Multiple sequence alignment - TraesCS6B01G161900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G161900 chr6B 100.000 2992 0 0 1 2992 166138383 166141374 0.000000e+00 5526.0
1 TraesCS6B01G161900 chr6D 90.400 2052 113 42 22 2009 87501846 87503877 0.000000e+00 2621.0
2 TraesCS6B01G161900 chr6D 81.222 671 93 18 2325 2992 87565094 87565734 7.400000e-141 510.0
3 TraesCS6B01G161900 chr6D 92.308 91 6 1 2138 2227 87503919 87504009 8.710000e-26 128.0
4 TraesCS6B01G161900 chr6A 93.805 1372 51 10 671 2009 105637635 105639005 0.000000e+00 2032.0
5 TraesCS6B01G161900 chr6A 91.277 642 43 9 22 656 105636514 105637149 0.000000e+00 863.0
6 TraesCS6B01G161900 chr6A 81.278 673 88 22 2325 2991 105742937 105743577 7.400000e-141 510.0
7 TraesCS6B01G161900 chr3A 92.424 66 5 0 2032 2097 505231474 505231409 8.830000e-16 95.3
8 TraesCS6B01G161900 chr5A 89.706 68 7 0 2032 2099 439567865 439567932 1.480000e-13 87.9
9 TraesCS6B01G161900 chr5A 87.324 71 8 1 2032 2102 240318555 240318486 2.470000e-11 80.5
10 TraesCS6B01G161900 chr5A 93.333 45 3 0 2243 2287 689156640 689156684 1.920000e-07 67.6
11 TraesCS6B01G161900 chr3B 86.765 68 9 0 2032 2099 808117141 808117074 3.200000e-10 76.8
12 TraesCS6B01G161900 chrUn 92.683 41 3 0 2032 2072 61730873 61730913 3.220000e-05 60.2
13 TraesCS6B01G161900 chr1B 92.500 40 3 0 2044 2083 37756200 37756161 1.160000e-04 58.4
14 TraesCS6B01G161900 chr1A 100.000 28 0 0 2247 2274 32302980 32302953 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G161900 chr6B 166138383 166141374 2991 False 5526.0 5526 100.000 1 2992 1 chr6B.!!$F1 2991
1 TraesCS6B01G161900 chr6D 87501846 87504009 2163 False 1374.5 2621 91.354 22 2227 2 chr6D.!!$F2 2205
2 TraesCS6B01G161900 chr6D 87565094 87565734 640 False 510.0 510 81.222 2325 2992 1 chr6D.!!$F1 667
3 TraesCS6B01G161900 chr6A 105636514 105639005 2491 False 1447.5 2032 92.541 22 2009 2 chr6A.!!$F2 1987
4 TraesCS6B01G161900 chr6A 105742937 105743577 640 False 510.0 510 81.278 2325 2991 1 chr6A.!!$F1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 1552 0.382873 TGCATGAATTCCTGATGCGC 59.617 50.0 18.87 0.0 44.52 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 3000 0.173708 GGACATGAGGACACGAGGAC 59.826 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.188159 TGGAACTCCACACAAGTACAC 57.812 47.619 0.00 0.00 42.01 2.90
107 108 5.634859 CACAAAATTACACTGAAATGGCTCC 59.365 40.000 0.00 0.00 0.00 4.70
142 143 6.267471 TGTTGGAAATTTCACTAGAATGGCTT 59.733 34.615 19.49 0.00 32.89 4.35
160 163 7.860649 ATGGCTTCATAATCCCAAAATGTAT 57.139 32.000 0.00 0.00 0.00 2.29
196 199 5.050159 GCAGTAAACTGGCTTTGAAATTTGG 60.050 40.000 11.86 0.00 43.94 3.28
203 206 6.591001 ACTGGCTTTGAAATTTGGTTTACAT 58.409 32.000 0.00 0.00 0.00 2.29
241 244 6.096001 CCTTGATATTTCTAAAGTGCAGGCTT 59.904 38.462 0.00 0.00 0.00 4.35
264 332 5.138125 TGAAATTGGACTGAAATGGCTTC 57.862 39.130 0.00 0.00 34.31 3.86
274 343 6.312180 GGACTGAAATGGCTTCAAAAATGATC 59.688 38.462 0.00 0.00 43.54 2.92
276 345 7.447594 ACTGAAATGGCTTCAAAAATGATCTT 58.552 30.769 0.00 0.00 43.54 2.40
283 352 5.406477 GGCTTCAAAAATGATCTTTGGTGTC 59.594 40.000 6.19 0.00 35.03 3.67
284 353 6.218746 GCTTCAAAAATGATCTTTGGTGTCT 58.781 36.000 6.19 0.00 35.03 3.41
296 365 7.665145 TGATCTTTGGTGTCTGAAATTGTATCA 59.335 33.333 0.00 0.00 0.00 2.15
345 414 9.683069 ACTGCACTGAAATAAACTAAAATTCTG 57.317 29.630 0.00 0.00 0.00 3.02
346 415 8.519492 TGCACTGAAATAAACTAAAATTCTGC 57.481 30.769 0.00 0.00 0.00 4.26
368 438 7.436080 TCTGCAGAATTGAAGTTGAATTTGTTC 59.564 33.333 15.67 0.00 31.28 3.18
393 463 6.875753 TGAAATTGCGCTGAAATTTTAACTG 58.124 32.000 15.49 0.00 37.35 3.16
397 467 6.893958 TTGCGCTGAAATTTTAACTGAAAA 57.106 29.167 9.73 0.00 41.24 2.29
506 576 7.803724 ACAACAACGAAAACTATCTAACCATC 58.196 34.615 0.00 0.00 0.00 3.51
570 643 6.635755 ACCCACCAAAAATTAATTACGATGG 58.364 36.000 14.85 14.85 0.00 3.51
608 681 2.039084 CACAGCTAGTGGAAGGGAAACT 59.961 50.000 8.03 0.00 44.69 2.66
633 706 1.065491 ACAAACATATCAGGCGAGGCA 60.065 47.619 0.00 0.00 0.00 4.75
634 707 1.600957 CAAACATATCAGGCGAGGCAG 59.399 52.381 0.00 0.00 0.00 4.85
635 708 0.833287 AACATATCAGGCGAGGCAGT 59.167 50.000 0.00 0.00 0.00 4.40
955 1531 4.717629 TTCTCTCACGTGCCCGCG 62.718 66.667 11.67 0.00 37.70 6.46
976 1552 0.382873 TGCATGAATTCCTGATGCGC 59.617 50.000 18.87 0.00 44.52 6.09
1278 1880 2.304761 TCACAAGGTACCTTCCATCCAC 59.695 50.000 24.73 0.00 33.42 4.02
1667 2281 2.354656 GCCGAGCGTCGCATGATA 60.355 61.111 21.09 0.00 38.82 2.15
1676 2290 0.041839 GTCGCATGATAAAGCTGCCG 60.042 55.000 0.00 0.00 32.24 5.69
1831 2445 2.258591 GCTGACCGTCGAGCAGAA 59.741 61.111 15.51 0.00 35.15 3.02
1833 2447 1.876664 CTGACCGTCGAGCAGAAGA 59.123 57.895 8.14 0.00 0.00 2.87
1878 2492 2.997897 ACTCCCTCGGTGACCTGC 60.998 66.667 0.00 0.00 0.00 4.85
1913 2527 2.736995 TTCCGCGCGTGGAAGAAG 60.737 61.111 41.86 16.74 43.01 2.85
1973 2587 1.374758 CAGGGACAGAAGGCGTCAC 60.375 63.158 2.69 0.00 37.04 3.67
1975 2589 1.070786 GGGACAGAAGGCGTCACAA 59.929 57.895 2.69 0.00 36.76 3.33
1994 2608 0.886563 ACAGCTGCTGGATTTGAAGC 59.113 50.000 31.00 0.00 39.96 3.86
1998 2612 1.135170 GCTGCTGGATTTGAAGCCTTC 60.135 52.381 0.00 0.00 38.71 3.46
1999 2613 1.131883 CTGCTGGATTTGAAGCCTTCG 59.868 52.381 0.00 0.00 38.71 3.79
2001 2615 1.812571 GCTGGATTTGAAGCCTTCGAA 59.187 47.619 9.51 9.51 37.45 3.71
2003 2617 3.119352 GCTGGATTTGAAGCCTTCGAATT 60.119 43.478 18.69 5.49 42.43 2.17
2004 2618 4.096382 GCTGGATTTGAAGCCTTCGAATTA 59.904 41.667 18.69 11.45 42.43 1.40
2005 2619 5.393027 GCTGGATTTGAAGCCTTCGAATTAA 60.393 40.000 18.69 10.66 42.43 1.40
2006 2620 6.681368 GCTGGATTTGAAGCCTTCGAATTAAT 60.681 38.462 18.69 0.22 42.43 1.40
2007 2621 7.169158 TGGATTTGAAGCCTTCGAATTAATT 57.831 32.000 18.69 0.00 42.43 1.40
2008 2622 8.287439 TGGATTTGAAGCCTTCGAATTAATTA 57.713 30.769 18.69 4.41 42.43 1.40
2009 2623 8.188139 TGGATTTGAAGCCTTCGAATTAATTAC 58.812 33.333 18.69 7.06 42.43 1.89
2010 2624 8.406297 GGATTTGAAGCCTTCGAATTAATTACT 58.594 33.333 18.69 0.00 42.43 2.24
2011 2625 9.439537 GATTTGAAGCCTTCGAATTAATTACTC 57.560 33.333 18.69 3.65 42.43 2.59
2012 2626 6.920569 TGAAGCCTTCGAATTAATTACTCC 57.079 37.500 0.00 0.00 0.00 3.85
2013 2627 5.820947 TGAAGCCTTCGAATTAATTACTCCC 59.179 40.000 0.00 0.00 0.00 4.30
2014 2628 5.632034 AGCCTTCGAATTAATTACTCCCT 57.368 39.130 0.00 0.00 0.00 4.20
2015 2629 5.612351 AGCCTTCGAATTAATTACTCCCTC 58.388 41.667 0.00 0.00 0.00 4.30
2016 2630 5.367060 AGCCTTCGAATTAATTACTCCCTCT 59.633 40.000 0.00 0.00 0.00 3.69
2017 2631 5.467063 GCCTTCGAATTAATTACTCCCTCTG 59.533 44.000 0.00 0.00 0.00 3.35
2018 2632 6.583562 CCTTCGAATTAATTACTCCCTCTGT 58.416 40.000 0.00 0.00 0.00 3.41
2019 2633 6.702282 CCTTCGAATTAATTACTCCCTCTGTC 59.298 42.308 0.00 0.00 0.00 3.51
2020 2634 7.418025 CCTTCGAATTAATTACTCCCTCTGTCT 60.418 40.741 0.00 0.00 0.00 3.41
2021 2635 7.040473 TCGAATTAATTACTCCCTCTGTCTC 57.960 40.000 0.00 0.00 0.00 3.36
2022 2636 5.915758 CGAATTAATTACTCCCTCTGTCTCG 59.084 44.000 0.00 0.00 0.00 4.04
2023 2637 6.459848 CGAATTAATTACTCCCTCTGTCTCGT 60.460 42.308 0.00 0.00 0.00 4.18
2024 2638 7.255035 CGAATTAATTACTCCCTCTGTCTCGTA 60.255 40.741 0.00 0.00 0.00 3.43
2025 2639 7.893124 ATTAATTACTCCCTCTGTCTCGTAA 57.107 36.000 0.00 0.00 0.00 3.18
2026 2640 7.893124 TTAATTACTCCCTCTGTCTCGTAAT 57.107 36.000 0.00 0.00 31.15 1.89
2027 2641 5.776173 ATTACTCCCTCTGTCTCGTAATG 57.224 43.478 0.00 0.00 0.00 1.90
2028 2642 3.088789 ACTCCCTCTGTCTCGTAATGT 57.911 47.619 0.00 0.00 0.00 2.71
2029 2643 4.232188 ACTCCCTCTGTCTCGTAATGTA 57.768 45.455 0.00 0.00 0.00 2.29
2030 2644 4.597004 ACTCCCTCTGTCTCGTAATGTAA 58.403 43.478 0.00 0.00 0.00 2.41
2031 2645 5.014858 ACTCCCTCTGTCTCGTAATGTAAA 58.985 41.667 0.00 0.00 0.00 2.01
2032 2646 5.479375 ACTCCCTCTGTCTCGTAATGTAAAA 59.521 40.000 0.00 0.00 0.00 1.52
2033 2647 6.154706 ACTCCCTCTGTCTCGTAATGTAAAAT 59.845 38.462 0.00 0.00 0.00 1.82
2034 2648 6.338146 TCCCTCTGTCTCGTAATGTAAAATG 58.662 40.000 0.00 0.00 0.00 2.32
2035 2649 6.070995 TCCCTCTGTCTCGTAATGTAAAATGT 60.071 38.462 0.00 0.00 0.00 2.71
2036 2650 7.123098 TCCCTCTGTCTCGTAATGTAAAATGTA 59.877 37.037 0.00 0.00 0.00 2.29
2037 2651 7.762615 CCCTCTGTCTCGTAATGTAAAATGTAA 59.237 37.037 0.00 0.00 0.00 2.41
2038 2652 8.808529 CCTCTGTCTCGTAATGTAAAATGTAAG 58.191 37.037 0.00 0.00 0.00 2.34
2039 2653 9.569167 CTCTGTCTCGTAATGTAAAATGTAAGA 57.431 33.333 0.00 0.00 0.00 2.10
2040 2654 9.350357 TCTGTCTCGTAATGTAAAATGTAAGAC 57.650 33.333 0.00 0.00 0.00 3.01
2041 2655 8.165212 TGTCTCGTAATGTAAAATGTAAGACG 57.835 34.615 0.00 0.00 33.77 4.18
2042 2656 7.109257 GTCTCGTAATGTAAAATGTAAGACGC 58.891 38.462 0.00 0.00 0.00 5.19
2043 2657 7.008992 GTCTCGTAATGTAAAATGTAAGACGCT 59.991 37.037 0.00 0.00 0.00 5.07
2044 2658 7.543172 TCTCGTAATGTAAAATGTAAGACGCTT 59.457 33.333 0.00 0.00 0.00 4.68
2045 2659 8.020861 TCGTAATGTAAAATGTAAGACGCTTT 57.979 30.769 0.00 0.00 0.00 3.51
2046 2660 8.497554 TCGTAATGTAAAATGTAAGACGCTTTT 58.502 29.630 0.00 0.00 0.00 2.27
2047 2661 9.109533 CGTAATGTAAAATGTAAGACGCTTTTT 57.890 29.630 0.00 0.00 0.00 1.94
2051 2665 9.953697 ATGTAAAATGTAAGACGCTTTTTAACA 57.046 25.926 0.00 0.00 31.74 2.41
2052 2666 9.224058 TGTAAAATGTAAGACGCTTTTTAACAC 57.776 29.630 0.00 0.00 31.74 3.32
2053 2667 9.442033 GTAAAATGTAAGACGCTTTTTAACACT 57.558 29.630 0.00 0.00 31.74 3.55
2057 2671 9.607285 AATGTAAGACGCTTTTTAACACTAATG 57.393 29.630 0.00 0.00 0.00 1.90
2058 2672 8.145316 TGTAAGACGCTTTTTAACACTAATGT 57.855 30.769 0.00 0.00 42.46 2.71
2059 2673 9.258826 TGTAAGACGCTTTTTAACACTAATGTA 57.741 29.630 0.00 0.00 38.45 2.29
2060 2674 9.737025 GTAAGACGCTTTTTAACACTAATGTAG 57.263 33.333 0.00 0.00 38.45 2.74
2061 2675 7.958053 AGACGCTTTTTAACACTAATGTAGT 57.042 32.000 0.00 0.00 38.45 2.73
2091 2705 7.447374 AAAACATCTGACATTATGAAACGGA 57.553 32.000 0.00 1.49 0.00 4.69
2092 2706 6.668541 AACATCTGACATTATGAAACGGAG 57.331 37.500 0.00 0.00 0.00 4.63
2093 2707 5.118990 ACATCTGACATTATGAAACGGAGG 58.881 41.667 0.00 5.23 0.00 4.30
2096 2710 5.419542 TCTGACATTATGAAACGGAGGAAG 58.580 41.667 0.00 0.00 0.00 3.46
2106 2720 6.145338 TGAAACGGAGGAAGTAGATATGAC 57.855 41.667 0.00 0.00 0.00 3.06
2116 2730 8.480643 AGGAAGTAGATATGACGTTCAAAAAG 57.519 34.615 0.00 0.00 0.00 2.27
2117 2731 8.311836 AGGAAGTAGATATGACGTTCAAAAAGA 58.688 33.333 0.00 0.00 0.00 2.52
2118 2732 8.932791 GGAAGTAGATATGACGTTCAAAAAGAA 58.067 33.333 0.00 0.00 0.00 2.52
2136 2750 6.592207 AAAGAATTAGGTTAGGTGGGCTAT 57.408 37.500 0.00 0.00 0.00 2.97
2170 2795 6.150976 TGTGAGGCAAATGTTAGAAGTATTGG 59.849 38.462 0.00 0.00 0.00 3.16
2171 2796 6.374333 GTGAGGCAAATGTTAGAAGTATTGGA 59.626 38.462 0.00 0.00 0.00 3.53
2227 2853 5.009110 TCAAATCGTGGCACAAATACTTTCA 59.991 36.000 19.09 0.00 44.16 2.69
2228 2854 5.643379 AATCGTGGCACAAATACTTTCAT 57.357 34.783 19.09 0.00 44.16 2.57
2229 2855 6.751514 AATCGTGGCACAAATACTTTCATA 57.248 33.333 19.09 0.00 44.16 2.15
2230 2856 5.539582 TCGTGGCACAAATACTTTCATAC 57.460 39.130 19.09 0.00 44.16 2.39
2231 2857 5.242434 TCGTGGCACAAATACTTTCATACT 58.758 37.500 19.09 0.00 44.16 2.12
2232 2858 5.703592 TCGTGGCACAAATACTTTCATACTT 59.296 36.000 19.09 0.00 44.16 2.24
2233 2859 6.021596 CGTGGCACAAATACTTTCATACTTC 58.978 40.000 19.09 0.00 44.16 3.01
2234 2860 6.348132 CGTGGCACAAATACTTTCATACTTCA 60.348 38.462 19.09 0.00 44.16 3.02
2235 2861 7.367285 GTGGCACAAATACTTTCATACTTCAA 58.633 34.615 13.86 0.00 44.16 2.69
2236 2862 8.028938 GTGGCACAAATACTTTCATACTTCAAT 58.971 33.333 13.86 0.00 44.16 2.57
2237 2863 9.237187 TGGCACAAATACTTTCATACTTCAATA 57.763 29.630 0.00 0.00 31.92 1.90
2238 2864 9.503427 GGCACAAATACTTTCATACTTCAATAC 57.497 33.333 0.00 0.00 0.00 1.89
2239 2865 9.210426 GCACAAATACTTTCATACTTCAATACG 57.790 33.333 0.00 0.00 0.00 3.06
2240 2866 9.702726 CACAAATACTTTCATACTTCAATACGG 57.297 33.333 0.00 0.00 0.00 4.02
2241 2867 9.661563 ACAAATACTTTCATACTTCAATACGGA 57.338 29.630 0.00 0.00 0.00 4.69
2242 2868 9.916397 CAAATACTTTCATACTTCAATACGGAC 57.084 33.333 0.00 0.00 0.00 4.79
2243 2869 9.661563 AAATACTTTCATACTTCAATACGGACA 57.338 29.630 0.00 0.00 0.00 4.02
2244 2870 9.832445 AATACTTTCATACTTCAATACGGACAT 57.168 29.630 0.00 0.00 0.00 3.06
2247 2873 9.832445 ACTTTCATACTTCAATACGGACATATT 57.168 29.630 0.00 0.00 0.00 1.28
2249 2875 9.825109 TTTCATACTTCAATACGGACATATTGA 57.175 29.630 4.48 4.48 45.53 2.57
2263 2889 9.396022 ACGGACATATTGAAATCTCTAAAATGT 57.604 29.630 0.00 0.00 0.00 2.71
2293 2919 7.961326 ATTTAAAAATAGAGGGAGCATGTGT 57.039 32.000 0.00 0.00 0.00 3.72
2294 2920 6.757897 TTAAAAATAGAGGGAGCATGTGTG 57.242 37.500 0.00 0.00 0.00 3.82
2295 2921 4.307032 AAAATAGAGGGAGCATGTGTGT 57.693 40.909 0.00 0.00 0.00 3.72
2296 2922 5.435686 AAAATAGAGGGAGCATGTGTGTA 57.564 39.130 0.00 0.00 0.00 2.90
2297 2923 4.679373 AATAGAGGGAGCATGTGTGTAG 57.321 45.455 0.00 0.00 0.00 2.74
2298 2924 1.944177 AGAGGGAGCATGTGTGTAGT 58.056 50.000 0.00 0.00 0.00 2.73
2299 2925 2.260822 AGAGGGAGCATGTGTGTAGTT 58.739 47.619 0.00 0.00 0.00 2.24
2300 2926 2.639839 AGAGGGAGCATGTGTGTAGTTT 59.360 45.455 0.00 0.00 0.00 2.66
2301 2927 3.073062 AGAGGGAGCATGTGTGTAGTTTT 59.927 43.478 0.00 0.00 0.00 2.43
2302 2928 3.149196 AGGGAGCATGTGTGTAGTTTTG 58.851 45.455 0.00 0.00 0.00 2.44
2303 2929 2.884639 GGGAGCATGTGTGTAGTTTTGT 59.115 45.455 0.00 0.00 0.00 2.83
2304 2930 3.058224 GGGAGCATGTGTGTAGTTTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
2305 2931 3.815401 GGAGCATGTGTGTAGTTTTGTCT 59.185 43.478 0.00 0.00 0.00 3.41
2306 2932 4.275936 GGAGCATGTGTGTAGTTTTGTCTT 59.724 41.667 0.00 0.00 0.00 3.01
2307 2933 5.221048 GGAGCATGTGTGTAGTTTTGTCTTT 60.221 40.000 0.00 0.00 0.00 2.52
2308 2934 6.017440 GGAGCATGTGTGTAGTTTTGTCTTTA 60.017 38.462 0.00 0.00 0.00 1.85
2309 2935 7.308589 GGAGCATGTGTGTAGTTTTGTCTTTAT 60.309 37.037 0.00 0.00 0.00 1.40
2310 2936 7.584987 AGCATGTGTGTAGTTTTGTCTTTATC 58.415 34.615 0.00 0.00 0.00 1.75
2311 2937 7.228507 AGCATGTGTGTAGTTTTGTCTTTATCA 59.771 33.333 0.00 0.00 0.00 2.15
2312 2938 7.860373 GCATGTGTGTAGTTTTGTCTTTATCAA 59.140 33.333 0.00 0.00 0.00 2.57
2313 2939 9.385902 CATGTGTGTAGTTTTGTCTTTATCAAG 57.614 33.333 0.00 0.00 0.00 3.02
2314 2940 7.925993 TGTGTGTAGTTTTGTCTTTATCAAGG 58.074 34.615 0.00 0.00 0.00 3.61
2315 2941 7.771361 TGTGTGTAGTTTTGTCTTTATCAAGGA 59.229 33.333 0.00 0.00 0.00 3.36
2316 2942 8.068380 GTGTGTAGTTTTGTCTTTATCAAGGAC 58.932 37.037 0.00 0.00 0.00 3.85
2317 2943 7.771361 TGTGTAGTTTTGTCTTTATCAAGGACA 59.229 33.333 0.26 0.26 0.00 4.02
2318 2944 8.784043 GTGTAGTTTTGTCTTTATCAAGGACAT 58.216 33.333 4.91 0.00 0.00 3.06
2319 2945 8.783093 TGTAGTTTTGTCTTTATCAAGGACATG 58.217 33.333 4.91 0.00 0.00 3.21
2320 2946 8.999431 GTAGTTTTGTCTTTATCAAGGACATGA 58.001 33.333 0.00 0.00 0.00 3.07
2321 2947 8.463930 AGTTTTGTCTTTATCAAGGACATGAA 57.536 30.769 0.00 2.02 32.06 2.57
2322 2948 8.571336 AGTTTTGTCTTTATCAAGGACATGAAG 58.429 33.333 0.00 0.00 32.06 3.02
2323 2949 7.452880 TTTGTCTTTATCAAGGACATGAAGG 57.547 36.000 0.00 0.00 32.06 3.46
2338 2964 4.286032 ACATGAAGGTTAGGTTAGAGCACA 59.714 41.667 0.00 0.00 0.00 4.57
2344 2970 6.368779 AGGTTAGGTTAGAGCACAAATGTA 57.631 37.500 0.00 0.00 0.00 2.29
2353 2979 3.571401 AGAGCACAAATGTAGCTGCTTTT 59.429 39.130 7.79 9.43 39.02 2.27
2354 2980 3.645884 AGCACAAATGTAGCTGCTTTTG 58.354 40.909 29.16 29.16 37.20 2.44
2355 2981 3.068590 AGCACAAATGTAGCTGCTTTTGT 59.931 39.130 30.16 30.16 43.09 2.83
2357 2983 4.084900 GCACAAATGTAGCTGCTTTTGTTC 60.085 41.667 31.99 26.87 41.57 3.18
2374 3000 4.258702 TGTTCTTCTTCCTCCTTTCTCG 57.741 45.455 0.00 0.00 0.00 4.04
2376 3002 4.239304 GTTCTTCTTCCTCCTTTCTCGTC 58.761 47.826 0.00 0.00 0.00 4.20
2388 3014 0.250597 TTCTCGTCCTCGTGTCCTCA 60.251 55.000 0.00 0.00 38.33 3.86
2390 3016 0.099613 CTCGTCCTCGTGTCCTCATG 59.900 60.000 0.00 0.00 38.33 3.07
2396 3022 0.608130 CTCGTGTCCTCATGTCCCAA 59.392 55.000 0.00 0.00 32.85 4.12
2402 3028 2.374839 TGTCCTCATGTCCCAACATCAA 59.625 45.455 0.00 0.00 44.41 2.57
2405 3031 2.615447 CCTCATGTCCCAACATCAATCG 59.385 50.000 0.00 0.00 44.41 3.34
2406 3032 3.273434 CTCATGTCCCAACATCAATCGT 58.727 45.455 0.00 0.00 44.41 3.73
2407 3033 3.684908 TCATGTCCCAACATCAATCGTT 58.315 40.909 0.00 0.00 44.41 3.85
2409 3035 2.073056 TGTCCCAACATCAATCGTTCG 58.927 47.619 0.00 0.00 0.00 3.95
2411 3037 2.093783 GTCCCAACATCAATCGTTCGAC 59.906 50.000 0.00 0.00 0.00 4.20
2414 3040 2.159707 CCAACATCAATCGTTCGACCAC 60.160 50.000 0.00 0.00 0.00 4.16
2415 3041 2.448926 ACATCAATCGTTCGACCACA 57.551 45.000 0.00 0.00 0.00 4.17
2416 3042 2.761559 ACATCAATCGTTCGACCACAA 58.238 42.857 0.00 0.00 0.00 3.33
2418 3044 2.519377 TCAATCGTTCGACCACAACT 57.481 45.000 0.00 0.00 0.00 3.16
2419 3045 3.646611 TCAATCGTTCGACCACAACTA 57.353 42.857 0.00 0.00 0.00 2.24
2420 3046 4.182693 TCAATCGTTCGACCACAACTAT 57.817 40.909 0.00 0.00 0.00 2.12
2421 3047 4.171005 TCAATCGTTCGACCACAACTATC 58.829 43.478 0.00 0.00 0.00 2.08
2424 3050 2.163010 TCGTTCGACCACAACTATCTCC 59.837 50.000 0.00 0.00 0.00 3.71
2425 3051 2.527100 GTTCGACCACAACTATCTCCG 58.473 52.381 0.00 0.00 0.00 4.63
2426 3052 1.830279 TCGACCACAACTATCTCCGT 58.170 50.000 0.00 0.00 0.00 4.69
2427 3053 1.471287 TCGACCACAACTATCTCCGTG 59.529 52.381 0.00 0.00 0.00 4.94
2428 3054 1.201647 CGACCACAACTATCTCCGTGT 59.798 52.381 0.00 0.00 0.00 4.49
2429 3055 2.731341 CGACCACAACTATCTCCGTGTC 60.731 54.545 0.00 0.00 0.00 3.67
2430 3056 2.492484 GACCACAACTATCTCCGTGTCT 59.508 50.000 0.00 0.00 0.00 3.41
2431 3057 3.693085 GACCACAACTATCTCCGTGTCTA 59.307 47.826 0.00 0.00 0.00 2.59
2432 3058 3.442977 ACCACAACTATCTCCGTGTCTAC 59.557 47.826 0.00 0.00 0.00 2.59
2433 3059 3.695060 CCACAACTATCTCCGTGTCTACT 59.305 47.826 0.00 0.00 0.00 2.57
2434 3060 4.880120 CCACAACTATCTCCGTGTCTACTA 59.120 45.833 0.00 0.00 0.00 1.82
2435 3061 5.531659 CCACAACTATCTCCGTGTCTACTAT 59.468 44.000 0.00 0.00 0.00 2.12
2436 3062 6.431278 CACAACTATCTCCGTGTCTACTATG 58.569 44.000 0.00 0.00 0.00 2.23
2437 3063 5.531659 ACAACTATCTCCGTGTCTACTATGG 59.468 44.000 0.00 0.00 0.00 2.74
2438 3064 5.307544 ACTATCTCCGTGTCTACTATGGT 57.692 43.478 0.00 0.00 0.00 3.55
2439 3065 5.307204 ACTATCTCCGTGTCTACTATGGTC 58.693 45.833 0.00 0.00 0.00 4.02
2440 3066 2.928334 TCTCCGTGTCTACTATGGTCC 58.072 52.381 0.00 0.00 0.00 4.46
2441 3067 1.955080 CTCCGTGTCTACTATGGTCCC 59.045 57.143 0.00 0.00 0.00 4.46
2442 3068 1.285667 TCCGTGTCTACTATGGTCCCA 59.714 52.381 0.00 0.00 0.00 4.37
2449 3075 2.963101 TCTACTATGGTCCCACCGATTG 59.037 50.000 0.00 0.00 42.58 2.67
2457 3083 1.485066 GTCCCACCGATTGTCTATGGT 59.515 52.381 0.00 0.00 34.29 3.55
2459 3085 1.538204 CCCACCGATTGTCTATGGTCG 60.538 57.143 0.00 0.00 30.72 4.79
2469 3095 6.640907 CGATTGTCTATGGTCGTCATCAATAA 59.359 38.462 0.00 0.00 37.30 1.40
2470 3096 7.169140 CGATTGTCTATGGTCGTCATCAATAAA 59.831 37.037 0.00 0.00 37.30 1.40
2471 3097 7.770801 TTGTCTATGGTCGTCATCAATAAAG 57.229 36.000 0.00 0.00 37.30 1.85
2472 3098 7.107639 TGTCTATGGTCGTCATCAATAAAGA 57.892 36.000 0.00 0.00 37.30 2.52
2473 3099 6.978659 TGTCTATGGTCGTCATCAATAAAGAC 59.021 38.462 0.00 0.00 35.83 3.01
2474 3100 7.147897 TGTCTATGGTCGTCATCAATAAAGACT 60.148 37.037 14.45 0.00 36.07 3.24
2476 3102 4.755411 TGGTCGTCATCAATAAAGACTCC 58.245 43.478 0.00 0.00 0.00 3.85
2477 3103 4.221924 TGGTCGTCATCAATAAAGACTCCA 59.778 41.667 0.00 0.00 34.31 3.86
2479 3105 5.411781 GTCGTCATCAATAAAGACTCCACT 58.588 41.667 0.00 0.00 0.00 4.00
2480 3106 5.517054 GTCGTCATCAATAAAGACTCCACTC 59.483 44.000 0.00 0.00 0.00 3.51
2481 3107 5.419155 TCGTCATCAATAAAGACTCCACTCT 59.581 40.000 0.00 0.00 0.00 3.24
2482 3108 5.746245 CGTCATCAATAAAGACTCCACTCTC 59.254 44.000 0.00 0.00 0.00 3.20
2483 3109 6.625960 CGTCATCAATAAAGACTCCACTCTCA 60.626 42.308 0.00 0.00 0.00 3.27
2484 3110 6.533367 GTCATCAATAAAGACTCCACTCTCAC 59.467 42.308 0.00 0.00 0.00 3.51
2488 3114 3.971245 AAAGACTCCACTCTCACCATC 57.029 47.619 0.00 0.00 0.00 3.51
2491 3117 2.028130 GACTCCACTCTCACCATCGAT 58.972 52.381 0.00 0.00 0.00 3.59
2521 3147 4.384056 AGTTCATCGATGCTAATCCCTTG 58.616 43.478 20.81 0.00 0.00 3.61
2547 3173 2.123425 CCGCCCTAGCCCACTCTA 60.123 66.667 0.00 0.00 34.57 2.43
2553 3179 1.409802 CCCTAGCCCACTCTACTTCGA 60.410 57.143 0.00 0.00 0.00 3.71
2559 3185 1.616187 CCCACTCTACTTCGACCTCCA 60.616 57.143 0.00 0.00 0.00 3.86
2564 3190 3.190874 CTCTACTTCGACCTCCAAATGC 58.809 50.000 0.00 0.00 0.00 3.56
2567 3193 2.296692 CTTCGACCTCCAAATGCGCG 62.297 60.000 0.00 0.00 0.00 6.86
2612 3239 9.088987 AGGCTTCATCCAAAAGTTTAGAATAAA 57.911 29.630 0.00 0.00 0.00 1.40
2626 3253 8.803799 AGTTTAGAATAAAGTTTGTTGTTTGCG 58.196 29.630 1.94 0.00 0.00 4.85
2633 3260 8.865590 ATAAAGTTTGTTGTTTGCGTTTATCT 57.134 26.923 0.00 0.00 0.00 1.98
2636 3263 5.905181 AGTTTGTTGTTTGCGTTTATCTACG 59.095 36.000 0.00 0.00 44.09 3.51
2639 3266 6.709145 TGTTGTTTGCGTTTATCTACGTAT 57.291 33.333 0.00 0.00 43.22 3.06
2640 3267 6.527089 TGTTGTTTGCGTTTATCTACGTATG 58.473 36.000 0.00 0.00 43.22 2.39
2718 3345 2.351726 GCAACCTAATCACTGCTAACCG 59.648 50.000 0.00 0.00 0.00 4.44
2733 3360 3.673052 GCTAACCGCATGAGCAAAATCAA 60.673 43.478 0.00 0.00 42.27 2.57
2736 3363 3.929094 ACCGCATGAGCAAAATCAAAAT 58.071 36.364 0.00 0.00 42.27 1.82
2741 3368 5.624292 GCATGAGCAAAATCAAAATCCAAC 58.376 37.500 0.00 0.00 41.58 3.77
2742 3369 5.410439 GCATGAGCAAAATCAAAATCCAACT 59.590 36.000 0.00 0.00 41.58 3.16
2747 3374 4.024977 GCAAAATCAAAATCCAACTTGCGT 60.025 37.500 0.00 0.00 0.00 5.24
2756 3383 0.716108 CCAACTTGCGTCTAAGCTCG 59.284 55.000 0.00 0.00 38.13 5.03
2773 3400 2.479837 CTCGCCGCTTTATTACCATCA 58.520 47.619 0.00 0.00 0.00 3.07
2792 3419 4.115270 GGTGGGACTCCGAGAAGT 57.885 61.111 1.33 0.00 35.24 3.01
2810 3437 0.896226 GTACACCACCTCCACTCTCC 59.104 60.000 0.00 0.00 0.00 3.71
2814 3441 1.536418 CCACCTCCACTCTCCCACA 60.536 63.158 0.00 0.00 0.00 4.17
2818 3445 2.203938 TCCACTCTCCCACACCCC 60.204 66.667 0.00 0.00 0.00 4.95
2820 3447 1.080354 CCACTCTCCCACACCCCTA 59.920 63.158 0.00 0.00 0.00 3.53
2827 3454 2.590611 TCTCCCACACCCCTATAACTCT 59.409 50.000 0.00 0.00 0.00 3.24
2829 3456 4.140994 TCTCCCACACCCCTATAACTCTAG 60.141 50.000 0.00 0.00 0.00 2.43
2847 3474 2.054232 AGGAGCTCCTGAATTGCATG 57.946 50.000 34.74 0.00 46.55 4.06
2872 3500 1.663173 TCGAGACATGCCACGACAA 59.337 52.632 0.00 0.00 0.00 3.18
2875 3503 1.061131 CGAGACATGCCACGACAATTC 59.939 52.381 0.00 0.00 0.00 2.17
2878 3506 1.745087 GACATGCCACGACAATTCCAT 59.255 47.619 0.00 0.00 0.00 3.41
2879 3507 1.473677 ACATGCCACGACAATTCCATG 59.526 47.619 0.00 0.00 36.90 3.66
2891 3519 5.046910 ACAATTCCATGCTAGTGTTTTCG 57.953 39.130 0.00 0.00 0.00 3.46
2899 3527 1.197036 GCTAGTGTTTTCGTTGCTCCC 59.803 52.381 0.00 0.00 0.00 4.30
2900 3528 1.459592 CTAGTGTTTTCGTTGCTCCCG 59.540 52.381 0.00 0.00 0.00 5.14
2938 3566 4.202620 TGGAGGTTGTTGATCCATGGTTAA 60.203 41.667 12.58 2.82 38.19 2.01
2943 3571 5.925969 GGTTGTTGATCCATGGTTAAAACTG 59.074 40.000 12.58 0.00 0.00 3.16
2947 3575 5.132897 TGATCCATGGTTAAAACTGTTGC 57.867 39.130 12.58 0.00 0.00 4.17
2949 3577 3.300388 TCCATGGTTAAAACTGTTGCCA 58.700 40.909 12.58 1.58 0.00 4.92
2950 3578 3.706594 TCCATGGTTAAAACTGTTGCCAA 59.293 39.130 12.58 0.00 0.00 4.52
2961 3589 3.641648 ACTGTTGCCAATTGTTGAATCG 58.358 40.909 4.43 0.00 0.00 3.34
2974 3602 6.928979 TTGTTGAATCGTCACTTCCTTTTA 57.071 33.333 0.00 0.00 31.90 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.502130 TGTGTACTTGTGTGGAGTTCCA 59.498 45.455 0.00 0.00 45.30 3.53
7 8 3.188159 TGTGTACTTGTGTGGAGTTCC 57.812 47.619 0.00 0.00 0.00 3.62
8 9 5.554822 TTTTGTGTACTTGTGTGGAGTTC 57.445 39.130 0.00 0.00 0.00 3.01
9 10 5.968528 TTTTTGTGTACTTGTGTGGAGTT 57.031 34.783 0.00 0.00 0.00 3.01
10 11 5.163561 CCATTTTTGTGTACTTGTGTGGAGT 60.164 40.000 0.00 0.00 0.00 3.85
11 12 5.163561 ACCATTTTTGTGTACTTGTGTGGAG 60.164 40.000 0.00 0.00 0.00 3.86
12 13 4.707448 ACCATTTTTGTGTACTTGTGTGGA 59.293 37.500 0.00 0.00 0.00 4.02
13 14 5.004922 ACCATTTTTGTGTACTTGTGTGG 57.995 39.130 0.00 0.00 0.00 4.17
14 15 5.645624 TGACCATTTTTGTGTACTTGTGTG 58.354 37.500 0.00 0.00 0.00 3.82
15 16 5.906113 TGACCATTTTTGTGTACTTGTGT 57.094 34.783 0.00 0.00 0.00 3.72
16 17 6.198778 CACATGACCATTTTTGTGTACTTGTG 59.801 38.462 0.00 0.00 35.79 3.33
17 18 6.272318 CACATGACCATTTTTGTGTACTTGT 58.728 36.000 0.00 0.00 35.79 3.16
18 19 5.691305 CCACATGACCATTTTTGTGTACTTG 59.309 40.000 0.00 0.00 38.19 3.16
19 20 5.596361 TCCACATGACCATTTTTGTGTACTT 59.404 36.000 0.00 0.00 38.19 2.24
20 21 5.136828 TCCACATGACCATTTTTGTGTACT 58.863 37.500 0.00 0.00 38.19 2.73
26 27 7.675962 ATGAAATTCCACATGACCATTTTTG 57.324 32.000 0.00 0.00 0.00 2.44
63 64 6.343716 TGTGCCACAATTTAGAATGTTCAT 57.656 33.333 0.00 0.00 0.00 2.57
107 108 7.138736 AGTGAAATTTCCAACACTGTATTTCG 58.861 34.615 15.48 0.00 41.16 3.46
149 152 6.705381 TGCTTTCTCAAACAATACATTTTGGG 59.295 34.615 0.00 0.00 34.93 4.12
160 163 5.678616 GCCAGTTTACTGCTTTCTCAAACAA 60.679 40.000 4.34 0.00 42.47 2.83
170 173 5.535753 ATTTCAAAGCCAGTTTACTGCTT 57.464 34.783 4.34 8.56 42.47 3.91
171 174 5.535753 AATTTCAAAGCCAGTTTACTGCT 57.464 34.783 4.34 3.22 42.47 4.24
196 199 6.538742 TCAAGGAGCAGTATTAGCATGTAAAC 59.461 38.462 0.00 0.00 0.00 2.01
203 206 7.739825 AGAAATATCAAGGAGCAGTATTAGCA 58.260 34.615 0.00 0.00 0.00 3.49
241 244 5.070180 TGAAGCCATTTCAGTCCAATTTCAA 59.930 36.000 0.00 0.00 40.82 2.69
264 332 8.597662 ATTTCAGACACCAAAGATCATTTTTG 57.402 30.769 0.00 0.00 35.75 2.44
274 343 7.439157 TCTGATACAATTTCAGACACCAAAG 57.561 36.000 4.53 0.00 43.49 2.77
276 345 7.815840 TTTCTGATACAATTTCAGACACCAA 57.184 32.000 7.66 0.00 46.92 3.67
296 365 9.492973 CAGTTTCCATCCAATGTTAAAATTTCT 57.507 29.630 0.00 0.00 0.00 2.52
299 368 7.173047 GTGCAGTTTCCATCCAATGTTAAAATT 59.827 33.333 0.00 0.00 0.00 1.82
300 369 6.650390 GTGCAGTTTCCATCCAATGTTAAAAT 59.350 34.615 0.00 0.00 0.00 1.82
305 374 3.006110 CAGTGCAGTTTCCATCCAATGTT 59.994 43.478 0.00 0.00 0.00 2.71
307 376 2.821378 TCAGTGCAGTTTCCATCCAATG 59.179 45.455 0.00 0.00 0.00 2.82
314 383 7.575414 TTAGTTTATTTCAGTGCAGTTTCCA 57.425 32.000 0.00 0.00 0.00 3.53
315 384 8.865590 TTTTAGTTTATTTCAGTGCAGTTTCC 57.134 30.769 0.00 0.00 0.00 3.13
344 413 7.223193 CAGAACAAATTCAACTTCAATTCTGCA 59.777 33.333 0.00 0.00 37.29 4.41
345 414 7.436080 TCAGAACAAATTCAACTTCAATTCTGC 59.564 33.333 0.00 0.00 40.07 4.26
346 415 8.861033 TCAGAACAAATTCAACTTCAATTCTG 57.139 30.769 0.00 0.00 41.08 3.02
368 438 7.005380 CAGTTAAAATTTCAGCGCAATTTCAG 58.995 34.615 11.47 0.00 33.56 3.02
570 643 4.397417 AGCTGTGAAATGCATTTCTACTCC 59.603 41.667 38.33 27.87 44.85 3.85
608 681 3.591023 TCGCCTGATATGTTTGTTCGAA 58.409 40.909 0.00 0.00 0.00 3.71
659 737 1.822186 ACCACGCGCCTCACTTTTT 60.822 52.632 5.73 0.00 0.00 1.94
660 738 2.203153 ACCACGCGCCTCACTTTT 60.203 55.556 5.73 0.00 0.00 2.27
661 739 2.972505 CACCACGCGCCTCACTTT 60.973 61.111 5.73 0.00 0.00 2.66
662 740 3.865929 CTCACCACGCGCCTCACTT 62.866 63.158 5.73 0.00 0.00 3.16
663 741 4.363990 CTCACCACGCGCCTCACT 62.364 66.667 5.73 0.00 0.00 3.41
955 1531 2.921069 GCGCATCAGGAATTCATGCATC 60.921 50.000 22.07 13.01 42.65 3.91
976 1552 3.569548 CCGATCGATCTGTCCTTATGTG 58.430 50.000 22.43 3.03 0.00 3.21
1273 1875 3.228453 GCATGATTGGAATGGAGTGGAT 58.772 45.455 0.00 0.00 0.00 3.41
1278 1880 2.076207 TGGGCATGATTGGAATGGAG 57.924 50.000 0.00 0.00 0.00 3.86
1607 2221 1.095807 GTAACTCTTGGGCCATCCGC 61.096 60.000 7.26 0.00 38.76 5.54
1616 2230 2.086869 TCGACGTAGGGTAACTCTTGG 58.913 52.381 0.00 0.00 0.00 3.61
1657 2271 0.041839 CGGCAGCTTTATCATGCGAC 60.042 55.000 0.00 0.00 40.90 5.19
1667 2281 3.249189 TCCTCACCCGGCAGCTTT 61.249 61.111 0.00 0.00 0.00 3.51
1878 2492 1.507141 AACTGCGCCTTGAGTTTCCG 61.507 55.000 4.18 0.00 0.00 4.30
1913 2527 1.823899 CAGCCGGGCCTTGTAATCC 60.824 63.158 17.02 0.00 0.00 3.01
1973 2587 2.925306 GCTTCAAATCCAGCAGCTGTTG 60.925 50.000 22.44 22.44 35.95 3.33
1975 2589 0.886563 GCTTCAAATCCAGCAGCTGT 59.113 50.000 21.26 0.04 35.95 4.40
1994 2608 6.583562 ACAGAGGGAGTAATTAATTCGAAGG 58.416 40.000 3.39 0.00 0.00 3.46
1998 2612 5.915758 CGAGACAGAGGGAGTAATTAATTCG 59.084 44.000 3.39 0.00 0.00 3.34
1999 2613 6.807789 ACGAGACAGAGGGAGTAATTAATTC 58.192 40.000 3.39 0.00 0.00 2.17
2001 2615 7.893124 TTACGAGACAGAGGGAGTAATTAAT 57.107 36.000 0.00 0.00 0.00 1.40
2003 2617 6.832384 ACATTACGAGACAGAGGGAGTAATTA 59.168 38.462 0.00 0.00 33.96 1.40
2004 2618 5.657302 ACATTACGAGACAGAGGGAGTAATT 59.343 40.000 0.00 0.00 33.96 1.40
2005 2619 5.202004 ACATTACGAGACAGAGGGAGTAAT 58.798 41.667 0.00 0.00 35.83 1.89
2006 2620 4.597004 ACATTACGAGACAGAGGGAGTAA 58.403 43.478 0.00 0.00 0.00 2.24
2007 2621 4.232188 ACATTACGAGACAGAGGGAGTA 57.768 45.455 0.00 0.00 0.00 2.59
2008 2622 3.088789 ACATTACGAGACAGAGGGAGT 57.911 47.619 0.00 0.00 0.00 3.85
2009 2623 5.578005 TTTACATTACGAGACAGAGGGAG 57.422 43.478 0.00 0.00 0.00 4.30
2010 2624 5.988310 TTTTACATTACGAGACAGAGGGA 57.012 39.130 0.00 0.00 0.00 4.20
2011 2625 6.106673 ACATTTTACATTACGAGACAGAGGG 58.893 40.000 0.00 0.00 0.00 4.30
2012 2626 8.697846 TTACATTTTACATTACGAGACAGAGG 57.302 34.615 0.00 0.00 0.00 3.69
2013 2627 9.569167 TCTTACATTTTACATTACGAGACAGAG 57.431 33.333 0.00 0.00 0.00 3.35
2014 2628 9.350357 GTCTTACATTTTACATTACGAGACAGA 57.650 33.333 0.00 0.00 32.32 3.41
2015 2629 8.311822 CGTCTTACATTTTACATTACGAGACAG 58.688 37.037 0.00 0.00 32.32 3.51
2016 2630 7.201376 GCGTCTTACATTTTACATTACGAGACA 60.201 37.037 0.00 0.00 32.32 3.41
2017 2631 7.008992 AGCGTCTTACATTTTACATTACGAGAC 59.991 37.037 0.00 0.00 0.00 3.36
2018 2632 7.031372 AGCGTCTTACATTTTACATTACGAGA 58.969 34.615 0.00 0.00 0.00 4.04
2019 2633 7.218145 AGCGTCTTACATTTTACATTACGAG 57.782 36.000 0.00 0.00 0.00 4.18
2020 2634 7.585286 AAGCGTCTTACATTTTACATTACGA 57.415 32.000 0.00 0.00 0.00 3.43
2021 2635 8.649810 AAAAGCGTCTTACATTTTACATTACG 57.350 30.769 0.00 0.00 0.00 3.18
2025 2639 9.953697 TGTTAAAAAGCGTCTTACATTTTACAT 57.046 25.926 0.00 0.00 0.00 2.29
2026 2640 9.224058 GTGTTAAAAAGCGTCTTACATTTTACA 57.776 29.630 0.00 0.00 0.00 2.41
2027 2641 9.442033 AGTGTTAAAAAGCGTCTTACATTTTAC 57.558 29.630 0.00 0.00 0.00 2.01
2031 2645 9.607285 CATTAGTGTTAAAAAGCGTCTTACATT 57.393 29.630 0.00 0.00 0.00 2.71
2032 2646 8.780249 ACATTAGTGTTAAAAAGCGTCTTACAT 58.220 29.630 0.00 0.00 34.01 2.29
2033 2647 8.145316 ACATTAGTGTTAAAAAGCGTCTTACA 57.855 30.769 0.00 0.00 34.01 2.41
2034 2648 9.737025 CTACATTAGTGTTAAAAAGCGTCTTAC 57.263 33.333 0.00 0.00 39.77 2.34
2035 2649 9.480053 ACTACATTAGTGTTAAAAAGCGTCTTA 57.520 29.630 0.00 0.00 39.77 2.10
2036 2650 8.374327 ACTACATTAGTGTTAAAAAGCGTCTT 57.626 30.769 0.00 0.00 39.77 3.01
2037 2651 7.958053 ACTACATTAGTGTTAAAAAGCGTCT 57.042 32.000 0.00 0.00 39.77 4.18
2066 2680 7.881142 TCCGTTTCATAATGTCAGATGTTTTT 58.119 30.769 0.00 0.00 0.00 1.94
2067 2681 7.362056 CCTCCGTTTCATAATGTCAGATGTTTT 60.362 37.037 0.00 0.00 0.00 2.43
2068 2682 6.094048 CCTCCGTTTCATAATGTCAGATGTTT 59.906 38.462 0.00 0.00 0.00 2.83
2069 2683 5.586243 CCTCCGTTTCATAATGTCAGATGTT 59.414 40.000 0.00 0.00 0.00 2.71
2070 2684 5.104941 TCCTCCGTTTCATAATGTCAGATGT 60.105 40.000 0.00 0.00 0.00 3.06
2071 2685 5.359756 TCCTCCGTTTCATAATGTCAGATG 58.640 41.667 0.00 0.00 0.00 2.90
2072 2686 5.614324 TCCTCCGTTTCATAATGTCAGAT 57.386 39.130 0.00 0.00 0.00 2.90
2073 2687 5.046591 ACTTCCTCCGTTTCATAATGTCAGA 60.047 40.000 0.00 0.00 0.00 3.27
2074 2688 5.178797 ACTTCCTCCGTTTCATAATGTCAG 58.821 41.667 0.00 0.00 0.00 3.51
2075 2689 5.160607 ACTTCCTCCGTTTCATAATGTCA 57.839 39.130 0.00 0.00 0.00 3.58
2076 2690 6.570692 TCTACTTCCTCCGTTTCATAATGTC 58.429 40.000 0.00 0.00 0.00 3.06
2077 2691 6.540438 TCTACTTCCTCCGTTTCATAATGT 57.460 37.500 0.00 0.00 0.00 2.71
2078 2692 9.144747 CATATCTACTTCCTCCGTTTCATAATG 57.855 37.037 0.00 0.00 0.00 1.90
2079 2693 9.090103 TCATATCTACTTCCTCCGTTTCATAAT 57.910 33.333 0.00 0.00 0.00 1.28
2080 2694 8.358148 GTCATATCTACTTCCTCCGTTTCATAA 58.642 37.037 0.00 0.00 0.00 1.90
2081 2695 7.308408 CGTCATATCTACTTCCTCCGTTTCATA 60.308 40.741 0.00 0.00 0.00 2.15
2082 2696 6.515200 CGTCATATCTACTTCCTCCGTTTCAT 60.515 42.308 0.00 0.00 0.00 2.57
2083 2697 5.220989 CGTCATATCTACTTCCTCCGTTTCA 60.221 44.000 0.00 0.00 0.00 2.69
2084 2698 5.213675 CGTCATATCTACTTCCTCCGTTTC 58.786 45.833 0.00 0.00 0.00 2.78
2085 2699 4.643784 ACGTCATATCTACTTCCTCCGTTT 59.356 41.667 0.00 0.00 0.00 3.60
2086 2700 4.205587 ACGTCATATCTACTTCCTCCGTT 58.794 43.478 0.00 0.00 0.00 4.44
2087 2701 3.818180 ACGTCATATCTACTTCCTCCGT 58.182 45.455 0.00 0.00 0.00 4.69
2088 2702 4.275196 TGAACGTCATATCTACTTCCTCCG 59.725 45.833 0.00 0.00 0.00 4.63
2089 2703 5.769484 TGAACGTCATATCTACTTCCTCC 57.231 43.478 0.00 0.00 0.00 4.30
2090 2704 8.475331 TTTTTGAACGTCATATCTACTTCCTC 57.525 34.615 0.00 0.00 0.00 3.71
2091 2705 8.311836 TCTTTTTGAACGTCATATCTACTTCCT 58.688 33.333 0.00 0.00 0.00 3.36
2092 2706 8.475331 TCTTTTTGAACGTCATATCTACTTCC 57.525 34.615 0.00 0.00 0.00 3.46
2106 2720 7.081976 CCACCTAACCTAATTCTTTTTGAACG 58.918 38.462 0.00 0.00 37.52 3.95
2116 2730 5.306114 ACATAGCCCACCTAACCTAATTC 57.694 43.478 0.00 0.00 0.00 2.17
2117 2731 6.331837 ACATACATAGCCCACCTAACCTAATT 59.668 38.462 0.00 0.00 0.00 1.40
2118 2732 5.850028 ACATACATAGCCCACCTAACCTAAT 59.150 40.000 0.00 0.00 0.00 1.73
2119 2733 5.221303 ACATACATAGCCCACCTAACCTAA 58.779 41.667 0.00 0.00 0.00 2.69
2120 2734 4.823107 ACATACATAGCCCACCTAACCTA 58.177 43.478 0.00 0.00 0.00 3.08
2121 2735 3.665443 ACATACATAGCCCACCTAACCT 58.335 45.455 0.00 0.00 0.00 3.50
2122 2736 4.134563 CAACATACATAGCCCACCTAACC 58.865 47.826 0.00 0.00 0.00 2.85
2123 2737 4.574828 CACAACATACATAGCCCACCTAAC 59.425 45.833 0.00 0.00 0.00 2.34
2136 2750 3.888323 ACATTTGCCTCACACAACATACA 59.112 39.130 0.00 0.00 0.00 2.29
2194 2820 6.691754 TGTGCCACGATTTGAAACATATAT 57.308 33.333 0.00 0.00 0.00 0.86
2205 2831 5.446143 TGAAAGTATTTGTGCCACGATTT 57.554 34.783 0.00 0.00 39.27 2.17
2237 2863 9.396022 ACATTTTAGAGATTTCAATATGTCCGT 57.604 29.630 0.00 0.00 0.00 4.69
2267 2893 9.646522 ACACATGCTCCCTCTATTTTTAAATAT 57.353 29.630 0.00 0.00 31.03 1.28
2268 2894 8.902806 CACACATGCTCCCTCTATTTTTAAATA 58.097 33.333 0.00 0.00 0.00 1.40
2269 2895 7.397192 ACACACATGCTCCCTCTATTTTTAAAT 59.603 33.333 0.00 0.00 0.00 1.40
2270 2896 6.719370 ACACACATGCTCCCTCTATTTTTAAA 59.281 34.615 0.00 0.00 0.00 1.52
2271 2897 6.245408 ACACACATGCTCCCTCTATTTTTAA 58.755 36.000 0.00 0.00 0.00 1.52
2272 2898 5.815581 ACACACATGCTCCCTCTATTTTTA 58.184 37.500 0.00 0.00 0.00 1.52
2273 2899 4.666512 ACACACATGCTCCCTCTATTTTT 58.333 39.130 0.00 0.00 0.00 1.94
2274 2900 4.307032 ACACACATGCTCCCTCTATTTT 57.693 40.909 0.00 0.00 0.00 1.82
2275 2901 4.471386 ACTACACACATGCTCCCTCTATTT 59.529 41.667 0.00 0.00 0.00 1.40
2276 2902 4.033709 ACTACACACATGCTCCCTCTATT 58.966 43.478 0.00 0.00 0.00 1.73
2277 2903 3.647636 ACTACACACATGCTCCCTCTAT 58.352 45.455 0.00 0.00 0.00 1.98
2278 2904 3.101643 ACTACACACATGCTCCCTCTA 57.898 47.619 0.00 0.00 0.00 2.43
2279 2905 1.944177 ACTACACACATGCTCCCTCT 58.056 50.000 0.00 0.00 0.00 3.69
2280 2906 2.770164 AACTACACACATGCTCCCTC 57.230 50.000 0.00 0.00 0.00 4.30
2281 2907 3.149196 CAAAACTACACACATGCTCCCT 58.851 45.455 0.00 0.00 0.00 4.20
2282 2908 2.884639 ACAAAACTACACACATGCTCCC 59.115 45.455 0.00 0.00 0.00 4.30
2283 2909 3.815401 AGACAAAACTACACACATGCTCC 59.185 43.478 0.00 0.00 0.00 4.70
2284 2910 5.424121 AAGACAAAACTACACACATGCTC 57.576 39.130 0.00 0.00 0.00 4.26
2285 2911 5.835113 AAAGACAAAACTACACACATGCT 57.165 34.783 0.00 0.00 0.00 3.79
2286 2912 7.359595 TGATAAAGACAAAACTACACACATGC 58.640 34.615 0.00 0.00 0.00 4.06
2287 2913 9.385902 CTTGATAAAGACAAAACTACACACATG 57.614 33.333 0.00 0.00 0.00 3.21
2288 2914 8.567948 CCTTGATAAAGACAAAACTACACACAT 58.432 33.333 0.00 0.00 0.00 3.21
2289 2915 7.771361 TCCTTGATAAAGACAAAACTACACACA 59.229 33.333 0.00 0.00 0.00 3.72
2290 2916 8.068380 GTCCTTGATAAAGACAAAACTACACAC 58.932 37.037 0.00 0.00 0.00 3.82
2291 2917 7.771361 TGTCCTTGATAAAGACAAAACTACACA 59.229 33.333 0.00 0.00 37.58 3.72
2292 2918 8.149973 TGTCCTTGATAAAGACAAAACTACAC 57.850 34.615 0.00 0.00 37.58 2.90
2293 2919 8.783093 CATGTCCTTGATAAAGACAAAACTACA 58.217 33.333 0.00 0.00 43.29 2.74
2294 2920 8.999431 TCATGTCCTTGATAAAGACAAAACTAC 58.001 33.333 0.00 0.00 43.29 2.73
2295 2921 9.567776 TTCATGTCCTTGATAAAGACAAAACTA 57.432 29.630 0.00 0.00 43.29 2.24
2296 2922 8.463930 TTCATGTCCTTGATAAAGACAAAACT 57.536 30.769 0.00 0.00 43.29 2.66
2297 2923 7.809806 CCTTCATGTCCTTGATAAAGACAAAAC 59.190 37.037 0.00 0.00 43.29 2.43
2298 2924 7.505585 ACCTTCATGTCCTTGATAAAGACAAAA 59.494 33.333 0.00 0.00 43.29 2.44
2299 2925 7.004086 ACCTTCATGTCCTTGATAAAGACAAA 58.996 34.615 0.00 0.00 43.29 2.83
2300 2926 6.542821 ACCTTCATGTCCTTGATAAAGACAA 58.457 36.000 0.00 0.00 43.29 3.18
2301 2927 6.126863 ACCTTCATGTCCTTGATAAAGACA 57.873 37.500 0.00 0.00 44.11 3.41
2302 2928 7.281100 CCTAACCTTCATGTCCTTGATAAAGAC 59.719 40.741 0.00 0.00 0.00 3.01
2303 2929 7.037586 ACCTAACCTTCATGTCCTTGATAAAGA 60.038 37.037 0.00 0.00 0.00 2.52
2304 2930 7.112779 ACCTAACCTTCATGTCCTTGATAAAG 58.887 38.462 0.00 0.00 0.00 1.85
2305 2931 7.027874 ACCTAACCTTCATGTCCTTGATAAA 57.972 36.000 0.00 0.00 0.00 1.40
2306 2932 6.636454 ACCTAACCTTCATGTCCTTGATAA 57.364 37.500 0.00 0.00 0.00 1.75
2307 2933 6.636454 AACCTAACCTTCATGTCCTTGATA 57.364 37.500 0.00 0.00 0.00 2.15
2308 2934 5.520748 AACCTAACCTTCATGTCCTTGAT 57.479 39.130 0.00 0.00 0.00 2.57
2309 2935 4.993705 AACCTAACCTTCATGTCCTTGA 57.006 40.909 0.00 0.00 0.00 3.02
2310 2936 6.049955 TCTAACCTAACCTTCATGTCCTTG 57.950 41.667 0.00 0.00 0.00 3.61
2311 2937 5.338463 GCTCTAACCTAACCTTCATGTCCTT 60.338 44.000 0.00 0.00 0.00 3.36
2312 2938 4.162509 GCTCTAACCTAACCTTCATGTCCT 59.837 45.833 0.00 0.00 0.00 3.85
2313 2939 4.081087 TGCTCTAACCTAACCTTCATGTCC 60.081 45.833 0.00 0.00 0.00 4.02
2314 2940 4.870991 GTGCTCTAACCTAACCTTCATGTC 59.129 45.833 0.00 0.00 0.00 3.06
2315 2941 4.286032 TGTGCTCTAACCTAACCTTCATGT 59.714 41.667 0.00 0.00 0.00 3.21
2316 2942 4.832248 TGTGCTCTAACCTAACCTTCATG 58.168 43.478 0.00 0.00 0.00 3.07
2317 2943 5.499004 TTGTGCTCTAACCTAACCTTCAT 57.501 39.130 0.00 0.00 0.00 2.57
2318 2944 4.967084 TTGTGCTCTAACCTAACCTTCA 57.033 40.909 0.00 0.00 0.00 3.02
2319 2945 5.705905 ACATTTGTGCTCTAACCTAACCTTC 59.294 40.000 0.00 0.00 0.00 3.46
2320 2946 5.631119 ACATTTGTGCTCTAACCTAACCTT 58.369 37.500 0.00 0.00 0.00 3.50
2321 2947 5.242795 ACATTTGTGCTCTAACCTAACCT 57.757 39.130 0.00 0.00 0.00 3.50
2322 2948 5.064834 GCTACATTTGTGCTCTAACCTAACC 59.935 44.000 0.00 0.00 0.00 2.85
2323 2949 5.875359 AGCTACATTTGTGCTCTAACCTAAC 59.125 40.000 0.00 0.00 30.52 2.34
2338 2964 6.396829 AGAAGAACAAAAGCAGCTACATTT 57.603 33.333 0.00 0.00 0.00 2.32
2344 2970 3.560105 AGGAAGAAGAACAAAAGCAGCT 58.440 40.909 0.00 0.00 0.00 4.24
2353 2979 3.641906 ACGAGAAAGGAGGAAGAAGAACA 59.358 43.478 0.00 0.00 0.00 3.18
2354 2980 4.239304 GACGAGAAAGGAGGAAGAAGAAC 58.761 47.826 0.00 0.00 0.00 3.01
2355 2981 3.258622 GGACGAGAAAGGAGGAAGAAGAA 59.741 47.826 0.00 0.00 0.00 2.52
2357 2983 2.829120 AGGACGAGAAAGGAGGAAGAAG 59.171 50.000 0.00 0.00 0.00 2.85
2374 3000 0.173708 GGACATGAGGACACGAGGAC 59.826 60.000 0.00 0.00 0.00 3.85
2376 3002 1.257750 TGGGACATGAGGACACGAGG 61.258 60.000 0.00 0.00 0.00 4.63
2390 3016 2.093783 GTCGAACGATTGATGTTGGGAC 59.906 50.000 0.00 0.00 0.00 4.46
2396 3022 2.448926 TGTGGTCGAACGATTGATGT 57.551 45.000 0.00 0.00 0.00 3.06
2402 3028 3.181489 GGAGATAGTTGTGGTCGAACGAT 60.181 47.826 0.00 0.00 0.00 3.73
2405 3031 2.094854 ACGGAGATAGTTGTGGTCGAAC 60.095 50.000 0.00 0.00 0.00 3.95
2406 3032 2.094906 CACGGAGATAGTTGTGGTCGAA 60.095 50.000 0.00 0.00 0.00 3.71
2407 3033 1.471287 CACGGAGATAGTTGTGGTCGA 59.529 52.381 0.00 0.00 0.00 4.20
2409 3035 2.492484 AGACACGGAGATAGTTGTGGTC 59.508 50.000 0.00 0.00 36.67 4.02
2411 3037 3.695060 AGTAGACACGGAGATAGTTGTGG 59.305 47.826 0.00 0.00 36.67 4.17
2414 3040 5.531659 ACCATAGTAGACACGGAGATAGTTG 59.468 44.000 0.00 0.00 0.00 3.16
2415 3041 5.692928 ACCATAGTAGACACGGAGATAGTT 58.307 41.667 0.00 0.00 0.00 2.24
2416 3042 5.307204 GACCATAGTAGACACGGAGATAGT 58.693 45.833 0.00 0.00 0.00 2.12
2418 3044 4.506271 GGGACCATAGTAGACACGGAGATA 60.506 50.000 0.00 0.00 0.00 1.98
2419 3045 3.488363 GGACCATAGTAGACACGGAGAT 58.512 50.000 0.00 0.00 0.00 2.75
2420 3046 2.422519 GGGACCATAGTAGACACGGAGA 60.423 54.545 0.00 0.00 0.00 3.71
2421 3047 1.955080 GGGACCATAGTAGACACGGAG 59.045 57.143 0.00 0.00 0.00 4.63
2424 3050 1.407979 GGTGGGACCATAGTAGACACG 59.592 57.143 0.00 0.00 38.42 4.49
2425 3051 1.407979 CGGTGGGACCATAGTAGACAC 59.592 57.143 0.00 0.00 38.47 3.67
2426 3052 1.285667 TCGGTGGGACCATAGTAGACA 59.714 52.381 0.00 0.00 38.47 3.41
2427 3053 2.062971 TCGGTGGGACCATAGTAGAC 57.937 55.000 0.00 0.00 38.47 2.59
2428 3054 2.963101 CAATCGGTGGGACCATAGTAGA 59.037 50.000 0.00 0.00 38.47 2.59
2429 3055 2.698797 ACAATCGGTGGGACCATAGTAG 59.301 50.000 0.00 0.00 38.47 2.57
2430 3056 2.696707 GACAATCGGTGGGACCATAGTA 59.303 50.000 0.00 0.00 38.47 1.82
2431 3057 1.485066 GACAATCGGTGGGACCATAGT 59.515 52.381 0.00 0.00 38.47 2.12
2432 3058 1.762957 AGACAATCGGTGGGACCATAG 59.237 52.381 0.00 0.00 38.47 2.23
2433 3059 1.874129 AGACAATCGGTGGGACCATA 58.126 50.000 0.00 0.00 38.47 2.74
2434 3060 1.874129 TAGACAATCGGTGGGACCAT 58.126 50.000 0.00 0.00 38.47 3.55
2435 3061 1.484653 CATAGACAATCGGTGGGACCA 59.515 52.381 0.00 0.00 38.47 4.02
2436 3062 1.202651 CCATAGACAATCGGTGGGACC 60.203 57.143 0.00 0.00 34.05 4.46
2437 3063 1.485066 ACCATAGACAATCGGTGGGAC 59.515 52.381 7.24 0.00 32.51 4.46
2438 3064 1.760613 GACCATAGACAATCGGTGGGA 59.239 52.381 0.00 0.00 32.51 4.37
2439 3065 1.538204 CGACCATAGACAATCGGTGGG 60.538 57.143 0.00 0.00 32.51 4.61
2440 3066 1.136305 ACGACCATAGACAATCGGTGG 59.864 52.381 0.00 0.00 38.88 4.61
2441 3067 2.159296 TGACGACCATAGACAATCGGTG 60.159 50.000 0.00 0.00 38.88 4.94
2442 3068 2.097036 TGACGACCATAGACAATCGGT 58.903 47.619 0.00 0.00 38.88 4.69
2449 3075 7.203910 AGTCTTTATTGATGACGACCATAGAC 58.796 38.462 0.00 1.60 37.47 2.59
2457 3083 5.419155 AGAGTGGAGTCTTTATTGATGACGA 59.581 40.000 0.00 0.00 37.47 4.20
2459 3085 6.533367 GTGAGAGTGGAGTCTTTATTGATGAC 59.467 42.308 0.00 0.00 33.73 3.06
2469 3095 1.821753 CGATGGTGAGAGTGGAGTCTT 59.178 52.381 0.00 0.00 0.00 3.01
2470 3096 1.004862 TCGATGGTGAGAGTGGAGTCT 59.995 52.381 0.00 0.00 0.00 3.24
2471 3097 1.464734 TCGATGGTGAGAGTGGAGTC 58.535 55.000 0.00 0.00 0.00 3.36
2472 3098 1.753649 CATCGATGGTGAGAGTGGAGT 59.246 52.381 17.96 0.00 0.00 3.85
2473 3099 2.027385 TCATCGATGGTGAGAGTGGAG 58.973 52.381 24.61 0.00 0.00 3.86
2474 3100 1.751351 GTCATCGATGGTGAGAGTGGA 59.249 52.381 24.61 0.00 0.00 4.02
2476 3102 3.077229 GAGTCATCGATGGTGAGAGTG 57.923 52.381 24.61 0.00 0.00 3.51
2528 3154 2.232892 TAGAGTGGGCTAGGGCGGAA 62.233 60.000 0.00 0.00 39.81 4.30
2547 3173 1.298859 GCGCATTTGGAGGTCGAAGT 61.299 55.000 0.30 0.00 0.00 3.01
2559 3185 1.374505 AAATTGCTGGCGCGCATTT 60.375 47.368 34.42 24.78 40.04 2.32
2567 3193 0.459934 TTATGGCGCAAATTGCTGGC 60.460 50.000 21.76 21.76 42.25 4.85
2601 3228 8.588789 ACGCAAACAACAAACTTTATTCTAAAC 58.411 29.630 0.00 0.00 0.00 2.01
2612 3239 5.905181 CGTAGATAAACGCAAACAACAAACT 59.095 36.000 0.00 0.00 35.87 2.66
2617 3244 6.754206 TCATACGTAGATAAACGCAAACAAC 58.246 36.000 0.08 0.00 46.71 3.32
2620 3247 8.498192 TCTATCATACGTAGATAAACGCAAAC 57.502 34.615 0.08 0.00 46.71 2.93
2621 3248 9.177304 CTTCTATCATACGTAGATAAACGCAAA 57.823 33.333 0.08 0.00 46.71 3.68
2624 3251 8.838961 GTTCTTCTATCATACGTAGATAAACGC 58.161 37.037 0.08 0.00 46.71 4.84
2633 3260 8.953368 TGACTAGTGTTCTTCTATCATACGTA 57.047 34.615 0.00 0.00 0.00 3.57
2671 3298 8.204160 CCCTTGTAGACAATGTACAATATCTCA 58.796 37.037 0.00 0.00 39.17 3.27
2672 3299 7.171678 GCCCTTGTAGACAATGTACAATATCTC 59.828 40.741 0.00 0.00 39.17 2.75
2676 3303 6.056090 TGCCCTTGTAGACAATGTACAATA 57.944 37.500 0.00 0.00 39.17 1.90
2718 3345 5.410439 AGTTGGATTTTGATTTTGCTCATGC 59.590 36.000 0.00 0.00 40.20 4.06
2756 3383 3.626028 CCTTGATGGTAATAAAGCGGC 57.374 47.619 0.00 0.00 0.00 6.53
2773 3400 0.178929 ACTTCTCGGAGTCCCACCTT 60.179 55.000 2.80 0.00 0.00 3.50
2782 3409 1.473278 GAGGTGGTGTACTTCTCGGAG 59.527 57.143 0.00 0.00 32.96 4.63
2792 3419 0.252103 GGGAGAGTGGAGGTGGTGTA 60.252 60.000 0.00 0.00 0.00 2.90
2810 3437 4.153411 CTCCTAGAGTTATAGGGGTGTGG 58.847 52.174 0.00 0.00 42.36 4.17
2814 3441 3.076333 GGAGCTCCTAGAGTTATAGGGGT 59.924 52.174 26.25 0.00 44.25 4.95
2818 3445 7.601856 CAATTCAGGAGCTCCTAGAGTTATAG 58.398 42.308 34.67 18.69 46.65 1.31
2820 3447 5.221621 GCAATTCAGGAGCTCCTAGAGTTAT 60.222 44.000 34.67 19.49 46.65 1.89
2827 3454 2.747467 GCATGCAATTCAGGAGCTCCTA 60.747 50.000 34.67 21.31 46.65 2.94
2829 3456 0.384669 GCATGCAATTCAGGAGCTCC 59.615 55.000 26.22 26.22 0.00 4.70
2841 3468 1.026182 GTCTCGACCATGGCATGCAA 61.026 55.000 22.02 9.21 0.00 4.08
2842 3469 1.450134 GTCTCGACCATGGCATGCA 60.450 57.895 22.02 6.13 0.00 3.96
2843 3470 0.816825 ATGTCTCGACCATGGCATGC 60.817 55.000 22.02 9.90 0.00 4.06
2844 3471 0.942252 CATGTCTCGACCATGGCATG 59.058 55.000 20.56 20.56 0.00 4.06
2845 3472 0.816825 GCATGTCTCGACCATGGCAT 60.817 55.000 13.04 2.75 0.00 4.40
2846 3473 1.450134 GCATGTCTCGACCATGGCA 60.450 57.895 13.04 0.00 0.00 4.92
2847 3474 2.182842 GGCATGTCTCGACCATGGC 61.183 63.158 22.86 22.86 42.89 4.40
2872 3500 4.615912 GCAACGAAAACACTAGCATGGAAT 60.616 41.667 0.00 0.00 0.00 3.01
2875 3503 2.226437 AGCAACGAAAACACTAGCATGG 59.774 45.455 0.00 0.00 0.00 3.66
2878 3506 1.871039 GGAGCAACGAAAACACTAGCA 59.129 47.619 0.00 0.00 0.00 3.49
2879 3507 1.197036 GGGAGCAACGAAAACACTAGC 59.803 52.381 0.00 0.00 0.00 3.42
2891 3519 3.607370 GAGGACCACCGGGAGCAAC 62.607 68.421 6.32 0.00 41.83 4.17
2918 3546 5.838521 AGTTTTAACCATGGATCAACAACCT 59.161 36.000 21.47 0.00 0.00 3.50
2921 3549 6.723298 ACAGTTTTAACCATGGATCAACAA 57.277 33.333 21.47 0.00 0.00 2.83
2922 3550 6.511416 CAACAGTTTTAACCATGGATCAACA 58.489 36.000 21.47 0.00 0.00 3.33
2924 3552 5.510520 GGCAACAGTTTTAACCATGGATCAA 60.511 40.000 21.47 0.62 0.00 2.57
2943 3571 3.425193 GTGACGATTCAACAATTGGCAAC 59.575 43.478 10.83 0.00 42.33 4.17
2947 3575 4.216257 AGGAAGTGACGATTCAACAATTGG 59.784 41.667 10.83 0.00 31.90 3.16
2949 3577 6.391227 AAAGGAAGTGACGATTCAACAATT 57.609 33.333 0.00 0.00 31.90 2.32
2950 3578 6.391227 AAAAGGAAGTGACGATTCAACAAT 57.609 33.333 0.00 0.00 31.90 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.