTTCTTCCTT	61.107	57.895	44.86	0.00	42.83	3.36
1425	1448	0.178921	TCCTCCTCCAGAACTGCAGT	60.179	55.000	15.25	15.25	0.00	4.40
1460	1483	1.053424	GTCTACAACCCCCTCACACA	58.947	55.000	0.00	0.00	0.00	3.72
1507	1530	1.130749	CCGACAAGATCTTCGACGACT	59.869	52.381	16.58	0.00	37.43	4.18
1558	1584	4.323945	GCTATATCCTCTCCTCCGAAGAGA	60.324	50.000	1.78	0.00	43.39	3.10
1749	1777	5.456548	TCGTCTACTGGATACACACAAAA	57.543	39.130	0.00	0.00	46.17	2.44
1758	1786	5.815581	TGGATACACACAAAAGAAGCCTAT	58.184	37.500	0.00	0.00	46.17	2.57
1762	1790	7.934120	GGATACACACAAAAGAAGCCTATATCT	59.066	37.037	0.00	0.00	0.00	1.98
1797	1825	3.613193	CGACGACACTACATTTCTCCCAA	60.613	47.826	0.00	0.00	0.00	4.12
1878	1906	0.899720	ATGGGAAGCCTTGCATTGTG	59.100	50.000	0.00	0.00	0.00	3.33
1881	1909	0.675633	GGAAGCCTTGCATTGTGTGT	59.324	50.000	0.00	0.00	0.00	3.72
1897	1925	5.850557	TGTGTGTCCAATTGATTTTGAGT	57.149	34.783	7.12	0.00	0.00	3.41
1973	2007	1.071699	CCAGAGGTTTCCGTTGGAGAA	59.928	52.381	5.97	0.00	35.09	2.87
1990	2024	2.231478	GAGAAGATTGTCGAGGTCACCA	59.769	50.000	0.00	0.00	0.00	4.17
2007	2041	3.646162	TCACCAAGAGTACACTTGTGGAT	59.354	43.478	25.18	10.13	43.72	3.41
2088	2122	7.605410	GGAAACGTTCCTTGATAGTCATAAA	57.395	36.000	0.00	0.00	46.57	1.40
2089	2123	8.209917	GGAAACGTTCCTTGATAGTCATAAAT	57.790	34.615	0.00	0.00	46.57	1.40
2204	2238	3.484407	CATGGCCTCCTTCTTTGATAGG	58.516	50.000	3.32	0.00	0.00	2.57
2315	2357	9.048446	GTGTTGTCCAGTAGTGTTATCTTTAAA	57.952	33.333	0.00	0.00	0.00	1.52
2462	3044	4.281657	AGATTCCACTTTCTAATTGGCCC	58.718	43.478	0.00	0.00	0.00	5.80
2499	3081	1.265095	CGATGCTTCTGTTGTGTTGCT	59.735	47.619	0.00	0.00	0.00	3.91
2558	3140	4.036852	GCTTGTAAGAGGTTCTGCTTGTTT	59.963	41.667	0.00	0.00	0.00	2.83
2608	3190	2.223947	CCCTTGTTTTGTTTTCCCTCCG	60.224	50.000	0.00	0.00	0.00	4.63
2620	3213	6.069994	TGTTTTCCCTCCGTTACCTTATTTT	58.930	36.000	0.00	0.00	0.00	1.82
2621	3214	6.550481	TGTTTTCCCTCCGTTACCTTATTTTT	59.450	34.615	0.00	0.00	0.00	1.94
2752	3376	8.859236	AAGGTAGAAATTAGGTTAACTGGTTC	57.141	34.615	5.42	3.34	0.00	3.62
2816	4204	7.884041	TTGTAGACCCAAACAACAGAGGATCT	61.884	42.308	0.00	0.00	36.91	2.75
2837	4226	6.270219	TCTCCTGTAAAGTTAGGGGTTTTT	57.730	37.500	0.00	0.00	35.95	1.94
2850	4239	5.535753	AGGGGTTTTTGATCTTCAAACAG	57.464	39.130	13.50	0.00	45.03	3.16
2879	4268	4.030913	AGGTCTTACTAGCAATGTGGCTA	58.969	43.478	0.00	0.00	43.70	3.93
2888	4277	5.817816	ACTAGCAATGTGGCTATGTAAACTC	59.182	40.000	0.00	0.00	44.78	3.01
2895	4284	4.041075	TGTGGCTATGTAAACTCAGGACAA	59.959	41.667	0.00	0.00	0.00	3.18
2900	4289	5.938125	GCTATGTAAACTCAGGACAAAGGAA	59.062	40.000	0.00	0.00	0.00	3.36
2919	4308	5.880901	AGGAATGCTCTGGAAGAAAGTTTA	58.119	37.500	0.00	0.00	46.34	2.01
2928	4318	9.220767	GCTCTGGAAGAAAGTTTATAAGAGAAA	57.779	33.333	16.03	0.00	46.34	2.52
2994	4384	6.180472	GGAGATTCTCAATTTTGGTCAGGTA	58.820	40.000	15.36	0.00	31.08	3.08
2995	4385	6.830838	GGAGATTCTCAATTTTGGTCAGGTAT	59.169	38.462	15.36	0.00	31.08	2.73
3048	4439	4.314522	TGCAGAAGAATTGTTGGGGATA	57.685	40.909	0.00	0.00	0.00	2.59
3098	4489	2.364002	GTGGCTGGATAGAGAACCTCTC	59.636	54.545	0.00	0.00	43.70	3.20
3116	4507	6.463360	ACCTCTCATCTCTTTGTTTCTTCTC	58.537	40.000	0.00	0.00	0.00	2.87
3122	4513	9.650539	CTCATCTCTTTGTTTCTTCTCTCATAA	57.349	33.333	0.00	0.00	0.00	1.90
3125	4516	6.876257	TCTCTTTGTTTCTTCTCTCATAAGCC	59.124	38.462	0.00	0.00	0.00	4.35
3140	4531	8.322905	TCTCATAAGCCATATAATATCTGCCA	57.677	34.615	0.00	0.00	0.00	4.92
3149	4540	7.917505	GCCATATAATATCTGCCATAGTTTTGC	59.082	37.037	0.00	0.00	0.00	3.68
3198	4589	0.819582	GGTGGGATGCCATGTTTCTG	59.180	55.000	10.01	0.00	0.00	3.02
3201	4592	2.165030	GTGGGATGCCATGTTTCTGAAG	59.835	50.000	10.01	0.00	0.00	3.02
3232	4623	8.524870	AATATGATCAACAGCTGAAACAAAAC	57.475	30.769	23.35	4.51	37.67	2.43
3233	4624	5.321959	TGATCAACAGCTGAAACAAAACA	57.678	34.783	23.35	7.05	37.67	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
90	91	1.367102	CCCAAAACGCCAGCAACAT	59.633	52.632	0.00	0.00	0.00	2.71
159	161	2.597217	CACACCGGCCACACCATT	60.597	61.111	0.00	0.00	39.03	3.16
249	251	0.671781	CCGTCCCAGAAGCTTCACAG	60.672	60.000	27.57	16.26	0.00	3.66
333	335	4.444838	CCATCACCGTCGGCCGAA	62.445	66.667	32.93	15.31	39.56	4.30
440	444	1.892209	ACCGAATCAAAGGCTTTCGT	58.108	45.000	10.08	0.00	40.34	3.85
502	506	3.248363	TGTCTTCAAACACAATGCTCTCG	59.752	43.478	0.00	0.00	0.00	4.04
519	523	1.901085	GAGGAGCCGGTCATGTCTT	59.099	57.895	1.90	0.00	0.00	3.01
585	589	2.410060	CGACGGGCGTACATAGCA	59.590	61.111	0.00	0.00	36.08	3.49
604	608	5.331975	AAGATGCAGTCTTGGACACACCA	62.332	47.826	9.65	0.00	45.38	4.17
673	679	1.202417	CGCACCATCCACTCTTATCGT	60.202	52.381	0.00	0.00	0.00	3.73
726	732	2.550606	CCGAAACCGAACATCTCCAAAA	59.449	45.455	0.00	0.00	0.00	2.44
834	841	3.754965	AGCATATCACAAACACCACACT	58.245	40.909	0.00	0.00	0.00	3.55
849	856	3.130633	TCGCTGCGAATAACAAGCATAT	58.869	40.909	23.88	0.00	40.35	1.78
860	867	1.993370	GAAACTACACTCGCTGCGAAT	59.007	47.619	25.86	14.10	34.74	3.34
948	955	7.016268	AGGGACGCTCTTATCCAGAAAATAATA	59.984	37.037	0.00	0.00	36.65	0.98
1404	1427	0.178921	TGCAGTTCTGGAGGAGGACT	60.179	55.000	1.97	0.00	41.89	3.85
1425	1448	1.447838	GACGGCGAATTGCTCCAGA	60.448	57.895	16.62	0.00	45.43	3.86
1528	1554	4.161377	GGAGGAGAGGATATAGCATCCAAC	59.839	50.000	0.00	0.40	40.61	3.77
1573	1599	3.068881	GCAGGTGTAGACCAGGCA	58.931	61.111	17.38	0.00	45.98	4.75
1749	1777	5.620738	TCAGCACAAAGATATAGGCTTCT	57.379	39.130	0.00	0.00	0.00	2.85
1776	1804	3.587797	TGGGAGAAATGTAGTGTCGTC	57.412	47.619	0.00	0.00	0.00	4.20
1777	1805	4.345859	TTTGGGAGAAATGTAGTGTCGT	57.654	40.909	0.00	0.00	0.00	4.34
1830	1858	1.140852	TCGCCAACCCTGAATATGAGG	59.859	52.381	0.00	0.00	0.00	3.86
1973	2007	2.232452	CTCTTGGTGACCTCGACAATCT	59.768	50.000	2.11	0.00	0.00	2.40
1990	2024	4.287067	ACCATGATCCACAAGTGTACTCTT	59.713	41.667	4.35	4.35	0.00	2.85
2080	2114	8.543774	AGACATGAACCAACTAGATTTATGACT	58.456	33.333	0.00	1.67	0.00	3.41
2088	2122	6.098838	TGCATAGAGACATGAACCAACTAGAT	59.901	38.462	0.00	0.00	0.00	1.98
2089	2123	5.422012	TGCATAGAGACATGAACCAACTAGA	59.578	40.000	0.00	0.00	0.00	2.43
2328	2370	6.757010	GGCTCGTTTCTCAAATAGAATGTCTA	59.243	38.462	0.00	0.00	43.75	2.59
2393	2801	3.059166	GCAGCCACATAAAAACACAAGG	58.941	45.455	0.00	0.00	0.00	3.61
2462	3044	3.296628	CATCGAACCAAAAAGACAACCG	58.703	45.455	0.00	0.00	0.00	4.44
2583	3165	4.101114	AGGGAAAACAAAACAAGGGAGTT	58.899	39.130	0.00	0.00	0.00	3.01
2745	3369	8.429641	ACGATATTTCCTAATATGTGAACCAGT	58.570	33.333	0.00	0.00	37.13	4.00
2816	4204	6.015991	TCAAAAACCCCTAACTTTACAGGA	57.984	37.500	0.00	0.00	33.42	3.86
2850	4239	7.011482	CCACATTGCTAGTAAGACCTTATTCAC	59.989	40.741	0.00	0.00	0.00	3.18
2879	4268	5.183904	GCATTCCTTTGTCCTGAGTTTACAT	59.816	40.000	0.00	0.00	0.00	2.29
2888	4277	2.089980	CCAGAGCATTCCTTTGTCCTG	58.910	52.381	0.00	0.00	0.00	3.86
2895	4284	4.379302	ACTTTCTTCCAGAGCATTCCTT	57.621	40.909	0.00	0.00	0.00	3.36
2900	4289	8.543774	TCTCTTATAAACTTTCTTCCAGAGCAT	58.456	33.333	0.00	0.00	0.00	3.79
2955	4345	8.547967	TGAGAATCTCCATTACTGTGTTTAAC	57.452	34.615	7.91	0.00	34.92	2.01
2966	4356	7.340232	CCTGACCAAAATTGAGAATCTCCATTA	59.660	37.037	9.58	0.00	34.92	1.90
3013	4403	7.870509	ATTCTTCTGCAATGCTTATAGAACA	57.129	32.000	6.82	0.00	0.00	3.18
3014	4404	8.186821	ACAATTCTTCTGCAATGCTTATAGAAC	58.813	33.333	6.82	0.00	0.00	3.01
3098	4489	8.389603	GCTTATGAGAGAAGAAACAAAGAGATG	58.610	37.037	0.00	0.00	0.00	2.90
3122	4513	9.182214	CAAAACTATGGCAGATATTATATGGCT	57.818	33.333	21.05	11.86	45.92	4.75
3138	4529	7.550551	TCAGAAACAGAGATAGCAAAACTATGG	59.449	37.037	0.00	0.00	41.87	2.74
3140	4531	9.160496	CTTCAGAAACAGAGATAGCAAAACTAT	57.840	33.333	0.00	0.00	44.62	2.12
3149	4540	8.602328	CATTTAGCACTTCAGAAACAGAGATAG	58.398	37.037	0.00	0.00	0.00	2.08
3151	4542	7.164122	TCATTTAGCACTTCAGAAACAGAGAT	58.836	34.615	0.00	0.00	0.00	2.75
3198	4589	6.426328	CAGCTGTTGATCATATTCCCTACTTC	59.574	42.308	5.25	0.00	0.00	3.01
3201	4592	5.858381	TCAGCTGTTGATCATATTCCCTAC	58.142	41.667	14.67	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.