Multiple sequence alignment - TraesCS6B01G160200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G160200 chr6B 100.000 2999 0 0 1 2999 164036009 164033011 0.000000e+00 5539.0
1 TraesCS6B01G160200 chr6D 92.919 2090 84 15 1 2042 86603565 86601492 0.000000e+00 2981.0
2 TraesCS6B01G160200 chr6D 86.688 954 84 26 2084 2999 86601494 86600546 0.000000e+00 1018.0
3 TraesCS6B01G160200 chr6A 91.886 2132 76 29 1 2064 104115090 104112988 0.000000e+00 2889.0
4 TraesCS6B01G160200 chr6A 89.552 938 74 13 2081 2999 104112999 104112067 0.000000e+00 1168.0
5 TraesCS6B01G160200 chr7A 87.419 461 51 7 1270 1728 637864969 637864514 9.530000e-145 523.0
6 TraesCS6B01G160200 chr7A 80.087 231 37 4 1735 1956 637864399 637864169 2.390000e-36 163.0
7 TraesCS6B01G160200 chr7B 87.336 458 51 7 1270 1725 597082594 597082142 4.430000e-143 518.0
8 TraesCS6B01G160200 chr7B 80.087 231 37 4 1735 1956 597081998 597081768 2.390000e-36 163.0
9 TraesCS6B01G160200 chr7D 86.681 458 54 7 1270 1725 552164990 552164538 4.460000e-138 501.0
10 TraesCS6B01G160200 chr7D 79.654 231 38 4 1735 1956 552164395 552164165 1.110000e-34 158.0
11 TraesCS6B01G160200 chr1B 94.737 38 2 0 2334 2371 600601488 600601525 3.230000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G160200 chr6B 164033011 164036009 2998 True 5539.0 5539 100.0000 1 2999 1 chr6B.!!$R1 2998
1 TraesCS6B01G160200 chr6D 86600546 86603565 3019 True 1999.5 2981 89.8035 1 2999 2 chr6D.!!$R1 2998
2 TraesCS6B01G160200 chr6A 104112067 104115090 3023 True 2028.5 2889 90.7190 1 2999 2 chr6A.!!$R1 2998
3 TraesCS6B01G160200 chr7A 637864169 637864969 800 True 343.0 523 83.7530 1270 1956 2 chr7A.!!$R1 686
4 TraesCS6B01G160200 chr7B 597081768 597082594 826 True 340.5 518 83.7115 1270 1956 2 chr7B.!!$R1 686
5 TraesCS6B01G160200 chr7D 552164165 552164990 825 True 329.5 501 83.1675 1270 1956 2 chr7D.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 892 0.527817 GGTACGGTGAGCCATTCTCG 60.528 60.0 0.0 0.0 44.86 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2312 0.037697 AAGCGCACACAATAGACCGA 60.038 50.0 11.47 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.350219 TTGAATGAGCTCAGGTTACCC 57.650 47.619 22.96 6.23 0.00 3.69
27 28 2.265367 TGAATGAGCTCAGGTTACCCA 58.735 47.619 22.96 8.62 0.00 4.51
35 36 2.876079 GCTCAGGTTACCCAGAAACAGG 60.876 54.545 0.00 0.00 0.00 4.00
60 61 0.588252 ACTTGAACATGTCAGCGTGC 59.412 50.000 0.00 0.00 37.61 5.34
130 135 2.151307 TAGACCGACAGCCACCTCCT 62.151 60.000 0.00 0.00 0.00 3.69
132 137 1.668101 GACCGACAGCCACCTCCTAG 61.668 65.000 0.00 0.00 0.00 3.02
343 352 1.266989 GCCCGTCTTCAAAGTTCCAAG 59.733 52.381 0.00 0.00 0.00 3.61
347 356 3.123621 CCGTCTTCAAAGTTCCAAGATCG 59.876 47.826 0.98 6.05 0.00 3.69
372 381 3.009473 AGCCATCTCCTGTAGCTTTTCAA 59.991 43.478 0.00 0.00 0.00 2.69
600 623 2.149973 AATCAAAGGAGTGCCATCCC 57.850 50.000 0.80 0.00 40.53 3.85
692 715 1.669795 GCCAAACATGCCAACTACTGC 60.670 52.381 0.00 0.00 0.00 4.40
697 720 3.077484 ACATGCCAACTACTGCTCAAT 57.923 42.857 0.00 0.00 0.00 2.57
845 892 0.527817 GGTACGGTGAGCCATTCTCG 60.528 60.000 0.00 0.00 44.86 4.04
882 929 3.938963 CCTTGTATTAACACCATCGCTGT 59.061 43.478 0.00 0.00 34.61 4.40
1215 1294 4.729856 CCGGGGGTCACGTTCGTC 62.730 72.222 0.00 0.00 0.00 4.20
1582 1664 1.000771 CTCCCAGACCTCCTCGACA 60.001 63.158 0.00 0.00 0.00 4.35
1645 1727 1.588597 CTGCTCTTCTCCGACTGCA 59.411 57.895 0.00 0.00 0.00 4.41
1760 1980 3.051210 CAGGATGGCGGCGATCTA 58.949 61.111 21.65 0.00 0.00 1.98
1912 2141 4.111016 CGTCGCTCGGCCACTACA 62.111 66.667 2.24 0.00 35.71 2.74
2043 2272 4.025145 CAGTTTGGTTCCTTGTACTTCGAC 60.025 45.833 0.00 0.00 0.00 4.20
2044 2273 2.427232 TGGTTCCTTGTACTTCGACG 57.573 50.000 0.00 0.00 0.00 5.12
2045 2274 1.955778 TGGTTCCTTGTACTTCGACGA 59.044 47.619 0.00 0.00 0.00 4.20
2056 2285 1.405821 ACTTCGACGATCAGATGGGTC 59.594 52.381 0.00 0.00 0.00 4.46
2057 2286 4.616592 CGACGATCAGATGGGTCG 57.383 61.111 15.49 15.49 44.92 4.79
2058 2287 1.008424 CGACGATCAGATGGGTCGG 60.008 63.158 19.23 6.98 46.08 4.79
2059 2288 1.725557 CGACGATCAGATGGGTCGGT 61.726 60.000 19.23 0.00 46.08 4.69
2060 2289 0.030908 GACGATCAGATGGGTCGGTC 59.969 60.000 1.87 0.00 39.53 4.79
2061 2290 0.395862 ACGATCAGATGGGTCGGTCT 60.396 55.000 1.87 0.00 39.53 3.85
2062 2291 1.133884 ACGATCAGATGGGTCGGTCTA 60.134 52.381 1.87 0.00 39.53 2.59
2063 2292 2.163509 CGATCAGATGGGTCGGTCTAT 58.836 52.381 0.00 0.00 0.00 1.98
2064 2293 2.162608 CGATCAGATGGGTCGGTCTATC 59.837 54.545 0.00 0.00 0.00 2.08
2065 2294 1.996798 TCAGATGGGTCGGTCTATCC 58.003 55.000 0.00 0.00 0.00 2.59
2066 2295 0.969894 CAGATGGGTCGGTCTATCCC 59.030 60.000 0.00 0.00 41.41 3.85
2067 2296 0.178929 AGATGGGTCGGTCTATCCCC 60.179 60.000 0.00 0.00 40.41 4.81
2068 2297 1.152096 ATGGGTCGGTCTATCCCCC 60.152 63.158 0.00 0.00 40.41 5.40
2069 2298 1.675936 ATGGGTCGGTCTATCCCCCT 61.676 60.000 0.00 0.00 40.41 4.79
2070 2299 1.533513 GGGTCGGTCTATCCCCCTC 60.534 68.421 0.00 0.00 35.57 4.30
2071 2300 1.232216 GGTCGGTCTATCCCCCTCA 59.768 63.158 0.00 0.00 0.00 3.86
2072 2301 0.398098 GGTCGGTCTATCCCCCTCAA 60.398 60.000 0.00 0.00 0.00 3.02
2073 2302 1.492764 GTCGGTCTATCCCCCTCAAA 58.507 55.000 0.00 0.00 0.00 2.69
2074 2303 1.835531 GTCGGTCTATCCCCCTCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
2075 2304 2.237893 GTCGGTCTATCCCCCTCAAAAA 59.762 50.000 0.00 0.00 0.00 1.94
2147 2376 1.044611 TGTGGTGTGGTCTCGATCAA 58.955 50.000 0.00 0.00 0.00 2.57
2195 2424 5.459505 TGAACAAGTGATTTTTAAGGGGGA 58.540 37.500 0.00 0.00 0.00 4.81
2283 2515 5.355071 ACAAGTCACGTATATACCGAACTGA 59.645 40.000 7.30 1.28 0.00 3.41
2284 2516 6.127925 ACAAGTCACGTATATACCGAACTGAA 60.128 38.462 7.30 0.00 0.00 3.02
2288 2520 7.274250 AGTCACGTATATACCGAACTGAAAAAC 59.726 37.037 7.30 0.00 0.00 2.43
2290 2522 7.274033 TCACGTATATACCGAACTGAAAAACTG 59.726 37.037 7.30 0.00 0.00 3.16
2298 2538 6.217294 ACCGAACTGAAAAACTGAAAAACAA 58.783 32.000 0.00 0.00 0.00 2.83
2321 2561 4.101942 CAGAACGCTAGTTTTGCACAAAA 58.898 39.130 4.47 4.47 41.34 2.44
2358 2598 9.894439 CAAAAAGTAAAATTACAAACAAGACCG 57.106 29.630 6.13 0.00 36.12 4.79
2391 2634 5.690409 TCTGTCACGAAGTTTAGAATGACAC 59.310 40.000 0.91 0.00 41.61 3.67
2402 2645 6.149474 AGTTTAGAATGACACATTTAGCGCTT 59.851 34.615 18.68 0.00 0.00 4.68
2406 2649 5.586243 AGAATGACACATTTAGCGCTTACAT 59.414 36.000 18.68 1.68 0.00 2.29
2414 2657 7.762615 ACACATTTAGCGCTTACATACTTCTTA 59.237 33.333 18.68 0.00 0.00 2.10
2456 2699 9.640963 AAGAACGTGCCATATTCTTATATAGAC 57.359 33.333 4.78 0.00 40.13 2.59
2487 2730 8.986477 AAATAGGTTGCAAGAAACATTCATAC 57.014 30.769 0.00 0.00 0.00 2.39
2496 2739 6.363357 GCAAGAAACATTCATACAACTTGGTC 59.637 38.462 0.00 0.00 35.53 4.02
2511 2754 0.680280 TGGTCCTACCGAGCTCTCAC 60.680 60.000 12.85 0.00 42.58 3.51
2519 2762 3.749064 GAGCTCTCACGCCACGGA 61.749 66.667 6.43 0.00 0.00 4.69
2544 2787 2.464157 AGCCAAAGAGAAAGAGTCGG 57.536 50.000 0.00 0.00 0.00 4.79
2554 2797 4.216687 AGAGAAAGAGTCGGTGTGTTCTAG 59.783 45.833 0.00 0.00 0.00 2.43
2567 2814 8.454106 TCGGTGTGTTCTAGTAGTACTATTTTC 58.546 37.037 10.46 3.52 29.08 2.29
2568 2815 8.239314 CGGTGTGTTCTAGTAGTACTATTTTCA 58.761 37.037 10.46 5.74 29.08 2.69
2585 2832 9.512588 ACTATTTTCATGTCTTTGAGTTGATCT 57.487 29.630 0.00 0.00 0.00 2.75
2600 2847 9.936759 TTGAGTTGATCTATACAATGTGTGTTA 57.063 29.630 0.00 0.00 41.98 2.41
2679 2927 2.412870 TCATGTGTGTTCGATGTCCAC 58.587 47.619 0.00 0.00 0.00 4.02
2687 2935 2.218603 GTTCGATGTCCACCAAACACT 58.781 47.619 0.00 0.00 0.00 3.55
2692 2940 2.254546 TGTCCACCAAACACTAGCAG 57.745 50.000 0.00 0.00 0.00 4.24
2702 2950 5.104900 ACCAAACACTAGCAGTTATCTAGGG 60.105 44.000 2.01 0.00 41.95 3.53
2792 3042 4.475135 GCCCCCGAGTTCTCCTGC 62.475 72.222 0.00 0.00 0.00 4.85
2866 3139 7.378966 TCTATTGAACAAGTCACTCCTAGTTG 58.621 38.462 0.00 0.00 35.39 3.16
2876 3149 5.010719 AGTCACTCCTAGTTGACAATCGAAA 59.989 40.000 15.16 0.00 32.49 3.46
2922 3195 5.899299 ACTTGATGGAATGCTGAATTAAGC 58.101 37.500 7.97 7.97 43.82 3.09
2923 3196 5.655532 ACTTGATGGAATGCTGAATTAAGCT 59.344 36.000 16.00 0.00 43.90 3.74
2930 3203 6.379133 TGGAATGCTGAATTAAGCTGAGAAAT 59.621 34.615 16.00 0.00 43.90 2.17
2931 3204 7.557358 TGGAATGCTGAATTAAGCTGAGAAATA 59.443 33.333 16.00 0.00 43.90 1.40
2932 3205 8.408601 GGAATGCTGAATTAAGCTGAGAAATAA 58.591 33.333 16.00 0.00 43.90 1.40
2933 3206 9.448294 GAATGCTGAATTAAGCTGAGAAATAAG 57.552 33.333 16.00 0.00 43.90 1.73
2934 3207 7.928307 TGCTGAATTAAGCTGAGAAATAAGT 57.072 32.000 16.00 0.00 43.90 2.24
2996 3271 6.683715 TGTTCGAGTTTTTCCAAAGTTTCTT 58.316 32.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.685139 TCAAGTCCTAGCCTGTTTCTG 57.315 47.619 0.00 0.00 0.00 3.02
27 28 3.391296 TGTTCAAGTCCTAGCCTGTTTCT 59.609 43.478 0.00 0.00 0.00 2.52
35 36 2.675348 GCTGACATGTTCAAGTCCTAGC 59.325 50.000 0.00 5.57 32.21 3.42
60 61 1.788308 CAAAAGCACTGGCATGAAACG 59.212 47.619 0.00 0.00 44.61 3.60
130 135 4.240096 GCAGGAACTAACGTTTGTAGCTA 58.760 43.478 15.57 0.00 36.02 3.32
132 137 2.803956 TGCAGGAACTAACGTTTGTAGC 59.196 45.455 15.57 16.03 36.02 3.58
270 275 6.655078 AACAAAAGAAGGTTGCAGATACAT 57.345 33.333 0.00 0.00 0.00 2.29
417 439 5.717119 TCTTCTTTTCTCCGTGTGGTATAC 58.283 41.667 0.00 0.00 36.30 1.47
431 453 7.228706 TGTCAGGACCTTATGTTTCTTCTTTTC 59.771 37.037 0.00 0.00 0.00 2.29
527 549 1.352352 CACTCATATCCCCACCATCCC 59.648 57.143 0.00 0.00 0.00 3.85
600 623 3.191371 GTGGCTCAAATTCTGGTAGGTTG 59.809 47.826 0.00 0.00 0.00 3.77
784 811 1.296715 GGCGTGAGAGTTGGGATGT 59.703 57.895 0.00 0.00 0.00 3.06
785 812 1.450312 GGGCGTGAGAGTTGGGATG 60.450 63.158 0.00 0.00 0.00 3.51
786 813 1.613630 AGGGCGTGAGAGTTGGGAT 60.614 57.895 0.00 0.00 0.00 3.85
787 814 2.203788 AGGGCGTGAGAGTTGGGA 60.204 61.111 0.00 0.00 0.00 4.37
882 929 1.686587 TCTTGTGCTCCGAGTGAAGAA 59.313 47.619 0.00 0.00 0.00 2.52
1569 1651 3.063084 GCGGTGTCGAGGAGGTCT 61.063 66.667 0.00 0.00 39.00 3.85
1743 1963 1.373497 GTAGATCGCCGCCATCCTG 60.373 63.158 0.00 0.00 0.00 3.86
1760 1980 2.573869 CCATCACTGCCGACGAGT 59.426 61.111 0.00 0.00 0.00 4.18
1770 1990 3.958147 CTTGGTCCGCGCCATCACT 62.958 63.158 6.28 0.00 38.48 3.41
1968 2197 4.124351 TTCGTAGTGGAGCCGGCG 62.124 66.667 23.20 3.70 0.00 6.46
1969 2198 2.202756 CTTCGTAGTGGAGCCGGC 60.203 66.667 21.89 21.89 0.00 6.13
1970 2199 0.179134 CTTCTTCGTAGTGGAGCCGG 60.179 60.000 0.00 0.00 0.00 6.13
1971 2200 0.179134 CCTTCTTCGTAGTGGAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
1972 2201 0.460459 GCCTTCTTCGTAGTGGAGCC 60.460 60.000 7.69 0.00 0.00 4.70
1973 2202 0.802607 CGCCTTCTTCGTAGTGGAGC 60.803 60.000 7.69 0.00 0.00 4.70
1974 2203 0.809385 TCGCCTTCTTCGTAGTGGAG 59.191 55.000 7.69 5.16 0.00 3.86
1975 2204 1.068055 GTTCGCCTTCTTCGTAGTGGA 60.068 52.381 7.69 0.00 0.00 4.02
1976 2205 1.067776 AGTTCGCCTTCTTCGTAGTGG 60.068 52.381 0.00 0.00 0.00 4.00
1977 2206 2.349297 AGTTCGCCTTCTTCGTAGTG 57.651 50.000 0.00 0.00 0.00 2.74
1980 2209 2.094894 CGACTAGTTCGCCTTCTTCGTA 59.905 50.000 0.00 0.00 41.87 3.43
2043 2272 1.605753 TAGACCGACCCATCTGATCG 58.394 55.000 0.00 0.00 35.62 3.69
2044 2273 2.494073 GGATAGACCGACCCATCTGATC 59.506 54.545 0.00 0.00 0.00 2.92
2045 2274 2.530701 GGATAGACCGACCCATCTGAT 58.469 52.381 0.00 0.00 0.00 2.90
2075 2304 3.818773 CACACAATAGACCGACCCTTTTT 59.181 43.478 0.00 0.00 0.00 1.94
2076 2305 3.408634 CACACAATAGACCGACCCTTTT 58.591 45.455 0.00 0.00 0.00 2.27
2077 2306 2.874457 GCACACAATAGACCGACCCTTT 60.874 50.000 0.00 0.00 0.00 3.11
2078 2307 1.338769 GCACACAATAGACCGACCCTT 60.339 52.381 0.00 0.00 0.00 3.95
2079 2308 0.249398 GCACACAATAGACCGACCCT 59.751 55.000 0.00 0.00 0.00 4.34
2080 2309 1.082117 CGCACACAATAGACCGACCC 61.082 60.000 0.00 0.00 0.00 4.46
2081 2310 1.693083 GCGCACACAATAGACCGACC 61.693 60.000 0.30 0.00 0.00 4.79
2082 2311 0.736325 AGCGCACACAATAGACCGAC 60.736 55.000 11.47 0.00 0.00 4.79
2083 2312 0.037697 AAGCGCACACAATAGACCGA 60.038 50.000 11.47 0.00 0.00 4.69
2084 2313 0.796312 AAAGCGCACACAATAGACCG 59.204 50.000 11.47 0.00 0.00 4.79
2147 2376 5.398603 TGTTCCACAAGTGTCATTTTGTT 57.601 34.783 0.00 0.00 35.46 2.83
2253 2485 6.983890 TCGGTATATACGTGACTTGTAGTGTA 59.016 38.462 6.79 0.00 0.00 2.90
2283 2515 5.694458 AGCGTTCTGTTGTTTTTCAGTTTTT 59.306 32.000 0.00 0.00 33.89 1.94
2284 2516 5.227152 AGCGTTCTGTTGTTTTTCAGTTTT 58.773 33.333 0.00 0.00 33.89 2.43
2288 2520 5.156804 ACTAGCGTTCTGTTGTTTTTCAG 57.843 39.130 0.00 0.00 0.00 3.02
2290 2522 6.682943 CAAAACTAGCGTTCTGTTGTTTTTC 58.317 36.000 0.00 0.00 36.07 2.29
2298 2538 2.285083 TGTGCAAAACTAGCGTTCTGT 58.715 42.857 0.00 0.00 31.66 3.41
2358 2598 6.969828 AAACTTCGTGACAGAGGATTATTC 57.030 37.500 0.00 0.00 0.00 1.75
2361 2601 6.829229 TCTAAACTTCGTGACAGAGGATTA 57.171 37.500 0.00 0.00 0.00 1.75
2414 2657 6.676456 GCACGTTCTTGATATGCTCTTGAAAT 60.676 38.462 0.00 0.00 33.44 2.17
2456 2699 4.630894 TTCTTGCAACCTATTTATGCCG 57.369 40.909 0.00 0.00 39.31 5.69
2467 2710 6.452244 GTTGTATGAATGTTTCTTGCAACC 57.548 37.500 17.99 7.60 45.63 3.77
2471 2714 6.215845 ACCAAGTTGTATGAATGTTTCTTGC 58.784 36.000 1.45 0.00 32.52 4.01
2487 2730 0.608640 AGCTCGGTAGGACCAAGTTG 59.391 55.000 0.00 0.00 38.47 3.16
2496 2739 2.409651 GCGTGAGAGCTCGGTAGG 59.590 66.667 8.37 5.73 0.00 3.18
2511 2754 3.272334 GGCTATGCTTCCGTGGCG 61.272 66.667 0.00 0.00 35.50 5.69
2519 2762 4.916183 ACTCTTTCTCTTTGGCTATGCTT 58.084 39.130 0.00 0.00 0.00 3.91
2568 2815 9.896645 ACATTGTATAGATCAACTCAAAGACAT 57.103 29.630 0.00 0.00 0.00 3.06
2620 2868 3.838120 TCATTCTCTTGAGCTACACACG 58.162 45.455 0.00 0.00 0.00 4.49
2625 2873 5.808030 GTGGTACTTCATTCTCTTGAGCTAC 59.192 44.000 0.00 0.00 0.00 3.58
2679 2927 5.128827 TCCCTAGATAACTGCTAGTGTTTGG 59.871 44.000 8.19 0.00 34.82 3.28
2687 2935 8.721133 TTGATTACATCCCTAGATAACTGCTA 57.279 34.615 0.00 0.00 0.00 3.49
2718 2968 1.202639 CCTATGCGGATAGGTGCAACA 60.203 52.381 29.40 0.00 44.63 3.33
2726 2976 4.456280 TTCACATAGCCTATGCGGATAG 57.544 45.455 16.39 16.39 44.33 2.08
2776 3026 4.148825 CGCAGGAGAACTCGGGGG 62.149 72.222 0.00 0.00 0.00 5.40
2903 3176 5.530171 TCTCAGCTTAATTCAGCATTCCATC 59.470 40.000 13.86 0.00 42.84 3.51
2922 3195 7.615582 TTTGGCAGATGTACTTATTTCTCAG 57.384 36.000 0.00 0.00 0.00 3.35
2923 3196 7.882791 TCTTTTGGCAGATGTACTTATTTCTCA 59.117 33.333 0.00 0.00 0.00 3.27
2930 3203 7.432148 TCCTATCTTTTGGCAGATGTACTTA 57.568 36.000 0.00 0.00 35.08 2.24
2931 3204 6.313519 TCCTATCTTTTGGCAGATGTACTT 57.686 37.500 0.00 0.00 35.08 2.24
2932 3205 5.957771 TCCTATCTTTTGGCAGATGTACT 57.042 39.130 0.00 0.00 35.08 2.73
2933 3206 8.854614 ATAATCCTATCTTTTGGCAGATGTAC 57.145 34.615 0.00 0.00 35.08 2.90
2934 3207 9.944376 GTATAATCCTATCTTTTGGCAGATGTA 57.056 33.333 0.00 0.00 35.08 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.