Multiple sequence alignment - TraesCS6B01G161000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G161000 chr6B 100.000 4817 0 0 1 4817 164613051 164608235 0.000000e+00 8896
1 TraesCS6B01G161000 chr6B 86.461 421 49 6 1 418 472400551 472400966 5.680000e-124 455
2 TraesCS6B01G161000 chr6D 94.828 3132 93 14 451 3565 86873752 86870673 0.000000e+00 4822
3 TraesCS6B01G161000 chr6D 97.054 1256 37 0 3562 4817 86870613 86869358 0.000000e+00 2115
4 TraesCS6B01G161000 chr6D 84.272 426 51 12 1 418 289499089 289498672 7.510000e-108 401
5 TraesCS6B01G161000 chr5D 85.238 420 54 6 1 417 410848187 410848601 4.460000e-115 425
6 TraesCS6B01G161000 chr5D 84.086 421 60 5 1 418 1594268 1594684 2.700000e-107 399
7 TraesCS6B01G161000 chr7D 85.036 421 56 5 1 418 621300541 621300125 5.760000e-114 422
8 TraesCS6B01G161000 chr2D 84.597 422 54 8 1 417 257409126 257408711 4.490000e-110 409
9 TraesCS6B01G161000 chr2D 84.323 421 57 7 1 418 551154386 551154800 2.090000e-108 403
10 TraesCS6B01G161000 chr1A 84.524 420 58 4 1 417 575906783 575907198 4.490000e-110 409
11 TraesCS6B01G161000 chr1D 84.198 424 51 11 1 419 28031778 28031366 9.710000e-107 398


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G161000 chr6B 164608235 164613051 4816 True 8896.0 8896 100.000 1 4817 1 chr6B.!!$R1 4816
1 TraesCS6B01G161000 chr6D 86869358 86873752 4394 True 3468.5 4822 95.941 451 4817 2 chr6D.!!$R2 4366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.034380 AGTCTGCACGTAGCTAGGGA 60.034 55.000 17.23 2.62 45.94 4.20 F
1550 1555 0.034670 AAGGAGTTGCTGGATCCTGC 60.035 55.000 30.90 30.90 42.72 4.85 F
2040 2057 0.033504 TGAGGGTTGACGAGTTGCTC 59.966 55.000 0.00 0.00 0.00 4.26 F
2070 2087 0.820871 AGAGGATCGACAAGTCTGCC 59.179 55.000 0.00 0.00 42.67 4.85 F
2098 2115 1.202177 CCATAACTGATGTGCAACGCC 60.202 52.381 0.00 0.00 42.39 5.68 F
2462 2479 1.382692 GCTTTGCAGATCCTGGAGGC 61.383 60.000 1.52 6.69 32.58 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2037 0.034059 AGCAACTCGTCAACCCTCAG 59.966 55.0 0.00 0.00 0.00 3.35 R
2476 2493 0.107993 TCTTCCGGCAGCATCTTCAG 60.108 55.0 0.00 0.00 0.00 3.02 R
3204 3221 0.185901 ATGGTCACTTGTGGCCTTGT 59.814 50.0 22.65 8.42 0.00 3.16 R
3206 3223 0.251341 GGATGGTCACTTGTGGCCTT 60.251 55.0 22.65 17.33 0.00 4.35 R
3208 3225 0.251341 AAGGATGGTCACTTGTGGCC 60.251 55.0 16.66 16.66 0.00 5.36 R
4316 4397 0.729116 CTGGTGCCAAGTTCGCATAG 59.271 55.0 0.00 0.00 38.76 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.309296 TCTTCCAGAGACTCCAAGTTGT 58.691 45.455 1.45 0.00 0.00 3.32
22 23 4.480115 TCTTCCAGAGACTCCAAGTTGTA 58.520 43.478 1.45 0.00 0.00 2.41
23 24 5.087323 TCTTCCAGAGACTCCAAGTTGTAT 58.913 41.667 1.45 0.00 0.00 2.29
24 25 5.544176 TCTTCCAGAGACTCCAAGTTGTATT 59.456 40.000 1.45 0.00 0.00 1.89
25 26 5.407407 TCCAGAGACTCCAAGTTGTATTC 57.593 43.478 1.45 0.00 0.00 1.75
26 27 4.082190 TCCAGAGACTCCAAGTTGTATTCG 60.082 45.833 1.45 0.00 0.00 3.34
27 28 3.614616 CAGAGACTCCAAGTTGTATTCGC 59.385 47.826 1.45 0.00 0.00 4.70
28 29 3.511934 AGAGACTCCAAGTTGTATTCGCT 59.488 43.478 1.45 0.00 0.00 4.93
29 30 3.589988 AGACTCCAAGTTGTATTCGCTG 58.410 45.455 1.45 0.00 0.00 5.18
30 31 2.673368 GACTCCAAGTTGTATTCGCTGG 59.327 50.000 1.45 0.00 0.00 4.85
31 32 2.038557 ACTCCAAGTTGTATTCGCTGGT 59.961 45.455 1.45 0.00 0.00 4.00
32 33 2.416547 CTCCAAGTTGTATTCGCTGGTG 59.583 50.000 1.45 0.00 0.00 4.17
33 34 1.468520 CCAAGTTGTATTCGCTGGTGG 59.531 52.381 1.45 0.00 0.00 4.61
34 35 2.151202 CAAGTTGTATTCGCTGGTGGT 58.849 47.619 0.00 0.00 0.00 4.16
35 36 3.331150 CAAGTTGTATTCGCTGGTGGTA 58.669 45.455 0.00 0.00 0.00 3.25
36 37 2.968675 AGTTGTATTCGCTGGTGGTAC 58.031 47.619 0.00 0.00 0.00 3.34
37 38 2.565834 AGTTGTATTCGCTGGTGGTACT 59.434 45.455 0.00 0.00 0.00 2.73
38 39 3.007614 AGTTGTATTCGCTGGTGGTACTT 59.992 43.478 0.00 0.00 0.00 2.24
39 40 2.967362 TGTATTCGCTGGTGGTACTTG 58.033 47.619 0.00 0.00 0.00 3.16
40 41 2.277084 GTATTCGCTGGTGGTACTTGG 58.723 52.381 0.00 0.00 0.00 3.61
41 42 0.676782 ATTCGCTGGTGGTACTTGGC 60.677 55.000 0.00 0.00 0.00 4.52
42 43 3.118454 CGCTGGTGGTACTTGGCG 61.118 66.667 0.00 0.00 36.89 5.69
43 44 2.746277 GCTGGTGGTACTTGGCGG 60.746 66.667 0.00 0.00 0.00 6.13
44 45 2.746277 CTGGTGGTACTTGGCGGC 60.746 66.667 0.00 0.00 0.00 6.53
45 46 3.545124 CTGGTGGTACTTGGCGGCA 62.545 63.158 7.97 7.97 0.00 5.69
46 47 2.045340 GGTGGTACTTGGCGGCAT 60.045 61.111 14.32 0.14 0.00 4.40
47 48 2.406616 GGTGGTACTTGGCGGCATG 61.407 63.158 21.23 21.23 0.00 4.06
48 49 2.045438 TGGTACTTGGCGGCATGG 60.045 61.111 25.36 17.77 0.00 3.66
49 50 2.045340 GGTACTTGGCGGCATGGT 60.045 61.111 25.36 21.82 0.00 3.55
50 51 1.222387 GGTACTTGGCGGCATGGTA 59.778 57.895 25.36 20.92 0.00 3.25
51 52 1.093496 GGTACTTGGCGGCATGGTAC 61.093 60.000 29.80 29.80 34.00 3.34
52 53 0.107848 GTACTTGGCGGCATGGTACT 60.108 55.000 30.07 15.56 32.61 2.73
53 54 0.107897 TACTTGGCGGCATGGTACTG 60.108 55.000 25.36 8.13 0.00 2.74
54 55 2.749839 TTGGCGGCATGGTACTGC 60.750 61.111 14.32 0.00 41.53 4.40
58 59 3.195002 CGGCATGGTACTGCGGTG 61.195 66.667 8.92 0.00 43.23 4.94
59 60 2.046314 GGCATGGTACTGCGGTGT 60.046 61.111 8.92 0.00 43.23 4.16
60 61 1.219664 GGCATGGTACTGCGGTGTA 59.780 57.895 8.92 0.00 43.23 2.90
61 62 1.087771 GGCATGGTACTGCGGTGTAC 61.088 60.000 8.92 7.16 43.23 2.90
85 86 3.767230 CGACCGCAACGTGCTCAG 61.767 66.667 8.07 1.03 42.25 3.35
86 87 2.355837 GACCGCAACGTGCTCAGA 60.356 61.111 8.07 0.00 42.25 3.27
87 88 1.954146 GACCGCAACGTGCTCAGAA 60.954 57.895 8.07 0.00 42.25 3.02
88 89 1.891060 GACCGCAACGTGCTCAGAAG 61.891 60.000 8.07 0.00 42.25 2.85
89 90 1.956170 CCGCAACGTGCTCAGAAGT 60.956 57.895 8.07 0.00 42.25 3.01
90 91 1.488957 CGCAACGTGCTCAGAAGTC 59.511 57.895 8.07 0.00 42.25 3.01
91 92 0.941463 CGCAACGTGCTCAGAAGTCT 60.941 55.000 8.07 0.00 42.25 3.24
92 93 0.510359 GCAACGTGCTCAGAAGTCTG 59.490 55.000 1.65 1.65 40.96 3.51
93 94 0.510359 CAACGTGCTCAGAAGTCTGC 59.490 55.000 3.30 0.00 43.46 4.26
94 95 0.104855 AACGTGCTCAGAAGTCTGCA 59.895 50.000 3.30 0.00 43.46 4.41
96 97 2.148687 GTGCTCAGAAGTCTGCACG 58.851 57.895 7.71 0.00 44.60 5.34
97 98 0.598680 GTGCTCAGAAGTCTGCACGT 60.599 55.000 7.71 0.00 44.60 4.49
98 99 0.958822 TGCTCAGAAGTCTGCACGTA 59.041 50.000 3.30 0.00 43.46 3.57
99 100 1.068264 TGCTCAGAAGTCTGCACGTAG 60.068 52.381 3.30 0.00 43.46 3.51
100 101 1.623359 CTCAGAAGTCTGCACGTAGC 58.377 55.000 3.30 0.00 43.46 3.58
101 102 1.201181 CTCAGAAGTCTGCACGTAGCT 59.799 52.381 3.30 0.00 45.94 3.32
102 103 2.420372 CTCAGAAGTCTGCACGTAGCTA 59.580 50.000 3.30 0.00 45.94 3.32
103 104 2.420372 TCAGAAGTCTGCACGTAGCTAG 59.580 50.000 3.30 7.10 45.94 3.42
104 105 1.746220 AGAAGTCTGCACGTAGCTAGG 59.254 52.381 11.82 11.82 45.94 3.02
105 106 0.818296 AAGTCTGCACGTAGCTAGGG 59.182 55.000 17.23 7.76 45.94 3.53
106 107 0.034380 AGTCTGCACGTAGCTAGGGA 60.034 55.000 17.23 2.62 45.94 4.20
107 108 0.382515 GTCTGCACGTAGCTAGGGAG 59.617 60.000 17.23 9.71 45.94 4.30
116 117 2.496817 GCTAGGGAGCTGGTGTCG 59.503 66.667 0.00 0.00 45.98 4.35
117 118 2.352032 GCTAGGGAGCTGGTGTCGT 61.352 63.158 0.00 0.00 45.98 4.34
118 119 1.889530 GCTAGGGAGCTGGTGTCGTT 61.890 60.000 0.00 0.00 45.98 3.85
119 120 0.108615 CTAGGGAGCTGGTGTCGTTG 60.109 60.000 0.00 0.00 0.00 4.10
120 121 0.830444 TAGGGAGCTGGTGTCGTTGT 60.830 55.000 0.00 0.00 0.00 3.32
121 122 1.961277 GGGAGCTGGTGTCGTTGTG 60.961 63.158 0.00 0.00 0.00 3.33
122 123 2.607892 GGAGCTGGTGTCGTTGTGC 61.608 63.158 0.00 0.00 0.00 4.57
123 124 2.943345 GAGCTGGTGTCGTTGTGCG 61.943 63.158 0.00 0.00 43.01 5.34
124 125 4.666532 GCTGGTGTCGTTGTGCGC 62.667 66.667 0.00 0.00 41.07 6.09
125 126 4.354212 CTGGTGTCGTTGTGCGCG 62.354 66.667 0.00 0.00 41.07 6.86
127 128 4.643385 GGTGTCGTTGTGCGCGTG 62.643 66.667 8.43 0.00 41.07 5.34
128 129 4.643385 GTGTCGTTGTGCGCGTGG 62.643 66.667 8.43 0.00 41.07 4.94
130 131 4.643385 GTCGTTGTGCGCGTGGTG 62.643 66.667 8.43 0.00 41.07 4.17
141 142 4.953868 CGTGGTGGCGTTGACGGA 62.954 66.667 5.62 0.00 40.23 4.69
142 143 2.358247 GTGGTGGCGTTGACGGAT 60.358 61.111 5.62 0.00 40.23 4.18
143 144 2.358125 TGGTGGCGTTGACGGATG 60.358 61.111 5.62 0.00 40.23 3.51
144 145 3.124921 GGTGGCGTTGACGGATGG 61.125 66.667 5.62 0.00 40.23 3.51
145 146 3.799755 GTGGCGTTGACGGATGGC 61.800 66.667 5.62 0.00 40.23 4.40
156 157 3.316029 GGATGGCCGGACTGGTAA 58.684 61.111 9.82 0.00 41.21 2.85
157 158 1.146263 GGATGGCCGGACTGGTAAG 59.854 63.158 9.82 0.00 41.21 2.34
158 159 1.146263 GATGGCCGGACTGGTAAGG 59.854 63.158 9.82 0.00 41.21 2.69
159 160 1.306654 ATGGCCGGACTGGTAAGGA 60.307 57.895 9.82 0.00 41.21 3.36
160 161 0.694444 ATGGCCGGACTGGTAAGGAT 60.694 55.000 9.82 0.00 41.21 3.24
161 162 1.146263 GGCCGGACTGGTAAGGATG 59.854 63.158 5.05 0.00 41.21 3.51
162 163 1.335132 GGCCGGACTGGTAAGGATGA 61.335 60.000 5.05 0.00 41.21 2.92
163 164 0.759346 GCCGGACTGGTAAGGATGAT 59.241 55.000 5.05 0.00 41.21 2.45
164 165 1.541233 GCCGGACTGGTAAGGATGATG 60.541 57.143 5.05 0.00 41.21 3.07
165 166 1.541233 CCGGACTGGTAAGGATGATGC 60.541 57.143 0.00 0.00 0.00 3.91
166 167 1.869754 CGGACTGGTAAGGATGATGCG 60.870 57.143 0.00 0.00 0.00 4.73
167 168 1.541233 GGACTGGTAAGGATGATGCGG 60.541 57.143 0.00 0.00 0.00 5.69
168 169 1.412710 GACTGGTAAGGATGATGCGGA 59.587 52.381 0.00 0.00 0.00 5.54
169 170 2.037772 GACTGGTAAGGATGATGCGGAT 59.962 50.000 0.00 0.00 0.00 4.18
170 171 2.037772 ACTGGTAAGGATGATGCGGATC 59.962 50.000 10.37 10.37 0.00 3.36
171 172 2.301296 CTGGTAAGGATGATGCGGATCT 59.699 50.000 18.23 3.60 0.00 2.75
172 173 2.300152 TGGTAAGGATGATGCGGATCTC 59.700 50.000 18.23 12.11 0.00 2.75
173 174 2.564947 GGTAAGGATGATGCGGATCTCT 59.435 50.000 18.23 9.81 0.00 3.10
174 175 3.007398 GGTAAGGATGATGCGGATCTCTT 59.993 47.826 18.23 18.24 0.00 2.85
175 176 3.853355 AAGGATGATGCGGATCTCTTT 57.147 42.857 18.23 11.91 0.00 2.52
176 177 3.399440 AGGATGATGCGGATCTCTTTC 57.601 47.619 18.23 9.27 0.00 2.62
177 178 2.038295 AGGATGATGCGGATCTCTTTCC 59.962 50.000 18.23 16.62 0.00 3.13
178 179 2.038295 GGATGATGCGGATCTCTTTCCT 59.962 50.000 18.23 0.00 33.30 3.36
179 180 2.609427 TGATGCGGATCTCTTTCCTG 57.391 50.000 18.23 0.00 33.30 3.86
180 181 2.110578 TGATGCGGATCTCTTTCCTGA 58.889 47.619 18.23 0.00 33.30 3.86
181 182 2.501316 TGATGCGGATCTCTTTCCTGAA 59.499 45.455 18.23 0.00 33.30 3.02
182 183 2.680312 TGCGGATCTCTTTCCTGAAG 57.320 50.000 0.00 0.00 36.67 3.02
183 184 2.179427 TGCGGATCTCTTTCCTGAAGA 58.821 47.619 0.00 0.00 42.03 2.87
184 185 2.768527 TGCGGATCTCTTTCCTGAAGAT 59.231 45.455 0.00 0.00 43.23 2.40
185 186 3.129871 GCGGATCTCTTTCCTGAAGATG 58.870 50.000 0.00 0.00 43.23 2.90
186 187 3.181471 GCGGATCTCTTTCCTGAAGATGA 60.181 47.826 0.00 0.00 43.23 2.92
187 188 4.619973 CGGATCTCTTTCCTGAAGATGAG 58.380 47.826 0.00 0.00 43.23 2.90
188 189 4.099266 CGGATCTCTTTCCTGAAGATGAGT 59.901 45.833 0.00 0.00 43.23 3.41
189 190 5.358922 GGATCTCTTTCCTGAAGATGAGTG 58.641 45.833 0.00 0.00 43.23 3.51
190 191 4.199432 TCTCTTTCCTGAAGATGAGTGC 57.801 45.455 0.00 0.00 43.23 4.40
191 192 2.928757 CTCTTTCCTGAAGATGAGTGCG 59.071 50.000 0.00 0.00 43.23 5.34
192 193 2.562738 TCTTTCCTGAAGATGAGTGCGA 59.437 45.455 0.00 0.00 39.44 5.10
193 194 3.196469 TCTTTCCTGAAGATGAGTGCGAT 59.804 43.478 0.00 0.00 39.44 4.58
194 195 3.616956 TTCCTGAAGATGAGTGCGATT 57.383 42.857 0.00 0.00 0.00 3.34
195 196 3.170791 TCCTGAAGATGAGTGCGATTC 57.829 47.619 0.00 0.00 0.00 2.52
196 197 1.857217 CCTGAAGATGAGTGCGATTCG 59.143 52.381 0.62 0.62 0.00 3.34
197 198 2.480244 CCTGAAGATGAGTGCGATTCGA 60.480 50.000 10.88 0.00 0.00 3.71
198 199 3.379240 CTGAAGATGAGTGCGATTCGAT 58.621 45.455 10.88 0.00 0.00 3.59
199 200 3.118542 TGAAGATGAGTGCGATTCGATG 58.881 45.455 10.88 0.00 0.00 3.84
200 201 3.181487 TGAAGATGAGTGCGATTCGATGA 60.181 43.478 10.88 0.00 0.00 2.92
201 202 3.657015 AGATGAGTGCGATTCGATGAT 57.343 42.857 10.88 0.00 0.00 2.45
202 203 3.315418 AGATGAGTGCGATTCGATGATG 58.685 45.455 10.88 0.00 0.00 3.07
203 204 2.869233 TGAGTGCGATTCGATGATGA 57.131 45.000 10.88 0.00 0.00 2.92
204 205 3.375782 TGAGTGCGATTCGATGATGAT 57.624 42.857 10.88 0.00 0.00 2.45
205 206 3.054878 TGAGTGCGATTCGATGATGATG 58.945 45.455 10.88 0.00 0.00 3.07
206 207 2.410939 AGTGCGATTCGATGATGATGG 58.589 47.619 10.88 0.00 0.00 3.51
207 208 1.136141 GTGCGATTCGATGATGATGGC 60.136 52.381 10.88 0.00 0.00 4.40
208 209 1.150827 GCGATTCGATGATGATGGCA 58.849 50.000 10.88 0.00 0.00 4.92
209 210 1.532437 GCGATTCGATGATGATGGCAA 59.468 47.619 10.88 0.00 0.00 4.52
210 211 2.663879 GCGATTCGATGATGATGGCAAC 60.664 50.000 10.88 0.00 0.00 4.17
211 212 2.804527 CGATTCGATGATGATGGCAACT 59.195 45.455 0.00 0.00 37.61 3.16
212 213 3.249320 CGATTCGATGATGATGGCAACTT 59.751 43.478 0.00 0.00 37.61 2.66
213 214 4.610007 CGATTCGATGATGATGGCAACTTC 60.610 45.833 0.00 0.00 41.00 3.01
214 215 3.548745 TCGATGATGATGGCAACTTCT 57.451 42.857 11.07 0.00 41.19 2.85
215 216 4.670896 TCGATGATGATGGCAACTTCTA 57.329 40.909 11.07 0.50 41.19 2.10
216 217 5.022282 TCGATGATGATGGCAACTTCTAA 57.978 39.130 11.07 0.00 41.19 2.10
217 218 5.427378 TCGATGATGATGGCAACTTCTAAA 58.573 37.500 11.07 0.00 41.19 1.85
218 219 5.879777 TCGATGATGATGGCAACTTCTAAAA 59.120 36.000 11.07 0.00 41.19 1.52
219 220 5.967674 CGATGATGATGGCAACTTCTAAAAC 59.032 40.000 11.07 0.32 41.19 2.43
220 221 5.295431 TGATGATGGCAACTTCTAAAACG 57.705 39.130 11.07 0.00 41.19 3.60
221 222 4.759693 TGATGATGGCAACTTCTAAAACGT 59.240 37.500 11.07 0.00 41.19 3.99
222 223 4.481930 TGATGGCAACTTCTAAAACGTG 57.518 40.909 0.00 0.00 41.19 4.49
223 224 3.880490 TGATGGCAACTTCTAAAACGTGT 59.120 39.130 0.00 0.00 41.19 4.49
224 225 3.684103 TGGCAACTTCTAAAACGTGTG 57.316 42.857 0.00 0.00 37.61 3.82
225 226 2.223386 TGGCAACTTCTAAAACGTGTGC 60.223 45.455 0.00 0.00 37.61 4.57
226 227 2.223386 GGCAACTTCTAAAACGTGTGCA 60.223 45.455 0.00 0.00 0.00 4.57
227 228 3.550030 GGCAACTTCTAAAACGTGTGCAT 60.550 43.478 0.00 0.00 0.00 3.96
228 229 3.421888 GCAACTTCTAAAACGTGTGCATG 59.578 43.478 0.00 0.00 0.00 4.06
229 230 4.597079 CAACTTCTAAAACGTGTGCATGT 58.403 39.130 0.00 0.00 0.00 3.21
230 231 4.209452 ACTTCTAAAACGTGTGCATGTG 57.791 40.909 0.00 0.00 0.00 3.21
231 232 3.003275 ACTTCTAAAACGTGTGCATGTGG 59.997 43.478 0.00 0.00 0.00 4.17
232 233 2.566913 TCTAAAACGTGTGCATGTGGT 58.433 42.857 0.00 0.00 0.00 4.16
233 234 2.289274 TCTAAAACGTGTGCATGTGGTG 59.711 45.455 0.00 0.00 0.00 4.17
234 235 0.814457 AAAACGTGTGCATGTGGTGT 59.186 45.000 0.00 0.00 0.00 4.16
235 236 1.669604 AAACGTGTGCATGTGGTGTA 58.330 45.000 0.00 0.00 0.00 2.90
236 237 0.941542 AACGTGTGCATGTGGTGTAC 59.058 50.000 0.00 0.00 42.96 2.90
237 238 1.218875 ACGTGTGCATGTGGTGTACG 61.219 55.000 0.00 0.00 45.25 3.67
238 239 1.206578 GTGTGCATGTGGTGTACGC 59.793 57.895 0.00 0.00 45.25 4.42
239 240 1.070615 TGTGCATGTGGTGTACGCT 59.929 52.632 6.35 0.00 45.25 5.07
240 241 0.533978 TGTGCATGTGGTGTACGCTT 60.534 50.000 6.35 0.00 45.25 4.68
241 242 0.591170 GTGCATGTGGTGTACGCTTT 59.409 50.000 6.35 0.00 33.74 3.51
242 243 1.801771 GTGCATGTGGTGTACGCTTTA 59.198 47.619 6.35 0.00 33.74 1.85
243 244 2.073056 TGCATGTGGTGTACGCTTTAG 58.927 47.619 6.35 0.00 0.00 1.85
244 245 1.396996 GCATGTGGTGTACGCTTTAGG 59.603 52.381 6.35 0.00 0.00 2.69
245 246 2.695359 CATGTGGTGTACGCTTTAGGT 58.305 47.619 6.35 0.00 0.00 3.08
246 247 2.914695 TGTGGTGTACGCTTTAGGTT 57.085 45.000 6.35 0.00 0.00 3.50
247 248 3.196939 TGTGGTGTACGCTTTAGGTTT 57.803 42.857 6.35 0.00 0.00 3.27
248 249 2.873472 TGTGGTGTACGCTTTAGGTTTG 59.127 45.455 6.35 0.00 0.00 2.93
249 250 1.874872 TGGTGTACGCTTTAGGTTTGC 59.125 47.619 6.35 0.00 0.00 3.68
250 251 2.148768 GGTGTACGCTTTAGGTTTGCT 58.851 47.619 6.35 0.00 0.00 3.91
251 252 2.095919 GGTGTACGCTTTAGGTTTGCTG 60.096 50.000 6.35 0.00 0.00 4.41
252 253 1.533731 TGTACGCTTTAGGTTTGCTGC 59.466 47.619 0.00 0.00 0.00 5.25
253 254 1.533731 GTACGCTTTAGGTTTGCTGCA 59.466 47.619 0.00 0.00 0.00 4.41
254 255 1.247567 ACGCTTTAGGTTTGCTGCAT 58.752 45.000 1.84 0.00 0.00 3.96
255 256 1.200020 ACGCTTTAGGTTTGCTGCATC 59.800 47.619 1.84 0.00 0.00 3.91
256 257 1.791555 CGCTTTAGGTTTGCTGCATCG 60.792 52.381 1.84 0.00 0.00 3.84
257 258 1.468054 GCTTTAGGTTTGCTGCATCGG 60.468 52.381 1.84 0.00 0.00 4.18
258 259 1.133025 CTTTAGGTTTGCTGCATCGGG 59.867 52.381 1.84 0.00 0.00 5.14
259 260 0.037590 TTAGGTTTGCTGCATCGGGT 59.962 50.000 1.84 0.00 0.00 5.28
260 261 0.676466 TAGGTTTGCTGCATCGGGTG 60.676 55.000 1.84 0.00 0.00 4.61
261 262 2.268076 GGTTTGCTGCATCGGGTGT 61.268 57.895 1.84 0.00 0.00 4.16
262 263 1.659794 GTTTGCTGCATCGGGTGTT 59.340 52.632 1.84 0.00 0.00 3.32
263 264 0.664166 GTTTGCTGCATCGGGTGTTG 60.664 55.000 1.84 0.00 0.00 3.33
264 265 1.804396 TTTGCTGCATCGGGTGTTGG 61.804 55.000 1.84 0.00 0.00 3.77
265 266 2.672996 GCTGCATCGGGTGTTGGT 60.673 61.111 0.00 0.00 0.00 3.67
266 267 2.268076 GCTGCATCGGGTGTTGGTT 61.268 57.895 0.00 0.00 0.00 3.67
267 268 1.875963 CTGCATCGGGTGTTGGTTC 59.124 57.895 0.00 0.00 0.00 3.62
268 269 1.586154 CTGCATCGGGTGTTGGTTCC 61.586 60.000 0.00 0.00 0.00 3.62
269 270 2.686816 GCATCGGGTGTTGGTTCCG 61.687 63.158 0.00 0.00 44.59 4.30
271 272 2.422591 TCGGGTGTTGGTTCCGAC 59.577 61.111 0.00 2.46 46.48 4.79
272 273 2.109387 CGGGTGTTGGTTCCGACA 59.891 61.111 7.74 7.74 45.96 4.35
273 274 2.248835 CGGGTGTTGGTTCCGACAC 61.249 63.158 25.85 25.85 45.96 3.67
274 275 2.248835 GGGTGTTGGTTCCGACACG 61.249 63.158 26.36 0.00 46.71 4.49
275 276 1.522130 GGTGTTGGTTCCGACACGT 60.522 57.895 26.36 0.00 46.71 4.49
276 277 1.091197 GGTGTTGGTTCCGACACGTT 61.091 55.000 26.36 0.00 46.71 3.99
277 278 1.569708 GTGTTGGTTCCGACACGTTA 58.430 50.000 21.74 0.00 40.25 3.18
278 279 2.137523 GTGTTGGTTCCGACACGTTAT 58.862 47.619 21.74 0.00 40.25 1.89
279 280 2.096614 GTGTTGGTTCCGACACGTTATG 60.097 50.000 21.74 0.00 40.25 1.90
280 281 1.136169 GTTGGTTCCGACACGTTATGC 60.136 52.381 4.49 0.00 0.00 3.14
282 283 1.689352 GGTTCCGACACGTTATGCGG 61.689 60.000 8.38 8.38 46.52 5.69
284 285 1.811195 TCCGACACGTTATGCGGAT 59.189 52.632 12.17 0.00 45.78 4.18
285 286 0.526739 TCCGACACGTTATGCGGATG 60.527 55.000 12.17 0.00 45.78 3.51
286 287 1.487452 CCGACACGTTATGCGGATGG 61.487 60.000 0.00 0.00 45.37 3.51
287 288 0.526739 CGACACGTTATGCGGATGGA 60.527 55.000 0.00 0.00 46.52 3.41
288 289 1.865865 GACACGTTATGCGGATGGAT 58.134 50.000 0.00 0.00 46.52 3.41
289 290 1.792949 GACACGTTATGCGGATGGATC 59.207 52.381 0.00 0.00 46.52 3.36
290 291 0.784178 CACGTTATGCGGATGGATCG 59.216 55.000 0.00 1.74 46.52 3.69
291 292 0.319555 ACGTTATGCGGATGGATCGG 60.320 55.000 0.00 0.00 46.52 4.18
307 308 2.968697 GGCGACGACACCGGTTTT 60.969 61.111 2.97 0.00 40.78 2.43
308 309 1.664333 GGCGACGACACCGGTTTTA 60.664 57.895 2.97 0.00 40.78 1.52
309 310 1.620413 GGCGACGACACCGGTTTTAG 61.620 60.000 2.97 0.00 40.78 1.85
310 311 0.664166 GCGACGACACCGGTTTTAGA 60.664 55.000 2.97 0.00 40.78 2.10
311 312 1.986698 CGACGACACCGGTTTTAGAT 58.013 50.000 2.97 0.00 40.78 1.98
312 313 2.731968 GCGACGACACCGGTTTTAGATA 60.732 50.000 2.97 0.00 40.78 1.98
313 314 3.699067 CGACGACACCGGTTTTAGATAT 58.301 45.455 2.97 0.00 40.78 1.63
314 315 3.484649 CGACGACACCGGTTTTAGATATG 59.515 47.826 2.97 0.00 40.78 1.78
315 316 4.675510 GACGACACCGGTTTTAGATATGA 58.324 43.478 2.97 0.00 40.78 2.15
316 317 4.679662 ACGACACCGGTTTTAGATATGAG 58.320 43.478 2.97 0.00 40.78 2.90
317 318 4.049186 CGACACCGGTTTTAGATATGAGG 58.951 47.826 2.97 0.00 0.00 3.86
318 319 4.202080 CGACACCGGTTTTAGATATGAGGA 60.202 45.833 2.97 0.00 0.00 3.71
319 320 5.277857 ACACCGGTTTTAGATATGAGGAG 57.722 43.478 2.97 0.00 0.00 3.69
320 321 4.715297 ACACCGGTTTTAGATATGAGGAGT 59.285 41.667 2.97 0.00 0.00 3.85
321 322 5.050490 CACCGGTTTTAGATATGAGGAGTG 58.950 45.833 2.97 0.00 0.00 3.51
322 323 4.960469 ACCGGTTTTAGATATGAGGAGTGA 59.040 41.667 0.00 0.00 0.00 3.41
323 324 5.069251 ACCGGTTTTAGATATGAGGAGTGAG 59.931 44.000 0.00 0.00 0.00 3.51
324 325 5.302059 CCGGTTTTAGATATGAGGAGTGAGA 59.698 44.000 0.00 0.00 0.00 3.27
325 326 6.442952 CGGTTTTAGATATGAGGAGTGAGAG 58.557 44.000 0.00 0.00 0.00 3.20
326 327 6.220201 GGTTTTAGATATGAGGAGTGAGAGC 58.780 44.000 0.00 0.00 0.00 4.09
327 328 6.183360 GGTTTTAGATATGAGGAGTGAGAGCA 60.183 42.308 0.00 0.00 0.00 4.26
328 329 6.398234 TTTAGATATGAGGAGTGAGAGCAC 57.602 41.667 0.00 0.00 45.49 4.40
343 344 6.520272 GTGAGAGCACTCCATATTATTGAGT 58.480 40.000 8.77 4.91 41.84 3.41
344 345 6.989169 GTGAGAGCACTCCATATTATTGAGTT 59.011 38.462 8.77 0.00 41.84 3.01
345 346 7.497249 GTGAGAGCACTCCATATTATTGAGTTT 59.503 37.037 8.77 1.13 41.84 2.66
346 347 7.496920 TGAGAGCACTCCATATTATTGAGTTTG 59.503 37.037 8.77 1.00 41.99 2.93
347 348 7.341805 AGAGCACTCCATATTATTGAGTTTGT 58.658 34.615 7.50 0.00 37.25 2.83
348 349 8.486210 AGAGCACTCCATATTATTGAGTTTGTA 58.514 33.333 7.50 0.00 37.25 2.41
349 350 8.668510 AGCACTCCATATTATTGAGTTTGTAG 57.331 34.615 7.50 0.00 37.25 2.74
350 351 7.716998 AGCACTCCATATTATTGAGTTTGTAGG 59.283 37.037 7.50 0.00 37.25 3.18
351 352 7.499232 GCACTCCATATTATTGAGTTTGTAGGT 59.501 37.037 7.50 0.00 37.25 3.08
352 353 8.830580 CACTCCATATTATTGAGTTTGTAGGTG 58.169 37.037 7.50 0.00 37.25 4.00
353 354 7.499232 ACTCCATATTATTGAGTTTGTAGGTGC 59.501 37.037 4.91 0.00 35.93 5.01
354 355 6.481976 TCCATATTATTGAGTTTGTAGGTGCG 59.518 38.462 0.00 0.00 0.00 5.34
355 356 6.481976 CCATATTATTGAGTTTGTAGGTGCGA 59.518 38.462 0.00 0.00 0.00 5.10
356 357 7.307396 CCATATTATTGAGTTTGTAGGTGCGAG 60.307 40.741 0.00 0.00 0.00 5.03
357 358 2.902705 TTGAGTTTGTAGGTGCGAGT 57.097 45.000 0.00 0.00 0.00 4.18
358 359 2.148916 TGAGTTTGTAGGTGCGAGTG 57.851 50.000 0.00 0.00 0.00 3.51
359 360 1.270094 TGAGTTTGTAGGTGCGAGTGG 60.270 52.381 0.00 0.00 0.00 4.00
360 361 0.756903 AGTTTGTAGGTGCGAGTGGT 59.243 50.000 0.00 0.00 0.00 4.16
361 362 0.865769 GTTTGTAGGTGCGAGTGGTG 59.134 55.000 0.00 0.00 0.00 4.17
362 363 0.250124 TTTGTAGGTGCGAGTGGTGG 60.250 55.000 0.00 0.00 0.00 4.61
363 364 2.434359 GTAGGTGCGAGTGGTGGC 60.434 66.667 0.00 0.00 0.00 5.01
364 365 2.603473 TAGGTGCGAGTGGTGGCT 60.603 61.111 0.00 0.00 0.00 4.75
365 366 2.214216 TAGGTGCGAGTGGTGGCTT 61.214 57.895 0.00 0.00 0.00 4.35
366 367 2.167398 TAGGTGCGAGTGGTGGCTTC 62.167 60.000 0.00 0.00 0.00 3.86
367 368 2.280797 GTGCGAGTGGTGGCTTCA 60.281 61.111 0.00 0.00 0.00 3.02
368 369 2.031012 TGCGAGTGGTGGCTTCAG 59.969 61.111 0.00 0.00 0.00 3.02
369 370 2.743928 GCGAGTGGTGGCTTCAGG 60.744 66.667 0.00 0.00 0.00 3.86
370 371 2.743718 CGAGTGGTGGCTTCAGGT 59.256 61.111 0.00 0.00 0.00 4.00
371 372 1.669115 CGAGTGGTGGCTTCAGGTG 60.669 63.158 0.00 0.00 0.00 4.00
372 373 1.302832 GAGTGGTGGCTTCAGGTGG 60.303 63.158 0.00 0.00 0.00 4.61
373 374 2.985847 GTGGTGGCTTCAGGTGGC 60.986 66.667 0.00 0.00 0.00 5.01
374 375 3.177884 TGGTGGCTTCAGGTGGCT 61.178 61.111 0.00 0.00 0.00 4.75
375 376 2.116125 GGTGGCTTCAGGTGGCTT 59.884 61.111 0.00 0.00 0.00 4.35
376 377 2.270986 GGTGGCTTCAGGTGGCTTG 61.271 63.158 0.00 0.00 0.00 4.01
377 378 1.228245 GTGGCTTCAGGTGGCTTGA 60.228 57.895 0.00 0.00 0.00 3.02
378 379 0.610232 GTGGCTTCAGGTGGCTTGAT 60.610 55.000 0.00 0.00 0.00 2.57
379 380 0.609957 TGGCTTCAGGTGGCTTGATG 60.610 55.000 0.00 0.00 0.00 3.07
380 381 0.610232 GGCTTCAGGTGGCTTGATGT 60.610 55.000 0.00 0.00 0.00 3.06
381 382 1.340017 GGCTTCAGGTGGCTTGATGTA 60.340 52.381 0.00 0.00 0.00 2.29
382 383 1.740025 GCTTCAGGTGGCTTGATGTAC 59.260 52.381 0.00 0.00 0.00 2.90
383 384 2.002586 CTTCAGGTGGCTTGATGTACG 58.997 52.381 0.00 0.00 0.00 3.67
384 385 0.973632 TCAGGTGGCTTGATGTACGT 59.026 50.000 0.00 0.00 0.00 3.57
385 386 1.346395 TCAGGTGGCTTGATGTACGTT 59.654 47.619 0.00 0.00 0.00 3.99
386 387 1.732259 CAGGTGGCTTGATGTACGTTC 59.268 52.381 0.00 0.00 0.00 3.95
387 388 1.623811 AGGTGGCTTGATGTACGTTCT 59.376 47.619 0.00 0.00 0.00 3.01
388 389 2.038557 AGGTGGCTTGATGTACGTTCTT 59.961 45.455 0.00 0.00 0.00 2.52
389 390 2.159627 GGTGGCTTGATGTACGTTCTTG 59.840 50.000 0.00 0.00 0.00 3.02
390 391 2.806244 GTGGCTTGATGTACGTTCTTGT 59.194 45.455 0.00 0.00 0.00 3.16
391 392 2.805671 TGGCTTGATGTACGTTCTTGTG 59.194 45.455 0.00 0.00 0.00 3.33
392 393 2.159627 GGCTTGATGTACGTTCTTGTGG 59.840 50.000 0.00 0.00 0.00 4.17
393 394 2.806244 GCTTGATGTACGTTCTTGTGGT 59.194 45.455 0.00 0.00 0.00 4.16
394 395 3.991773 GCTTGATGTACGTTCTTGTGGTA 59.008 43.478 0.00 0.00 0.00 3.25
395 396 4.143179 GCTTGATGTACGTTCTTGTGGTAC 60.143 45.833 0.00 0.00 37.59 3.34
396 397 3.916761 TGATGTACGTTCTTGTGGTACC 58.083 45.455 4.43 4.43 36.55 3.34
397 398 3.575256 TGATGTACGTTCTTGTGGTACCT 59.425 43.478 14.36 0.00 36.55 3.08
398 399 4.039488 TGATGTACGTTCTTGTGGTACCTT 59.961 41.667 14.36 0.00 36.55 3.50
399 400 4.405116 TGTACGTTCTTGTGGTACCTTT 57.595 40.909 14.36 0.00 36.55 3.11
400 401 4.121317 TGTACGTTCTTGTGGTACCTTTG 58.879 43.478 14.36 1.06 36.55 2.77
401 402 3.271055 ACGTTCTTGTGGTACCTTTGT 57.729 42.857 14.36 0.00 0.00 2.83
402 403 3.613030 ACGTTCTTGTGGTACCTTTGTT 58.387 40.909 14.36 0.00 0.00 2.83
403 404 3.375922 ACGTTCTTGTGGTACCTTTGTTG 59.624 43.478 14.36 0.00 0.00 3.33
404 405 3.623960 CGTTCTTGTGGTACCTTTGTTGA 59.376 43.478 14.36 1.40 0.00 3.18
405 406 4.095185 CGTTCTTGTGGTACCTTTGTTGAA 59.905 41.667 14.36 7.38 0.00 2.69
406 407 5.220970 CGTTCTTGTGGTACCTTTGTTGAAT 60.221 40.000 14.36 0.00 0.00 2.57
407 408 6.017770 CGTTCTTGTGGTACCTTTGTTGAATA 60.018 38.462 14.36 0.00 0.00 1.75
408 409 7.467539 CGTTCTTGTGGTACCTTTGTTGAATAA 60.468 37.037 14.36 0.00 0.00 1.40
409 410 8.357402 GTTCTTGTGGTACCTTTGTTGAATAAT 58.643 33.333 14.36 0.00 0.00 1.28
410 411 8.472007 TCTTGTGGTACCTTTGTTGAATAATT 57.528 30.769 14.36 0.00 0.00 1.40
411 412 9.575868 TCTTGTGGTACCTTTGTTGAATAATTA 57.424 29.630 14.36 0.00 0.00 1.40
526 527 9.123902 CCAATAGTCCAAAATGAACTGATATGA 57.876 33.333 0.00 0.00 0.00 2.15
530 531 8.447924 AGTCCAAAATGAACTGATATGATCTG 57.552 34.615 0.00 0.00 0.00 2.90
531 532 8.270030 AGTCCAAAATGAACTGATATGATCTGA 58.730 33.333 0.00 0.00 33.12 3.27
532 533 9.064706 GTCCAAAATGAACTGATATGATCTGAT 57.935 33.333 0.00 0.00 33.12 2.90
553 554 7.708322 TCTGATATGCTAGTGAAATGAACTGAC 59.292 37.037 0.00 0.00 0.00 3.51
554 555 7.330262 TGATATGCTAGTGAAATGAACTGACA 58.670 34.615 0.00 0.00 0.00 3.58
555 556 7.989170 TGATATGCTAGTGAAATGAACTGACAT 59.011 33.333 0.00 0.00 32.55 3.06
556 557 9.481340 GATATGCTAGTGAAATGAACTGACATA 57.519 33.333 0.00 0.00 34.27 2.29
650 651 5.963176 TCACATTATGCACACATTGTTCT 57.037 34.783 0.00 0.00 37.74 3.01
668 669 1.000163 TCTGACGAAAGCAGTCTGGTC 60.000 52.381 4.74 2.31 39.24 4.02
689 690 3.065648 TCCGTTTCAAAACAGTAAGCCAC 59.934 43.478 6.45 0.00 38.81 5.01
710 711 1.426423 GAGAGACGTTTCGTTTCCCC 58.574 55.000 8.71 0.07 40.97 4.81
772 773 4.528121 CCCCCTTCTCCTTCCCAT 57.472 61.111 0.00 0.00 0.00 4.00
773 774 2.235570 CCCCCTTCTCCTTCCCATC 58.764 63.158 0.00 0.00 0.00 3.51
774 775 0.327964 CCCCCTTCTCCTTCCCATCT 60.328 60.000 0.00 0.00 0.00 2.90
775 776 1.135960 CCCCTTCTCCTTCCCATCTC 58.864 60.000 0.00 0.00 0.00 2.75
776 777 1.135960 CCCTTCTCCTTCCCATCTCC 58.864 60.000 0.00 0.00 0.00 3.71
777 778 0.755686 CCTTCTCCTTCCCATCTCCG 59.244 60.000 0.00 0.00 0.00 4.63
778 779 0.105778 CTTCTCCTTCCCATCTCCGC 59.894 60.000 0.00 0.00 0.00 5.54
779 780 1.338136 TTCTCCTTCCCATCTCCGCC 61.338 60.000 0.00 0.00 0.00 6.13
804 805 2.613977 CCAAACCAGCAAACAAACCACA 60.614 45.455 0.00 0.00 0.00 4.17
806 807 0.534873 ACCAGCAAACAAACCACACC 59.465 50.000 0.00 0.00 0.00 4.16
807 808 0.179086 CCAGCAAACAAACCACACCC 60.179 55.000 0.00 0.00 0.00 4.61
808 809 0.823460 CAGCAAACAAACCACACCCT 59.177 50.000 0.00 0.00 0.00 4.34
863 868 2.743928 GCAACACCTCGCCTCCTG 60.744 66.667 0.00 0.00 0.00 3.86
868 873 1.376037 CACCTCGCCTCCTGTTTCC 60.376 63.158 0.00 0.00 0.00 3.13
869 874 1.841556 ACCTCGCCTCCTGTTTCCA 60.842 57.895 0.00 0.00 0.00 3.53
1172 1177 2.173669 CCGGGTATCTGCACAAGCG 61.174 63.158 0.00 0.00 46.23 4.68
1248 1253 2.885861 CACTACTCCGCCTCGCTT 59.114 61.111 0.00 0.00 0.00 4.68
1359 1364 3.482783 GACGCGCACAAGGAGCTC 61.483 66.667 5.73 4.71 40.54 4.09
1428 1433 2.660552 AACGTGCGGGTTGACTCG 60.661 61.111 0.00 0.00 0.00 4.18
1434 1439 2.126580 CGGGTTGACTCGTCCGAC 60.127 66.667 0.00 0.00 44.69 4.79
1435 1440 2.623915 CGGGTTGACTCGTCCGACT 61.624 63.158 0.00 0.00 44.69 4.18
1479 1484 1.065126 CCGAGGAAGAGGAAAGCCATT 60.065 52.381 0.00 0.00 36.29 3.16
1548 1553 0.622665 CCAAGGAGTTGCTGGATCCT 59.377 55.000 14.23 0.00 45.50 3.24
1550 1555 0.034670 AAGGAGTTGCTGGATCCTGC 60.035 55.000 30.90 30.90 42.72 4.85
1551 1556 1.203441 AGGAGTTGCTGGATCCTGCA 61.203 55.000 34.87 34.87 46.39 4.41
1578 1595 1.953353 CTGCTGCAACGCGAGAGAAG 61.953 60.000 15.93 7.00 0.00 2.85
1707 1724 2.440569 GCTCTTGCGTCGCACTCTC 61.441 63.158 21.61 6.19 38.71 3.20
1708 1725 1.803519 CTCTTGCGTCGCACTCTCC 60.804 63.158 21.61 0.00 38.71 3.71
1746 1763 2.030893 CGCAGCAAAGTTTGATTCCTCA 60.031 45.455 19.82 0.00 0.00 3.86
1858 1875 0.326238 TACCCCAGATGACCCCAGTC 60.326 60.000 0.00 0.00 43.83 3.51
1932 1949 6.980593 AGTACTATCTATGAAGAAGCAGCTG 58.019 40.000 10.11 10.11 34.73 4.24
1943 1960 1.061711 GAAGCAGCTGCATGTCTTACG 59.938 52.381 38.24 0.00 45.16 3.18
2020 2037 2.602738 CAGGACTGCATCAGATCGC 58.397 57.895 0.29 0.00 35.18 4.58
2039 2056 0.034059 CTGAGGGTTGACGAGTTGCT 59.966 55.000 0.00 0.00 0.00 3.91
2040 2057 0.033504 TGAGGGTTGACGAGTTGCTC 59.966 55.000 0.00 0.00 0.00 4.26
2052 2069 2.034254 CGAGTTGCTCGCACATTATCAG 60.034 50.000 5.60 0.00 46.75 2.90
2070 2087 0.820871 AGAGGATCGACAAGTCTGCC 59.179 55.000 0.00 0.00 42.67 4.85
2083 2100 3.275617 AGTCTGCCGCAAATACCATAA 57.724 42.857 0.00 0.00 0.00 1.90
2094 2111 5.649557 GCAAATACCATAACTGATGTGCAA 58.350 37.500 0.00 0.00 34.34 4.08
2098 2115 1.202177 CCATAACTGATGTGCAACGCC 60.202 52.381 0.00 0.00 42.39 5.68
2108 2125 2.017782 TGTGCAACGCCTTGTTAAGAA 58.982 42.857 0.00 0.00 42.39 2.52
2113 2130 1.961793 ACGCCTTGTTAAGAAGCACA 58.038 45.000 6.84 0.00 0.00 4.57
2117 2134 3.304659 CGCCTTGTTAAGAAGCACAATGT 60.305 43.478 6.84 0.00 32.50 2.71
2152 2169 1.403647 CGTGCCCTCATTCGAGTTGTA 60.404 52.381 0.00 0.00 37.59 2.41
2175 2192 1.613925 GCCAAGAAGTTTCTGAACCCC 59.386 52.381 0.00 0.00 37.65 4.95
2179 2196 2.136026 AGAAGTTTCTGAACCCCCACT 58.864 47.619 0.00 0.00 35.89 4.00
2184 2201 1.518367 TTCTGAACCCCCACTCACTT 58.482 50.000 0.00 0.00 0.00 3.16
2250 2267 3.421844 ACTTCAGGCAATGTTAGGAACC 58.578 45.455 0.00 0.00 0.00 3.62
2352 2369 2.159572 CGTTTTCCGCTTACCAAGGATG 60.160 50.000 0.00 0.00 33.57 3.51
2407 2424 4.090761 TCTGTTGGAATTGAAGCAGAGT 57.909 40.909 0.88 0.00 0.00 3.24
2462 2479 1.382692 GCTTTGCAGATCCTGGAGGC 61.383 60.000 1.52 6.69 32.58 4.70
2476 2493 2.751806 CTGGAGGCCATGAAAGAGAAAC 59.248 50.000 5.01 0.00 30.82 2.78
2508 2525 2.028130 CCGGAAGAGTCATCTAGCACT 58.972 52.381 0.00 0.00 33.45 4.40
2516 2533 3.699038 GAGTCATCTAGCACTGAGGTCTT 59.301 47.826 0.00 0.00 0.00 3.01
2550 2567 5.120830 ACTCGATTCAGTTTAGCATGTGTTC 59.879 40.000 0.00 0.00 0.00 3.18
2622 2639 2.874014 TGGTTGATCATGCAGTTTGGA 58.126 42.857 0.00 0.00 0.00 3.53
2758 2775 1.487976 TGGAATGCTTGGCTCCTCTAG 59.512 52.381 0.00 0.00 0.00 2.43
2774 2791 7.232941 GGCTCCTCTAGTTATACCATCTGTTTA 59.767 40.741 0.00 0.00 0.00 2.01
2799 2816 8.251383 ACTCCACTACTTATATGTGTGCTAAT 57.749 34.615 1.63 0.00 0.00 1.73
2855 2872 5.374071 AGATATTGCTCATGCTGTGAATGA 58.626 37.500 0.00 0.00 40.48 2.57
3087 3104 7.775053 AGGCCAAATTTCTTACAGACATTAA 57.225 32.000 5.01 0.00 0.00 1.40
3130 3147 2.303890 AGGCTGACACATGTGAAGATGA 59.696 45.455 31.94 2.86 0.00 2.92
3160 3177 3.929002 TGCAGGATTGGCAGATGC 58.071 55.556 0.00 0.00 36.11 3.91
3203 3220 5.161358 GGTAACTGCAATTCTTTTACCAGC 58.839 41.667 4.33 0.00 40.91 4.85
3204 3221 4.935352 AACTGCAATTCTTTTACCAGCA 57.065 36.364 0.00 0.00 0.00 4.41
3205 3222 4.243007 ACTGCAATTCTTTTACCAGCAC 57.757 40.909 0.00 0.00 0.00 4.40
3206 3223 3.636300 ACTGCAATTCTTTTACCAGCACA 59.364 39.130 0.00 0.00 0.00 4.57
3207 3224 4.099266 ACTGCAATTCTTTTACCAGCACAA 59.901 37.500 0.00 0.00 0.00 3.33
3208 3225 4.619973 TGCAATTCTTTTACCAGCACAAG 58.380 39.130 0.00 0.00 0.00 3.16
3209 3226 3.989817 GCAATTCTTTTACCAGCACAAGG 59.010 43.478 0.00 0.00 0.00 3.61
3210 3227 3.942130 ATTCTTTTACCAGCACAAGGC 57.058 42.857 0.00 0.00 45.30 4.35
3243 3260 5.765182 ACCATCCTTTGTTGTTTCTACTGAG 59.235 40.000 0.00 0.00 0.00 3.35
3251 3268 7.482654 TTGTTGTTTCTACTGAGACAAGATG 57.517 36.000 3.01 0.00 44.41 2.90
3374 3392 5.604758 ATTATGCTACTGTTGCTCTCTCA 57.395 39.130 14.81 0.00 0.00 3.27
3390 3408 5.767665 GCTCTCTCAGAGTAGAATGGTGATA 59.232 44.000 0.36 0.00 44.12 2.15
3429 3447 4.248859 GCTGTTCAGAGTAGAATTGCTCA 58.751 43.478 3.84 0.00 38.39 4.26
3462 3480 5.245531 AGATTGCAGTTTCGATGTCCTTTA 58.754 37.500 0.00 0.00 0.00 1.85
3800 3881 4.766404 AAGGTATTTTTCTGCAGGAACG 57.234 40.909 15.13 0.00 33.13 3.95
3814 3895 7.840931 TCTGCAGGAACGTATATCATATGAAT 58.159 34.615 15.13 7.44 0.00 2.57
3855 3936 4.798882 TGTTTGGAGGGTCACAAGTTTAT 58.201 39.130 0.00 0.00 0.00 1.40
3966 4047 8.303876 GGTACTTTTGATTTTCCTTGCAGAATA 58.696 33.333 0.00 0.00 0.00 1.75
4031 4112 1.205417 AGCTACAAACAATGCATGGGC 59.795 47.619 5.94 0.00 41.68 5.36
4055 4136 7.201902 GGCAATATGTTGATGTGGAATTTCCTA 60.202 37.037 16.25 6.25 35.98 2.94
4073 4154 5.767816 TCCTAAAAGGAAAACAGCTTGAC 57.232 39.130 0.00 0.00 42.51 3.18
4220 4301 0.988678 GCAGGGAGGGTTGGACCTAT 60.989 60.000 0.00 0.00 42.10 2.57
4247 4328 8.950210 GGTATCATAAATGATCATGGTCGATTT 58.050 33.333 9.46 15.81 43.72 2.17
4260 4341 4.441792 TGGTCGATTTGAGTACCATCATG 58.558 43.478 0.00 0.00 37.09 3.07
4289 4370 6.932356 ATGCGATACATGACAGAAGAAAAT 57.068 33.333 0.00 0.00 37.70 1.82
4310 4391 4.868172 TGAGATGATGTTGGATTTCCCT 57.132 40.909 0.00 0.00 35.38 4.20
4314 4395 3.824001 TGATGTTGGATTTCCCTGGAA 57.176 42.857 0.00 0.00 35.38 3.53
4316 4397 3.831911 TGATGTTGGATTTCCCTGGAAAC 59.168 43.478 13.33 7.81 45.34 2.78
4329 4410 2.420022 CCTGGAAACTATGCGAACTTGG 59.580 50.000 0.00 0.00 0.00 3.61
4366 4447 0.796312 AAGATGCAACTTGGCGTACG 59.204 50.000 11.84 11.84 36.28 3.67
4391 4472 4.019174 CCATTCAGTGGGCTATCAAAGTT 58.981 43.478 0.00 0.00 44.79 2.66
4556 4637 4.065088 CCTACATGGATTGGTTGGTATCG 58.935 47.826 0.00 0.00 38.35 2.92
4639 4720 5.170021 GCTCAGATATCCTGCTGACTTATG 58.830 45.833 0.00 0.00 42.62 1.90
4697 4778 2.289506 TGCTGAGGATGCTATGAGATGC 60.290 50.000 0.00 0.00 0.00 3.91
4720 4801 7.732025 TGCCTCTTGATTTATCCTTATAACGA 58.268 34.615 0.00 0.00 0.00 3.85
4734 4815 0.035820 TAACGACATCCCAAGGCCAC 60.036 55.000 5.01 0.00 0.00 5.01
4735 4816 2.063015 AACGACATCCCAAGGCCACA 62.063 55.000 5.01 0.00 0.00 4.17
4745 4826 2.883828 AAGGCCACAGTGGGAGACG 61.884 63.158 21.77 0.00 38.19 4.18
4749 4830 4.662961 CACAGTGGGAGACGCGCA 62.663 66.667 5.73 0.00 37.07 6.09
4787 4868 2.028190 CCACTGGATAGAGGCGCG 59.972 66.667 0.00 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.309296 ACAACTTGGAGTCTCTGGAAGA 58.691 45.455 0.00 0.00 43.69 2.87
1 2 3.760580 ACAACTTGGAGTCTCTGGAAG 57.239 47.619 0.00 3.07 0.00 3.46
2 3 5.566826 CGAATACAACTTGGAGTCTCTGGAA 60.567 44.000 0.00 0.00 0.00 3.53
3 4 4.082190 CGAATACAACTTGGAGTCTCTGGA 60.082 45.833 0.00 0.00 0.00 3.86
4 5 4.177026 CGAATACAACTTGGAGTCTCTGG 58.823 47.826 0.00 0.00 0.00 3.86
5 6 3.614616 GCGAATACAACTTGGAGTCTCTG 59.385 47.826 0.00 0.00 0.00 3.35
6 7 3.511934 AGCGAATACAACTTGGAGTCTCT 59.488 43.478 0.00 0.00 0.00 3.10
7 8 3.614616 CAGCGAATACAACTTGGAGTCTC 59.385 47.826 0.19 0.00 0.00 3.36
8 9 3.589988 CAGCGAATACAACTTGGAGTCT 58.410 45.455 0.19 0.00 0.00 3.24
9 10 2.673368 CCAGCGAATACAACTTGGAGTC 59.327 50.000 0.00 0.00 0.00 3.36
10 11 2.038557 ACCAGCGAATACAACTTGGAGT 59.961 45.455 0.00 0.00 0.00 3.85
11 12 2.416547 CACCAGCGAATACAACTTGGAG 59.583 50.000 0.00 0.00 0.00 3.86
12 13 2.422597 CACCAGCGAATACAACTTGGA 58.577 47.619 0.00 0.00 0.00 3.53
13 14 1.468520 CCACCAGCGAATACAACTTGG 59.531 52.381 0.00 0.00 0.00 3.61
14 15 2.151202 ACCACCAGCGAATACAACTTG 58.849 47.619 0.00 0.00 0.00 3.16
15 16 2.561478 ACCACCAGCGAATACAACTT 57.439 45.000 0.00 0.00 0.00 2.66
16 17 2.565834 AGTACCACCAGCGAATACAACT 59.434 45.455 0.00 0.00 0.00 3.16
17 18 2.968675 AGTACCACCAGCGAATACAAC 58.031 47.619 0.00 0.00 0.00 3.32
18 19 3.331150 CAAGTACCACCAGCGAATACAA 58.669 45.455 0.00 0.00 0.00 2.41
19 20 2.354303 CCAAGTACCACCAGCGAATACA 60.354 50.000 0.00 0.00 0.00 2.29
20 21 2.277084 CCAAGTACCACCAGCGAATAC 58.723 52.381 0.00 0.00 0.00 1.89
21 22 1.406341 GCCAAGTACCACCAGCGAATA 60.406 52.381 0.00 0.00 0.00 1.75
22 23 0.676782 GCCAAGTACCACCAGCGAAT 60.677 55.000 0.00 0.00 0.00 3.34
23 24 1.302192 GCCAAGTACCACCAGCGAA 60.302 57.895 0.00 0.00 0.00 4.70
24 25 2.345991 GCCAAGTACCACCAGCGA 59.654 61.111 0.00 0.00 0.00 4.93
25 26 3.118454 CGCCAAGTACCACCAGCG 61.118 66.667 0.00 0.00 37.39 5.18
26 27 2.746277 CCGCCAAGTACCACCAGC 60.746 66.667 0.00 0.00 0.00 4.85
27 28 2.746277 GCCGCCAAGTACCACCAG 60.746 66.667 0.00 0.00 0.00 4.00
28 29 2.901281 ATGCCGCCAAGTACCACCA 61.901 57.895 0.00 0.00 0.00 4.17
29 30 2.045340 ATGCCGCCAAGTACCACC 60.045 61.111 0.00 0.00 0.00 4.61
30 31 2.406616 CCATGCCGCCAAGTACCAC 61.407 63.158 0.00 0.00 0.00 4.16
31 32 1.554583 TACCATGCCGCCAAGTACCA 61.555 55.000 0.00 0.00 0.00 3.25
32 33 1.093496 GTACCATGCCGCCAAGTACC 61.093 60.000 0.15 0.00 32.68 3.34
33 34 0.107848 AGTACCATGCCGCCAAGTAC 60.108 55.000 2.84 2.84 36.11 2.73
34 35 0.107897 CAGTACCATGCCGCCAAGTA 60.108 55.000 0.00 0.00 0.00 2.24
35 36 1.377202 CAGTACCATGCCGCCAAGT 60.377 57.895 0.00 0.00 0.00 3.16
36 37 2.764314 GCAGTACCATGCCGCCAAG 61.764 63.158 0.00 0.00 40.43 3.61
37 38 2.749839 GCAGTACCATGCCGCCAA 60.750 61.111 0.00 0.00 40.43 4.52
41 42 2.566057 TACACCGCAGTACCATGCCG 62.566 60.000 1.83 0.00 43.49 5.69
42 43 1.087771 GTACACCGCAGTACCATGCC 61.088 60.000 1.83 0.00 43.49 4.40
43 44 2.380081 GTACACCGCAGTACCATGC 58.620 57.895 4.77 0.00 42.95 4.06
72 73 3.092519 CAGACTTCTGAGCACGTTGCG 62.093 57.143 0.00 0.00 46.59 4.85
73 74 0.510359 CAGACTTCTGAGCACGTTGC 59.490 55.000 0.00 2.28 46.59 4.17
74 75 0.510359 GCAGACTTCTGAGCACGTTG 59.490 55.000 10.54 0.00 46.59 4.10
75 76 0.104855 TGCAGACTTCTGAGCACGTT 59.895 50.000 10.54 0.00 46.59 3.99
76 77 0.598680 GTGCAGACTTCTGAGCACGT 60.599 55.000 10.54 0.00 46.35 4.49
77 78 2.148687 GTGCAGACTTCTGAGCACG 58.851 57.895 10.54 0.00 46.35 5.34
79 80 0.958822 TACGTGCAGACTTCTGAGCA 59.041 50.000 10.54 0.00 46.59 4.26
80 81 1.623359 CTACGTGCAGACTTCTGAGC 58.377 55.000 10.54 1.04 46.59 4.26
81 82 1.201181 AGCTACGTGCAGACTTCTGAG 59.799 52.381 10.54 3.30 46.59 3.35
82 83 1.248486 AGCTACGTGCAGACTTCTGA 58.752 50.000 10.54 0.00 46.59 3.27
83 84 2.478709 CCTAGCTACGTGCAGACTTCTG 60.479 54.545 0.00 1.56 45.94 3.02
84 85 1.746220 CCTAGCTACGTGCAGACTTCT 59.254 52.381 0.00 0.00 45.94 2.85
85 86 1.202313 CCCTAGCTACGTGCAGACTTC 60.202 57.143 0.00 0.00 45.94 3.01
86 87 0.818296 CCCTAGCTACGTGCAGACTT 59.182 55.000 0.00 0.00 45.94 3.01
87 88 0.034380 TCCCTAGCTACGTGCAGACT 60.034 55.000 0.00 0.00 45.94 3.24
88 89 0.382515 CTCCCTAGCTACGTGCAGAC 59.617 60.000 0.00 0.00 45.94 3.51
89 90 1.384989 GCTCCCTAGCTACGTGCAGA 61.385 60.000 0.00 0.00 45.85 4.26
90 91 1.066587 GCTCCCTAGCTACGTGCAG 59.933 63.158 0.00 0.00 45.85 4.41
91 92 3.207354 GCTCCCTAGCTACGTGCA 58.793 61.111 0.00 0.00 45.85 4.57
100 101 0.108615 CAACGACACCAGCTCCCTAG 60.109 60.000 0.00 0.00 0.00 3.02
101 102 0.830444 ACAACGACACCAGCTCCCTA 60.830 55.000 0.00 0.00 0.00 3.53
102 103 2.140792 ACAACGACACCAGCTCCCT 61.141 57.895 0.00 0.00 0.00 4.20
103 104 1.961277 CACAACGACACCAGCTCCC 60.961 63.158 0.00 0.00 0.00 4.30
104 105 2.607892 GCACAACGACACCAGCTCC 61.608 63.158 0.00 0.00 0.00 4.70
105 106 2.939022 GCACAACGACACCAGCTC 59.061 61.111 0.00 0.00 0.00 4.09
124 125 4.953868 TCCGTCAACGCCACCACG 62.954 66.667 0.00 0.00 38.18 4.94
125 126 2.358247 ATCCGTCAACGCCACCAC 60.358 61.111 0.00 0.00 38.18 4.16
126 127 2.358125 CATCCGTCAACGCCACCA 60.358 61.111 0.00 0.00 38.18 4.17
127 128 3.124921 CCATCCGTCAACGCCACC 61.125 66.667 0.00 0.00 38.18 4.61
128 129 3.799755 GCCATCCGTCAACGCCAC 61.800 66.667 0.00 0.00 38.18 5.01
139 140 1.146263 CTTACCAGTCCGGCCATCC 59.854 63.158 2.24 0.00 39.03 3.51
140 141 1.146263 CCTTACCAGTCCGGCCATC 59.854 63.158 2.24 0.00 39.03 3.51
141 142 0.694444 ATCCTTACCAGTCCGGCCAT 60.694 55.000 2.24 0.00 39.03 4.40
142 143 1.306654 ATCCTTACCAGTCCGGCCA 60.307 57.895 2.24 0.00 39.03 5.36
143 144 1.146263 CATCCTTACCAGTCCGGCC 59.854 63.158 0.00 0.00 39.03 6.13
144 145 0.759346 ATCATCCTTACCAGTCCGGC 59.241 55.000 0.00 0.00 39.03 6.13
145 146 1.541233 GCATCATCCTTACCAGTCCGG 60.541 57.143 0.00 0.00 42.50 5.14
146 147 1.869754 CGCATCATCCTTACCAGTCCG 60.870 57.143 0.00 0.00 0.00 4.79
147 148 1.541233 CCGCATCATCCTTACCAGTCC 60.541 57.143 0.00 0.00 0.00 3.85
148 149 1.412710 TCCGCATCATCCTTACCAGTC 59.587 52.381 0.00 0.00 0.00 3.51
149 150 1.496060 TCCGCATCATCCTTACCAGT 58.504 50.000 0.00 0.00 0.00 4.00
150 151 2.301296 AGATCCGCATCATCCTTACCAG 59.699 50.000 0.00 0.00 0.00 4.00
151 152 2.300152 GAGATCCGCATCATCCTTACCA 59.700 50.000 0.00 0.00 0.00 3.25
152 153 2.564947 AGAGATCCGCATCATCCTTACC 59.435 50.000 0.00 0.00 0.00 2.85
153 154 3.951775 AGAGATCCGCATCATCCTTAC 57.048 47.619 0.00 0.00 0.00 2.34
154 155 4.262635 GGAAAGAGATCCGCATCATCCTTA 60.263 45.833 0.00 0.00 0.00 2.69
155 156 3.495806 GGAAAGAGATCCGCATCATCCTT 60.496 47.826 0.00 0.00 0.00 3.36
156 157 2.038295 GGAAAGAGATCCGCATCATCCT 59.962 50.000 0.00 0.00 0.00 3.24
157 158 2.038295 AGGAAAGAGATCCGCATCATCC 59.962 50.000 0.00 0.00 44.60 3.51
158 159 3.065655 CAGGAAAGAGATCCGCATCATC 58.934 50.000 0.00 0.00 44.60 2.92
159 160 2.702478 TCAGGAAAGAGATCCGCATCAT 59.298 45.455 0.00 0.00 44.60 2.45
160 161 2.110578 TCAGGAAAGAGATCCGCATCA 58.889 47.619 0.00 0.00 44.60 3.07
161 162 2.898729 TCAGGAAAGAGATCCGCATC 57.101 50.000 0.00 0.00 44.60 3.91
162 163 2.768527 TCTTCAGGAAAGAGATCCGCAT 59.231 45.455 0.00 0.00 44.60 4.73
163 164 2.179427 TCTTCAGGAAAGAGATCCGCA 58.821 47.619 0.00 0.00 44.60 5.69
164 165 2.969628 TCTTCAGGAAAGAGATCCGC 57.030 50.000 0.00 0.00 44.60 5.54
165 166 4.099266 ACTCATCTTCAGGAAAGAGATCCG 59.901 45.833 10.74 0.00 46.95 4.18
166 167 5.358922 CACTCATCTTCAGGAAAGAGATCC 58.641 45.833 10.74 0.00 46.95 3.36
167 168 4.810491 GCACTCATCTTCAGGAAAGAGATC 59.190 45.833 10.74 0.00 46.95 2.75
168 169 4.680172 CGCACTCATCTTCAGGAAAGAGAT 60.680 45.833 10.74 0.00 46.95 2.75
169 170 3.367806 CGCACTCATCTTCAGGAAAGAGA 60.368 47.826 10.74 0.00 46.95 3.10
170 171 2.928757 CGCACTCATCTTCAGGAAAGAG 59.071 50.000 0.00 0.00 46.95 2.85
172 173 2.964740 TCGCACTCATCTTCAGGAAAG 58.035 47.619 0.00 0.00 36.22 2.62
173 174 3.616956 ATCGCACTCATCTTCAGGAAA 57.383 42.857 0.00 0.00 0.00 3.13
174 175 3.525537 GAATCGCACTCATCTTCAGGAA 58.474 45.455 0.00 0.00 0.00 3.36
175 176 2.480244 CGAATCGCACTCATCTTCAGGA 60.480 50.000 0.00 0.00 0.00 3.86
176 177 1.857217 CGAATCGCACTCATCTTCAGG 59.143 52.381 0.00 0.00 0.00 3.86
177 178 2.802256 TCGAATCGCACTCATCTTCAG 58.198 47.619 0.00 0.00 0.00 3.02
178 179 2.939460 TCGAATCGCACTCATCTTCA 57.061 45.000 0.00 0.00 0.00 3.02
179 180 3.375642 TCATCGAATCGCACTCATCTTC 58.624 45.455 0.00 0.00 0.00 2.87
180 181 3.443099 TCATCGAATCGCACTCATCTT 57.557 42.857 0.00 0.00 0.00 2.40
181 182 3.005155 TCATCATCGAATCGCACTCATCT 59.995 43.478 0.00 0.00 0.00 2.90
182 183 3.311966 TCATCATCGAATCGCACTCATC 58.688 45.455 0.00 0.00 0.00 2.92
183 184 3.375782 TCATCATCGAATCGCACTCAT 57.624 42.857 0.00 0.00 0.00 2.90
184 185 2.869233 TCATCATCGAATCGCACTCA 57.131 45.000 0.00 0.00 0.00 3.41
185 186 2.411069 CCATCATCATCGAATCGCACTC 59.589 50.000 0.00 0.00 0.00 3.51
186 187 2.410939 CCATCATCATCGAATCGCACT 58.589 47.619 0.00 0.00 0.00 4.40
187 188 1.136141 GCCATCATCATCGAATCGCAC 60.136 52.381 0.00 0.00 0.00 5.34
188 189 1.150827 GCCATCATCATCGAATCGCA 58.849 50.000 0.00 0.00 0.00 5.10
189 190 1.150827 TGCCATCATCATCGAATCGC 58.849 50.000 0.00 0.00 0.00 4.58
190 191 2.804527 AGTTGCCATCATCATCGAATCG 59.195 45.455 0.00 0.00 0.00 3.34
191 192 4.514441 AGAAGTTGCCATCATCATCGAATC 59.486 41.667 0.00 0.00 0.00 2.52
192 193 4.458397 AGAAGTTGCCATCATCATCGAAT 58.542 39.130 0.00 0.00 0.00 3.34
193 194 3.877559 AGAAGTTGCCATCATCATCGAA 58.122 40.909 0.00 0.00 0.00 3.71
194 195 3.548745 AGAAGTTGCCATCATCATCGA 57.451 42.857 0.00 0.00 0.00 3.59
195 196 5.739752 TTTAGAAGTTGCCATCATCATCG 57.260 39.130 0.00 0.00 0.00 3.84
196 197 5.967674 CGTTTTAGAAGTTGCCATCATCATC 59.032 40.000 0.00 0.00 0.00 2.92
197 198 5.415701 ACGTTTTAGAAGTTGCCATCATCAT 59.584 36.000 0.00 0.00 0.00 2.45
198 199 4.759693 ACGTTTTAGAAGTTGCCATCATCA 59.240 37.500 0.00 0.00 0.00 3.07
199 200 5.088739 CACGTTTTAGAAGTTGCCATCATC 58.911 41.667 0.00 0.00 0.00 2.92
200 201 4.518970 ACACGTTTTAGAAGTTGCCATCAT 59.481 37.500 0.00 0.00 0.00 2.45
201 202 3.880490 ACACGTTTTAGAAGTTGCCATCA 59.120 39.130 0.00 0.00 0.00 3.07
202 203 4.219033 CACACGTTTTAGAAGTTGCCATC 58.781 43.478 0.00 0.00 0.00 3.51
203 204 3.550030 GCACACGTTTTAGAAGTTGCCAT 60.550 43.478 0.00 0.00 0.00 4.40
204 205 2.223386 GCACACGTTTTAGAAGTTGCCA 60.223 45.455 0.00 0.00 0.00 4.92
205 206 2.223386 TGCACACGTTTTAGAAGTTGCC 60.223 45.455 0.00 0.00 0.00 4.52
206 207 3.059634 TGCACACGTTTTAGAAGTTGC 57.940 42.857 0.00 0.00 0.00 4.17
207 208 4.437495 CACATGCACACGTTTTAGAAGTTG 59.563 41.667 0.00 0.00 0.00 3.16
208 209 4.497340 CCACATGCACACGTTTTAGAAGTT 60.497 41.667 0.00 0.00 0.00 2.66
209 210 3.003275 CCACATGCACACGTTTTAGAAGT 59.997 43.478 0.00 0.00 0.00 3.01
210 211 3.003275 ACCACATGCACACGTTTTAGAAG 59.997 43.478 0.00 0.00 0.00 2.85
211 212 2.946329 ACCACATGCACACGTTTTAGAA 59.054 40.909 0.00 0.00 0.00 2.10
212 213 2.289274 CACCACATGCACACGTTTTAGA 59.711 45.455 0.00 0.00 0.00 2.10
213 214 2.032799 ACACCACATGCACACGTTTTAG 59.967 45.455 0.00 0.00 0.00 1.85
214 215 2.017782 ACACCACATGCACACGTTTTA 58.982 42.857 0.00 0.00 0.00 1.52
215 216 0.814457 ACACCACATGCACACGTTTT 59.186 45.000 0.00 0.00 0.00 2.43
216 217 1.332375 GTACACCACATGCACACGTTT 59.668 47.619 0.00 0.00 0.00 3.60
217 218 0.941542 GTACACCACATGCACACGTT 59.058 50.000 0.00 0.00 0.00 3.99
218 219 1.218875 CGTACACCACATGCACACGT 61.219 55.000 0.00 0.00 30.64 4.49
219 220 1.491127 CGTACACCACATGCACACG 59.509 57.895 0.00 0.00 0.00 4.49
220 221 1.206578 GCGTACACCACATGCACAC 59.793 57.895 0.00 0.00 0.00 3.82
221 222 0.533978 AAGCGTACACCACATGCACA 60.534 50.000 0.00 0.00 0.00 4.57
222 223 0.591170 AAAGCGTACACCACATGCAC 59.409 50.000 0.00 0.00 0.00 4.57
223 224 2.073056 CTAAAGCGTACACCACATGCA 58.927 47.619 0.00 0.00 0.00 3.96
224 225 1.396996 CCTAAAGCGTACACCACATGC 59.603 52.381 0.00 0.00 0.00 4.06
225 226 2.695359 ACCTAAAGCGTACACCACATG 58.305 47.619 0.00 0.00 0.00 3.21
226 227 3.412237 AACCTAAAGCGTACACCACAT 57.588 42.857 0.00 0.00 0.00 3.21
227 228 2.873472 CAAACCTAAAGCGTACACCACA 59.127 45.455 0.00 0.00 0.00 4.17
228 229 2.350102 GCAAACCTAAAGCGTACACCAC 60.350 50.000 0.00 0.00 0.00 4.16
229 230 1.874872 GCAAACCTAAAGCGTACACCA 59.125 47.619 0.00 0.00 0.00 4.17
230 231 2.095919 CAGCAAACCTAAAGCGTACACC 60.096 50.000 0.00 0.00 0.00 4.16
231 232 2.664698 GCAGCAAACCTAAAGCGTACAC 60.665 50.000 0.00 0.00 0.00 2.90
232 233 1.533731 GCAGCAAACCTAAAGCGTACA 59.466 47.619 0.00 0.00 0.00 2.90
233 234 1.533731 TGCAGCAAACCTAAAGCGTAC 59.466 47.619 0.00 0.00 0.00 3.67
234 235 1.885560 TGCAGCAAACCTAAAGCGTA 58.114 45.000 0.00 0.00 0.00 4.42
235 236 1.200020 GATGCAGCAAACCTAAAGCGT 59.800 47.619 0.00 0.00 0.00 5.07
236 237 1.791555 CGATGCAGCAAACCTAAAGCG 60.792 52.381 1.53 0.00 0.00 4.68
237 238 1.468054 CCGATGCAGCAAACCTAAAGC 60.468 52.381 1.53 0.00 0.00 3.51
238 239 1.133025 CCCGATGCAGCAAACCTAAAG 59.867 52.381 1.53 0.00 0.00 1.85
239 240 1.173043 CCCGATGCAGCAAACCTAAA 58.827 50.000 1.53 0.00 0.00 1.85
240 241 0.037590 ACCCGATGCAGCAAACCTAA 59.962 50.000 1.53 0.00 0.00 2.69
241 242 0.676466 CACCCGATGCAGCAAACCTA 60.676 55.000 1.53 0.00 0.00 3.08
242 243 1.973281 CACCCGATGCAGCAAACCT 60.973 57.895 1.53 0.00 0.00 3.50
243 244 1.805428 AACACCCGATGCAGCAAACC 61.805 55.000 1.53 0.00 0.00 3.27
244 245 0.664166 CAACACCCGATGCAGCAAAC 60.664 55.000 1.53 0.00 0.00 2.93
245 246 1.659233 CAACACCCGATGCAGCAAA 59.341 52.632 1.53 0.00 0.00 3.68
246 247 2.267351 CCAACACCCGATGCAGCAA 61.267 57.895 1.53 0.00 0.00 3.91
247 248 2.672651 CCAACACCCGATGCAGCA 60.673 61.111 1.53 0.00 0.00 4.41
248 249 2.200170 GAACCAACACCCGATGCAGC 62.200 60.000 0.00 0.00 0.00 5.25
249 250 1.586154 GGAACCAACACCCGATGCAG 61.586 60.000 0.00 0.00 0.00 4.41
250 251 1.602323 GGAACCAACACCCGATGCA 60.602 57.895 0.00 0.00 0.00 3.96
251 252 2.686816 CGGAACCAACACCCGATGC 61.687 63.158 0.00 0.00 45.58 3.91
252 253 1.004320 TCGGAACCAACACCCGATG 60.004 57.895 0.00 0.00 46.17 3.84
253 254 3.474000 TCGGAACCAACACCCGAT 58.526 55.556 0.00 0.00 46.17 4.18
255 256 2.109387 TGTCGGAACCAACACCCG 59.891 61.111 0.00 0.00 44.22 5.28
256 257 2.248835 CGTGTCGGAACCAACACCC 61.249 63.158 9.11 0.00 42.18 4.61
257 258 1.091197 AACGTGTCGGAACCAACACC 61.091 55.000 9.11 0.00 42.18 4.16
258 259 1.569708 TAACGTGTCGGAACCAACAC 58.430 50.000 5.12 5.12 41.84 3.32
259 260 2.136728 CATAACGTGTCGGAACCAACA 58.863 47.619 0.00 0.00 0.00 3.33
260 261 1.136169 GCATAACGTGTCGGAACCAAC 60.136 52.381 0.00 0.00 0.00 3.77
261 262 1.149987 GCATAACGTGTCGGAACCAA 58.850 50.000 0.00 0.00 0.00 3.67
262 263 1.009903 CGCATAACGTGTCGGAACCA 61.010 55.000 0.00 0.00 36.87 3.67
263 264 1.689352 CCGCATAACGTGTCGGAACC 61.689 60.000 11.12 0.00 44.74 3.62
264 265 0.733566 TCCGCATAACGTGTCGGAAC 60.734 55.000 15.24 0.00 46.21 3.62
265 266 1.585517 TCCGCATAACGTGTCGGAA 59.414 52.632 15.24 3.45 46.21 4.30
266 267 3.276109 TCCGCATAACGTGTCGGA 58.724 55.556 14.09 14.09 46.65 4.55
267 268 1.487452 CCATCCGCATAACGTGTCGG 61.487 60.000 10.53 10.53 43.93 4.79
268 269 0.526739 TCCATCCGCATAACGTGTCG 60.527 55.000 0.00 0.00 41.42 4.35
269 270 1.792949 GATCCATCCGCATAACGTGTC 59.207 52.381 0.00 0.00 41.42 3.67
270 271 1.865865 GATCCATCCGCATAACGTGT 58.134 50.000 0.00 0.00 41.42 4.49
271 272 0.784178 CGATCCATCCGCATAACGTG 59.216 55.000 0.00 0.00 41.42 4.49
272 273 0.319555 CCGATCCATCCGCATAACGT 60.320 55.000 0.00 0.00 41.42 3.99
273 274 1.626654 GCCGATCCATCCGCATAACG 61.627 60.000 0.00 0.00 43.15 3.18
274 275 1.626654 CGCCGATCCATCCGCATAAC 61.627 60.000 1.66 0.00 31.83 1.89
275 276 1.374125 CGCCGATCCATCCGCATAA 60.374 57.895 1.66 0.00 31.83 1.90
276 277 2.261361 CGCCGATCCATCCGCATA 59.739 61.111 1.66 0.00 31.83 3.14
277 278 3.615709 TCGCCGATCCATCCGCAT 61.616 61.111 0.00 0.00 31.83 4.73
278 279 4.585526 GTCGCCGATCCATCCGCA 62.586 66.667 0.00 0.00 31.83 5.69
280 281 3.961197 TCGTCGCCGATCCATCCG 61.961 66.667 0.00 0.00 38.40 4.18
281 282 2.354773 GTCGTCGCCGATCCATCC 60.355 66.667 0.00 0.00 46.30 3.51
282 283 1.944676 GTGTCGTCGCCGATCCATC 60.945 63.158 0.00 0.00 46.30 3.51
283 284 2.104331 GTGTCGTCGCCGATCCAT 59.896 61.111 0.00 0.00 46.30 3.41
284 285 4.124351 GGTGTCGTCGCCGATCCA 62.124 66.667 0.00 0.00 46.30 3.41
290 291 1.620413 CTAAAACCGGTGTCGTCGCC 61.620 60.000 8.52 1.83 40.52 5.54
291 292 0.664166 TCTAAAACCGGTGTCGTCGC 60.664 55.000 8.52 0.00 33.95 5.19
292 293 1.986698 ATCTAAAACCGGTGTCGTCG 58.013 50.000 8.52 0.00 33.95 5.12
293 294 4.675510 TCATATCTAAAACCGGTGTCGTC 58.324 43.478 8.52 0.00 33.95 4.20
294 295 4.441079 CCTCATATCTAAAACCGGTGTCGT 60.441 45.833 8.52 0.00 33.95 4.34
295 296 4.049186 CCTCATATCTAAAACCGGTGTCG 58.951 47.826 8.52 0.00 0.00 4.35
296 297 5.163437 ACTCCTCATATCTAAAACCGGTGTC 60.163 44.000 8.52 0.00 0.00 3.67
297 298 4.715297 ACTCCTCATATCTAAAACCGGTGT 59.285 41.667 8.52 0.00 0.00 4.16
298 299 5.050490 CACTCCTCATATCTAAAACCGGTG 58.950 45.833 8.52 0.00 0.00 4.94
299 300 4.960469 TCACTCCTCATATCTAAAACCGGT 59.040 41.667 0.00 0.00 0.00 5.28
300 301 5.302059 TCTCACTCCTCATATCTAAAACCGG 59.698 44.000 0.00 0.00 0.00 5.28
301 302 6.392625 TCTCACTCCTCATATCTAAAACCG 57.607 41.667 0.00 0.00 0.00 4.44
302 303 6.183360 TGCTCTCACTCCTCATATCTAAAACC 60.183 42.308 0.00 0.00 0.00 3.27
303 304 6.699642 GTGCTCTCACTCCTCATATCTAAAAC 59.300 42.308 0.00 0.00 40.03 2.43
304 305 6.810911 GTGCTCTCACTCCTCATATCTAAAA 58.189 40.000 0.00 0.00 40.03 1.52
305 306 6.398234 GTGCTCTCACTCCTCATATCTAAA 57.602 41.667 0.00 0.00 40.03 1.85
319 320 6.520272 ACTCAATAATATGGAGTGCTCTCAC 58.480 40.000 17.04 7.54 40.21 3.51
320 321 6.737720 ACTCAATAATATGGAGTGCTCTCA 57.262 37.500 17.04 4.55 40.21 3.27
321 322 7.497249 ACAAACTCAATAATATGGAGTGCTCTC 59.503 37.037 10.83 7.26 40.80 3.20
322 323 7.341805 ACAAACTCAATAATATGGAGTGCTCT 58.658 34.615 10.83 0.00 40.80 4.09
323 324 7.559590 ACAAACTCAATAATATGGAGTGCTC 57.440 36.000 10.83 0.00 40.80 4.26
324 325 7.716998 CCTACAAACTCAATAATATGGAGTGCT 59.283 37.037 10.83 0.00 40.80 4.40
325 326 7.499232 ACCTACAAACTCAATAATATGGAGTGC 59.501 37.037 10.83 0.00 40.80 4.40
326 327 8.830580 CACCTACAAACTCAATAATATGGAGTG 58.169 37.037 10.83 2.93 40.80 3.51
327 328 7.499232 GCACCTACAAACTCAATAATATGGAGT 59.501 37.037 4.49 4.49 43.35 3.85
328 329 7.307396 CGCACCTACAAACTCAATAATATGGAG 60.307 40.741 3.16 3.16 34.85 3.86
329 330 6.481976 CGCACCTACAAACTCAATAATATGGA 59.518 38.462 0.00 0.00 0.00 3.41
330 331 6.481976 TCGCACCTACAAACTCAATAATATGG 59.518 38.462 0.00 0.00 0.00 2.74
331 332 7.224753 ACTCGCACCTACAAACTCAATAATATG 59.775 37.037 0.00 0.00 0.00 1.78
332 333 7.224753 CACTCGCACCTACAAACTCAATAATAT 59.775 37.037 0.00 0.00 0.00 1.28
333 334 6.533723 CACTCGCACCTACAAACTCAATAATA 59.466 38.462 0.00 0.00 0.00 0.98
334 335 5.351465 CACTCGCACCTACAAACTCAATAAT 59.649 40.000 0.00 0.00 0.00 1.28
335 336 4.688879 CACTCGCACCTACAAACTCAATAA 59.311 41.667 0.00 0.00 0.00 1.40
336 337 4.242475 CACTCGCACCTACAAACTCAATA 58.758 43.478 0.00 0.00 0.00 1.90
337 338 3.067106 CACTCGCACCTACAAACTCAAT 58.933 45.455 0.00 0.00 0.00 2.57
338 339 2.479837 CACTCGCACCTACAAACTCAA 58.520 47.619 0.00 0.00 0.00 3.02
339 340 1.270094 CCACTCGCACCTACAAACTCA 60.270 52.381 0.00 0.00 0.00 3.41
340 341 1.270147 ACCACTCGCACCTACAAACTC 60.270 52.381 0.00 0.00 0.00 3.01
341 342 0.756903 ACCACTCGCACCTACAAACT 59.243 50.000 0.00 0.00 0.00 2.66
342 343 0.865769 CACCACTCGCACCTACAAAC 59.134 55.000 0.00 0.00 0.00 2.93
343 344 0.250124 CCACCACTCGCACCTACAAA 60.250 55.000 0.00 0.00 0.00 2.83
344 345 1.369692 CCACCACTCGCACCTACAA 59.630 57.895 0.00 0.00 0.00 2.41
345 346 3.056458 CCACCACTCGCACCTACA 58.944 61.111 0.00 0.00 0.00 2.74
346 347 2.434359 GCCACCACTCGCACCTAC 60.434 66.667 0.00 0.00 0.00 3.18
347 348 2.167398 GAAGCCACCACTCGCACCTA 62.167 60.000 0.00 0.00 0.00 3.08
348 349 3.537206 GAAGCCACCACTCGCACCT 62.537 63.158 0.00 0.00 0.00 4.00
349 350 3.050275 GAAGCCACCACTCGCACC 61.050 66.667 0.00 0.00 0.00 5.01
350 351 2.280797 TGAAGCCACCACTCGCAC 60.281 61.111 0.00 0.00 0.00 5.34
351 352 2.031012 CTGAAGCCACCACTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
352 353 2.743928 CCTGAAGCCACCACTCGC 60.744 66.667 0.00 0.00 0.00 5.03
353 354 1.669115 CACCTGAAGCCACCACTCG 60.669 63.158 0.00 0.00 0.00 4.18
354 355 1.302832 CCACCTGAAGCCACCACTC 60.303 63.158 0.00 0.00 0.00 3.51
355 356 2.839098 CCACCTGAAGCCACCACT 59.161 61.111 0.00 0.00 0.00 4.00
356 357 2.983725 AAGCCACCTGAAGCCACCAC 62.984 60.000 0.00 0.00 0.00 4.16
357 358 2.766925 AAGCCACCTGAAGCCACCA 61.767 57.895 0.00 0.00 0.00 4.17
358 359 2.116125 AAGCCACCTGAAGCCACC 59.884 61.111 0.00 0.00 0.00 4.61
359 360 0.610232 ATCAAGCCACCTGAAGCCAC 60.610 55.000 0.00 0.00 0.00 5.01
360 361 0.609957 CATCAAGCCACCTGAAGCCA 60.610 55.000 0.00 0.00 0.00 4.75
361 362 0.610232 ACATCAAGCCACCTGAAGCC 60.610 55.000 0.00 0.00 0.00 4.35
362 363 1.740025 GTACATCAAGCCACCTGAAGC 59.260 52.381 0.00 0.00 0.00 3.86
363 364 2.002586 CGTACATCAAGCCACCTGAAG 58.997 52.381 0.00 0.00 0.00 3.02
364 365 1.346395 ACGTACATCAAGCCACCTGAA 59.654 47.619 0.00 0.00 0.00 3.02
365 366 0.973632 ACGTACATCAAGCCACCTGA 59.026 50.000 0.00 0.00 0.00 3.86
366 367 1.732259 GAACGTACATCAAGCCACCTG 59.268 52.381 0.00 0.00 0.00 4.00
367 368 1.623811 AGAACGTACATCAAGCCACCT 59.376 47.619 0.00 0.00 0.00 4.00
368 369 2.094762 AGAACGTACATCAAGCCACC 57.905 50.000 0.00 0.00 0.00 4.61
369 370 2.806244 ACAAGAACGTACATCAAGCCAC 59.194 45.455 0.00 0.00 0.00 5.01
370 371 2.805671 CACAAGAACGTACATCAAGCCA 59.194 45.455 0.00 0.00 0.00 4.75
371 372 2.159627 CCACAAGAACGTACATCAAGCC 59.840 50.000 0.00 0.00 0.00 4.35
372 373 2.806244 ACCACAAGAACGTACATCAAGC 59.194 45.455 0.00 0.00 0.00 4.01
373 374 4.387862 GGTACCACAAGAACGTACATCAAG 59.612 45.833 7.15 0.00 35.18 3.02
374 375 4.039488 AGGTACCACAAGAACGTACATCAA 59.961 41.667 15.94 0.00 35.18 2.57
375 376 3.575256 AGGTACCACAAGAACGTACATCA 59.425 43.478 15.94 0.00 35.18 3.07
376 377 4.184079 AGGTACCACAAGAACGTACATC 57.816 45.455 15.94 0.00 35.18 3.06
377 378 4.612264 AAGGTACCACAAGAACGTACAT 57.388 40.909 15.94 0.00 35.18 2.29
378 379 4.121317 CAAAGGTACCACAAGAACGTACA 58.879 43.478 15.94 0.00 35.18 2.90
379 380 4.122046 ACAAAGGTACCACAAGAACGTAC 58.878 43.478 15.94 0.00 33.19 3.67
380 381 4.405116 ACAAAGGTACCACAAGAACGTA 57.595 40.909 15.94 0.00 0.00 3.57
381 382 3.271055 ACAAAGGTACCACAAGAACGT 57.729 42.857 15.94 0.00 0.00 3.99
382 383 3.623960 TCAACAAAGGTACCACAAGAACG 59.376 43.478 15.94 0.00 0.00 3.95
383 384 5.570234 TTCAACAAAGGTACCACAAGAAC 57.430 39.130 15.94 0.00 0.00 3.01
384 385 7.883391 TTATTCAACAAAGGTACCACAAGAA 57.117 32.000 15.94 10.39 0.00 2.52
385 386 8.472007 AATTATTCAACAAAGGTACCACAAGA 57.528 30.769 15.94 1.12 0.00 3.02
526 527 8.427276 TCAGTTCATTTCACTAGCATATCAGAT 58.573 33.333 0.00 0.00 0.00 2.90
527 528 7.708322 GTCAGTTCATTTCACTAGCATATCAGA 59.292 37.037 0.00 0.00 0.00 3.27
528 529 7.493645 TGTCAGTTCATTTCACTAGCATATCAG 59.506 37.037 0.00 0.00 0.00 2.90
529 530 7.330262 TGTCAGTTCATTTCACTAGCATATCA 58.670 34.615 0.00 0.00 0.00 2.15
530 531 7.776933 TGTCAGTTCATTTCACTAGCATATC 57.223 36.000 0.00 0.00 0.00 1.63
559 560 9.952188 GCTTCAGTACGAGCATATCATATTATA 57.048 33.333 12.18 0.00 0.00 0.98
560 561 8.690884 AGCTTCAGTACGAGCATATCATATTAT 58.309 33.333 17.23 0.00 0.00 1.28
561 562 8.056407 AGCTTCAGTACGAGCATATCATATTA 57.944 34.615 17.23 0.00 0.00 0.98
562 563 6.929625 AGCTTCAGTACGAGCATATCATATT 58.070 36.000 17.23 0.00 0.00 1.28
563 564 6.522625 AGCTTCAGTACGAGCATATCATAT 57.477 37.500 17.23 0.00 0.00 1.78
564 565 5.966742 AGCTTCAGTACGAGCATATCATA 57.033 39.130 17.23 0.00 0.00 2.15
565 566 4.862902 AGCTTCAGTACGAGCATATCAT 57.137 40.909 17.23 0.00 0.00 2.45
566 567 4.499865 GGAAGCTTCAGTACGAGCATATCA 60.500 45.833 27.02 0.00 0.00 2.15
567 568 3.984633 GGAAGCTTCAGTACGAGCATATC 59.015 47.826 27.02 12.69 0.00 1.63
568 569 3.384789 TGGAAGCTTCAGTACGAGCATAT 59.615 43.478 27.02 6.64 0.00 1.78
576 577 7.173390 AGTTTTAGAATGTGGAAGCTTCAGTAC 59.827 37.037 27.02 20.90 0.00 2.73
650 651 0.033504 GGACCAGACTGCTTTCGTCA 59.966 55.000 9.93 0.00 33.89 4.35
689 690 1.058404 GGAAACGAAACGTCTCTCCG 58.942 55.000 0.00 0.00 39.99 4.63
710 711 2.217847 CGACAAGTGGGCGATTAATACG 59.782 50.000 0.00 0.00 0.00 3.06
767 768 2.764128 GGTGAGGCGGAGATGGGA 60.764 66.667 0.00 0.00 0.00 4.37
768 769 2.196997 TTTGGTGAGGCGGAGATGGG 62.197 60.000 0.00 0.00 0.00 4.00
769 770 1.026718 GTTTGGTGAGGCGGAGATGG 61.027 60.000 0.00 0.00 0.00 3.51
770 771 1.026718 GGTTTGGTGAGGCGGAGATG 61.027 60.000 0.00 0.00 0.00 2.90
771 772 1.299976 GGTTTGGTGAGGCGGAGAT 59.700 57.895 0.00 0.00 0.00 2.75
772 773 2.111999 CTGGTTTGGTGAGGCGGAGA 62.112 60.000 0.00 0.00 0.00 3.71
773 774 1.672356 CTGGTTTGGTGAGGCGGAG 60.672 63.158 0.00 0.00 0.00 4.63
774 775 2.429930 CTGGTTTGGTGAGGCGGA 59.570 61.111 0.00 0.00 0.00 5.54
775 776 3.365265 GCTGGTTTGGTGAGGCGG 61.365 66.667 0.00 0.00 0.00 6.13
776 777 1.733402 TTTGCTGGTTTGGTGAGGCG 61.733 55.000 0.00 0.00 0.00 5.52
777 778 0.249447 GTTTGCTGGTTTGGTGAGGC 60.249 55.000 0.00 0.00 0.00 4.70
778 779 1.110442 TGTTTGCTGGTTTGGTGAGG 58.890 50.000 0.00 0.00 0.00 3.86
779 780 2.929398 GTTTGTTTGCTGGTTTGGTGAG 59.071 45.455 0.00 0.00 0.00 3.51
804 805 1.561542 GGTGTTGATGATGAGGAGGGT 59.438 52.381 0.00 0.00 0.00 4.34
806 807 1.133976 GGGGTGTTGATGATGAGGAGG 60.134 57.143 0.00 0.00 0.00 4.30
807 808 1.561076 TGGGGTGTTGATGATGAGGAG 59.439 52.381 0.00 0.00 0.00 3.69
808 809 1.561076 CTGGGGTGTTGATGATGAGGA 59.439 52.381 0.00 0.00 0.00 3.71
854 855 1.701031 TTGGTGGAAACAGGAGGCGA 61.701 55.000 0.00 0.00 44.46 5.54
863 868 1.616865 GGCTTAGGGTTTGGTGGAAAC 59.383 52.381 0.00 0.00 42.97 2.78
868 873 0.323451 GGGAGGCTTAGGGTTTGGTG 60.323 60.000 0.00 0.00 0.00 4.17
869 874 0.774491 TGGGAGGCTTAGGGTTTGGT 60.774 55.000 0.00 0.00 0.00 3.67
944 949 3.330853 GCGCGCGAAGGTATGGAG 61.331 66.667 37.18 0.00 0.00 3.86
1145 1150 1.684734 AGATACCCGGCGAGGTTGT 60.685 57.895 21.91 13.04 41.58 3.32
1153 1158 2.472909 GCTTGTGCAGATACCCGGC 61.473 63.158 0.00 0.00 39.41 6.13
1248 1253 3.760035 GCGGCGGAGAAGGACTCA 61.760 66.667 9.78 0.00 46.54 3.41
1281 1286 1.527034 ATGCTGTGACGATGCAGTTT 58.473 45.000 0.00 0.00 40.18 2.66
1425 1430 2.375766 GCACAGCAAGTCGGACGAG 61.376 63.158 1.89 0.54 0.00 4.18
1428 1433 3.414700 CGGCACAGCAAGTCGGAC 61.415 66.667 0.00 0.00 0.00 4.79
1434 1439 3.425713 ATGTCGCGGCACAGCAAG 61.426 61.111 19.15 0.00 36.85 4.01
1435 1440 3.725459 CATGTCGCGGCACAGCAA 61.725 61.111 19.15 0.00 36.85 3.91
1479 1484 1.116308 TCTTGGCGAATCGGTCCATA 58.884 50.000 4.35 0.00 0.00 2.74
1689 1706 2.431601 AGAGTGCGACGCAAGAGC 60.432 61.111 26.29 12.32 41.47 4.09
1707 1724 1.224069 CGGCAGGACTAATGATGCGG 61.224 60.000 0.00 0.00 39.58 5.69
1708 1725 1.835483 GCGGCAGGACTAATGATGCG 61.835 60.000 0.00 0.00 39.58 4.73
1746 1763 1.429463 GGAACAAAGCGATGACGAGT 58.571 50.000 0.00 0.00 42.66 4.18
1858 1875 1.144936 GAGGAGGGATGGCTTCGTG 59.855 63.158 0.00 0.00 0.00 4.35
1932 1949 4.026475 GTGATCTGCTTACGTAAGACATGC 60.026 45.833 33.89 21.27 43.62 4.06
1943 1960 1.407437 CCCCCACTGTGATCTGCTTAC 60.407 57.143 9.86 0.00 0.00 2.34
2019 2036 1.569479 GCAACTCGTCAACCCTCAGC 61.569 60.000 0.00 0.00 0.00 4.26
2020 2037 0.034059 AGCAACTCGTCAACCCTCAG 59.966 55.000 0.00 0.00 0.00 3.35
2039 2056 2.884639 TCGATCCTCTGATAATGTGCGA 59.115 45.455 0.00 0.00 0.00 5.10
2040 2057 2.983136 GTCGATCCTCTGATAATGTGCG 59.017 50.000 0.00 0.00 0.00 5.34
2052 2069 3.354131 GGCAGACTTGTCGATCCTC 57.646 57.895 0.00 0.00 0.00 3.71
2070 2087 4.201901 TGCACATCAGTTATGGTATTTGCG 60.202 41.667 0.00 0.00 40.16 4.85
2083 2100 0.819259 ACAAGGCGTTGCACATCAGT 60.819 50.000 18.61 0.00 37.14 3.41
2094 2111 1.961793 TGTGCTTCTTAACAAGGCGT 58.038 45.000 0.00 0.00 0.00 5.68
2098 2115 6.272318 TCCAAACATTGTGCTTCTTAACAAG 58.728 36.000 0.00 0.00 39.50 3.16
2108 2125 2.624838 CAGAACCTCCAAACATTGTGCT 59.375 45.455 0.00 0.00 0.00 4.40
2113 2130 2.158667 ACGTCCAGAACCTCCAAACATT 60.159 45.455 0.00 0.00 0.00 2.71
2117 2134 0.534203 GCACGTCCAGAACCTCCAAA 60.534 55.000 0.00 0.00 0.00 3.28
2152 2169 3.321968 GGGTTCAGAAACTTCTTGGCATT 59.678 43.478 0.00 0.00 34.74 3.56
2175 2192 3.507233 ACATATGTTGCCAAAGTGAGTGG 59.493 43.478 1.41 0.00 39.33 4.00
2179 2196 2.889678 TGCACATATGTTGCCAAAGTGA 59.110 40.909 20.37 4.78 0.00 3.41
2184 2201 3.740631 TTGTTGCACATATGTTGCCAA 57.259 38.095 20.37 16.38 0.00 4.52
2201 2218 3.314553 CAGTTATCGTCTCGGTGTTTGT 58.685 45.455 0.00 0.00 0.00 2.83
2205 2222 0.815734 CCCAGTTATCGTCTCGGTGT 59.184 55.000 0.00 0.00 0.00 4.16
2211 2228 4.527038 TGAAGTTTCTCCCAGTTATCGTCT 59.473 41.667 0.00 0.00 0.00 4.18
2263 2280 5.824624 GCAAGTGATCCTCCTTCAATGAATA 59.175 40.000 0.00 0.00 0.00 1.75
2327 2344 2.172851 TGGTAAGCGGAAAACGTCAT 57.827 45.000 0.00 0.00 46.52 3.06
2352 2369 4.702131 AGCAAGGATTCAAACACATACTCC 59.298 41.667 0.00 0.00 0.00 3.85
2353 2370 5.886960 AGCAAGGATTCAAACACATACTC 57.113 39.130 0.00 0.00 0.00 2.59
2356 2373 7.362834 CCAACATAGCAAGGATTCAAACACATA 60.363 37.037 0.00 0.00 0.00 2.29
2397 2414 1.301716 GGCAACCGACTCTGCTTCA 60.302 57.895 0.00 0.00 38.65 3.02
2462 2479 5.415077 AGCATCTTCAGTTTCTCTTTCATGG 59.585 40.000 0.00 0.00 0.00 3.66
2476 2493 0.107993 TCTTCCGGCAGCATCTTCAG 60.108 55.000 0.00 0.00 0.00 3.02
2508 2525 1.486310 AGTGTCAAGTGCAAGACCTCA 59.514 47.619 11.33 0.00 33.89 3.86
2516 2533 2.224042 ACTGAATCGAGTGTCAAGTGCA 60.224 45.455 0.00 0.00 0.00 4.57
2550 2567 1.270907 AGGCAGACAGTCAGGTAAGG 58.729 55.000 2.66 0.00 0.00 2.69
2622 2639 5.695851 CTTGTATTTCCAAGCAACAGTCT 57.304 39.130 0.00 0.00 35.80 3.24
2758 2775 8.693625 AGTAGTGGAGTAAACAGATGGTATAAC 58.306 37.037 0.00 0.00 0.00 1.89
2774 2791 7.655521 TTAGCACACATATAAGTAGTGGAGT 57.344 36.000 10.51 0.00 37.58 3.85
2799 2816 5.192927 TCTCTCTGCAAAGAAGGTTTTCAA 58.807 37.500 0.00 0.00 35.70 2.69
2840 2857 2.014857 CAGGGTCATTCACAGCATGAG 58.985 52.381 0.00 0.00 39.69 2.90
2855 2872 2.176798 TCACCAATTGTCTTTCCAGGGT 59.823 45.455 4.43 0.00 0.00 4.34
2909 2926 2.025037 TCCATATGCTTTGCTTGGGAGT 60.025 45.455 0.00 0.00 0.00 3.85
3048 3065 1.228429 GCCTTGTTAGTGCCCCACA 60.228 57.895 0.00 0.00 36.74 4.17
3087 3104 4.630644 TGAGCATCTCTTCCTCTTTGTT 57.369 40.909 0.00 0.00 34.92 2.83
3130 3147 2.839486 TCCTGCAGTTTCGTTCATCT 57.161 45.000 13.81 0.00 0.00 2.90
3160 3177 2.989840 CCTCTTTTATCTGATAGCGCCG 59.010 50.000 2.29 0.00 0.00 6.46
3203 3220 0.751277 TGGTCACTTGTGGCCTTGTG 60.751 55.000 22.65 7.93 0.00 3.33
3204 3221 0.185901 ATGGTCACTTGTGGCCTTGT 59.814 50.000 22.65 8.42 0.00 3.16
3205 3222 0.883833 GATGGTCACTTGTGGCCTTG 59.116 55.000 22.65 0.00 0.00 3.61
3206 3223 0.251341 GGATGGTCACTTGTGGCCTT 60.251 55.000 22.65 17.33 0.00 4.35
3207 3224 1.136329 AGGATGGTCACTTGTGGCCT 61.136 55.000 22.65 10.25 0.00 5.19
3208 3225 0.251341 AAGGATGGTCACTTGTGGCC 60.251 55.000 16.66 16.66 0.00 5.36
3209 3226 1.270550 CAAAGGATGGTCACTTGTGGC 59.729 52.381 0.64 0.00 0.00 5.01
3210 3227 2.586425 ACAAAGGATGGTCACTTGTGG 58.414 47.619 0.64 0.00 0.00 4.17
3354 3372 4.273318 TCTGAGAGAGCAACAGTAGCATA 58.727 43.478 0.00 0.00 33.93 3.14
3363 3381 4.159506 ACCATTCTACTCTGAGAGAGCAAC 59.840 45.833 17.71 0.00 46.12 4.17
3390 3408 9.842775 TCTGAACAGCAATCTATCAAGATATTT 57.157 29.630 0.00 0.00 41.81 1.40
3404 3422 5.251764 AGCAATTCTACTCTGAACAGCAAT 58.748 37.500 0.00 0.00 33.98 3.56
3409 3427 7.283127 AGTTTTTGAGCAATTCTACTCTGAACA 59.717 33.333 0.00 0.00 33.92 3.18
3462 3480 9.584008 ACTTGAGATTCAAATATATTGGCAGAT 57.416 29.630 0.00 0.00 35.73 2.90
3626 3707 2.757868 AGTAGCAAAAACAGGCAACACA 59.242 40.909 0.00 0.00 41.41 3.72
3627 3708 3.436700 AGTAGCAAAAACAGGCAACAC 57.563 42.857 0.00 0.00 41.41 3.32
3814 3895 5.762179 AACATAAGTGGATCAAGGACTCA 57.238 39.130 0.00 0.00 0.00 3.41
3855 3936 7.817440 AGTAGGAGGTATTCTAGATTCTCACA 58.183 38.462 0.00 0.00 0.00 3.58
3993 4074 4.590850 AGCTTTCACAAATCAAGTTCCC 57.409 40.909 0.00 0.00 0.00 3.97
4037 4118 7.227049 TCCTTTTAGGAAATTCCACATCAAC 57.773 36.000 15.21 0.00 42.51 3.18
4055 4136 5.570234 TTACGTCAAGCTGTTTTCCTTTT 57.430 34.783 0.00 0.00 0.00 2.27
4073 4154 6.189677 TCTTCACCCAATAATTTGCTTACG 57.810 37.500 0.00 0.00 0.00 3.18
4117 4198 5.412904 GTGAGATAAAAGGTTCCCTCAACTG 59.587 44.000 0.00 0.00 35.06 3.16
4133 4214 7.310052 GCATCATAGTACTCCATGGTGAGATAA 60.310 40.741 18.98 2.51 35.66 1.75
4143 4224 4.745351 TCCTCAGCATCATAGTACTCCAT 58.255 43.478 0.00 0.00 0.00 3.41
4145 4226 4.769488 TCATCCTCAGCATCATAGTACTCC 59.231 45.833 0.00 0.00 0.00 3.85
4220 4301 7.003402 TCGACCATGATCATTTATGATACCA 57.997 36.000 5.16 1.67 46.84 3.25
4247 4328 5.047377 TCGCATATAAGCATGATGGTACTCA 60.047 40.000 0.00 0.00 0.00 3.41
4260 4341 6.808704 TCTTCTGTCATGTATCGCATATAAGC 59.191 38.462 0.00 0.00 35.74 3.09
4289 4370 4.529897 CAGGGAAATCCAACATCATCTCA 58.470 43.478 1.22 0.00 38.24 3.27
4310 4391 1.810151 GCCAAGTTCGCATAGTTTCCA 59.190 47.619 0.00 0.00 0.00 3.53
4314 4395 1.165270 GGTGCCAAGTTCGCATAGTT 58.835 50.000 0.00 0.00 38.76 2.24
4316 4397 0.729116 CTGGTGCCAAGTTCGCATAG 59.271 55.000 0.00 0.00 38.76 2.23
4391 4472 2.876955 GCTGTATGCTTTGCGGCA 59.123 55.556 0.00 0.00 46.63 5.69
4556 4637 8.341892 ACTTCATCCACCTCTTATTCTTTTTC 57.658 34.615 0.00 0.00 0.00 2.29
4697 4778 9.712305 ATGTCGTTATAAGGATAAATCAAGAGG 57.288 33.333 10.82 0.00 29.20 3.69
4720 4801 1.075482 CACTGTGGCCTTGGGATGT 59.925 57.895 3.32 0.00 0.00 3.06
4734 4815 4.662961 TGTGCGCGTCTCCCACTG 62.663 66.667 8.43 0.00 0.00 3.66
4735 4816 3.865929 CTTGTGCGCGTCTCCCACT 62.866 63.158 8.43 0.00 0.00 4.00
4740 4821 0.111089 CAAGTTCTTGTGCGCGTCTC 60.111 55.000 8.43 1.61 0.00 3.36
4745 4826 0.663153 ACTTCCAAGTTCTTGTGCGC 59.337 50.000 0.00 0.00 35.21 6.09
4775 4856 0.319125 CTTCTTCCGCGCCTCTATCC 60.319 60.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.