Multiple sequence alignment - TraesCS6B01G162800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G162800 chr6B 100.000 7099 0 0 1 7099 169226762 169219664 0.000000e+00 13110.0
1 TraesCS6B01G162800 chr6B 89.908 109 10 1 4935 5042 517835968 517836076 9.600000e-29 139.0
2 TraesCS6B01G162800 chr6B 78.344 157 29 4 3807 3961 684132616 684132769 5.860000e-16 97.1
3 TraesCS6B01G162800 chr6B 92.308 39 3 0 6991 7029 78289239 78289201 1.000000e-03 56.5
4 TraesCS6B01G162800 chr6B 92.308 39 3 0 6991 7029 78334684 78334646 1.000000e-03 56.5
5 TraesCS6B01G162800 chr6B 96.970 33 1 0 1980 2012 400056332 400056364 1.000000e-03 56.5
6 TraesCS6B01G162800 chr6B 96.970 33 1 0 1980 2012 400123347 400123379 1.000000e-03 56.5
7 TraesCS6B01G162800 chr6D 95.775 2722 61 7 2224 4944 88879769 88877101 0.000000e+00 4340.0
8 TraesCS6B01G162800 chr6D 93.321 2126 91 20 5003 7099 88877099 88874996 0.000000e+00 3092.0
9 TraesCS6B01G162800 chr6D 93.506 1309 62 12 832 2121 88881071 88879767 0.000000e+00 1925.0
10 TraesCS6B01G162800 chr6D 91.640 311 24 2 111 420 88881778 88881469 5.090000e-116 429.0
11 TraesCS6B01G162800 chr6D 85.185 297 40 3 475 770 88881474 88881181 1.160000e-77 302.0
12 TraesCS6B01G162800 chr6D 99.091 110 1 0 2119 2228 7489743 7489852 1.560000e-46 198.0
13 TraesCS6B01G162800 chr6D 99.091 110 1 0 2119 2228 7493668 7493777 1.560000e-46 198.0
14 TraesCS6B01G162800 chr6D 99.091 110 1 0 2119 2228 7499083 7499192 1.560000e-46 198.0
15 TraesCS6B01G162800 chr6D 91.429 105 7 2 4941 5043 319691668 319691564 7.420000e-30 143.0
16 TraesCS6B01G162800 chr6A 89.008 1683 160 16 3269 4941 106933204 106931537 0.000000e+00 2060.0
17 TraesCS6B01G162800 chr6A 94.785 1323 49 5 5214 6519 106930987 106929668 0.000000e+00 2043.0
18 TraesCS6B01G162800 chr6A 91.061 1018 78 9 2224 3239 106935243 106934237 0.000000e+00 1363.0
19 TraesCS6B01G162800 chr6A 86.239 763 47 25 858 1579 106936634 106935889 0.000000e+00 774.0
20 TraesCS6B01G162800 chr6A 89.444 540 45 8 1584 2121 106935770 106935241 0.000000e+00 671.0
21 TraesCS6B01G162800 chr6A 92.227 476 27 3 6517 6988 106929508 106929039 0.000000e+00 665.0
22 TraesCS6B01G162800 chr6A 97.619 42 1 0 5139 5180 106931105 106931064 9.880000e-09 73.1
23 TraesCS6B01G162800 chr6A 89.091 55 4 2 6145 6197 548408099 548408045 4.600000e-07 67.6
24 TraesCS6B01G162800 chr5D 99.091 110 1 0 2116 2225 29168313 29168204 1.560000e-46 198.0
25 TraesCS6B01G162800 chr5D 85.849 106 11 3 5700 5805 127276365 127276466 7.530000e-20 110.0
26 TraesCS6B01G162800 chr5D 97.297 37 1 0 6989 7025 526842894 526842858 5.950000e-06 63.9
27 TraesCS6B01G162800 chr3A 97.436 117 2 1 2111 2227 648549024 648548909 1.560000e-46 198.0
28 TraesCS6B01G162800 chr3A 97.368 114 3 0 2116 2229 256934798 256934685 2.020000e-45 195.0
29 TraesCS6B01G162800 chr3A 84.762 105 12 3 5701 5805 556332615 556332715 1.260000e-17 102.0
30 TraesCS6B01G162800 chr3A 92.308 52 3 1 6144 6195 470095738 470095788 9.880000e-09 73.1
31 TraesCS6B01G162800 chr5B 98.214 112 2 0 2115 2226 278886876 278886987 5.620000e-46 196.0
32 TraesCS6B01G162800 chr5B 83.036 112 14 5 5703 5814 688000259 688000153 5.860000e-16 97.1
33 TraesCS6B01G162800 chr1D 98.214 112 2 0 2115 2226 227655307 227655418 5.620000e-46 196.0
34 TraesCS6B01G162800 chr7A 95.041 121 4 2 2105 2225 735739921 735739803 9.400000e-44 189.0
35 TraesCS6B01G162800 chr5A 79.087 263 46 8 511 769 706054467 706054724 9.470000e-39 172.0
36 TraesCS6B01G162800 chr5A 89.286 56 6 0 6144 6199 559514637 559514692 3.550000e-08 71.3
37 TraesCS6B01G162800 chr1B 94.898 98 4 1 4941 5037 359902048 359902145 1.230000e-32 152.0
38 TraesCS6B01G162800 chr2D 94.000 100 5 1 4939 5037 445894982 445894883 4.440000e-32 150.0
39 TraesCS6B01G162800 chr2D 89.286 112 10 2 4939 5048 367506498 367506387 9.600000e-29 139.0
40 TraesCS6B01G162800 chr2D 84.466 103 12 4 5703 5805 252294283 252294381 1.630000e-16 99.0
41 TraesCS6B01G162800 chr2D 93.750 48 3 0 6144 6191 82095138 82095185 9.880000e-09 73.1
42 TraesCS6B01G162800 chr2D 90.741 54 4 1 6144 6196 142662499 142662552 3.550000e-08 71.3
43 TraesCS6B01G162800 chr7B 92.308 104 7 1 4940 5042 562993065 562993168 5.740000e-31 147.0
44 TraesCS6B01G162800 chr7B 95.745 47 1 1 6145 6190 533304551 533304597 2.750000e-09 75.0
45 TraesCS6B01G162800 chr7B 93.617 47 2 1 791 837 597702587 597702542 1.280000e-07 69.4
46 TraesCS6B01G162800 chr2B 90.741 108 7 3 4941 5047 63293187 63293082 2.670000e-29 141.0
47 TraesCS6B01G162800 chr2B 82.524 103 14 4 5703 5805 279243209 279243307 3.530000e-13 87.9
48 TraesCS6B01G162800 chr4D 88.696 115 11 2 4941 5054 375135018 375134905 9.600000e-29 139.0
49 TraesCS6B01G162800 chr3B 91.919 99 7 1 4941 5038 487221376 487221474 3.450000e-28 137.0
50 TraesCS6B01G162800 chr3B 97.674 43 1 0 6144 6186 423807058 423807100 2.750000e-09 75.0
51 TraesCS6B01G162800 chr1A 85.586 111 12 4 5701 5811 428996667 428996561 5.820000e-21 113.0
52 TraesCS6B01G162800 chr1A 100.000 33 0 0 6992 7024 397773787 397773755 2.140000e-05 62.1
53 TraesCS6B01G162800 chrUn 86.813 91 9 2 5715 5805 112187715 112187628 1.630000e-16 99.0
54 TraesCS6B01G162800 chrUn 100.000 33 0 0 6992 7024 94223227 94223195 2.140000e-05 62.1
55 TraesCS6B01G162800 chrUn 100.000 33 0 0 6992 7024 378270627 378270659 2.140000e-05 62.1
56 TraesCS6B01G162800 chrUn 100.000 33 0 0 6992 7024 447954287 447954255 2.140000e-05 62.1
57 TraesCS6B01G162800 chr2A 97.143 35 1 0 6989 7023 395112001 395112035 7.690000e-05 60.2
58 TraesCS6B01G162800 chr2A 100.000 32 0 0 6992 7023 406071820 406071789 7.690000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G162800 chr6B 169219664 169226762 7098 True 13110.000000 13110 100.000000 1 7099 1 chr6B.!!$R3 7098
1 TraesCS6B01G162800 chr6D 88874996 88881778 6782 True 2017.600000 4340 91.885400 111 7099 5 chr6D.!!$R2 6988
2 TraesCS6B01G162800 chr6A 106929039 106936634 7595 True 1092.728571 2060 91.483286 858 6988 7 chr6A.!!$R2 6130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.036306 CATCCCGGCCTGGTAATACC 59.964 60.000 13.58 1.71 39.22 2.73 F
98 99 0.108804 ATAGTTCGTGCGTGTGAGGG 60.109 55.000 0.00 0.00 0.00 4.30 F
462 464 0.180406 AGACTTTGGTCGCCACTTGT 59.820 50.000 0.00 0.00 46.29 3.16 F
463 465 0.307760 GACTTTGGTCGCCACTTGTG 59.692 55.000 0.00 0.00 30.78 3.33 F
1708 1919 0.331278 TGGATTGGCTGTTACCTGGG 59.669 55.000 0.00 0.00 0.00 4.45 F
2129 2342 0.333993 TTGGCTACTACTCCCTCCGT 59.666 55.000 0.00 0.00 0.00 4.69 F
3444 4662 0.112606 CCTCGGGGAGTAGCCAGATA 59.887 60.000 0.00 0.00 38.95 1.98 F
4207 5436 1.396996 GGCATCGATGTTACGCTTTGT 59.603 47.619 25.47 0.00 0.00 2.83 F
4956 6189 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 1951 0.608856 TGCTGACCGTTGCCATGATT 60.609 50.000 0.00 0.0 0.00 2.57 R
1837 2050 1.634973 TGGCTCATCTCACCCATGAAA 59.365 47.619 0.00 0.0 33.30 2.69 R
2207 2420 0.967380 GGTACTCCCTCCGTTCCGAA 60.967 60.000 0.00 0.0 0.00 4.30 R
2238 2452 1.344438 CACACCTAAGCACACAGAGGA 59.656 52.381 0.00 0.0 33.04 3.71 R
3196 3411 1.006281 TCTACCCAGCTCGTTAAGGGA 59.994 52.381 11.38 0.0 44.30 4.20 R
3593 4811 1.080705 GTCGTTGCAGCTACCTCGT 60.081 57.895 1.07 0.0 0.00 4.18 R
4944 6177 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.0 0.00 4.30 R
5850 7466 0.470341 AAGGGAGAAGATAAGCGGGC 59.530 55.000 0.00 0.0 0.00 6.13 R
6605 8385 0.306840 CTGGATGTGATGCGTGATGC 59.693 55.000 0.00 0.0 46.70 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.120765 AAAAACCAAGGTCGTGGCC 58.879 52.632 0.00 0.00 43.00 5.36
43 44 0.396556 AAAAACCAAGGTCGTGGCCT 60.397 50.000 3.32 0.00 43.00 5.19
44 45 0.822121 AAAACCAAGGTCGTGGCCTC 60.822 55.000 3.32 0.00 43.00 4.70
45 46 2.692273 AAACCAAGGTCGTGGCCTCC 62.692 60.000 3.32 1.20 43.00 4.30
46 47 4.410400 CCAAGGTCGTGGCCTCCC 62.410 72.222 3.32 0.00 38.03 4.30
47 48 4.760047 CAAGGTCGTGGCCTCCCG 62.760 72.222 3.32 3.74 38.03 5.14
74 75 2.515901 GCATCCCGGCCTGGTAAT 59.484 61.111 13.58 0.00 35.15 1.89
75 76 1.758592 GCATCCCGGCCTGGTAATA 59.241 57.895 13.58 0.00 35.15 0.98
76 77 0.605589 GCATCCCGGCCTGGTAATAC 60.606 60.000 13.58 0.00 35.15 1.89
77 78 0.036306 CATCCCGGCCTGGTAATACC 59.964 60.000 13.58 1.71 39.22 2.73
78 79 1.131928 ATCCCGGCCTGGTAATACCC 61.132 60.000 13.58 0.00 37.50 3.69
79 80 2.073716 CCCGGCCTGGTAATACCCA 61.074 63.158 7.03 0.00 37.50 4.51
80 81 1.423794 CCCGGCCTGGTAATACCCAT 61.424 60.000 7.03 0.00 37.50 4.00
81 82 1.354101 CCGGCCTGGTAATACCCATA 58.646 55.000 7.03 0.00 37.50 2.74
82 83 1.278127 CCGGCCTGGTAATACCCATAG 59.722 57.143 7.03 0.00 37.50 2.23
83 84 1.975680 CGGCCTGGTAATACCCATAGT 59.024 52.381 7.03 0.00 37.50 2.12
84 85 2.370849 CGGCCTGGTAATACCCATAGTT 59.629 50.000 7.03 0.00 37.50 2.24
85 86 3.556423 CGGCCTGGTAATACCCATAGTTC 60.556 52.174 7.03 0.00 37.50 3.01
86 87 3.556423 GGCCTGGTAATACCCATAGTTCG 60.556 52.174 7.03 0.00 37.50 3.95
87 88 3.070590 GCCTGGTAATACCCATAGTTCGT 59.929 47.826 7.03 0.00 37.50 3.85
88 89 4.628074 CCTGGTAATACCCATAGTTCGTG 58.372 47.826 7.03 0.00 37.50 4.35
89 90 4.056050 CTGGTAATACCCATAGTTCGTGC 58.944 47.826 7.03 0.00 37.50 5.34
90 91 3.054878 GGTAATACCCATAGTTCGTGCG 58.945 50.000 0.00 0.00 30.04 5.34
91 92 2.973694 AATACCCATAGTTCGTGCGT 57.026 45.000 0.00 0.00 0.00 5.24
92 93 2.218953 ATACCCATAGTTCGTGCGTG 57.781 50.000 0.00 0.00 0.00 5.34
93 94 0.889994 TACCCATAGTTCGTGCGTGT 59.110 50.000 0.00 0.00 0.00 4.49
94 95 0.669318 ACCCATAGTTCGTGCGTGTG 60.669 55.000 0.00 0.00 0.00 3.82
95 96 0.389296 CCCATAGTTCGTGCGTGTGA 60.389 55.000 0.00 0.00 0.00 3.58
96 97 0.992072 CCATAGTTCGTGCGTGTGAG 59.008 55.000 0.00 0.00 0.00 3.51
97 98 0.992072 CATAGTTCGTGCGTGTGAGG 59.008 55.000 0.00 0.00 0.00 3.86
98 99 0.108804 ATAGTTCGTGCGTGTGAGGG 60.109 55.000 0.00 0.00 0.00 4.30
99 100 2.758770 TAGTTCGTGCGTGTGAGGGC 62.759 60.000 0.00 0.00 0.00 5.19
100 101 4.980805 TTCGTGCGTGTGAGGGCC 62.981 66.667 0.00 0.00 0.00 5.80
107 108 4.729918 GTGTGAGGGCCAGCTGGG 62.730 72.222 33.46 15.81 40.85 4.45
126 127 1.256812 GGTTTGCTGGTGCCATAAGT 58.743 50.000 0.00 0.00 38.71 2.24
183 184 1.530655 GGCAATGGTATTCCCCGGG 60.531 63.158 15.80 15.80 0.00 5.73
187 188 2.878526 GCAATGGTATTCCCCGGGTATC 60.879 54.545 21.85 6.30 0.00 2.24
248 249 3.425938 CTTTCGCGTGCGCTGGATC 62.426 63.158 9.73 0.00 39.59 3.36
254 255 3.567797 GTGCGCTGGATCTTCCGC 61.568 66.667 9.73 14.37 45.99 5.54
261 262 0.250234 CTGGATCTTCCGCTGGACAA 59.750 55.000 0.00 0.00 40.17 3.18
265 266 2.478831 GATCTTCCGCTGGACAAGATC 58.521 52.381 16.48 16.48 38.26 2.75
269 270 1.194218 TCCGCTGGACAAGATCATCA 58.806 50.000 0.00 0.00 0.00 3.07
290 291 2.303890 AGATGTGACTGCAAGATGGTGA 59.696 45.455 0.00 0.00 37.43 4.02
297 298 5.412594 GTGACTGCAAGATGGTGATTTTAGA 59.587 40.000 0.00 0.00 37.43 2.10
332 333 7.120051 AGGTACTGAAGAAAGATACTCTAGCA 58.880 38.462 0.00 0.00 37.18 3.49
348 349 7.727331 ACTCTAGCATCATAAAGAGAATTGC 57.273 36.000 5.27 0.00 38.16 3.56
356 357 1.553706 AAAGAGAATTGCAGCCAGGG 58.446 50.000 0.00 0.00 0.00 4.45
369 370 0.962855 GCCAGGGCAGGAGAGTTTTC 60.963 60.000 5.20 0.00 41.49 2.29
370 371 0.695347 CCAGGGCAGGAGAGTTTTCT 59.305 55.000 0.00 0.00 36.01 2.52
371 372 1.909302 CCAGGGCAGGAGAGTTTTCTA 59.091 52.381 0.00 0.00 32.53 2.10
372 373 2.093235 CCAGGGCAGGAGAGTTTTCTAG 60.093 54.545 0.00 0.00 32.53 2.43
374 375 1.557371 GGGCAGGAGAGTTTTCTAGCT 59.443 52.381 0.00 0.00 32.53 3.32
388 390 9.122613 GAGTTTTCTAGCTGTGATTTCATTTTC 57.877 33.333 0.00 0.00 0.00 2.29
395 397 5.649831 AGCTGTGATTTCATTTTCTAGGGTC 59.350 40.000 0.00 0.00 0.00 4.46
408 410 2.500098 TCTAGGGTCGTTCTGAATTGGG 59.500 50.000 0.00 0.00 0.00 4.12
415 417 2.038426 TCGTTCTGAATTGGGAAGCTCA 59.962 45.455 0.00 0.00 0.00 4.26
416 418 3.012518 CGTTCTGAATTGGGAAGCTCAT 58.987 45.455 0.00 0.00 0.00 2.90
417 419 4.081142 TCGTTCTGAATTGGGAAGCTCATA 60.081 41.667 0.00 0.00 0.00 2.15
418 420 4.635765 CGTTCTGAATTGGGAAGCTCATAA 59.364 41.667 0.00 0.00 0.00 1.90
419 421 5.447818 CGTTCTGAATTGGGAAGCTCATAAC 60.448 44.000 0.00 0.00 0.00 1.89
420 422 5.441718 TCTGAATTGGGAAGCTCATAACT 57.558 39.130 0.00 0.00 0.00 2.24
421 423 6.560003 TCTGAATTGGGAAGCTCATAACTA 57.440 37.500 0.00 0.00 0.00 2.24
422 424 6.957631 TCTGAATTGGGAAGCTCATAACTAA 58.042 36.000 0.00 0.00 0.00 2.24
423 425 7.050377 TCTGAATTGGGAAGCTCATAACTAAG 58.950 38.462 0.00 0.00 0.00 2.18
424 426 5.590259 TGAATTGGGAAGCTCATAACTAAGC 59.410 40.000 0.00 0.00 38.84 3.09
425 427 4.568072 TTGGGAAGCTCATAACTAAGCA 57.432 40.909 0.00 0.00 41.06 3.91
426 428 4.568072 TGGGAAGCTCATAACTAAGCAA 57.432 40.909 0.00 0.00 41.06 3.91
427 429 4.917385 TGGGAAGCTCATAACTAAGCAAA 58.083 39.130 0.00 0.00 41.06 3.68
428 430 5.321102 TGGGAAGCTCATAACTAAGCAAAA 58.679 37.500 0.00 0.00 41.06 2.44
429 431 5.772672 TGGGAAGCTCATAACTAAGCAAAAA 59.227 36.000 0.00 0.00 41.06 1.94
430 432 6.437162 TGGGAAGCTCATAACTAAGCAAAAAT 59.563 34.615 0.00 0.00 41.06 1.82
431 433 7.039082 TGGGAAGCTCATAACTAAGCAAAAATT 60.039 33.333 0.00 0.00 41.06 1.82
432 434 7.819415 GGGAAGCTCATAACTAAGCAAAAATTT 59.181 33.333 0.00 0.00 41.06 1.82
433 435 8.864024 GGAAGCTCATAACTAAGCAAAAATTTC 58.136 33.333 0.00 0.00 41.06 2.17
434 436 9.631452 GAAGCTCATAACTAAGCAAAAATTTCT 57.369 29.630 0.00 0.00 41.06 2.52
447 449 8.379457 AGCAAAAATTTCTAGTTCGTTAGACT 57.621 30.769 0.00 0.00 29.67 3.24
448 450 8.837389 AGCAAAAATTTCTAGTTCGTTAGACTT 58.163 29.630 0.00 0.00 29.67 3.01
449 451 9.447040 GCAAAAATTTCTAGTTCGTTAGACTTT 57.553 29.630 0.00 0.00 29.67 2.66
451 453 9.946165 AAAAATTTCTAGTTCGTTAGACTTTGG 57.054 29.630 0.00 0.00 29.67 3.28
452 454 8.672823 AAATTTCTAGTTCGTTAGACTTTGGT 57.327 30.769 0.00 0.00 29.67 3.67
453 455 7.886405 ATTTCTAGTTCGTTAGACTTTGGTC 57.114 36.000 0.00 0.00 42.41 4.02
454 456 5.039480 TCTAGTTCGTTAGACTTTGGTCG 57.961 43.478 0.00 0.00 46.29 4.79
455 457 2.401351 AGTTCGTTAGACTTTGGTCGC 58.599 47.619 0.00 0.00 46.29 5.19
456 458 1.458445 GTTCGTTAGACTTTGGTCGCC 59.542 52.381 0.00 0.00 46.29 5.54
457 459 0.675083 TCGTTAGACTTTGGTCGCCA 59.325 50.000 0.00 0.00 46.29 5.69
458 460 0.788391 CGTTAGACTTTGGTCGCCAC 59.212 55.000 0.00 0.00 46.29 5.01
459 461 1.604693 CGTTAGACTTTGGTCGCCACT 60.605 52.381 0.00 0.00 46.29 4.00
460 462 2.490991 GTTAGACTTTGGTCGCCACTT 58.509 47.619 0.00 0.00 46.29 3.16
461 463 2.163818 TAGACTTTGGTCGCCACTTG 57.836 50.000 0.00 0.00 46.29 3.16
462 464 0.180406 AGACTTTGGTCGCCACTTGT 59.820 50.000 0.00 0.00 46.29 3.16
463 465 0.307760 GACTTTGGTCGCCACTTGTG 59.692 55.000 0.00 0.00 30.78 3.33
464 466 1.101049 ACTTTGGTCGCCACTTGTGG 61.101 55.000 14.94 14.94 30.78 4.17
472 474 4.275781 CCACTTGTGGCTGGGTTT 57.724 55.556 6.88 0.00 0.00 3.27
473 475 2.041153 CCACTTGTGGCTGGGTTTC 58.959 57.895 6.88 0.00 0.00 2.78
474 476 1.463553 CCACTTGTGGCTGGGTTTCC 61.464 60.000 6.88 0.00 0.00 3.13
499 501 3.459969 GACCCCCTATCATTCCTGACTTT 59.540 47.826 0.00 0.00 33.22 2.66
500 502 3.858638 ACCCCCTATCATTCCTGACTTTT 59.141 43.478 0.00 0.00 33.22 2.27
502 504 4.646492 CCCCCTATCATTCCTGACTTTTTG 59.354 45.833 0.00 0.00 33.22 2.44
513 515 9.161629 CATTCCTGACTTTTTGTAAACCTTTTT 57.838 29.630 0.00 0.00 0.00 1.94
563 565 9.190858 TCAATAAAACAGAATACAATTGCACAC 57.809 29.630 5.05 0.00 0.00 3.82
565 567 6.826893 AAAACAGAATACAATTGCACACAC 57.173 33.333 5.05 0.00 0.00 3.82
575 577 1.784036 TTGCACACACACATGCGGAG 61.784 55.000 0.00 0.00 45.13 4.63
576 578 1.960763 GCACACACACATGCGGAGA 60.961 57.895 0.00 0.00 30.97 3.71
583 585 0.973632 ACACATGCGGAGACTACCAA 59.026 50.000 0.00 0.00 0.00 3.67
591 593 2.549349 GCGGAGACTACCAAAAAGACCA 60.549 50.000 0.00 0.00 0.00 4.02
592 594 3.735591 CGGAGACTACCAAAAAGACCAA 58.264 45.455 0.00 0.00 0.00 3.67
593 595 4.131596 CGGAGACTACCAAAAAGACCAAA 58.868 43.478 0.00 0.00 0.00 3.28
608 610 4.978099 AGACCAAAACATGACAGATGTCT 58.022 39.130 13.74 1.30 44.99 3.41
622 624 6.148315 TGACAGATGTCTAGAAAACATTGCAG 59.852 38.462 13.74 0.00 44.99 4.41
630 632 8.296713 TGTCTAGAAAACATTGCAGAAATAACC 58.703 33.333 0.00 0.00 0.00 2.85
631 633 7.755373 GTCTAGAAAACATTGCAGAAATAACCC 59.245 37.037 0.00 0.00 0.00 4.11
632 634 5.793817 AGAAAACATTGCAGAAATAACCCC 58.206 37.500 0.00 0.00 0.00 4.95
633 635 4.551702 AAACATTGCAGAAATAACCCCC 57.448 40.909 0.00 0.00 0.00 5.40
635 637 2.831526 ACATTGCAGAAATAACCCCCAC 59.168 45.455 0.00 0.00 0.00 4.61
639 641 3.309296 TGCAGAAATAACCCCCACAAAA 58.691 40.909 0.00 0.00 0.00 2.44
640 642 3.711704 TGCAGAAATAACCCCCACAAAAA 59.288 39.130 0.00 0.00 0.00 1.94
666 668 5.888982 TGATAAATAACTCCTCCAGGGTC 57.111 43.478 0.00 0.00 36.25 4.46
668 670 1.497161 AATAACTCCTCCAGGGTCCG 58.503 55.000 0.00 0.00 36.25 4.79
711 713 4.794439 CATCGACCGTCAGCGCCA 62.794 66.667 2.29 0.00 36.67 5.69
721 723 4.717629 CAGCGCCACCGAGACGAA 62.718 66.667 2.29 0.00 36.29 3.85
725 727 2.338984 GCCACCGAGACGAACACT 59.661 61.111 0.00 0.00 0.00 3.55
729 731 1.402456 CCACCGAGACGAACACTAAGG 60.402 57.143 0.00 0.00 0.00 2.69
733 735 3.243336 CCGAGACGAACACTAAGGAAAG 58.757 50.000 0.00 0.00 0.00 2.62
736 738 4.617645 CGAGACGAACACTAAGGAAAGAAG 59.382 45.833 0.00 0.00 0.00 2.85
760 762 3.323751 AGCACCAGCAAATCAAAATCC 57.676 42.857 0.00 0.00 45.49 3.01
764 766 4.622220 GCACCAGCAAATCAAAATCCAGAT 60.622 41.667 0.00 0.00 41.58 2.90
770 772 4.676196 GCAAATCAAAATCCAGATCAGCGT 60.676 41.667 0.00 0.00 0.00 5.07
771 773 5.404946 CAAATCAAAATCCAGATCAGCGTT 58.595 37.500 0.00 0.00 0.00 4.84
772 774 4.627611 ATCAAAATCCAGATCAGCGTTG 57.372 40.909 0.00 0.00 0.00 4.10
773 775 3.673902 TCAAAATCCAGATCAGCGTTGA 58.326 40.909 3.86 3.86 37.81 3.18
775 777 4.083324 TCAAAATCCAGATCAGCGTTGAAC 60.083 41.667 5.91 3.33 36.78 3.18
776 778 2.768253 ATCCAGATCAGCGTTGAACA 57.232 45.000 5.91 0.00 36.78 3.18
777 779 2.542020 TCCAGATCAGCGTTGAACAA 57.458 45.000 5.91 0.00 36.78 2.83
778 780 2.143122 TCCAGATCAGCGTTGAACAAC 58.857 47.619 5.91 7.51 36.78 3.32
779 781 1.872952 CCAGATCAGCGTTGAACAACA 59.127 47.619 5.91 0.00 41.20 3.33
780 782 2.349817 CCAGATCAGCGTTGAACAACAC 60.350 50.000 5.91 7.83 41.20 3.32
782 784 3.002656 CAGATCAGCGTTGAACAACACTT 59.997 43.478 5.91 0.23 41.20 3.16
783 785 3.627577 AGATCAGCGTTGAACAACACTTT 59.372 39.130 5.91 3.84 41.20 2.66
785 787 4.948608 TCAGCGTTGAACAACACTTTAA 57.051 36.364 16.13 0.16 41.20 1.52
786 788 5.298197 TCAGCGTTGAACAACACTTTAAA 57.702 34.783 16.13 0.00 41.20 1.52
787 789 5.328691 TCAGCGTTGAACAACACTTTAAAG 58.671 37.500 13.76 13.76 41.20 1.85
803 839 9.239551 ACACTTTAAAGTTTAAACCTTGAGACT 57.760 29.630 18.25 0.00 37.08 3.24
810 846 9.642343 AAAGTTTAAACCTTGAGACTCCTTAAT 57.358 29.630 14.72 0.00 0.00 1.40
820 856 9.284968 CCTTGAGACTCCTTAATAAAGTTTTGA 57.715 33.333 0.00 0.00 0.00 2.69
829 865 9.016438 TCCTTAATAAAGTTTTGATTTACCGCT 57.984 29.630 0.00 0.00 0.00 5.52
1220 1291 2.805897 CGGAGCAGGACAGAGAGAT 58.194 57.895 0.00 0.00 0.00 2.75
1231 1302 3.428316 GGACAGAGAGATCAAGAACGACC 60.428 52.174 0.00 0.00 0.00 4.79
1269 1340 2.676471 AAGATTGGCGGTGGTGGC 60.676 61.111 0.00 0.00 0.00 5.01
1353 1424 1.481056 GGGCGGGGCTCATGTACTAT 61.481 60.000 0.00 0.00 0.00 2.12
1368 1439 1.007964 CTATGTCCTCCAGCTCGCG 60.008 63.158 0.00 0.00 0.00 5.87
1419 1490 5.397899 CCTGCATATTCTCACCCCTTTCTTA 60.398 44.000 0.00 0.00 0.00 2.10
1424 1495 2.176889 TCTCACCCCTTTCTTACTCCG 58.823 52.381 0.00 0.00 0.00 4.63
1425 1496 1.900486 CTCACCCCTTTCTTACTCCGT 59.100 52.381 0.00 0.00 0.00 4.69
1478 1561 5.820131 TGCTATGCATTTCGGTGAATTTAG 58.180 37.500 3.54 0.00 31.71 1.85
1519 1609 1.406614 GGCAATGCTAGCAGACAGTCT 60.407 52.381 23.89 0.56 0.00 3.24
1525 1615 2.165234 TGCTAGCAGACAGTCTCACATC 59.835 50.000 14.93 0.00 0.00 3.06
1531 1621 3.677424 GCAGACAGTCTCACATCCTTACC 60.677 52.174 0.00 0.00 0.00 2.85
1563 1655 7.781324 ATCCTGATTAATATCCCGCAAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
1603 1809 9.739276 ATCCAAAAGTGTCATACAAAGAGATAA 57.261 29.630 0.00 0.00 0.00 1.75
1604 1810 9.739276 TCCAAAAGTGTCATACAAAGAGATAAT 57.261 29.630 0.00 0.00 0.00 1.28
1615 1826 9.071221 CATACAAAGAGATAATAGAAGCTAGCG 57.929 37.037 9.55 0.00 0.00 4.26
1654 1865 1.548582 CCATGCTGTCTTTTCCCTGGT 60.549 52.381 0.00 0.00 0.00 4.00
1663 1874 3.636764 GTCTTTTCCCTGGTGATGTTGTT 59.363 43.478 0.00 0.00 0.00 2.83
1708 1919 0.331278 TGGATTGGCTGTTACCTGGG 59.669 55.000 0.00 0.00 0.00 4.45
1716 1927 1.229082 TGTTACCTGGGGAGACGCT 60.229 57.895 0.00 0.00 45.02 5.07
1781 1992 5.061853 CACTGATAACAGAGATGATTGGGG 58.938 45.833 7.05 0.00 46.03 4.96
1803 2014 6.172630 GGGCATTGGTGTTGATAAAAGATTT 58.827 36.000 0.00 0.00 0.00 2.17
1806 2017 7.148590 GGCATTGGTGTTGATAAAAGATTTCAC 60.149 37.037 0.00 0.00 0.00 3.18
1817 2028 7.444183 TGATAAAAGATTTCACGGTTCTCACTT 59.556 33.333 0.00 0.00 0.00 3.16
1837 2050 4.078805 ACTTCCTAAAAGGGGGAAAACTGT 60.079 41.667 0.00 0.00 40.53 3.55
1953 2166 3.819337 TCGCTAGGCTATTATCACGAGTT 59.181 43.478 0.00 0.00 0.00 3.01
2121 2334 3.418995 TGAACGAGACTTGGCTACTACT 58.581 45.455 0.00 0.00 0.00 2.57
2122 2335 3.439476 TGAACGAGACTTGGCTACTACTC 59.561 47.826 0.00 0.00 0.00 2.59
2123 2336 2.367486 ACGAGACTTGGCTACTACTCC 58.633 52.381 0.00 0.00 0.00 3.85
2124 2337 1.677052 CGAGACTTGGCTACTACTCCC 59.323 57.143 0.00 0.00 0.00 4.30
2125 2338 2.684334 CGAGACTTGGCTACTACTCCCT 60.684 54.545 0.00 0.00 0.00 4.20
2126 2339 2.953648 GAGACTTGGCTACTACTCCCTC 59.046 54.545 0.00 0.00 0.00 4.30
2127 2340 2.033372 GACTTGGCTACTACTCCCTCC 58.967 57.143 0.00 0.00 0.00 4.30
2128 2341 1.033574 CTTGGCTACTACTCCCTCCG 58.966 60.000 0.00 0.00 0.00 4.63
2129 2342 0.333993 TTGGCTACTACTCCCTCCGT 59.666 55.000 0.00 0.00 0.00 4.69
2130 2343 0.333993 TGGCTACTACTCCCTCCGTT 59.666 55.000 0.00 0.00 0.00 4.44
2131 2344 1.031235 GGCTACTACTCCCTCCGTTC 58.969 60.000 0.00 0.00 0.00 3.95
2132 2345 1.031235 GCTACTACTCCCTCCGTTCC 58.969 60.000 0.00 0.00 0.00 3.62
2133 2346 1.684248 GCTACTACTCCCTCCGTTCCA 60.684 57.143 0.00 0.00 0.00 3.53
2134 2347 2.731572 CTACTACTCCCTCCGTTCCAA 58.268 52.381 0.00 0.00 0.00 3.53
2135 2348 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2136 2349 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2137 2350 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2138 2351 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2139 2352 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2140 2353 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2141 2354 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2142 2355 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2143 2356 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2144 2357 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2145 2358 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
2146 2359 3.319755 TCCGTTCCAAATTACTCGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
2147 2360 3.061322 CCGTTCCAAATTACTCGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
2148 2361 3.122948 CCGTTCCAAATTACTCGTCACAG 59.877 47.826 0.00 0.00 0.00 3.66
2149 2362 3.985279 CGTTCCAAATTACTCGTCACAGA 59.015 43.478 0.00 0.00 0.00 3.41
2150 2363 4.446385 CGTTCCAAATTACTCGTCACAGAA 59.554 41.667 0.00 0.00 0.00 3.02
2151 2364 5.050634 CGTTCCAAATTACTCGTCACAGAAA 60.051 40.000 0.00 0.00 0.00 2.52
2152 2365 6.347402 CGTTCCAAATTACTCGTCACAGAAAT 60.347 38.462 0.00 0.00 0.00 2.17
2153 2366 6.480524 TCCAAATTACTCGTCACAGAAATG 57.519 37.500 0.00 0.00 0.00 2.32
2154 2367 5.411361 TCCAAATTACTCGTCACAGAAATGG 59.589 40.000 0.00 0.00 0.00 3.16
2155 2368 5.411361 CCAAATTACTCGTCACAGAAATGGA 59.589 40.000 0.00 0.00 0.00 3.41
2156 2369 6.094048 CCAAATTACTCGTCACAGAAATGGAT 59.906 38.462 0.00 0.00 0.00 3.41
2157 2370 6.668541 AATTACTCGTCACAGAAATGGATG 57.331 37.500 0.00 0.00 0.00 3.51
2158 2371 3.685139 ACTCGTCACAGAAATGGATGT 57.315 42.857 0.00 0.00 0.00 3.06
2159 2372 4.801330 ACTCGTCACAGAAATGGATGTA 57.199 40.909 0.00 0.00 0.00 2.29
2160 2373 5.344743 ACTCGTCACAGAAATGGATGTAT 57.655 39.130 0.00 0.00 0.00 2.29
2161 2374 5.352284 ACTCGTCACAGAAATGGATGTATC 58.648 41.667 0.00 0.00 0.00 2.24
2162 2375 5.127845 ACTCGTCACAGAAATGGATGTATCT 59.872 40.000 0.00 0.00 0.00 1.98
2163 2376 6.321435 ACTCGTCACAGAAATGGATGTATCTA 59.679 38.462 0.00 0.00 0.00 1.98
2164 2377 7.107639 TCGTCACAGAAATGGATGTATCTAA 57.892 36.000 0.00 0.00 0.00 2.10
2165 2378 7.552459 TCGTCACAGAAATGGATGTATCTAAA 58.448 34.615 0.00 0.00 0.00 1.85
2166 2379 8.038351 TCGTCACAGAAATGGATGTATCTAAAA 58.962 33.333 0.00 0.00 0.00 1.52
2167 2380 8.116753 CGTCACAGAAATGGATGTATCTAAAAC 58.883 37.037 0.00 0.00 0.00 2.43
2168 2381 9.167311 GTCACAGAAATGGATGTATCTAAAACT 57.833 33.333 0.00 0.00 0.00 2.66
2197 2410 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
2198 2411 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
2199 2412 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
2200 2413 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
2201 2414 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
2202 2415 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
2203 2416 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2204 2417 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2205 2418 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
2206 2419 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
2207 2420 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
2208 2421 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
2209 2422 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
2210 2423 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
2211 2424 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
2212 2425 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
2213 2426 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
2214 2427 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
2455 2669 3.788333 ATTGATCAAATCACCTTGGCG 57.212 42.857 13.09 0.00 39.39 5.69
2489 2703 7.936847 TGTTAAGGATGTATGCCAACTTATAGG 59.063 37.037 0.00 0.00 31.07 2.57
2598 2813 5.654497 AGACGGTAAAACTAATCTAACCCG 58.346 41.667 0.00 0.00 38.81 5.28
2896 3111 8.435982 CACAATCTTCCCCTTTTCTATCTCTAT 58.564 37.037 0.00 0.00 0.00 1.98
2930 3145 7.362920 GCAGAGAACCATACCATGTTTAATGTT 60.363 37.037 0.00 0.00 0.00 2.71
2980 3195 8.856153 TTTCTTAATGTATGGTTTAGCTCACA 57.144 30.769 0.00 0.00 0.00 3.58
3088 3303 7.683437 ATGCTCCTCATATGTTCATGTAATG 57.317 36.000 1.90 0.00 38.68 1.90
3158 3373 5.921962 AAACTCAAAAACTTGGAAGCTCT 57.078 34.783 0.00 0.00 0.00 4.09
3176 3391 3.384789 GCTCTTGTTCCTTGGAAAAAGGT 59.615 43.478 24.31 0.00 38.55 3.50
3258 4476 5.627172 AGTAGTTCGTAAAATACACGCGTA 58.373 37.500 13.44 0.00 38.18 4.42
3300 4518 2.044555 CGTCGGGCTGTCACCTAGA 61.045 63.158 0.00 0.00 0.00 2.43
3427 4645 1.529948 CATTGGCGCCATCATCCCT 60.530 57.895 33.25 6.23 0.00 4.20
3444 4662 0.112606 CCTCGGGGAGTAGCCAGATA 59.887 60.000 0.00 0.00 38.95 1.98
3556 4774 1.550130 GGGGTCATGTTGGAGGACGA 61.550 60.000 0.00 0.00 36.15 4.20
3593 4811 2.582052 GTGAGGTGGTTGTTGGATTCA 58.418 47.619 0.00 0.00 0.00 2.57
3646 4864 4.347453 CTGCAACAACGGCCTGGC 62.347 66.667 11.05 11.05 0.00 4.85
3765 4983 3.102972 TGCATCTGGCTTCTTCTCTAGT 58.897 45.455 0.00 0.00 45.15 2.57
3961 5180 2.026905 GCCCTTGTTGAAGGTGTTGGA 61.027 52.381 0.00 0.00 46.84 3.53
3968 5187 4.277476 TGTTGAAGGTGTTGGATCAAAGT 58.723 39.130 0.00 0.00 33.93 2.66
4103 5332 4.082408 CGGTCTGTTGTCATAGGTTAGTGA 60.082 45.833 0.00 0.00 0.00 3.41
4207 5436 1.396996 GGCATCGATGTTACGCTTTGT 59.603 47.619 25.47 0.00 0.00 2.83
4622 5852 9.686683 AATCTAAATTAACTGCAGGAGTATGTT 57.313 29.630 19.93 4.50 33.09 2.71
4944 6177 1.497722 GGCGCACAAGCAACTACTC 59.502 57.895 10.83 0.00 42.27 2.59
4945 6178 1.497722 GCGCACAAGCAACTACTCC 59.502 57.895 0.30 0.00 42.27 3.85
4946 6179 1.912371 GCGCACAAGCAACTACTCCC 61.912 60.000 0.30 0.00 42.27 4.30
4950 6183 0.608640 ACAAGCAACTACTCCCTCCG 59.391 55.000 0.00 0.00 0.00 4.63
4951 6184 0.608640 CAAGCAACTACTCCCTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
4952 6185 0.896226 AAGCAACTACTCCCTCCGTC 59.104 55.000 0.00 0.00 0.00 4.79
4953 6186 0.971447 AGCAACTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
4954 6187 1.957765 GCAACTACTCCCTCCGTCCC 61.958 65.000 0.00 0.00 0.00 4.46
4955 6188 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
4956 6189 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
4957 6190 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4958 6191 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
4959 6192 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
4960 6193 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4961 6194 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4962 6195 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4963 6196 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4964 6197 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4965 6198 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4966 6199 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4967 6200 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4968 6201 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4969 6202 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4970 6203 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4971 6204 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4972 6205 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4973 6206 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4974 6207 6.438763 GTCCCAAAATAAGTGTCTCAACTTG 58.561 40.000 0.00 0.00 40.58 3.16
4975 6208 5.534654 TCCCAAAATAAGTGTCTCAACTTGG 59.465 40.000 0.00 0.00 40.58 3.61
4976 6209 5.301805 CCCAAAATAAGTGTCTCAACTTGGT 59.698 40.000 0.00 0.00 40.58 3.67
4977 6210 6.488683 CCCAAAATAAGTGTCTCAACTTGGTA 59.511 38.462 0.00 0.00 40.58 3.25
4978 6211 7.360361 CCAAAATAAGTGTCTCAACTTGGTAC 58.640 38.462 0.00 0.00 40.58 3.34
4979 6212 7.012894 CCAAAATAAGTGTCTCAACTTGGTACA 59.987 37.037 0.00 0.00 40.58 2.90
5029 6262 4.202377 TGAGACACTTATTTTGGGACGGAA 60.202 41.667 0.00 0.00 0.00 4.30
5170 6728 5.499139 TGTTGCAACTGACTTCCTAAAAG 57.501 39.130 28.61 0.00 0.00 2.27
5240 6841 6.563422 CATGGAATGGTGTTGGTACATTAAG 58.437 40.000 0.00 0.00 41.79 1.85
5295 6907 2.440409 GACATGTGTGGAAATCAGGCT 58.560 47.619 1.15 0.00 0.00 4.58
5446 7058 9.337396 TGAAAGTTTTGAGAGCTGAACTAATTA 57.663 29.630 0.00 0.00 32.44 1.40
5695 7311 7.484007 GCTTGATGCAAACATATATACAGATGC 59.516 37.037 0.00 5.79 42.31 3.91
5727 7343 7.217906 AGAGCAAGGTTAAATAGTATAGCCAC 58.782 38.462 0.00 0.00 0.00 5.01
5794 7410 6.213600 ACCTAATAGCCCACTCATACAATAGG 59.786 42.308 0.00 0.00 0.00 2.57
5850 7466 7.063544 GTGCTACAACTGGTTCTAAATCTACAG 59.936 40.741 0.00 0.00 0.00 2.74
5866 7482 0.466124 ACAGCCCGCTTATCTTCTCC 59.534 55.000 0.00 0.00 0.00 3.71
5972 7588 1.202359 TCCGTTTGCAGGAAAAACAGC 60.202 47.619 0.00 0.00 37.37 4.40
6044 7660 1.520342 GCTGCGTCCATCTCTGTCC 60.520 63.158 0.00 0.00 0.00 4.02
6172 7788 5.508200 AAACTGCGACACTTATTTTGGAA 57.492 34.783 0.00 0.00 0.00 3.53
6243 7859 2.346803 CGTTCATCAACTTGATCGGGT 58.653 47.619 0.92 0.00 34.28 5.28
6308 7924 1.563410 AGGAAGCCTGGAGAATGAAGG 59.437 52.381 0.00 0.00 29.57 3.46
6388 8004 3.265791 CAGAATGAAGCCTGTCAGGTAC 58.734 50.000 20.24 11.87 39.69 3.34
6423 8040 7.273598 GCCTTCGATTATTTTTCTTTCAAGGAC 59.726 37.037 0.00 0.00 30.13 3.85
6447 8064 3.272334 CGCCAGGTAATCAGCGGC 61.272 66.667 0.00 0.00 44.64 6.53
6457 8074 5.238432 CAGGTAATCAGCGGCAATATTTGTA 59.762 40.000 1.45 0.00 0.00 2.41
6460 8077 7.829211 AGGTAATCAGCGGCAATATTTGTATAT 59.171 33.333 1.45 0.00 0.00 0.86
6466 8083 7.443879 TCAGCGGCAATATTTGTATATGAAAGA 59.556 33.333 1.45 0.00 0.00 2.52
6571 8351 3.907894 GAACACCTTGCGTTCCATTAA 57.092 42.857 0.00 0.00 37.40 1.40
6572 8352 3.561503 GAACACCTTGCGTTCCATTAAC 58.438 45.455 0.00 0.00 37.40 2.01
6573 8353 2.858745 ACACCTTGCGTTCCATTAACT 58.141 42.857 0.00 0.00 35.81 2.24
6574 8354 4.010667 ACACCTTGCGTTCCATTAACTA 57.989 40.909 0.00 0.00 35.81 2.24
6575 8355 4.000988 ACACCTTGCGTTCCATTAACTAG 58.999 43.478 0.00 0.00 35.81 2.57
6588 8368 5.948162 TCCATTAACTAGAACTAGTGACCGT 59.052 40.000 14.07 2.64 44.96 4.83
6686 8468 0.391130 TAACACCATGACTCGCCAGC 60.391 55.000 0.00 0.00 0.00 4.85
6708 8490 3.110358 CAATGCGCTGGAACATTACATG 58.890 45.455 9.73 0.00 38.20 3.21
6762 8549 5.269554 TGAAACCCATTTGGAGAAGGTAT 57.730 39.130 0.00 0.00 37.39 2.73
6787 8576 2.297895 CCCCGGAACATGACTCCCA 61.298 63.158 0.73 0.00 0.00 4.37
6871 8660 4.155462 TGAAAAATGACTCTGCTCATGCTC 59.845 41.667 0.00 0.00 40.48 4.26
6903 8692 1.619654 TTCAGTCACTTGGGCATTGG 58.380 50.000 0.00 0.00 0.00 3.16
6977 8766 1.250328 TACGTTCAGACCACCATCGT 58.750 50.000 0.00 0.00 0.00 3.73
6979 8768 1.071019 CGTTCAGACCACCATCGTCG 61.071 60.000 0.00 0.00 35.33 5.12
6988 8777 2.821969 ACCACCATCGTCGTAAGTACTT 59.178 45.455 13.68 13.68 39.48 2.24
6990 8779 3.119743 CCACCATCGTCGTAAGTACTTGA 60.120 47.826 18.56 6.71 39.48 3.02
6991 8780 4.439700 CCACCATCGTCGTAAGTACTTGAT 60.440 45.833 18.56 8.78 39.48 2.57
6992 8781 4.733887 CACCATCGTCGTAAGTACTTGATC 59.266 45.833 18.56 7.63 39.48 2.92
6993 8782 4.639310 ACCATCGTCGTAAGTACTTGATCT 59.361 41.667 18.56 0.00 39.48 2.75
6994 8783 5.125097 ACCATCGTCGTAAGTACTTGATCTT 59.875 40.000 18.56 0.00 39.48 2.40
6995 8784 6.317140 ACCATCGTCGTAAGTACTTGATCTTA 59.683 38.462 18.56 0.54 39.48 2.10
6996 8785 7.013083 ACCATCGTCGTAAGTACTTGATCTTAT 59.987 37.037 18.56 2.87 39.48 1.73
6997 8786 8.501580 CCATCGTCGTAAGTACTTGATCTTATA 58.498 37.037 18.56 0.00 39.48 0.98
7021 8810 1.431633 TGGGACAGAGGGAGTAGTTCA 59.568 52.381 0.00 0.00 0.00 3.18
7022 8811 2.044492 TGGGACAGAGGGAGTAGTTCAT 59.956 50.000 0.00 0.00 0.00 2.57
7023 8812 3.108376 GGGACAGAGGGAGTAGTTCATT 58.892 50.000 0.00 0.00 0.00 2.57
7024 8813 3.133183 GGGACAGAGGGAGTAGTTCATTC 59.867 52.174 0.00 0.00 0.00 2.67
7035 8852 5.153950 AGTAGTTCATTCCCTCAGAACAC 57.846 43.478 0.00 0.00 43.00 3.32
7080 8897 2.925306 GCAGCTTGCATCTTTTGTCCTG 60.925 50.000 0.00 0.00 44.26 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.396556 AGGCCACGACCTTGGTTTTT 60.397 50.000 5.01 0.00 36.28 1.94
25 26 0.822121 GAGGCCACGACCTTGGTTTT 60.822 55.000 5.01 0.00 41.32 2.43
26 27 1.228154 GAGGCCACGACCTTGGTTT 60.228 57.895 5.01 0.00 41.32 3.27
27 28 2.430367 GAGGCCACGACCTTGGTT 59.570 61.111 5.01 0.00 41.32 3.67
28 29 3.637273 GGAGGCCACGACCTTGGT 61.637 66.667 5.01 0.00 41.32 3.67
29 30 4.410400 GGGAGGCCACGACCTTGG 62.410 72.222 5.01 0.00 41.32 3.61
30 31 4.760047 CGGGAGGCCACGACCTTG 62.760 72.222 5.01 0.00 41.32 3.61
57 58 0.605589 GTATTACCAGGCCGGGATGC 60.606 60.000 30.18 12.31 40.22 3.91
58 59 0.036306 GGTATTACCAGGCCGGGATG 59.964 60.000 30.18 5.72 38.42 3.51
59 60 1.131928 GGGTATTACCAGGCCGGGAT 61.132 60.000 30.18 15.00 41.02 3.85
60 61 1.767268 GGGTATTACCAGGCCGGGA 60.767 63.158 30.18 12.13 41.02 5.14
61 62 1.423794 ATGGGTATTACCAGGCCGGG 61.424 60.000 21.67 21.67 45.20 5.73
62 63 1.278127 CTATGGGTATTACCAGGCCGG 59.722 57.143 14.71 11.48 45.20 6.13
63 64 1.975680 ACTATGGGTATTACCAGGCCG 59.024 52.381 14.71 0.00 45.20 6.13
64 65 3.556423 CGAACTATGGGTATTACCAGGCC 60.556 52.174 14.71 0.00 45.20 5.19
65 66 3.070590 ACGAACTATGGGTATTACCAGGC 59.929 47.826 14.71 0.00 45.20 4.85
66 67 4.628074 CACGAACTATGGGTATTACCAGG 58.372 47.826 14.71 4.14 45.20 4.45
67 68 4.056050 GCACGAACTATGGGTATTACCAG 58.944 47.826 14.71 6.22 45.20 4.00
68 69 3.491276 CGCACGAACTATGGGTATTACCA 60.491 47.826 14.71 1.81 46.24 3.25
69 70 3.054878 CGCACGAACTATGGGTATTACC 58.945 50.000 4.11 4.11 37.60 2.85
70 71 3.488310 CACGCACGAACTATGGGTATTAC 59.512 47.826 0.00 0.00 40.90 1.89
71 72 3.130869 ACACGCACGAACTATGGGTATTA 59.869 43.478 0.00 0.00 40.90 0.98
72 73 2.093869 ACACGCACGAACTATGGGTATT 60.094 45.455 0.00 0.00 40.90 1.89
73 74 1.479323 ACACGCACGAACTATGGGTAT 59.521 47.619 0.00 0.00 40.90 2.73
74 75 0.889994 ACACGCACGAACTATGGGTA 59.110 50.000 0.00 0.00 40.90 3.69
75 76 0.669318 CACACGCACGAACTATGGGT 60.669 55.000 0.00 0.00 43.37 4.51
76 77 0.389296 TCACACGCACGAACTATGGG 60.389 55.000 0.00 0.00 36.17 4.00
77 78 0.992072 CTCACACGCACGAACTATGG 59.008 55.000 0.00 0.00 0.00 2.74
78 79 0.992072 CCTCACACGCACGAACTATG 59.008 55.000 0.00 0.00 0.00 2.23
79 80 0.108804 CCCTCACACGCACGAACTAT 60.109 55.000 0.00 0.00 0.00 2.12
80 81 1.287815 CCCTCACACGCACGAACTA 59.712 57.895 0.00 0.00 0.00 2.24
81 82 2.029073 CCCTCACACGCACGAACT 59.971 61.111 0.00 0.00 0.00 3.01
82 83 3.712881 GCCCTCACACGCACGAAC 61.713 66.667 0.00 0.00 0.00 3.95
83 84 4.980805 GGCCCTCACACGCACGAA 62.981 66.667 0.00 0.00 0.00 3.85
90 91 4.729918 CCCAGCTGGCCCTCACAC 62.730 72.222 28.39 0.00 0.00 3.82
94 95 3.984732 AAACCCCAGCTGGCCCTC 61.985 66.667 28.39 0.00 0.00 4.30
95 96 4.305956 CAAACCCCAGCTGGCCCT 62.306 66.667 28.39 10.09 0.00 5.19
101 102 2.203538 CACCAGCAAACCCCAGCT 60.204 61.111 0.00 0.00 42.94 4.24
102 103 3.994853 GCACCAGCAAACCCCAGC 61.995 66.667 0.00 0.00 41.58 4.85
103 104 3.305516 GGCACCAGCAAACCCCAG 61.306 66.667 0.00 0.00 44.61 4.45
104 105 2.086599 TATGGCACCAGCAAACCCCA 62.087 55.000 0.00 0.00 44.61 4.96
105 106 0.902516 TTATGGCACCAGCAAACCCC 60.903 55.000 0.00 0.00 44.61 4.95
106 107 0.532115 CTTATGGCACCAGCAAACCC 59.468 55.000 0.00 0.00 44.61 4.11
107 108 1.067635 CACTTATGGCACCAGCAAACC 60.068 52.381 0.00 0.00 44.61 3.27
108 109 1.613437 ACACTTATGGCACCAGCAAAC 59.387 47.619 0.00 0.00 44.61 2.93
109 110 1.885887 GACACTTATGGCACCAGCAAA 59.114 47.619 0.00 0.00 44.61 3.68
113 114 2.665649 TACGACACTTATGGCACCAG 57.334 50.000 0.00 0.00 30.51 4.00
117 118 6.399639 TGATCTTATACGACACTTATGGCA 57.600 37.500 0.00 0.00 30.51 4.92
126 127 5.861787 CACGGCATTATGATCTTATACGACA 59.138 40.000 0.00 0.00 0.00 4.35
146 147 0.309612 CGAAGACCCCAAAAACACGG 59.690 55.000 0.00 0.00 0.00 4.94
183 184 7.534085 TCTAATGTTGTTGGATCAACGATAC 57.466 36.000 4.30 4.49 46.13 2.24
187 188 5.088739 GCTTCTAATGTTGTTGGATCAACG 58.911 41.667 6.34 0.00 46.13 4.10
237 238 3.567797 GCGGAAGATCCAGCGCAC 61.568 66.667 11.47 0.00 35.91 5.34
244 245 0.537188 TCTTGTCCAGCGGAAGATCC 59.463 55.000 0.00 0.00 31.38 3.36
248 249 2.208431 GATGATCTTGTCCAGCGGAAG 58.792 52.381 0.00 0.00 31.38 3.46
254 255 4.809958 GTCACATCTGATGATCTTGTCCAG 59.190 45.833 23.59 0.00 0.00 3.86
261 262 4.161754 TCTTGCAGTCACATCTGATGATCT 59.838 41.667 23.59 14.25 37.61 2.75
265 266 3.312697 CCATCTTGCAGTCACATCTGATG 59.687 47.826 15.83 15.83 37.61 3.07
269 270 2.303890 TCACCATCTTGCAGTCACATCT 59.696 45.455 0.00 0.00 0.00 2.90
290 291 7.391620 TCAGTACCTGTTCGGATTTCTAAAAT 58.608 34.615 0.00 0.00 36.31 1.82
297 298 4.884668 TCTTCAGTACCTGTTCGGATTT 57.115 40.909 0.00 0.00 36.31 2.17
332 333 4.583489 CCTGGCTGCAATTCTCTTTATGAT 59.417 41.667 0.50 0.00 0.00 2.45
348 349 2.134630 AAACTCTCCTGCCCTGGCTG 62.135 60.000 9.97 8.91 42.51 4.85
356 357 2.999355 CACAGCTAGAAAACTCTCCTGC 59.001 50.000 0.00 0.00 0.00 4.85
369 370 6.825721 ACCCTAGAAAATGAAATCACAGCTAG 59.174 38.462 0.00 0.00 0.00 3.42
370 371 6.721318 ACCCTAGAAAATGAAATCACAGCTA 58.279 36.000 0.00 0.00 0.00 3.32
371 372 5.574188 ACCCTAGAAAATGAAATCACAGCT 58.426 37.500 0.00 0.00 0.00 4.24
372 373 5.447818 CGACCCTAGAAAATGAAATCACAGC 60.448 44.000 0.00 0.00 0.00 4.40
374 375 5.556915 ACGACCCTAGAAAATGAAATCACA 58.443 37.500 0.00 0.00 0.00 3.58
388 390 2.500098 TCCCAATTCAGAACGACCCTAG 59.500 50.000 0.00 0.00 0.00 3.02
395 397 2.426522 TGAGCTTCCCAATTCAGAACG 58.573 47.619 0.00 0.00 0.00 3.95
408 410 9.631452 AGAAATTTTTGCTTAGTTATGAGCTTC 57.369 29.630 0.00 0.00 38.80 3.86
421 423 8.837389 AGTCTAACGAACTAGAAATTTTTGCTT 58.163 29.630 0.00 0.00 29.74 3.91
422 424 8.379457 AGTCTAACGAACTAGAAATTTTTGCT 57.621 30.769 0.00 0.00 29.74 3.91
423 425 9.447040 AAAGTCTAACGAACTAGAAATTTTTGC 57.553 29.630 0.00 0.00 29.74 3.68
425 427 9.946165 CCAAAGTCTAACGAACTAGAAATTTTT 57.054 29.630 0.00 0.00 29.74 1.94
426 428 9.117183 ACCAAAGTCTAACGAACTAGAAATTTT 57.883 29.630 0.00 0.00 29.74 1.82
427 429 8.672823 ACCAAAGTCTAACGAACTAGAAATTT 57.327 30.769 0.00 0.00 29.74 1.82
428 430 7.115947 CGACCAAAGTCTAACGAACTAGAAATT 59.884 37.037 0.00 0.00 41.16 1.82
429 431 6.585322 CGACCAAAGTCTAACGAACTAGAAAT 59.415 38.462 0.00 0.00 41.16 2.17
430 432 5.916883 CGACCAAAGTCTAACGAACTAGAAA 59.083 40.000 0.00 0.00 41.16 2.52
431 433 5.455392 CGACCAAAGTCTAACGAACTAGAA 58.545 41.667 0.00 0.00 41.16 2.10
432 434 4.614535 GCGACCAAAGTCTAACGAACTAGA 60.615 45.833 0.00 0.00 41.16 2.43
433 435 3.607209 GCGACCAAAGTCTAACGAACTAG 59.393 47.826 0.00 0.00 41.16 2.57
434 436 3.568538 GCGACCAAAGTCTAACGAACTA 58.431 45.455 0.00 0.00 41.16 2.24
435 437 2.401351 GCGACCAAAGTCTAACGAACT 58.599 47.619 0.00 0.00 41.16 3.01
436 438 1.458445 GGCGACCAAAGTCTAACGAAC 59.542 52.381 0.00 0.00 41.16 3.95
437 439 1.068895 TGGCGACCAAAGTCTAACGAA 59.931 47.619 0.00 0.00 41.16 3.85
438 440 0.675083 TGGCGACCAAAGTCTAACGA 59.325 50.000 0.00 0.00 41.16 3.85
439 441 0.788391 GTGGCGACCAAAGTCTAACG 59.212 55.000 0.00 0.00 41.16 3.18
440 442 2.165319 AGTGGCGACCAAAGTCTAAC 57.835 50.000 0.00 0.00 41.16 2.34
441 443 2.158871 ACAAGTGGCGACCAAAGTCTAA 60.159 45.455 0.00 0.00 41.16 2.10
442 444 1.414919 ACAAGTGGCGACCAAAGTCTA 59.585 47.619 0.00 0.00 41.16 2.59
443 445 0.180406 ACAAGTGGCGACCAAAGTCT 59.820 50.000 0.00 0.00 41.16 3.24
444 446 0.307760 CACAAGTGGCGACCAAAGTC 59.692 55.000 0.00 0.00 39.83 3.01
445 447 1.101049 CCACAAGTGGCGACCAAAGT 61.101 55.000 6.27 0.00 44.73 2.66
446 448 1.654220 CCACAAGTGGCGACCAAAG 59.346 57.895 6.27 0.00 44.73 2.77
447 449 3.834726 CCACAAGTGGCGACCAAA 58.165 55.556 6.27 0.00 44.73 3.28
456 458 0.754957 TGGAAACCCAGCCACAAGTG 60.755 55.000 0.00 0.00 0.00 3.16
457 459 0.188342 ATGGAAACCCAGCCACAAGT 59.812 50.000 0.00 0.00 36.92 3.16
458 460 0.604578 CATGGAAACCCAGCCACAAG 59.395 55.000 0.00 0.00 36.92 3.16
459 461 0.187117 TCATGGAAACCCAGCCACAA 59.813 50.000 0.00 0.00 36.92 3.33
460 462 0.539438 GTCATGGAAACCCAGCCACA 60.539 55.000 0.00 0.00 36.92 4.17
461 463 1.250840 GGTCATGGAAACCCAGCCAC 61.251 60.000 0.00 0.00 36.92 5.01
462 464 1.076549 GGTCATGGAAACCCAGCCA 59.923 57.895 0.00 0.00 37.09 4.75
463 465 4.018409 GGTCATGGAAACCCAGCC 57.982 61.111 0.00 0.00 37.09 4.85
468 470 1.850345 TGATAGGGGGTCATGGAAACC 59.150 52.381 0.00 0.00 35.97 3.27
469 471 3.884037 ATGATAGGGGGTCATGGAAAC 57.116 47.619 0.00 0.00 35.12 2.78
470 472 3.140144 GGAATGATAGGGGGTCATGGAAA 59.860 47.826 0.00 0.00 36.49 3.13
471 473 2.716424 GGAATGATAGGGGGTCATGGAA 59.284 50.000 0.00 0.00 36.49 3.53
472 474 2.089408 AGGAATGATAGGGGGTCATGGA 60.089 50.000 0.00 0.00 36.49 3.41
473 475 2.040813 CAGGAATGATAGGGGGTCATGG 59.959 54.545 0.00 0.00 36.49 3.66
474 476 2.981784 TCAGGAATGATAGGGGGTCATG 59.018 50.000 0.00 0.00 36.49 3.07
483 485 9.014297 AGGTTTACAAAAAGTCAGGAATGATAG 57.986 33.333 0.00 0.00 0.00 2.08
538 540 8.976471 TGTGTGCAATTGTATTCTGTTTTATTG 58.024 29.630 7.40 0.00 0.00 1.90
550 552 3.577667 GCATGTGTGTGTGCAATTGTAT 58.422 40.909 7.40 0.00 40.94 2.29
553 555 0.779408 CGCATGTGTGTGTGCAATTG 59.221 50.000 0.00 0.00 41.32 2.32
559 561 0.601046 AGTCTCCGCATGTGTGTGTG 60.601 55.000 5.38 0.00 33.99 3.82
563 565 0.246360 TGGTAGTCTCCGCATGTGTG 59.754 55.000 5.38 0.00 0.00 3.82
565 567 2.093306 TTTGGTAGTCTCCGCATGTG 57.907 50.000 0.00 0.00 0.00 3.21
575 577 6.695713 GTCATGTTTTGGTCTTTTTGGTAGTC 59.304 38.462 0.00 0.00 0.00 2.59
576 578 6.153680 TGTCATGTTTTGGTCTTTTTGGTAGT 59.846 34.615 0.00 0.00 0.00 2.73
583 585 6.469782 ACATCTGTCATGTTTTGGTCTTTT 57.530 33.333 0.00 0.00 0.00 2.27
608 610 6.071051 GGGGGTTATTTCTGCAATGTTTTCTA 60.071 38.462 0.00 0.00 0.00 2.10
639 641 8.960064 ACCCTGGAGGAGTTATTTATCATATTT 58.040 33.333 0.00 0.00 39.89 1.40
640 642 8.525729 ACCCTGGAGGAGTTATTTATCATATT 57.474 34.615 0.00 0.00 39.89 1.28
654 656 3.775654 GCACGGACCCTGGAGGAG 61.776 72.222 0.00 0.00 39.89 3.69
655 657 4.631740 TGCACGGACCCTGGAGGA 62.632 66.667 0.00 0.00 39.89 3.71
661 663 1.826487 GGTTGTTTGCACGGACCCT 60.826 57.895 0.00 0.00 0.00 4.34
666 668 2.126467 CAGATTTGGTTGTTTGCACGG 58.874 47.619 0.00 0.00 0.00 4.94
668 670 4.504097 GTCTTCAGATTTGGTTGTTTGCAC 59.496 41.667 0.00 0.00 0.00 4.57
711 713 1.901591 TCCTTAGTGTTCGTCTCGGT 58.098 50.000 0.00 0.00 0.00 4.69
719 721 4.377533 GCTTCGCTTCTTTCCTTAGTGTTC 60.378 45.833 0.00 0.00 0.00 3.18
720 722 3.498777 GCTTCGCTTCTTTCCTTAGTGTT 59.501 43.478 0.00 0.00 0.00 3.32
721 723 3.067833 GCTTCGCTTCTTTCCTTAGTGT 58.932 45.455 0.00 0.00 0.00 3.55
725 727 2.224426 TGGTGCTTCGCTTCTTTCCTTA 60.224 45.455 0.00 0.00 0.00 2.69
729 731 0.110010 GCTGGTGCTTCGCTTCTTTC 60.110 55.000 0.00 0.00 36.03 2.62
733 735 0.242017 ATTTGCTGGTGCTTCGCTTC 59.758 50.000 0.00 0.00 40.48 3.86
736 738 0.039256 TTGATTTGCTGGTGCTTCGC 60.039 50.000 0.00 0.00 40.48 4.70
760 762 2.545526 AGTGTTGTTCAACGCTGATCTG 59.454 45.455 24.50 0.00 41.49 2.90
764 766 4.948608 TTAAAGTGTTGTTCAACGCTGA 57.051 36.364 25.39 16.72 42.14 4.26
770 772 9.984190 AGGTTTAAACTTTAAAGTGTTGTTCAA 57.016 25.926 21.22 7.21 39.66 2.69
771 773 9.984190 AAGGTTTAAACTTTAAAGTGTTGTTCA 57.016 25.926 21.22 1.39 39.66 3.18
773 775 9.984190 TCAAGGTTTAAACTTTAAAGTGTTGTT 57.016 25.926 21.22 13.71 39.66 2.83
775 777 9.849166 TCTCAAGGTTTAAACTTTAAAGTGTTG 57.151 29.630 21.22 9.96 39.66 3.33
776 778 9.850628 GTCTCAAGGTTTAAACTTTAAAGTGTT 57.149 29.630 21.22 17.62 39.66 3.32
777 779 9.239551 AGTCTCAAGGTTTAAACTTTAAAGTGT 57.760 29.630 21.22 18.15 39.66 3.55
778 780 9.717892 GAGTCTCAAGGTTTAAACTTTAAAGTG 57.282 33.333 21.22 6.04 39.66 3.16
779 781 8.900781 GGAGTCTCAAGGTTTAAACTTTAAAGT 58.099 33.333 15.22 15.22 42.04 2.66
780 782 9.121658 AGGAGTCTCAAGGTTTAAACTTTAAAG 57.878 33.333 17.50 13.76 0.00 1.85
803 839 9.016438 AGCGGTAAATCAAAACTTTATTAAGGA 57.984 29.630 0.00 0.00 35.61 3.36
1084 1155 1.971695 GAGAGGCGTTGGTTTGGGG 60.972 63.158 0.00 0.00 0.00 4.96
1164 1235 1.709994 GGGAGGAATCCCGGCAGATT 61.710 60.000 5.72 5.72 40.59 2.40
1220 1291 1.336517 CCGTTGCTAGGTCGTTCTTGA 60.337 52.381 0.00 0.00 0.00 3.02
1368 1439 0.676782 ATACTGGCGTCTGGTTTGGC 60.677 55.000 0.00 0.00 0.00 4.52
1424 1495 7.280205 ACAGTTCAATGGTCGATAAATTCCTAC 59.720 37.037 0.00 0.00 0.00 3.18
1425 1496 7.335627 ACAGTTCAATGGTCGATAAATTCCTA 58.664 34.615 0.00 0.00 0.00 2.94
1478 1561 2.542595 CACTGGTACTGAAACAACGACC 59.457 50.000 0.00 0.00 0.00 4.79
1519 1609 5.964477 AGGATTCTAACAGGTAAGGATGTGA 59.036 40.000 0.00 0.00 0.00 3.58
1531 1621 7.278868 GCGGGATATTAATCAGGATTCTAACAG 59.721 40.741 0.00 0.00 33.41 3.16
1563 1655 6.953520 ACACTTTTGGATTAATCAGGATTCCA 59.046 34.615 17.07 2.76 32.50 3.53
1663 1874 3.262660 CAGATGGCTGCCTATTCTATGGA 59.737 47.826 21.03 0.00 34.95 3.41
1732 1943 3.318839 ACCGTTGCCATGATTGGATTATG 59.681 43.478 0.00 0.00 46.92 1.90
1740 1951 0.608856 TGCTGACCGTTGCCATGATT 60.609 50.000 0.00 0.00 0.00 2.57
1775 1986 1.955451 ATCAACACCAATGCCCCAAT 58.045 45.000 0.00 0.00 0.00 3.16
1781 1992 7.410728 CGTGAAATCTTTTATCAACACCAATGC 60.411 37.037 0.00 0.00 0.00 3.56
1803 2014 4.502604 CCTTTTAGGAAGTGAGAACCGTGA 60.503 45.833 0.00 0.00 37.67 4.35
1806 2017 3.335579 CCCTTTTAGGAAGTGAGAACCG 58.664 50.000 0.00 0.00 37.67 4.44
1817 2028 4.546224 AACAGTTTTCCCCCTTTTAGGA 57.454 40.909 0.00 0.00 37.67 2.94
1837 2050 1.634973 TGGCTCATCTCACCCATGAAA 59.365 47.619 0.00 0.00 33.30 2.69
1953 2166 4.038282 TGGTTTTAGCGTCTAGAGTCACAA 59.962 41.667 0.00 0.00 0.00 3.33
2082 2295 6.042777 TCGTTCAAATGTATAGGAAGCTCAG 58.957 40.000 0.00 0.00 0.00 3.35
2121 2334 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2122 2335 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2123 2336 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2124 2337 3.367025 GTGACGAGTAATTTGGAACGGAG 59.633 47.826 0.00 0.00 0.00 4.63
2125 2338 3.243805 TGTGACGAGTAATTTGGAACGGA 60.244 43.478 0.00 0.00 0.00 4.69
2126 2339 3.061322 TGTGACGAGTAATTTGGAACGG 58.939 45.455 0.00 0.00 0.00 4.44
2127 2340 3.985279 TCTGTGACGAGTAATTTGGAACG 59.015 43.478 0.00 0.00 0.00 3.95
2128 2341 5.917541 TTCTGTGACGAGTAATTTGGAAC 57.082 39.130 0.00 0.00 0.00 3.62
2129 2342 6.072728 CCATTTCTGTGACGAGTAATTTGGAA 60.073 38.462 0.00 0.00 0.00 3.53
2130 2343 5.411361 CCATTTCTGTGACGAGTAATTTGGA 59.589 40.000 0.00 0.00 0.00 3.53
2131 2344 5.411361 TCCATTTCTGTGACGAGTAATTTGG 59.589 40.000 0.00 0.00 0.00 3.28
2132 2345 6.480524 TCCATTTCTGTGACGAGTAATTTG 57.519 37.500 0.00 0.00 0.00 2.32
2133 2346 6.655003 ACATCCATTTCTGTGACGAGTAATTT 59.345 34.615 0.00 0.00 0.00 1.82
2134 2347 6.173339 ACATCCATTTCTGTGACGAGTAATT 58.827 36.000 0.00 0.00 0.00 1.40
2135 2348 5.734720 ACATCCATTTCTGTGACGAGTAAT 58.265 37.500 0.00 0.00 0.00 1.89
2136 2349 5.147330 ACATCCATTTCTGTGACGAGTAA 57.853 39.130 0.00 0.00 0.00 2.24
2137 2350 4.801330 ACATCCATTTCTGTGACGAGTA 57.199 40.909 0.00 0.00 0.00 2.59
2138 2351 3.685139 ACATCCATTTCTGTGACGAGT 57.315 42.857 0.00 0.00 0.00 4.18
2139 2352 5.595885 AGATACATCCATTTCTGTGACGAG 58.404 41.667 0.00 0.00 0.00 4.18
2140 2353 5.598416 AGATACATCCATTTCTGTGACGA 57.402 39.130 0.00 0.00 0.00 4.20
2141 2354 7.770801 TTTAGATACATCCATTTCTGTGACG 57.229 36.000 0.00 0.00 0.00 4.35
2142 2355 9.167311 AGTTTTAGATACATCCATTTCTGTGAC 57.833 33.333 0.00 0.00 0.00 3.67
2171 2384 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
2172 2385 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
2173 2386 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2174 2387 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2175 2388 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2176 2389 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
2177 2390 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
2178 2391 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2179 2392 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2180 2393 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2181 2394 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2182 2395 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2183 2396 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2184 2397 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2185 2398 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2186 2399 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2187 2400 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
2188 2401 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
2189 2402 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
2190 2403 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
2191 2404 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
2192 2405 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
2193 2406 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
2194 2407 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
2195 2408 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2196 2409 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2197 2410 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2198 2411 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2199 2412 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2200 2413 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2201 2414 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2202 2415 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2203 2416 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2204 2417 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2205 2418 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
2206 2419 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
2207 2420 0.967380 GGTACTCCCTCCGTTCCGAA 60.967 60.000 0.00 0.00 0.00 4.30
2208 2421 1.379044 GGTACTCCCTCCGTTCCGA 60.379 63.158 0.00 0.00 0.00 4.55
2209 2422 1.379576 AGGTACTCCCTCCGTTCCG 60.380 63.158 0.00 0.00 40.71 4.30
2210 2423 4.781264 AGGTACTCCCTCCGTTCC 57.219 61.111 0.00 0.00 40.71 3.62
2219 2432 6.573288 AGAGGATTCTGGTTTGAGGTACTCC 61.573 48.000 0.00 0.00 43.51 3.85
2220 2433 4.468153 AGAGGATTCTGGTTTGAGGTACTC 59.532 45.833 0.00 0.00 44.07 2.59
2221 2434 4.223923 CAGAGGATTCTGGTTTGAGGTACT 59.776 45.833 0.00 0.00 45.79 2.73
2222 2435 4.508662 CAGAGGATTCTGGTTTGAGGTAC 58.491 47.826 0.00 0.00 45.79 3.34
2223 2436 4.826274 CAGAGGATTCTGGTTTGAGGTA 57.174 45.455 0.00 0.00 45.79 3.08
2224 2437 3.710209 CAGAGGATTCTGGTTTGAGGT 57.290 47.619 0.00 0.00 45.79 3.85
2238 2452 1.344438 CACACCTAAGCACACAGAGGA 59.656 52.381 0.00 0.00 33.04 3.71
2455 2669 2.215942 ACATCCTTAACACTTGCCCC 57.784 50.000 0.00 0.00 0.00 5.80
2896 3111 2.957402 ATGGTTCTCTGCTGAAACCA 57.043 45.000 26.51 26.51 33.02 3.67
3010 3225 6.040842 AGACAACCATTTTAGTTCAGCAACAT 59.959 34.615 0.00 0.00 34.60 2.71
3088 3303 6.656693 TCAAATCCAAAGAGAAGTGGAAGATC 59.343 38.462 0.00 0.00 46.78 2.75
3149 3364 1.774254 TCCAAGGAACAAGAGCTTCCA 59.226 47.619 4.25 0.00 39.91 3.53
3158 3373 4.959839 AGCTAACCTTTTTCCAAGGAACAA 59.040 37.500 7.64 0.54 39.81 2.83
3176 3391 5.103940 AGGGAATGCTTTCAGGATAAGCTAA 60.104 40.000 13.72 0.00 46.30 3.09
3196 3411 1.006281 TCTACCCAGCTCGTTAAGGGA 59.994 52.381 11.38 0.00 44.30 4.20
3258 4476 1.524621 GCACCACCAGCGCATAGAT 60.525 57.895 11.47 0.00 0.00 1.98
3286 4504 1.681486 GGCTCTCTAGGTGACAGCCC 61.681 65.000 0.00 0.00 46.89 5.19
3427 4645 2.648304 ACTATATCTGGCTACTCCCCGA 59.352 50.000 0.00 0.00 0.00 5.14
3572 4790 1.886542 GAATCCAACAACCACCTCACC 59.113 52.381 0.00 0.00 0.00 4.02
3593 4811 1.080705 GTCGTTGCAGCTACCTCGT 60.081 57.895 1.07 0.00 0.00 4.18
3646 4864 2.166459 TGGACGTAAGCTGATCTTCCAG 59.834 50.000 7.02 0.00 45.62 3.86
3686 4904 2.861317 ACCTCCTTTGATCCCCATCAAT 59.139 45.455 0.00 0.00 46.36 2.57
3765 4983 4.217210 CCAAGCCCACCCACACCA 62.217 66.667 0.00 0.00 0.00 4.17
3961 5180 8.833231 TTTCATCTTCGAAGTCTAACTTTGAT 57.167 30.769 23.85 4.37 45.29 2.57
3968 5187 6.947464 AGGGATTTTCATCTTCGAAGTCTAA 58.053 36.000 23.85 13.43 0.00 2.10
4103 5332 3.266772 TGGCAGGTTCTCCACAATTCTAT 59.733 43.478 0.00 0.00 35.89 1.98
4171 5400 4.092821 TCGATGCCGAACAAATCAGTTTAG 59.907 41.667 0.00 0.00 42.51 1.85
4689 5919 8.664669 ATTTATAAAGTTGACCAGGGTTTGAT 57.335 30.769 3.94 0.00 0.00 2.57
4909 6142 3.059257 TGCGCCGCATACAACTTATTATG 60.059 43.478 8.16 0.00 31.71 1.90
4944 6177 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4945 6178 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4946 6179 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4950 6183 6.438763 CAAGTTGAGACACTTATTTTGGGAC 58.561 40.000 0.00 0.00 35.10 4.46
4951 6184 5.534654 CCAAGTTGAGACACTTATTTTGGGA 59.465 40.000 3.87 0.00 35.10 4.37
4952 6185 5.301805 ACCAAGTTGAGACACTTATTTTGGG 59.698 40.000 3.87 0.00 37.46 4.12
4953 6186 6.391227 ACCAAGTTGAGACACTTATTTTGG 57.609 37.500 3.87 0.00 35.10 3.28
4954 6187 7.925993 TGTACCAAGTTGAGACACTTATTTTG 58.074 34.615 3.87 0.00 35.10 2.44
4955 6188 8.514330 TTGTACCAAGTTGAGACACTTATTTT 57.486 30.769 3.87 0.00 35.10 1.82
4956 6189 8.514330 TTTGTACCAAGTTGAGACACTTATTT 57.486 30.769 3.87 0.00 35.10 1.40
4957 6190 7.773690 ACTTTGTACCAAGTTGAGACACTTATT 59.226 33.333 6.52 0.00 35.10 1.40
4958 6191 7.280356 ACTTTGTACCAAGTTGAGACACTTAT 58.720 34.615 6.52 0.00 35.10 1.73
4959 6192 6.646267 ACTTTGTACCAAGTTGAGACACTTA 58.354 36.000 6.52 0.00 35.10 2.24
4960 6193 5.497474 ACTTTGTACCAAGTTGAGACACTT 58.503 37.500 6.52 0.00 37.49 3.16
4961 6194 5.099042 ACTTTGTACCAAGTTGAGACACT 57.901 39.130 6.52 0.00 0.00 3.55
4962 6195 5.813080 AACTTTGTACCAAGTTGAGACAC 57.187 39.130 20.83 0.00 37.79 3.67
4986 6219 9.135189 TGTCTCAACTTGGTACTAACTTTAGTA 57.865 33.333 4.98 4.98 43.36 1.82
4987 6220 7.924947 GTGTCTCAACTTGGTACTAACTTTAGT 59.075 37.037 6.85 6.85 45.39 2.24
4988 6221 8.142551 AGTGTCTCAACTTGGTACTAACTTTAG 58.857 37.037 0.00 0.00 36.82 1.85
4989 6222 8.015185 AGTGTCTCAACTTGGTACTAACTTTA 57.985 34.615 0.00 0.00 0.00 1.85
4990 6223 6.885922 AGTGTCTCAACTTGGTACTAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
4991 6224 6.481434 AGTGTCTCAACTTGGTACTAACTT 57.519 37.500 0.00 0.00 0.00 2.66
4992 6225 6.481434 AAGTGTCTCAACTTGGTACTAACT 57.519 37.500 0.00 0.00 38.95 2.24
4993 6226 8.828688 AATAAGTGTCTCAACTTGGTACTAAC 57.171 34.615 0.00 0.00 40.58 2.34
4994 6227 9.841295 AAAATAAGTGTCTCAACTTGGTACTAA 57.159 29.630 0.00 0.00 40.58 2.24
4995 6228 9.268268 CAAAATAAGTGTCTCAACTTGGTACTA 57.732 33.333 0.00 0.00 40.58 1.82
4996 6229 7.228706 CCAAAATAAGTGTCTCAACTTGGTACT 59.771 37.037 0.00 0.00 40.58 2.73
4997 6230 7.360361 CCAAAATAAGTGTCTCAACTTGGTAC 58.640 38.462 0.00 0.00 40.58 3.34
4998 6231 6.488683 CCCAAAATAAGTGTCTCAACTTGGTA 59.511 38.462 0.00 0.00 40.58 3.25
4999 6232 5.301805 CCCAAAATAAGTGTCTCAACTTGGT 59.698 40.000 0.00 0.00 40.58 3.67
5000 6233 5.534654 TCCCAAAATAAGTGTCTCAACTTGG 59.465 40.000 0.00 0.00 40.58 3.61
5001 6234 6.438763 GTCCCAAAATAAGTGTCTCAACTTG 58.561 40.000 0.00 0.00 40.58 3.16
5029 6262 7.362401 GCATGTGATTCTCAAAACAATACTCCT 60.362 37.037 0.00 0.00 0.00 3.69
5170 6728 7.095439 GGTGATGCACTAATAATAGTCTGAAGC 60.095 40.741 0.00 0.00 40.44 3.86
5295 6907 9.364989 CTTGGAATTGTGAAAAACAGAGTAAAA 57.635 29.630 0.00 0.00 40.74 1.52
5433 7045 6.951971 ACAGAGAATGGTAATTAGTTCAGCT 58.048 36.000 7.52 0.00 0.00 4.24
5446 7058 7.346751 TCTGCTTTTAAAAACAGAGAATGGT 57.653 32.000 23.68 0.00 36.50 3.55
5461 7073 5.980715 CGGCCTTTAAACTTTTCTGCTTTTA 59.019 36.000 0.00 0.00 0.00 1.52
5473 7085 6.008331 AGGAAATTAGTTCGGCCTTTAAACT 58.992 36.000 0.00 7.97 37.08 2.66
5695 7311 2.773993 TTAACCTTGCTCTAACGGGG 57.226 50.000 0.00 0.00 0.00 5.73
5727 7343 4.576216 ACTCCATATAGCTGAGTGTTCG 57.424 45.455 0.00 0.00 37.92 3.95
5794 7410 9.970243 CATACAGTAGCGTATAAGTATGACTAC 57.030 37.037 11.43 0.00 40.54 2.73
5850 7466 0.470341 AAGGGAGAAGATAAGCGGGC 59.530 55.000 0.00 0.00 0.00 6.13
5866 7482 8.519799 TTATATTTTTGCCTAGTTGGAGAAGG 57.480 34.615 0.00 0.00 38.35 3.46
5970 7586 2.433446 CAGTGGCAGAACCCAGCT 59.567 61.111 0.00 0.00 37.83 4.24
6172 7788 5.021458 TCTTCTAAATTGTACTCCCTCCGT 58.979 41.667 0.00 0.00 0.00 4.69
6294 7910 2.691409 TAACGCCTTCATTCTCCAGG 57.309 50.000 0.00 0.00 0.00 4.45
6308 7924 9.210426 CTAAGTTGATGTAATGTTGATTAACGC 57.790 33.333 0.00 0.00 39.71 4.84
6367 7983 2.486472 ACCTGACAGGCTTCATTCTG 57.514 50.000 21.95 0.00 39.63 3.02
6369 7985 3.055819 TGAGTACCTGACAGGCTTCATTC 60.056 47.826 21.95 10.65 39.63 2.67
6388 8004 5.490139 AAATAATCGAAGGCACACATGAG 57.510 39.130 0.00 0.00 0.00 2.90
6423 8040 1.887707 GATTACCTGGCGGGCTTCG 60.888 63.158 13.63 0.00 39.10 3.79
6476 8093 8.851145 AGTATGCCAGTATAATATCACCGATAG 58.149 37.037 0.00 0.00 0.00 2.08
6477 8094 8.762481 AGTATGCCAGTATAATATCACCGATA 57.238 34.615 0.00 0.00 0.00 2.92
6478 8095 7.561722 AGAGTATGCCAGTATAATATCACCGAT 59.438 37.037 0.00 0.00 0.00 4.18
6479 8096 6.890268 AGAGTATGCCAGTATAATATCACCGA 59.110 38.462 0.00 0.00 0.00 4.69
6562 8342 6.750963 CGGTCACTAGTTCTAGTTAATGGAAC 59.249 42.308 9.45 0.76 46.74 3.62
6570 8350 2.230750 GCCACGGTCACTAGTTCTAGTT 59.769 50.000 9.45 0.00 0.00 2.24
6571 8351 1.817447 GCCACGGTCACTAGTTCTAGT 59.183 52.381 6.67 6.67 0.00 2.57
6572 8352 1.816835 TGCCACGGTCACTAGTTCTAG 59.183 52.381 0.00 5.43 0.00 2.43
6573 8353 1.913778 TGCCACGGTCACTAGTTCTA 58.086 50.000 0.00 0.00 0.00 2.10
6574 8354 1.045407 TTGCCACGGTCACTAGTTCT 58.955 50.000 0.00 0.00 0.00 3.01
6575 8355 1.145803 GTTGCCACGGTCACTAGTTC 58.854 55.000 0.00 0.00 0.00 3.01
6605 8385 0.306840 CTGGATGTGATGCGTGATGC 59.693 55.000 0.00 0.00 46.70 3.91
6616 8396 1.757118 ACGGATCTACCACTGGATGTG 59.243 52.381 0.71 0.00 45.80 3.21
6686 8468 1.472082 TGTAATGTTCCAGCGCATTGG 59.528 47.619 11.47 10.25 39.70 3.16
6708 8490 0.605319 TTTGATCACTGTCCCCGTGC 60.605 55.000 0.00 0.00 32.54 5.34
6787 8576 2.349886 GCAATTTCGATCGAGCTCAACT 59.650 45.455 18.54 0.00 0.00 3.16
6825 8614 2.092753 CACTGATTGCCTCCCACTACAT 60.093 50.000 0.00 0.00 0.00 2.29
6871 8660 3.567164 AGTGACTGAATGGCAAGAGTTTG 59.433 43.478 0.00 0.00 34.07 2.93
6988 8777 7.487338 TCCCTCTGTCCCATAATATAAGATCA 58.513 38.462 0.00 0.00 0.00 2.92
6990 8779 7.491681 ACTCCCTCTGTCCCATAATATAAGAT 58.508 38.462 0.00 0.00 0.00 2.40
6991 8780 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
6992 8781 7.896496 ACTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
6993 8782 7.776745 ACTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
6994 8783 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
6995 8784 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
6996 8785 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
6997 8786 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
6998 8787 4.264668 TGAACTACTCCCTCTGTCCCATAA 60.265 45.833 0.00 0.00 0.00 1.90
6999 8788 3.271225 TGAACTACTCCCTCTGTCCCATA 59.729 47.826 0.00 0.00 0.00 2.74
7000 8789 2.044492 TGAACTACTCCCTCTGTCCCAT 59.956 50.000 0.00 0.00 0.00 4.00
7001 8790 1.431633 TGAACTACTCCCTCTGTCCCA 59.568 52.381 0.00 0.00 0.00 4.37
7002 8791 2.233305 TGAACTACTCCCTCTGTCCC 57.767 55.000 0.00 0.00 0.00 4.46
7003 8792 3.133183 GGAATGAACTACTCCCTCTGTCC 59.867 52.174 0.00 0.00 0.00 4.02
7004 8793 3.133183 GGGAATGAACTACTCCCTCTGTC 59.867 52.174 0.00 0.00 44.81 3.51
7005 8794 3.108376 GGGAATGAACTACTCCCTCTGT 58.892 50.000 0.00 0.00 44.81 3.41
7006 8795 3.828875 GGGAATGAACTACTCCCTCTG 57.171 52.381 0.00 0.00 44.81 3.35
7021 8810 1.912043 CTGGAGGTGTTCTGAGGGAAT 59.088 52.381 0.00 0.00 36.24 3.01
7022 8811 1.352083 CTGGAGGTGTTCTGAGGGAA 58.648 55.000 0.00 0.00 0.00 3.97
7023 8812 0.545309 CCTGGAGGTGTTCTGAGGGA 60.545 60.000 0.00 0.00 0.00 4.20
7024 8813 1.557269 CCCTGGAGGTGTTCTGAGGG 61.557 65.000 0.00 0.00 38.44 4.30
7026 8815 0.545309 TCCCCTGGAGGTGTTCTGAG 60.545 60.000 0.00 0.00 0.00 3.35
7027 8816 0.545309 CTCCCCTGGAGGTGTTCTGA 60.545 60.000 2.04 0.00 45.43 3.27
7029 8818 4.569214 CTCCCCTGGAGGTGTTCT 57.431 61.111 2.04 0.00 45.43 3.01
7048 8865 0.109873 GCAAGCTGCTGCAACTACAG 60.110 55.000 18.42 1.35 42.17 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.