Multiple sequence alignment - TraesCS6B01G162400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G162400 chr6B 100.000 4187 0 0 1 4187 169027235 169031421 0.000000e+00 7733.0
1 TraesCS6B01G162400 chr6B 93.647 787 49 1 3401 4187 677384481 677385266 0.000000e+00 1175.0
2 TraesCS6B01G162400 chr6D 93.530 3431 164 31 1 3398 88675558 88678963 0.000000e+00 5053.0
3 TraesCS6B01G162400 chr6A 95.631 2312 82 9 986 3284 106478165 106480470 0.000000e+00 3692.0
4 TraesCS6B01G162400 chr6A 87.731 595 43 10 204 772 106476167 106476757 0.000000e+00 667.0
5 TraesCS6B01G162400 chr7B 90.748 789 70 3 3400 4187 331006839 331006053 0.000000e+00 1050.0
6 TraesCS6B01G162400 chr7B 90.542 793 69 6 3399 4187 655040410 655039620 0.000000e+00 1044.0
7 TraesCS6B01G162400 chrUn 90.327 796 69 4 3399 4187 9449607 9448813 0.000000e+00 1037.0
8 TraesCS6B01G162400 chr2B 89.698 796 76 6 3395 4186 260623671 260624464 0.000000e+00 1011.0
9 TraesCS6B01G162400 chr3B 89.773 792 76 4 3399 4187 661725724 661724935 0.000000e+00 1009.0
10 TraesCS6B01G162400 chr3B 88.917 803 79 5 3393 4187 564662155 564661355 0.000000e+00 981.0
11 TraesCS6B01G162400 chr3B 89.114 790 82 4 3399 4187 725454944 725454158 0.000000e+00 979.0
12 TraesCS6B01G162400 chr1B 89.340 788 81 3 3399 4186 515443482 515442698 0.000000e+00 987.0
13 TraesCS6B01G162400 chr5B 87.324 71 8 1 489 559 609929005 609928936 3.470000e-11 80.5
14 TraesCS6B01G162400 chr4D 84.722 72 11 0 493 564 366977318 366977389 5.810000e-09 73.1
15 TraesCS6B01G162400 chr4D 92.857 42 3 0 518 559 44447373 44447332 1.260000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G162400 chr6B 169027235 169031421 4186 False 7733.0 7733 100.000 1 4187 1 chr6B.!!$F1 4186
1 TraesCS6B01G162400 chr6B 677384481 677385266 785 False 1175.0 1175 93.647 3401 4187 1 chr6B.!!$F2 786
2 TraesCS6B01G162400 chr6D 88675558 88678963 3405 False 5053.0 5053 93.530 1 3398 1 chr6D.!!$F1 3397
3 TraesCS6B01G162400 chr6A 106476167 106480470 4303 False 2179.5 3692 91.681 204 3284 2 chr6A.!!$F1 3080
4 TraesCS6B01G162400 chr7B 331006053 331006839 786 True 1050.0 1050 90.748 3400 4187 1 chr7B.!!$R1 787
5 TraesCS6B01G162400 chr7B 655039620 655040410 790 True 1044.0 1044 90.542 3399 4187 1 chr7B.!!$R2 788
6 TraesCS6B01G162400 chrUn 9448813 9449607 794 True 1037.0 1037 90.327 3399 4187 1 chrUn.!!$R1 788
7 TraesCS6B01G162400 chr2B 260623671 260624464 793 False 1011.0 1011 89.698 3395 4186 1 chr2B.!!$F1 791
8 TraesCS6B01G162400 chr3B 661724935 661725724 789 True 1009.0 1009 89.773 3399 4187 1 chr3B.!!$R2 788
9 TraesCS6B01G162400 chr3B 564661355 564662155 800 True 981.0 981 88.917 3393 4187 1 chr3B.!!$R1 794
10 TraesCS6B01G162400 chr3B 725454158 725454944 786 True 979.0 979 89.114 3399 4187 1 chr3B.!!$R3 788
11 TraesCS6B01G162400 chr1B 515442698 515443482 784 True 987.0 987 89.340 3399 4186 1 chr1B.!!$R1 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 666 1.330655 ATGGGTGCCGTCTGGTCTAG 61.331 60.0 0.0 0.0 37.67 2.43 F
2025 3300 0.532573 TGCTCAACTCCATCCTCGTC 59.467 55.0 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 3885 0.317770 GCTCGGAGATGCTTCTCTCG 60.318 60.0 24.2 23.43 46.46 4.04 R
3373 4674 0.106719 AATGGGTGGGGCATTCTACG 60.107 55.0 0.0 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.803235 TGTATACACTCGAAGGCAATTATAGAT 58.197 33.333 0.08 0.00 0.00 1.98
34 35 8.366671 ACACTCGAAGGCAATTATAGATTTAC 57.633 34.615 0.00 0.00 0.00 2.01
52 53 8.974292 AGATTTACCAGATATTAGCCTCCTAA 57.026 34.615 0.00 0.00 37.90 2.69
92 93 6.705302 TGTTCTCTGAAATAAGCTCACTGAT 58.295 36.000 0.00 0.00 0.00 2.90
100 101 7.739825 TGAAATAAGCTCACTGATATAAGGCT 58.260 34.615 0.00 0.00 0.00 4.58
102 103 7.976135 AATAAGCTCACTGATATAAGGCTTG 57.024 36.000 10.69 0.00 38.67 4.01
113 114 6.997655 TGATATAAGGCTTGAGACGATTCAT 58.002 36.000 10.69 0.00 0.00 2.57
129 130 4.084589 CGATTCATCAAACACTTCGACACA 60.085 41.667 0.00 0.00 0.00 3.72
145 146 6.613755 TCGACACAATCTTATAGATCACGA 57.386 37.500 0.00 0.00 32.89 4.35
162 163 2.287915 CACGATACACAAGCTAATGGGC 59.712 50.000 0.00 0.00 0.00 5.36
163 164 1.873591 CGATACACAAGCTAATGGGCC 59.126 52.381 0.00 0.00 0.00 5.80
165 166 3.244078 CGATACACAAGCTAATGGGCCTA 60.244 47.826 4.53 0.00 0.00 3.93
169 170 3.763897 ACACAAGCTAATGGGCCTAAAAG 59.236 43.478 4.53 0.00 0.00 2.27
170 171 4.016444 CACAAGCTAATGGGCCTAAAAGA 58.984 43.478 4.53 0.00 0.00 2.52
196 197 6.855763 TCAATTCTTTGGATATTGCACCTT 57.144 33.333 0.00 0.00 33.44 3.50
228 229 6.609237 ACACAATAGTAGTATCGTTCGCTA 57.391 37.500 0.00 0.00 0.00 4.26
247 248 3.433598 GCTACCATCAGGCATAAGACCAA 60.434 47.826 0.00 0.00 39.06 3.67
251 252 6.702449 ACCATCAGGCATAAGACCAATATA 57.298 37.500 0.00 0.00 39.06 0.86
282 283 7.581011 ACTTCAAAACAACAACAGTGATTTC 57.419 32.000 0.00 0.00 0.00 2.17
284 285 7.872483 ACTTCAAAACAACAACAGTGATTTCTT 59.128 29.630 0.00 0.00 0.00 2.52
364 380 5.246656 TCCCATTTGAAACAAAGCATCTGAT 59.753 36.000 0.00 0.00 0.00 2.90
365 381 5.350365 CCCATTTGAAACAAAGCATCTGATG 59.650 40.000 13.26 13.26 0.00 3.07
429 447 3.475566 TCTCTGTCACCCTTGTTTCAG 57.524 47.619 0.00 0.00 0.00 3.02
431 453 3.199946 TCTCTGTCACCCTTGTTTCAGTT 59.800 43.478 0.00 0.00 0.00 3.16
444 466 3.311322 TGTTTCAGTTAACTCAAGCACCG 59.689 43.478 4.69 0.00 0.00 4.94
447 469 1.798813 CAGTTAACTCAAGCACCGTCC 59.201 52.381 4.77 0.00 0.00 4.79
560 583 8.040132 TGAATCCAATCAAAACTGAAACAAACT 58.960 29.630 0.00 0.00 0.00 2.66
584 607 4.065789 GGGCTTGCTATCCTTGTATGTAC 58.934 47.826 0.00 0.00 0.00 2.90
593 624 3.517602 TCCTTGTATGTACGTGTCATGC 58.482 45.455 15.10 14.24 0.00 4.06
597 628 4.705337 TGTATGTACGTGTCATGCACTA 57.295 40.909 17.02 6.89 45.57 2.74
600 631 4.921470 ATGTACGTGTCATGCACTAAAC 57.079 40.909 15.20 11.36 45.57 2.01
633 666 1.330655 ATGGGTGCCGTCTGGTCTAG 61.331 60.000 0.00 0.00 37.67 2.43
742 783 3.676216 CTGTGCCAGCATGCAAGA 58.324 55.556 21.98 0.00 44.11 3.02
782 2014 4.803098 ACCTGGTAAGACTACATGTGAC 57.197 45.455 9.11 0.00 0.00 3.67
896 2133 1.691196 TCTGACAAGCAAAACCCAGG 58.309 50.000 0.00 0.00 0.00 4.45
957 2203 1.553248 AGCAGGCCAATACTTCGTGTA 59.447 47.619 5.01 0.00 35.37 2.90
967 2213 5.294306 CCAATACTTCGTGTACATGCTGATT 59.706 40.000 10.38 4.73 33.45 2.57
1579 2854 1.942776 TCATCCAGGAGAAGACAGCA 58.057 50.000 0.00 0.00 0.00 4.41
2025 3300 0.532573 TGCTCAACTCCATCCTCGTC 59.467 55.000 0.00 0.00 0.00 4.20
2122 3397 3.755628 TGGACTACGGCGTGCTCC 61.756 66.667 24.86 24.08 0.00 4.70
2136 3411 2.656069 GCTCCGGGACTACCTGCAA 61.656 63.158 0.00 0.00 40.99 4.08
2511 3786 2.643272 GTGACGACGCTGAGGACA 59.357 61.111 0.00 0.00 0.00 4.02
2775 4053 2.809601 CTGTCACGGTACTGCGCC 60.810 66.667 4.18 0.00 0.00 6.53
3051 4329 0.457851 CGGAGCTCATCGTCTTCCTT 59.542 55.000 17.19 0.00 0.00 3.36
3057 4335 1.741401 CATCGTCTTCCTTGCGCCA 60.741 57.895 4.18 0.00 0.00 5.69
3069 4347 3.554692 GCGCCATCGGAGAACGTG 61.555 66.667 0.00 0.00 43.58 4.49
3168 4453 2.430382 TTTGCCGTCCCGAGAGTGAC 62.430 60.000 0.00 0.00 0.00 3.67
3183 4469 3.813688 GACGTCGAACACTCGCGC 61.814 66.667 0.00 0.00 45.04 6.86
3196 4482 0.039708 CTCGCGCTAGCTGATCATGA 60.040 55.000 13.93 0.00 42.32 3.07
3206 4492 5.238868 GCTAGCTGATCATGACATCATTTGT 59.761 40.000 7.70 0.00 42.79 2.83
3207 4493 6.426025 GCTAGCTGATCATGACATCATTTGTA 59.574 38.462 7.70 0.00 39.18 2.41
3208 4494 6.615264 AGCTGATCATGACATCATTTGTAC 57.385 37.500 0.00 0.00 39.18 2.90
3241 4531 9.570488 TTTTTATTTGTTTGGGCGTGTATATAC 57.430 29.630 5.89 5.89 0.00 1.47
3293 4583 5.929697 ATATTGTATGCAACTCATCACGG 57.070 39.130 0.00 0.00 37.44 4.94
3313 4603 3.675228 CGGACACACACCCACTTATACTC 60.675 52.174 0.00 0.00 0.00 2.59
3317 4607 2.901839 ACACACCCACTTATACTCCGTT 59.098 45.455 0.00 0.00 0.00 4.44
3329 4619 0.616111 ACTCCGTTCATCCTGAGGCT 60.616 55.000 0.00 0.00 0.00 4.58
3352 4642 3.038417 GCGACTGCGACACAAGCT 61.038 61.111 0.00 0.00 40.82 3.74
3353 4643 3.004734 GCGACTGCGACACAAGCTC 62.005 63.158 0.00 0.00 40.82 4.09
3354 4644 2.375766 CGACTGCGACACAAGCTCC 61.376 63.158 0.00 0.00 40.82 4.70
3376 4677 1.210931 GGTATATCAGCGCCGCGTA 59.789 57.895 15.34 0.00 0.00 4.42
3390 4691 2.994699 CGTAGAATGCCCCACCCA 59.005 61.111 0.00 0.00 0.00 4.51
3495 4796 4.053983 GCACGAATCTTAGCATGATCTGA 58.946 43.478 0.00 0.00 0.00 3.27
3620 4930 2.031163 GGTGGAACTGCTCTGCGT 59.969 61.111 0.00 0.00 36.74 5.24
3912 5226 0.899717 GTGCCTGCATTTTCTCCCCA 60.900 55.000 0.00 0.00 0.00 4.96
3929 5243 2.094390 CCCCAACTCTTCGTGTTCGATA 60.094 50.000 0.00 0.00 45.65 2.92
4015 5329 0.033366 GTCCTGCGGTTGCCATTTTT 59.967 50.000 0.00 0.00 41.78 1.94
4037 5351 0.107831 TCGCACTGGGCAGTTTAGTT 59.892 50.000 1.50 0.00 45.17 2.24
4109 5423 0.251341 ACTGGTTGTGCCTTGGGATC 60.251 55.000 0.00 0.00 38.35 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.173542 TCTATAATTGCCTTCGAGTGTATACA 57.826 34.615 0.08 0.08 0.00 2.29
30 31 8.792830 TCTTTAGGAGGCTAATATCTGGTAAA 57.207 34.615 0.00 0.00 0.00 2.01
34 35 9.660180 GTTTATCTTTAGGAGGCTAATATCTGG 57.340 37.037 0.00 0.00 0.00 3.86
47 48 9.793259 AGAACAAGAATGTGTTTATCTTTAGGA 57.207 29.630 0.00 0.00 41.78 2.94
52 53 8.908786 TCAGAGAACAAGAATGTGTTTATCTT 57.091 30.769 0.00 0.00 41.78 2.40
61 62 7.663081 TGAGCTTATTTCAGAGAACAAGAATGT 59.337 33.333 0.00 0.00 43.14 2.71
64 65 7.172190 CAGTGAGCTTATTTCAGAGAACAAGAA 59.828 37.037 0.00 0.00 0.00 2.52
92 93 6.405278 TGATGAATCGTCTCAAGCCTTATA 57.595 37.500 3.95 0.00 0.00 0.98
100 101 5.107491 CGAAGTGTTTGATGAATCGTCTCAA 60.107 40.000 3.95 0.00 0.00 3.02
102 103 4.621460 TCGAAGTGTTTGATGAATCGTCTC 59.379 41.667 3.95 0.00 0.00 3.36
113 114 8.085909 TCTATAAGATTGTGTCGAAGTGTTTGA 58.914 33.333 0.00 0.00 0.00 2.69
129 130 8.580720 AGCTTGTGTATCGTGATCTATAAGATT 58.419 33.333 0.00 0.00 34.53 2.40
145 146 4.788925 TTAGGCCCATTAGCTTGTGTAT 57.211 40.909 0.00 0.00 0.00 2.29
169 170 7.983484 AGGTGCAATATCCAAAGAATTGAAATC 59.017 33.333 0.00 0.00 38.94 2.17
170 171 7.854337 AGGTGCAATATCCAAAGAATTGAAAT 58.146 30.769 0.00 0.00 38.94 2.17
189 190 7.172342 ACTATTGTGTTTATTCCTAAGGTGCA 58.828 34.615 0.00 0.00 0.00 4.57
225 226 2.104792 TGGTCTTATGCCTGATGGTAGC 59.895 50.000 0.00 0.00 35.27 3.58
228 229 3.959495 ATTGGTCTTATGCCTGATGGT 57.041 42.857 0.00 0.00 35.27 3.55
284 285 8.780249 CGAGAGGAACTGGTTAATTCTTAAAAA 58.220 33.333 0.00 0.00 41.55 1.94
385 403 4.796110 ATGAACATGGCCTTATGTAGGT 57.204 40.909 9.01 0.00 46.61 3.08
392 410 6.126796 TGACAGAGAATATGAACATGGCCTTA 60.127 38.462 3.32 0.00 0.00 2.69
399 417 5.965033 AGGGTGACAGAGAATATGAACAT 57.035 39.130 0.00 0.00 0.00 2.71
400 418 5.013079 ACAAGGGTGACAGAGAATATGAACA 59.987 40.000 0.00 0.00 0.00 3.18
429 447 1.154197 GGGACGGTGCTTGAGTTAAC 58.846 55.000 0.00 0.00 0.00 2.01
431 453 1.675219 GGGGACGGTGCTTGAGTTA 59.325 57.895 0.00 0.00 0.00 2.24
444 466 0.468648 CCCACTATTTCTCCGGGGAC 59.531 60.000 1.51 0.00 37.80 4.46
447 469 2.330216 AGATCCCACTATTTCTCCGGG 58.670 52.381 0.00 0.00 38.34 5.73
528 551 9.781633 TTTCAGTTTTGATTGGATTCAAATCAT 57.218 25.926 15.60 0.46 43.20 2.45
560 583 1.590591 TACAAGGATAGCAAGCCCCA 58.409 50.000 0.00 0.00 0.00 4.96
593 624 2.033236 TGCGCTCGAACTTTGTTTAGTG 60.033 45.455 9.73 0.00 0.00 2.74
597 628 1.334960 CCATGCGCTCGAACTTTGTTT 60.335 47.619 9.73 0.00 0.00 2.83
600 631 1.135315 CCCATGCGCTCGAACTTTG 59.865 57.895 9.73 0.00 0.00 2.77
628 661 5.063880 TCTTTTGTGAGGGAAAAGCTAGAC 58.936 41.667 0.00 0.00 39.34 2.59
633 666 6.925610 AAATTTCTTTTGTGAGGGAAAAGC 57.074 33.333 0.00 0.00 39.34 3.51
694 735 4.872664 TGACACGTTCACACACATGTATA 58.127 39.130 0.00 0.00 36.72 1.47
696 737 3.166489 TGACACGTTCACACACATGTA 57.834 42.857 0.00 0.00 36.72 2.29
742 783 3.670377 GCACCGCCGCTCCTTTTT 61.670 61.111 0.00 0.00 0.00 1.94
782 2014 1.672356 CTGCTGGAAAGTCACCCCG 60.672 63.158 0.00 0.00 0.00 5.73
957 2203 6.144563 CGAACTTCGTATGATAATCAGCATGT 59.855 38.462 2.84 0.00 34.09 3.21
967 2213 6.051646 TCGATGTTCGAACTTCGTATGATA 57.948 37.500 40.96 28.83 46.90 2.15
1272 2547 1.524482 GATGGTGAGGGAGGAGCAC 59.476 63.158 0.00 0.00 0.00 4.40
1274 2549 1.758514 TCGATGGTGAGGGAGGAGC 60.759 63.158 0.00 0.00 0.00 4.70
1762 3037 0.392461 TCCTTGGTGTGCGGATAAGC 60.392 55.000 0.00 0.00 37.71 3.09
1764 3039 1.837439 AGATCCTTGGTGTGCGGATAA 59.163 47.619 0.00 0.00 37.66 1.75
1905 3180 1.144936 CACCCCGAATGCTCTCTCC 59.855 63.158 0.00 0.00 0.00 3.71
2025 3300 4.742201 CTGACCCACGTGGCGAGG 62.742 72.222 29.75 17.65 37.83 4.63
2114 3389 4.509737 GGTAGTCCCGGAGCACGC 62.510 72.222 0.73 0.00 42.52 5.34
2115 3390 2.754658 AGGTAGTCCCGGAGCACG 60.755 66.667 0.73 0.00 43.80 5.34
2116 3391 2.893398 CAGGTAGTCCCGGAGCAC 59.107 66.667 0.73 0.00 38.74 4.40
2117 3392 3.075005 GCAGGTAGTCCCGGAGCA 61.075 66.667 0.73 0.00 38.74 4.26
2122 3397 2.813908 GCGTTGCAGGTAGTCCCG 60.814 66.667 0.00 0.00 38.74 5.14
2125 3400 2.380410 CGTGGCGTTGCAGGTAGTC 61.380 63.158 0.00 0.00 0.00 2.59
2190 3465 0.319040 CGATGGCGACGATGAAGGAT 60.319 55.000 0.00 0.00 40.82 3.24
2407 3682 2.802667 CGCATCCGCAGTAGCACAC 61.803 63.158 0.00 0.00 42.27 3.82
2511 3786 2.030562 CCGAGTGCTCCGTGGTTT 59.969 61.111 0.00 0.00 0.00 3.27
2564 3839 3.869065 CAAGCCCAGGTAAACTTATCGA 58.131 45.455 0.00 0.00 0.00 3.59
2610 3885 0.317770 GCTCGGAGATGCTTCTCTCG 60.318 60.000 24.20 23.43 46.46 4.04
2775 4053 1.517257 CTTCAGCGCCACGAGGTAG 60.517 63.158 2.29 0.00 37.19 3.18
2931 4209 1.746470 TCCTCAGCGTCTCGTTCATA 58.254 50.000 0.00 0.00 0.00 2.15
3051 4329 4.063967 ACGTTCTCCGATGGCGCA 62.064 61.111 10.83 0.00 40.70 6.09
3057 4335 2.181021 GCCGTCACGTTCTCCGAT 59.819 61.111 0.00 0.00 40.70 4.18
3102 4380 1.872952 CAAAGCACGGTGATGAACTCA 59.127 47.619 13.29 0.00 0.00 3.41
3183 4469 6.862711 ACAAATGATGTCATGATCAGCTAG 57.137 37.500 0.00 0.00 37.96 3.42
3206 4492 9.413048 CGCCCAAACAAATAAAAAGAAATAGTA 57.587 29.630 0.00 0.00 0.00 1.82
3207 4493 7.929245 ACGCCCAAACAAATAAAAAGAAATAGT 59.071 29.630 0.00 0.00 0.00 2.12
3208 4494 8.220434 CACGCCCAAACAAATAAAAAGAAATAG 58.780 33.333 0.00 0.00 0.00 1.73
3293 4583 3.675228 CGGAGTATAAGTGGGTGTGTGTC 60.675 52.174 0.00 0.00 0.00 3.67
3317 4607 1.406065 GCAGGCTAGCCTCAGGATGA 61.406 60.000 33.94 0.00 46.28 2.92
3329 4619 3.370231 TGTCGCAGTCGCAGGCTA 61.370 61.111 0.00 0.00 46.86 3.93
3351 4641 1.154016 CGCTGATATACCGCGGGAG 60.154 63.158 31.76 10.07 45.64 4.30
3352 4642 2.959372 CGCTGATATACCGCGGGA 59.041 61.111 31.76 24.91 45.64 5.14
3372 4673 2.516225 GGGTGGGGCATTCTACGC 60.516 66.667 0.00 0.00 0.00 4.42
3373 4674 0.106719 AATGGGTGGGGCATTCTACG 60.107 55.000 0.00 0.00 0.00 3.51
3376 4677 2.043307 AAAAATGGGTGGGGCATTCT 57.957 45.000 0.00 0.00 0.00 2.40
3484 4785 4.940046 ACAGAAAATCGTTCAGATCATGCT 59.060 37.500 0.00 0.00 38.98 3.79
3495 4796 1.305201 ACGTGGCACAGAAAATCGTT 58.695 45.000 19.09 0.00 41.80 3.85
3847 5161 3.536956 TTACCTTCAATCTGTAGGCGG 57.463 47.619 0.00 0.00 38.34 6.13
3929 5243 4.130857 TCTCTATGAATCTCGAGCGAAGT 58.869 43.478 7.81 0.00 0.00 3.01
4015 5329 2.089887 TAAACTGCCCAGTGCGACGA 62.090 55.000 0.00 0.00 45.60 4.20
4109 5423 0.234884 GACAGAAAAACGACAGCCCG 59.765 55.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.