Multiple sequence alignment - TraesCS6B01G159700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G159700 chr6B 100.000 5282 0 0 961 6242 163235284 163230003 0.000000e+00 9755.0
1 TraesCS6B01G159700 chr6B 100.000 621 0 0 1 621 163236244 163235624 0.000000e+00 1147.0
2 TraesCS6B01G159700 chr6D 94.313 4660 168 33 962 5585 86148073 86143475 0.000000e+00 7047.0
3 TraesCS6B01G159700 chr6D 95.092 652 11 7 5611 6242 86143482 86142832 0.000000e+00 1007.0
4 TraesCS6B01G159700 chr6D 85.714 224 5 8 425 621 86148331 86148108 1.760000e-50 211.0
5 TraesCS6B01G159700 chr6D 86.719 128 17 0 245 372 86148469 86148342 6.520000e-30 143.0
6 TraesCS6B01G159700 chr6A 94.572 2174 90 9 962 3119 103764144 103761983 0.000000e+00 3336.0
7 TraesCS6B01G159700 chr6A 93.754 1617 60 19 3118 4728 103761901 103760320 0.000000e+00 2388.0
8 TraesCS6B01G159700 chr6A 94.641 765 28 5 4825 5585 103760281 103759526 0.000000e+00 1173.0
9 TraesCS6B01G159700 chr6A 91.581 677 11 12 5610 6242 103759534 103758860 0.000000e+00 893.0
10 TraesCS6B01G159700 chr6A 90.244 164 7 3 467 621 103764341 103764178 8.200000e-49 206.0
11 TraesCS6B01G159700 chr5A 89.431 738 54 5 4822 5556 323084048 323084764 0.000000e+00 909.0
12 TraesCS6B01G159700 chr5A 92.857 210 15 0 4519 4728 323083803 323084012 7.860000e-79 305.0
13 TraesCS6B01G159700 chr4A 89.575 729 53 8 4822 5548 113486045 113486752 0.000000e+00 904.0
14 TraesCS6B01G159700 chr4A 93.333 210 14 0 4519 4728 113485800 113486009 1.690000e-80 311.0
15 TraesCS6B01G159700 chr3D 87.772 368 36 5 1088 1454 420473709 420473350 7.480000e-114 422.0
16 TraesCS6B01G159700 chr7B 80.562 463 85 5 3485 3945 594418883 594418424 9.960000e-93 351.0
17 TraesCS6B01G159700 chr7B 84.188 234 33 4 1144 1376 511947404 511947634 2.260000e-54 224.0
18 TraesCS6B01G159700 chr7B 84.746 118 18 0 2590 2707 594419827 594419710 1.100000e-22 119.0
19 TraesCS6B01G159700 chr7B 80.769 78 9 4 3083 3157 75793893 75793819 8.740000e-04 56.5
20 TraesCS6B01G159700 chr1B 88.136 236 26 2 1144 1379 113518791 113519024 4.760000e-71 279.0
21 TraesCS6B01G159700 chr5B 86.920 237 27 4 1144 1379 84735462 84735229 4.800000e-66 263.0
22 TraesCS6B01G159700 chr2B 86.498 237 28 4 1144 1379 613042945 613042712 2.230000e-64 257.0
23 TraesCS6B01G159700 chr4D 86.772 189 10 5 1067 1249 24254389 24254210 4.940000e-46 196.0
24 TraesCS6B01G159700 chr7D 84.677 124 18 1 2584 2707 550103373 550103251 8.500000e-24 122.0
25 TraesCS6B01G159700 chr7A 83.740 123 19 1 2585 2707 635502138 635502017 1.420000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G159700 chr6B 163230003 163236244 6241 True 5451.0 9755 100.0000 1 6242 2 chr6B.!!$R1 6241
1 TraesCS6B01G159700 chr6D 86142832 86148469 5637 True 2102.0 7047 90.4595 245 6242 4 chr6D.!!$R1 5997
2 TraesCS6B01G159700 chr6A 103758860 103764341 5481 True 1599.2 3336 92.9584 467 6242 5 chr6A.!!$R1 5775
3 TraesCS6B01G159700 chr5A 323083803 323084764 961 False 607.0 909 91.1440 4519 5556 2 chr5A.!!$F1 1037
4 TraesCS6B01G159700 chr4A 113485800 113486752 952 False 607.5 904 91.4540 4519 5548 2 chr4A.!!$F1 1029
5 TraesCS6B01G159700 chr7B 594418424 594419827 1403 True 235.0 351 82.6540 2590 3945 2 chr7B.!!$R2 1355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 391 0.112995 TGCTGCAACCAATCTTCCCT 59.887 50.000 0.00 0.00 0.00 4.20 F
545 551 0.462937 TATGGGCCGAACACCATTCG 60.463 55.000 0.00 2.12 44.85 3.34 F
1300 1336 0.731417 CGCTTTGCTGATTCTCCTGG 59.269 55.000 0.00 0.00 0.00 4.45 F
1800 1854 1.067565 TCTGCCGAGTTCATCTGTGTC 60.068 52.381 0.00 0.00 0.00 3.67 F
2561 2616 2.094906 TCCCGAGTGTGTTATTGAGTCG 60.095 50.000 0.00 0.00 33.29 4.18 F
3923 4584 0.111061 TGGTGCTGAACAAGGCAGAT 59.889 50.000 0.00 0.00 39.22 2.90 F
4300 4973 1.271001 TGCAGGACTGGTGTCTTCATG 60.271 52.381 1.01 0.00 42.54 3.07 F
4781 5455 0.988832 AATACCTTCCTCCACCGCAA 59.011 50.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 1628 0.389166 GCAGCACAGACTAGCGAACT 60.389 55.000 0.00 0.0 35.48 3.01 R
1626 1680 1.032014 AACCATCAACACCACACAGC 58.968 50.000 0.00 0.0 0.00 4.40 R
3066 3152 0.250467 GAAGCTGGGCAGAACAGACA 60.250 55.000 0.00 0.0 38.20 3.41 R
3363 3534 3.118261 TGTCAGCCAGAAATCCTGTATCC 60.118 47.826 0.00 0.0 41.33 2.59 R
4548 5222 0.034574 ACCTACGCATGGAAATGGCA 60.035 50.000 0.00 0.0 0.00 4.92 R
4771 5445 0.310854 GGTTTCACTTTGCGGTGGAG 59.689 55.000 4.83 0.0 37.75 3.86 R
5123 5798 0.317020 GGCAGACGAACAACACTTGC 60.317 55.000 0.00 0.0 0.00 4.01 R
5787 6482 0.317479 ACTAACCGTCTGTCTGGTGC 59.683 55.000 0.00 0.0 38.82 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.436175 TGCTAATAAGATTGTTGCCTAGCA 58.564 37.500 0.00 0.00 38.47 3.49
24 25 6.064060 TGCTAATAAGATTGTTGCCTAGCAT 58.936 36.000 0.00 0.00 38.76 3.79
25 26 7.223584 TGCTAATAAGATTGTTGCCTAGCATA 58.776 34.615 0.00 0.00 38.76 3.14
26 27 7.173218 TGCTAATAAGATTGTTGCCTAGCATAC 59.827 37.037 0.00 0.00 38.76 2.39
27 28 7.389053 GCTAATAAGATTGTTGCCTAGCATACT 59.611 37.037 0.00 0.00 38.76 2.12
28 29 7.736447 AATAAGATTGTTGCCTAGCATACTC 57.264 36.000 0.00 0.00 38.76 2.59
29 30 5.365021 AAGATTGTTGCCTAGCATACTCT 57.635 39.130 0.00 0.00 38.76 3.24
30 31 4.701765 AGATTGTTGCCTAGCATACTCTG 58.298 43.478 0.00 0.00 38.76 3.35
31 32 4.406972 AGATTGTTGCCTAGCATACTCTGA 59.593 41.667 0.00 0.00 38.76 3.27
32 33 4.760530 TTGTTGCCTAGCATACTCTGAT 57.239 40.909 0.00 0.00 38.76 2.90
33 34 4.760530 TGTTGCCTAGCATACTCTGATT 57.239 40.909 0.00 0.00 38.76 2.57
34 35 5.102953 TGTTGCCTAGCATACTCTGATTT 57.897 39.130 0.00 0.00 38.76 2.17
35 36 4.877823 TGTTGCCTAGCATACTCTGATTTG 59.122 41.667 0.00 0.00 38.76 2.32
36 37 5.118990 GTTGCCTAGCATACTCTGATTTGA 58.881 41.667 0.00 0.00 38.76 2.69
37 38 4.953667 TGCCTAGCATACTCTGATTTGAG 58.046 43.478 0.00 0.00 35.38 3.02
38 39 3.745458 GCCTAGCATACTCTGATTTGAGC 59.255 47.826 0.00 0.00 37.58 4.26
39 40 4.502950 GCCTAGCATACTCTGATTTGAGCT 60.503 45.833 0.00 0.00 37.58 4.09
40 41 5.609423 CCTAGCATACTCTGATTTGAGCTT 58.391 41.667 0.00 0.00 37.58 3.74
41 42 5.466058 CCTAGCATACTCTGATTTGAGCTTG 59.534 44.000 0.00 0.00 37.58 4.01
42 43 3.626670 AGCATACTCTGATTTGAGCTTGC 59.373 43.478 9.68 9.68 41.50 4.01
43 44 3.626670 GCATACTCTGATTTGAGCTTGCT 59.373 43.478 0.00 0.00 39.77 3.91
44 45 4.096081 GCATACTCTGATTTGAGCTTGCTT 59.904 41.667 0.00 0.00 39.77 3.91
45 46 5.570344 CATACTCTGATTTGAGCTTGCTTG 58.430 41.667 0.00 0.00 37.58 4.01
46 47 2.228343 ACTCTGATTTGAGCTTGCTTGC 59.772 45.455 0.00 0.00 37.58 4.01
47 48 1.542915 TCTGATTTGAGCTTGCTTGCC 59.457 47.619 0.00 0.00 0.00 4.52
48 49 1.271379 CTGATTTGAGCTTGCTTGCCA 59.729 47.619 0.00 0.00 0.00 4.92
49 50 1.897133 TGATTTGAGCTTGCTTGCCAT 59.103 42.857 0.00 0.00 0.00 4.40
50 51 3.090790 TGATTTGAGCTTGCTTGCCATA 58.909 40.909 0.00 0.00 0.00 2.74
51 52 3.702548 TGATTTGAGCTTGCTTGCCATAT 59.297 39.130 0.00 0.00 0.00 1.78
52 53 4.888823 TGATTTGAGCTTGCTTGCCATATA 59.111 37.500 0.00 0.00 0.00 0.86
53 54 5.360429 TGATTTGAGCTTGCTTGCCATATAA 59.640 36.000 0.00 0.00 0.00 0.98
54 55 5.657826 TTTGAGCTTGCTTGCCATATAAA 57.342 34.783 0.00 0.00 0.00 1.40
55 56 5.857471 TTGAGCTTGCTTGCCATATAAAT 57.143 34.783 0.00 0.00 0.00 1.40
56 57 5.857471 TGAGCTTGCTTGCCATATAAATT 57.143 34.783 0.00 0.00 0.00 1.82
57 58 5.593968 TGAGCTTGCTTGCCATATAAATTG 58.406 37.500 0.00 0.00 0.00 2.32
58 59 5.127519 TGAGCTTGCTTGCCATATAAATTGT 59.872 36.000 0.00 0.00 0.00 2.71
59 60 5.353938 AGCTTGCTTGCCATATAAATTGTG 58.646 37.500 0.00 0.00 0.00 3.33
60 61 5.105228 AGCTTGCTTGCCATATAAATTGTGT 60.105 36.000 0.00 0.00 0.00 3.72
61 62 5.581874 GCTTGCTTGCCATATAAATTGTGTT 59.418 36.000 0.00 0.00 0.00 3.32
62 63 6.237915 GCTTGCTTGCCATATAAATTGTGTTC 60.238 38.462 0.00 0.00 0.00 3.18
63 64 6.278172 TGCTTGCCATATAAATTGTGTTCA 57.722 33.333 0.00 0.00 0.00 3.18
64 65 6.098679 TGCTTGCCATATAAATTGTGTTCAC 58.901 36.000 0.00 0.00 0.00 3.18
65 66 5.519927 GCTTGCCATATAAATTGTGTTCACC 59.480 40.000 0.37 0.00 0.00 4.02
66 67 5.590530 TGCCATATAAATTGTGTTCACCC 57.409 39.130 0.37 0.00 0.00 4.61
67 68 5.019470 TGCCATATAAATTGTGTTCACCCA 58.981 37.500 0.37 0.00 0.00 4.51
68 69 5.660417 TGCCATATAAATTGTGTTCACCCAT 59.340 36.000 0.37 0.00 0.00 4.00
69 70 6.155910 TGCCATATAAATTGTGTTCACCCATT 59.844 34.615 0.37 0.00 0.00 3.16
70 71 7.047271 GCCATATAAATTGTGTTCACCCATTT 58.953 34.615 11.93 11.93 0.00 2.32
71 72 7.011295 GCCATATAAATTGTGTTCACCCATTTG 59.989 37.037 14.81 4.99 0.00 2.32
72 73 7.011295 CCATATAAATTGTGTTCACCCATTTGC 59.989 37.037 14.81 0.00 0.00 3.68
73 74 3.834489 AATTGTGTTCACCCATTTGCA 57.166 38.095 0.37 0.00 0.00 4.08
74 75 4.354893 AATTGTGTTCACCCATTTGCAT 57.645 36.364 0.00 0.00 0.00 3.96
75 76 5.480642 AATTGTGTTCACCCATTTGCATA 57.519 34.783 0.00 0.00 0.00 3.14
76 77 5.680594 ATTGTGTTCACCCATTTGCATAT 57.319 34.783 0.00 0.00 0.00 1.78
77 78 4.717233 TGTGTTCACCCATTTGCATATC 57.283 40.909 0.00 0.00 0.00 1.63
78 79 4.343231 TGTGTTCACCCATTTGCATATCT 58.657 39.130 0.00 0.00 0.00 1.98
79 80 5.504853 TGTGTTCACCCATTTGCATATCTA 58.495 37.500 0.00 0.00 0.00 1.98
80 81 5.589855 TGTGTTCACCCATTTGCATATCTAG 59.410 40.000 0.00 0.00 0.00 2.43
81 82 5.822519 GTGTTCACCCATTTGCATATCTAGA 59.177 40.000 0.00 0.00 0.00 2.43
82 83 6.488006 GTGTTCACCCATTTGCATATCTAGAT 59.512 38.462 10.73 10.73 0.00 1.98
83 84 7.661437 GTGTTCACCCATTTGCATATCTAGATA 59.339 37.037 14.76 14.76 0.00 1.98
84 85 8.217111 TGTTCACCCATTTGCATATCTAGATAA 58.783 33.333 16.27 2.01 0.00 1.75
85 86 9.236006 GTTCACCCATTTGCATATCTAGATAAT 57.764 33.333 16.27 4.36 0.00 1.28
86 87 9.453572 TTCACCCATTTGCATATCTAGATAATC 57.546 33.333 16.27 11.11 0.00 1.75
87 88 8.829746 TCACCCATTTGCATATCTAGATAATCT 58.170 33.333 16.27 0.00 0.00 2.40
105 106 9.289782 AGATAATCTACTTTATTCACATTGCCC 57.710 33.333 0.00 0.00 0.00 5.36
106 107 9.289782 GATAATCTACTTTATTCACATTGCCCT 57.710 33.333 0.00 0.00 0.00 5.19
109 110 9.474313 AATCTACTTTATTCACATTGCCCTAAA 57.526 29.630 0.00 0.00 0.00 1.85
110 111 8.871629 TCTACTTTATTCACATTGCCCTAAAA 57.128 30.769 0.00 0.00 0.00 1.52
111 112 9.474313 TCTACTTTATTCACATTGCCCTAAAAT 57.526 29.630 0.00 0.00 0.00 1.82
118 119 7.775053 TTCACATTGCCCTAAAATTAGAAGT 57.225 32.000 1.75 0.00 32.47 3.01
119 120 7.775053 TCACATTGCCCTAAAATTAGAAGTT 57.225 32.000 1.75 0.00 32.47 2.66
120 121 8.871629 TCACATTGCCCTAAAATTAGAAGTTA 57.128 30.769 1.75 0.00 32.47 2.24
121 122 9.303116 TCACATTGCCCTAAAATTAGAAGTTAA 57.697 29.630 1.75 0.00 32.47 2.01
122 123 9.573133 CACATTGCCCTAAAATTAGAAGTTAAG 57.427 33.333 1.75 0.00 32.47 1.85
123 124 9.309224 ACATTGCCCTAAAATTAGAAGTTAAGT 57.691 29.630 1.75 0.00 32.47 2.24
165 166 7.728847 TTATTCACCCTCATGTATTTGATCG 57.271 36.000 0.00 0.00 0.00 3.69
166 167 4.753516 TCACCCTCATGTATTTGATCGT 57.246 40.909 0.00 0.00 0.00 3.73
167 168 5.862678 TCACCCTCATGTATTTGATCGTA 57.137 39.130 0.00 0.00 0.00 3.43
168 169 6.419484 TCACCCTCATGTATTTGATCGTAT 57.581 37.500 0.00 0.00 0.00 3.06
169 170 6.826668 TCACCCTCATGTATTTGATCGTATT 58.173 36.000 0.00 0.00 0.00 1.89
170 171 6.705825 TCACCCTCATGTATTTGATCGTATTG 59.294 38.462 0.00 0.00 0.00 1.90
171 172 6.705825 CACCCTCATGTATTTGATCGTATTGA 59.294 38.462 0.00 0.00 0.00 2.57
172 173 7.388776 CACCCTCATGTATTTGATCGTATTGAT 59.611 37.037 0.00 0.00 41.06 2.57
184 185 6.221858 GATCGTATTGATCCTTTCAGCTTC 57.778 41.667 0.00 0.00 46.55 3.86
185 186 4.442706 TCGTATTGATCCTTTCAGCTTCC 58.557 43.478 0.00 0.00 35.27 3.46
186 187 4.081142 TCGTATTGATCCTTTCAGCTTCCA 60.081 41.667 0.00 0.00 35.27 3.53
187 188 4.034510 CGTATTGATCCTTTCAGCTTCCAC 59.965 45.833 0.00 0.00 35.27 4.02
188 189 2.099141 TGATCCTTTCAGCTTCCACG 57.901 50.000 0.00 0.00 0.00 4.94
189 190 1.347707 TGATCCTTTCAGCTTCCACGT 59.652 47.619 0.00 0.00 0.00 4.49
190 191 2.565391 TGATCCTTTCAGCTTCCACGTA 59.435 45.455 0.00 0.00 0.00 3.57
191 192 3.197766 TGATCCTTTCAGCTTCCACGTAT 59.802 43.478 0.00 0.00 0.00 3.06
192 193 3.247006 TCCTTTCAGCTTCCACGTATC 57.753 47.619 0.00 0.00 0.00 2.24
193 194 2.565391 TCCTTTCAGCTTCCACGTATCA 59.435 45.455 0.00 0.00 0.00 2.15
194 195 2.673368 CCTTTCAGCTTCCACGTATCAC 59.327 50.000 0.00 0.00 0.00 3.06
195 196 3.325870 CTTTCAGCTTCCACGTATCACA 58.674 45.455 0.00 0.00 0.00 3.58
196 197 3.610040 TTCAGCTTCCACGTATCACAT 57.390 42.857 0.00 0.00 0.00 3.21
197 198 3.610040 TCAGCTTCCACGTATCACATT 57.390 42.857 0.00 0.00 0.00 2.71
198 199 3.261580 TCAGCTTCCACGTATCACATTG 58.738 45.455 0.00 0.00 0.00 2.82
199 200 2.009774 AGCTTCCACGTATCACATTGC 58.990 47.619 0.00 0.00 0.00 3.56
200 201 1.737236 GCTTCCACGTATCACATTGCA 59.263 47.619 0.00 0.00 0.00 4.08
201 202 2.355756 GCTTCCACGTATCACATTGCAT 59.644 45.455 0.00 0.00 0.00 3.96
202 203 3.559655 GCTTCCACGTATCACATTGCATA 59.440 43.478 0.00 0.00 0.00 3.14
203 204 4.214119 GCTTCCACGTATCACATTGCATAT 59.786 41.667 0.00 0.00 0.00 1.78
204 205 5.408299 GCTTCCACGTATCACATTGCATATA 59.592 40.000 0.00 0.00 0.00 0.86
205 206 6.401474 GCTTCCACGTATCACATTGCATATAG 60.401 42.308 0.00 0.00 0.00 1.31
206 207 4.929211 TCCACGTATCACATTGCATATAGC 59.071 41.667 0.00 0.00 45.96 2.97
217 218 2.260844 GCATATAGCACAAGGCCTGA 57.739 50.000 5.69 0.00 46.50 3.86
218 219 1.876156 GCATATAGCACAAGGCCTGAC 59.124 52.381 5.69 0.00 46.50 3.51
219 220 2.498167 CATATAGCACAAGGCCTGACC 58.502 52.381 5.69 0.00 46.50 4.02
220 221 0.837272 TATAGCACAAGGCCTGACCC 59.163 55.000 5.69 0.00 46.50 4.46
221 222 0.916358 ATAGCACAAGGCCTGACCCT 60.916 55.000 5.69 3.51 46.50 4.34
222 223 0.252513 TAGCACAAGGCCTGACCCTA 60.253 55.000 5.69 2.40 46.50 3.53
223 224 0.916358 AGCACAAGGCCTGACCCTAT 60.916 55.000 5.69 0.00 46.50 2.57
224 225 0.464554 GCACAAGGCCTGACCCTATC 60.465 60.000 5.69 0.00 40.58 2.08
225 226 0.911769 CACAAGGCCTGACCCTATCA 59.088 55.000 5.69 0.00 40.58 2.15
226 227 1.492176 CACAAGGCCTGACCCTATCAT 59.508 52.381 5.69 0.00 40.58 2.45
227 228 2.705658 CACAAGGCCTGACCCTATCATA 59.294 50.000 5.69 0.00 40.58 2.15
228 229 3.328931 CACAAGGCCTGACCCTATCATAT 59.671 47.826 5.69 0.00 40.58 1.78
229 230 3.983410 ACAAGGCCTGACCCTATCATATT 59.017 43.478 5.69 0.00 40.58 1.28
230 231 4.202503 ACAAGGCCTGACCCTATCATATTG 60.203 45.833 5.69 0.00 40.58 1.90
231 232 3.602608 AGGCCTGACCCTATCATATTGT 58.397 45.455 3.11 0.00 40.58 2.71
232 233 3.328931 AGGCCTGACCCTATCATATTGTG 59.671 47.826 3.11 0.00 40.58 3.33
233 234 3.327757 GGCCTGACCCTATCATATTGTGA 59.672 47.826 0.00 0.00 42.06 3.58
234 235 6.235224 AGGCCTGACCCTATCATATTGTGAT 61.235 44.000 3.11 1.36 44.66 3.06
235 236 4.940046 GCCTGACCCTATCATATTGTGATG 59.060 45.833 6.19 0.00 46.85 3.07
236 237 5.494724 CCTGACCCTATCATATTGTGATGG 58.505 45.833 6.19 3.30 46.85 3.51
237 238 5.013495 CCTGACCCTATCATATTGTGATGGT 59.987 44.000 6.19 5.79 46.85 3.55
238 239 5.868454 TGACCCTATCATATTGTGATGGTG 58.132 41.667 9.30 0.22 46.85 4.17
239 240 5.606329 TGACCCTATCATATTGTGATGGTGA 59.394 40.000 9.30 0.63 46.85 4.02
240 241 5.869579 ACCCTATCATATTGTGATGGTGAC 58.130 41.667 6.19 0.00 46.85 3.67
241 242 5.369404 ACCCTATCATATTGTGATGGTGACA 59.631 40.000 6.19 0.00 46.85 3.58
242 243 6.126507 ACCCTATCATATTGTGATGGTGACAA 60.127 38.462 6.19 0.00 46.85 3.18
243 244 6.772233 CCCTATCATATTGTGATGGTGACAAA 59.228 38.462 6.19 0.00 46.85 2.83
259 260 6.478344 TGGTGACAAACTAAAAATGCATGAAC 59.522 34.615 0.00 0.00 37.44 3.18
261 262 7.171337 GGTGACAAACTAAAAATGCATGAACAT 59.829 33.333 0.00 0.00 0.00 2.71
262 263 8.005466 GTGACAAACTAAAAATGCATGAACATG 58.995 33.333 0.00 10.04 41.60 3.21
267 268 9.715121 AAACTAAAAATGCATGAACATGATTCT 57.285 25.926 17.40 8.37 41.20 2.40
277 278 6.684686 CATGAACATGATTCTTCACCAAACT 58.315 36.000 8.89 0.00 41.20 2.66
280 281 3.753272 ACATGATTCTTCACCAAACTCCG 59.247 43.478 0.00 0.00 33.85 4.63
333 334 0.817634 TTTCACAACCGCCTCCACTG 60.818 55.000 0.00 0.00 0.00 3.66
335 336 1.525995 CACAACCGCCTCCACTGTT 60.526 57.895 0.00 0.00 0.00 3.16
338 339 1.134037 ACAACCGCCTCCACTGTTTTA 60.134 47.619 0.00 0.00 0.00 1.52
357 358 2.254546 ATGCTTGTCTCGGTGTTTGA 57.745 45.000 0.00 0.00 0.00 2.69
360 361 3.734463 TGCTTGTCTCGGTGTTTGAATA 58.266 40.909 0.00 0.00 0.00 1.75
364 365 4.594123 TGTCTCGGTGTTTGAATACTCA 57.406 40.909 0.00 0.00 0.00 3.41
365 366 4.556233 TGTCTCGGTGTTTGAATACTCAG 58.444 43.478 0.00 0.00 31.69 3.35
372 373 5.233050 CGGTGTTTGAATACTCAGCTCTATG 59.767 44.000 0.00 0.00 31.69 2.23
373 374 5.007136 GGTGTTTGAATACTCAGCTCTATGC 59.993 44.000 0.00 0.00 43.29 3.14
384 385 2.770699 GCTCTATGCTGCAACCAATC 57.229 50.000 6.36 0.00 38.95 2.67
387 388 3.243002 GCTCTATGCTGCAACCAATCTTC 60.243 47.826 6.36 0.00 38.95 2.87
388 389 3.282021 TCTATGCTGCAACCAATCTTCC 58.718 45.455 6.36 0.00 0.00 3.46
389 390 1.188863 ATGCTGCAACCAATCTTCCC 58.811 50.000 6.36 0.00 0.00 3.97
390 391 0.112995 TGCTGCAACCAATCTTCCCT 59.887 50.000 0.00 0.00 0.00 4.20
391 392 1.354031 TGCTGCAACCAATCTTCCCTA 59.646 47.619 0.00 0.00 0.00 3.53
392 393 2.224992 TGCTGCAACCAATCTTCCCTAA 60.225 45.455 0.00 0.00 0.00 2.69
393 394 2.424956 GCTGCAACCAATCTTCCCTAAG 59.575 50.000 0.00 0.00 0.00 2.18
394 395 3.019564 CTGCAACCAATCTTCCCTAAGG 58.980 50.000 0.00 0.00 33.22 2.69
395 396 2.647299 TGCAACCAATCTTCCCTAAGGA 59.353 45.455 0.00 0.00 41.88 3.36
396 397 3.269381 TGCAACCAATCTTCCCTAAGGAT 59.731 43.478 0.00 0.00 43.54 3.24
397 398 4.264352 TGCAACCAATCTTCCCTAAGGATT 60.264 41.667 0.00 0.00 43.54 3.01
398 399 4.711846 GCAACCAATCTTCCCTAAGGATTT 59.288 41.667 0.00 0.00 43.54 2.17
399 400 5.187772 GCAACCAATCTTCCCTAAGGATTTT 59.812 40.000 0.00 0.00 43.54 1.82
400 401 6.295859 GCAACCAATCTTCCCTAAGGATTTTT 60.296 38.462 0.00 0.00 43.54 1.94
401 402 7.093509 GCAACCAATCTTCCCTAAGGATTTTTA 60.094 37.037 0.00 0.00 43.54 1.52
402 403 8.981659 CAACCAATCTTCCCTAAGGATTTTTAT 58.018 33.333 0.00 0.00 43.54 1.40
403 404 9.560860 AACCAATCTTCCCTAAGGATTTTTATT 57.439 29.630 0.00 0.00 43.54 1.40
404 405 9.560860 ACCAATCTTCCCTAAGGATTTTTATTT 57.439 29.630 0.00 0.00 43.54 1.40
482 483 2.037641 TCATACATTCAGCCCGGATGAG 59.962 50.000 0.73 0.00 0.00 2.90
485 486 1.281867 ACATTCAGCCCGGATGAGAAA 59.718 47.619 0.73 0.00 0.00 2.52
544 550 1.608590 CATATGGGCCGAACACCATTC 59.391 52.381 0.00 0.00 44.85 2.67
545 551 0.462937 TATGGGCCGAACACCATTCG 60.463 55.000 0.00 2.12 44.85 3.34
546 552 2.359478 GGGCCGAACACCATTCGT 60.359 61.111 8.12 0.00 40.04 3.85
548 554 1.500396 GGCCGAACACCATTCGTTC 59.500 57.895 8.12 0.00 40.04 3.95
1000 1027 4.856801 CCTCCCCATTCCACGCCG 62.857 72.222 0.00 0.00 0.00 6.46
1003 1030 2.824041 CCCCATTCCACGCCGAAG 60.824 66.667 0.00 0.00 0.00 3.79
1025 1052 1.679305 GGGAGAGGAGACGAGCACA 60.679 63.158 0.00 0.00 0.00 4.57
1033 1060 4.664677 GACGAGCACACGCACCCT 62.665 66.667 0.00 0.00 42.27 4.34
1298 1334 1.731720 GACGCTTTGCTGATTCTCCT 58.268 50.000 0.00 0.00 0.00 3.69
1300 1336 0.731417 CGCTTTGCTGATTCTCCTGG 59.269 55.000 0.00 0.00 0.00 4.45
1304 1340 2.203126 GCTGATTCTCCTGGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
1488 1527 2.666508 CGTTGTCGATCGATTCAAGGTT 59.333 45.455 22.50 0.00 39.71 3.50
1518 1557 4.021925 GACTCCAAGCGGCAGGGT 62.022 66.667 1.45 4.23 0.00 4.34
1588 1627 2.722201 CCCTCTCCGTTTAGGCGCT 61.722 63.158 7.64 0.00 40.77 5.92
1589 1628 1.389609 CCCTCTCCGTTTAGGCGCTA 61.390 60.000 7.64 0.00 40.77 4.26
1626 1680 2.363680 CTGCTGGTAGTAGGAGATGTGG 59.636 54.545 0.00 0.00 38.28 4.17
1632 1686 1.944177 AGTAGGAGATGTGGCTGTGT 58.056 50.000 0.00 0.00 0.00 3.72
1689 1743 1.402896 TATCTCTGGCTCAAGCGGGG 61.403 60.000 0.00 0.00 43.26 5.73
1726 1780 1.269831 ACAGTCTCAAGCGTGAAGGTC 60.270 52.381 3.39 0.00 31.88 3.85
1785 1839 5.105063 GCCTCATCTGTTTTTATTTCTGCC 58.895 41.667 0.00 0.00 0.00 4.85
1800 1854 1.067565 TCTGCCGAGTTCATCTGTGTC 60.068 52.381 0.00 0.00 0.00 3.67
1805 1859 3.181486 GCCGAGTTCATCTGTGTCTGATA 60.181 47.826 0.00 0.00 0.00 2.15
1834 1888 3.791245 TGGATTGCTTGTGGTTGTTTTC 58.209 40.909 0.00 0.00 0.00 2.29
1835 1889 3.450457 TGGATTGCTTGTGGTTGTTTTCT 59.550 39.130 0.00 0.00 0.00 2.52
1882 1936 4.634883 CCTGTGATGAAAGGTCTTGATGAG 59.365 45.833 0.00 0.00 0.00 2.90
1942 1996 6.015603 TCCTGTGTCATTCAATTGCATTTACA 60.016 34.615 0.00 0.00 0.00 2.41
2186 2240 5.646577 TCAGCAAAGAAGGTACTCTACTC 57.353 43.478 0.00 0.00 38.49 2.59
2292 2346 7.763985 TGTAACTTATTGAATCATCGAAGCTGA 59.236 33.333 0.00 0.00 0.00 4.26
2495 2550 6.704937 AGACTTCTGTTTAAACCCTAGTTTCG 59.295 38.462 15.59 1.30 42.67 3.46
2543 2598 2.746472 CGACCCCATCTTCTTTCATCCC 60.746 54.545 0.00 0.00 0.00 3.85
2561 2616 2.094906 TCCCGAGTGTGTTATTGAGTCG 60.095 50.000 0.00 0.00 33.29 4.18
2562 2617 2.259618 CCGAGTGTGTTATTGAGTCGG 58.740 52.381 0.00 0.00 44.07 4.79
2609 2664 4.870426 TCTTCCATATTTCAGACGAACAGC 59.130 41.667 0.00 0.00 0.00 4.40
2690 2745 6.017400 ACATTCATTAAGCACCTGTTGAAG 57.983 37.500 0.00 0.00 0.00 3.02
2747 2833 7.832503 ACAGAAAACCTGAGTTTCATTTTTG 57.167 32.000 0.00 0.00 45.54 2.44
2753 2839 3.052036 CTGAGTTTCATTTTTGGCCACG 58.948 45.455 3.88 0.00 0.00 4.94
2789 2875 5.684626 GGTGGTACGTTTCTCTATAACATCG 59.315 44.000 0.00 0.00 0.00 3.84
2800 2886 4.933330 TCTATAACATCGGACTGCAACTC 58.067 43.478 0.00 0.00 0.00 3.01
2929 3015 9.334947 CAGCAAGGATAAGAGATTTTTCAGATA 57.665 33.333 0.00 0.00 0.00 1.98
3066 3152 5.663106 ACAGATATGGACCAATGACAGTAGT 59.337 40.000 0.00 0.00 0.00 2.73
3206 3375 4.018779 TGGTAATAACCCAGGAGTTTGAGG 60.019 45.833 0.00 0.00 46.16 3.86
3212 3381 2.106684 ACCCAGGAGTTTGAGGAGTTTC 59.893 50.000 0.00 0.00 0.00 2.78
3223 3393 7.162082 AGTTTGAGGAGTTTCTTTATCACGAT 58.838 34.615 0.00 0.00 0.00 3.73
3236 3406 2.613026 TCACGATGGTGTTGTGTTCT 57.387 45.000 7.79 0.00 44.68 3.01
3923 4584 0.111061 TGGTGCTGAACAAGGCAGAT 59.889 50.000 0.00 0.00 39.22 2.90
4151 4813 6.098982 ACATTGGGTAATAGTCCTCTTCTCTG 59.901 42.308 0.00 0.00 0.00 3.35
4159 4821 4.734398 AGTCCTCTTCTCTGTAATGCTG 57.266 45.455 0.00 0.00 0.00 4.41
4163 4825 6.382570 AGTCCTCTTCTCTGTAATGCTGTAAT 59.617 38.462 0.00 0.00 0.00 1.89
4176 4838 9.613428 TGTAATGCTGTAATGCTTTAGTAATCT 57.387 29.630 0.00 0.00 34.66 2.40
4190 4852 9.825109 GCTTTAGTAATCTTTACTTCTGGAGAT 57.175 33.333 5.33 0.00 0.00 2.75
4215 4877 7.330900 TGAAGGTTGTACAGCTCTAGTATAC 57.669 40.000 9.71 0.00 30.69 1.47
4294 4967 1.302033 CAGGTGCAGGACTGGTGTC 60.302 63.158 1.01 0.00 42.22 3.67
4300 4973 1.271001 TGCAGGACTGGTGTCTTCATG 60.271 52.381 1.01 0.00 42.54 3.07
4307 4980 4.097892 GGACTGGTGTCTTCATGTTTTTGT 59.902 41.667 0.00 0.00 42.54 2.83
4326 4999 7.972832 TTTTGTATCGTAACCTGAAACTCAT 57.027 32.000 0.00 0.00 0.00 2.90
4329 5002 6.460781 TGTATCGTAACCTGAAACTCATGTT 58.539 36.000 0.00 3.39 38.46 2.71
4334 5007 4.574599 AACCTGAAACTCATGTTGAAGC 57.425 40.909 0.00 0.00 34.66 3.86
4353 5026 5.064707 TGAAGCTAATATTTGCAGGTCGTTC 59.935 40.000 21.26 15.14 0.00 3.95
4492 5165 6.071221 TCGCCGGGTAAGTAATAATGTATCAT 60.071 38.462 2.18 0.00 0.00 2.45
4494 5167 7.221452 CGCCGGGTAAGTAATAATGTATCATAC 59.779 40.741 2.18 0.00 0.00 2.39
4547 5221 4.951715 TGCAGAATTTCAATATGACTGGCT 59.048 37.500 0.00 0.00 0.00 4.75
4548 5222 5.419788 TGCAGAATTTCAATATGACTGGCTT 59.580 36.000 0.00 0.00 0.00 4.35
4691 5365 2.545526 ACAGCGACTCATTGACAACTTG 59.454 45.455 0.00 0.00 0.00 3.16
4728 5402 6.763135 TGCAAAGGTATTAACATGCAAAACAA 59.237 30.769 9.07 0.00 37.90 2.83
4729 5403 7.443575 TGCAAAGGTATTAACATGCAAAACAAT 59.556 29.630 9.07 0.00 37.90 2.71
4731 5405 8.986847 CAAAGGTATTAACATGCAAAACAATGA 58.013 29.630 0.00 0.00 0.00 2.57
4732 5406 9.553064 AAAGGTATTAACATGCAAAACAATGAA 57.447 25.926 0.00 0.00 0.00 2.57
4733 5407 9.723601 AAGGTATTAACATGCAAAACAATGAAT 57.276 25.926 0.00 0.00 0.00 2.57
4734 5408 9.723601 AGGTATTAACATGCAAAACAATGAATT 57.276 25.926 0.00 0.00 0.00 2.17
4749 5423 9.834628 AAACAATGAATTTGCATGATGAATTTC 57.165 25.926 0.00 1.89 39.03 2.17
4750 5424 8.554835 ACAATGAATTTGCATGATGAATTTCA 57.445 26.923 0.75 0.75 39.03 2.69
4751 5425 8.664798 ACAATGAATTTGCATGATGAATTTCAG 58.335 29.630 5.21 0.00 39.03 3.02
4752 5426 8.878769 CAATGAATTTGCATGATGAATTTCAGA 58.121 29.630 5.21 0.00 29.65 3.27
4753 5427 9.613428 AATGAATTTGCATGATGAATTTCAGAT 57.387 25.926 5.21 0.00 29.65 2.90
4755 5429 9.524106 TGAATTTGCATGATGAATTTCAGATAC 57.476 29.630 5.21 0.00 0.00 2.24
4756 5430 9.524106 GAATTTGCATGATGAATTTCAGATACA 57.476 29.630 5.21 3.65 0.00 2.29
4758 5432 8.865590 TTTGCATGATGAATTTCAGATACATG 57.134 30.769 20.95 20.95 34.32 3.21
4759 5433 7.811117 TGCATGATGAATTTCAGATACATGA 57.189 32.000 25.06 15.64 33.73 3.07
4760 5434 8.404107 TGCATGATGAATTTCAGATACATGAT 57.596 30.769 25.06 3.97 33.73 2.45
4761 5435 8.296713 TGCATGATGAATTTCAGATACATGATG 58.703 33.333 25.06 12.81 36.32 3.07
4762 5436 8.512138 GCATGATGAATTTCAGATACATGATGA 58.488 33.333 25.06 0.00 35.68 2.92
4771 5445 8.908786 TTTCAGATACATGATGAATACCTTCC 57.091 34.615 0.00 0.00 33.26 3.46
4781 5455 0.988832 AATACCTTCCTCCACCGCAA 59.011 50.000 0.00 0.00 0.00 4.85
4803 5477 7.470900 GCAAAGTGAAACCAAATGAATTTCAA 58.529 30.769 2.68 0.00 42.36 2.69
4832 5506 4.280425 TGGTGTTCATTTGCTTGCATCTTA 59.720 37.500 0.00 0.00 0.00 2.10
4835 5509 6.035327 GGTGTTCATTTGCTTGCATCTTAATC 59.965 38.462 0.00 0.00 0.00 1.75
5123 5798 1.320555 CGTCAGTCGCAACTTATTCCG 59.679 52.381 0.00 0.00 31.71 4.30
5255 5931 2.738846 ACACAATGTTCAGAGATGCGTC 59.261 45.455 0.00 0.00 0.00 5.19
5310 5986 2.802816 CGTAGCCTATGCATCTTTGACC 59.197 50.000 0.19 0.00 41.13 4.02
5329 6006 4.098960 TGACCACTGTTCGGAATAGATACC 59.901 45.833 19.57 7.74 0.00 2.73
5338 6015 2.969950 CGGAATAGATACCTGGTGGGAA 59.030 50.000 10.23 0.00 38.76 3.97
5567 6255 2.019987 CGAATCGTGCGCTTAAAATCG 58.980 47.619 9.73 8.27 0.00 3.34
5578 6266 2.286025 GCTTAAAATCGCGTCCCGTAAT 59.714 45.455 5.77 0.00 38.35 1.89
5579 6267 3.490526 GCTTAAAATCGCGTCCCGTAATA 59.509 43.478 5.77 0.00 38.35 0.98
5580 6268 4.151157 GCTTAAAATCGCGTCCCGTAATAT 59.849 41.667 5.77 0.00 38.35 1.28
5581 6269 5.345741 GCTTAAAATCGCGTCCCGTAATATA 59.654 40.000 5.77 0.00 38.35 0.86
5582 6270 6.035327 GCTTAAAATCGCGTCCCGTAATATAT 59.965 38.462 5.77 0.00 38.35 0.86
5583 6271 7.220683 GCTTAAAATCGCGTCCCGTAATATATA 59.779 37.037 5.77 0.00 38.35 0.86
5584 6272 8.978564 TTAAAATCGCGTCCCGTAATATATAA 57.021 30.769 5.77 0.00 38.35 0.98
5585 6273 9.585099 TTAAAATCGCGTCCCGTAATATATAAT 57.415 29.630 5.77 0.00 38.35 1.28
5587 6275 9.754382 AAAATCGCGTCCCGTAATATATAATAT 57.246 29.630 5.77 0.00 38.35 1.28
5588 6276 9.754382 AAATCGCGTCCCGTAATATATAATATT 57.246 29.630 5.77 0.00 38.35 1.28
5589 6277 8.961294 ATCGCGTCCCGTAATATATAATATTC 57.039 34.615 5.77 0.00 38.35 1.75
5590 6278 7.362662 TCGCGTCCCGTAATATATAATATTCC 58.637 38.462 5.77 0.00 38.35 3.01
5591 6279 6.583806 CGCGTCCCGTAATATATAATATTCCC 59.416 42.308 0.00 0.00 0.00 3.97
5592 6280 6.583806 GCGTCCCGTAATATATAATATTCCCG 59.416 42.308 0.00 1.58 0.00 5.14
5593 6281 7.651808 CGTCCCGTAATATATAATATTCCCGT 58.348 38.462 0.00 0.00 0.00 5.28
5594 6282 8.783093 CGTCCCGTAATATATAATATTCCCGTA 58.217 37.037 0.00 0.00 0.00 4.02
5774 6464 0.613260 TCCGTCCATCACAGAAAGGG 59.387 55.000 0.00 0.00 0.00 3.95
5803 6502 1.227556 GTGCACCAGACAGACGGTT 60.228 57.895 5.22 0.00 31.41 4.44
5898 6597 4.948080 ACGACCCGACCCCAACCT 62.948 66.667 0.00 0.00 0.00 3.50
6123 6841 3.199190 AGACGAGGCGAGCGAGAG 61.199 66.667 4.61 0.00 0.00 3.20
6124 6842 4.244802 GACGAGGCGAGCGAGAGG 62.245 72.222 4.61 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.436175 TGCTAGGCAACAATCTTATTAGCA 58.564 37.500 0.00 0.00 39.70 3.49
1 2 6.566197 ATGCTAGGCAACAATCTTATTAGC 57.434 37.500 0.00 0.00 43.62 3.09
2 3 8.839310 AGTATGCTAGGCAACAATCTTATTAG 57.161 34.615 0.00 0.00 43.62 1.73
3 4 8.651389 AGAGTATGCTAGGCAACAATCTTATTA 58.349 33.333 0.00 0.00 43.62 0.98
4 5 7.443575 CAGAGTATGCTAGGCAACAATCTTATT 59.556 37.037 0.00 0.00 43.62 1.40
5 6 6.933521 CAGAGTATGCTAGGCAACAATCTTAT 59.066 38.462 0.00 0.00 43.62 1.73
6 7 6.098266 TCAGAGTATGCTAGGCAACAATCTTA 59.902 38.462 0.00 0.00 43.62 2.10
7 8 5.104776 TCAGAGTATGCTAGGCAACAATCTT 60.105 40.000 0.00 0.00 43.62 2.40
8 9 4.406972 TCAGAGTATGCTAGGCAACAATCT 59.593 41.667 0.00 0.00 43.62 2.40
9 10 4.697514 TCAGAGTATGCTAGGCAACAATC 58.302 43.478 0.00 0.00 43.62 2.67
10 11 4.760530 TCAGAGTATGCTAGGCAACAAT 57.239 40.909 0.00 0.00 43.62 2.71
11 12 4.760530 ATCAGAGTATGCTAGGCAACAA 57.239 40.909 0.00 0.00 43.62 2.83
12 13 4.760530 AATCAGAGTATGCTAGGCAACA 57.239 40.909 0.00 0.00 43.62 3.33
13 14 5.118990 TCAAATCAGAGTATGCTAGGCAAC 58.881 41.667 0.00 0.00 43.62 4.17
14 15 5.357742 TCAAATCAGAGTATGCTAGGCAA 57.642 39.130 0.00 0.00 43.62 4.52
15 16 4.741837 GCTCAAATCAGAGTATGCTAGGCA 60.742 45.833 0.00 0.00 39.37 4.75
16 17 3.745458 GCTCAAATCAGAGTATGCTAGGC 59.255 47.826 0.00 0.00 37.94 3.93
17 18 5.212532 AGCTCAAATCAGAGTATGCTAGG 57.787 43.478 0.00 0.00 37.94 3.02
18 19 5.050227 GCAAGCTCAAATCAGAGTATGCTAG 60.050 44.000 12.53 0.00 41.66 3.42
19 20 4.813161 GCAAGCTCAAATCAGAGTATGCTA 59.187 41.667 12.53 0.00 41.66 3.49
20 21 3.626670 GCAAGCTCAAATCAGAGTATGCT 59.373 43.478 12.53 0.00 41.66 3.79
21 22 3.626670 AGCAAGCTCAAATCAGAGTATGC 59.373 43.478 12.13 12.13 43.41 3.14
22 23 5.570344 CAAGCAAGCTCAAATCAGAGTATG 58.430 41.667 0.00 0.00 37.94 2.39
23 24 4.096081 GCAAGCAAGCTCAAATCAGAGTAT 59.904 41.667 0.00 0.00 37.94 2.12
24 25 3.438087 GCAAGCAAGCTCAAATCAGAGTA 59.562 43.478 0.00 0.00 37.94 2.59
25 26 2.228343 GCAAGCAAGCTCAAATCAGAGT 59.772 45.455 0.00 0.00 37.94 3.24
26 27 2.415625 GGCAAGCAAGCTCAAATCAGAG 60.416 50.000 0.00 0.00 38.68 3.35
27 28 1.542915 GGCAAGCAAGCTCAAATCAGA 59.457 47.619 0.00 0.00 34.17 3.27
28 29 1.271379 TGGCAAGCAAGCTCAAATCAG 59.729 47.619 0.00 0.00 34.17 2.90
29 30 1.330234 TGGCAAGCAAGCTCAAATCA 58.670 45.000 0.00 0.00 34.17 2.57
30 31 2.667473 ATGGCAAGCAAGCTCAAATC 57.333 45.000 0.00 0.00 34.17 2.17
31 32 5.857471 TTATATGGCAAGCAAGCTCAAAT 57.143 34.783 0.00 0.00 34.17 2.32
32 33 5.657826 TTTATATGGCAAGCAAGCTCAAA 57.342 34.783 0.00 0.00 34.17 2.69
33 34 5.857471 ATTTATATGGCAAGCAAGCTCAA 57.143 34.783 0.00 0.00 34.17 3.02
34 35 5.127519 ACAATTTATATGGCAAGCAAGCTCA 59.872 36.000 0.00 0.00 34.17 4.26
35 36 5.461078 CACAATTTATATGGCAAGCAAGCTC 59.539 40.000 0.00 0.00 34.17 4.09
36 37 5.105228 ACACAATTTATATGGCAAGCAAGCT 60.105 36.000 0.00 0.00 34.17 3.74
37 38 5.111293 ACACAATTTATATGGCAAGCAAGC 58.889 37.500 0.00 0.00 0.00 4.01
38 39 6.812656 TGAACACAATTTATATGGCAAGCAAG 59.187 34.615 0.00 0.00 0.00 4.01
39 40 6.589523 GTGAACACAATTTATATGGCAAGCAA 59.410 34.615 0.00 0.00 0.00 3.91
40 41 6.098679 GTGAACACAATTTATATGGCAAGCA 58.901 36.000 0.00 0.00 0.00 3.91
41 42 5.519927 GGTGAACACAATTTATATGGCAAGC 59.480 40.000 7.25 0.00 0.00 4.01
42 43 6.042143 GGGTGAACACAATTTATATGGCAAG 58.958 40.000 7.25 0.00 0.00 4.01
43 44 5.481824 TGGGTGAACACAATTTATATGGCAA 59.518 36.000 7.25 0.00 0.00 4.52
44 45 5.019470 TGGGTGAACACAATTTATATGGCA 58.981 37.500 7.25 0.00 0.00 4.92
45 46 5.590530 TGGGTGAACACAATTTATATGGC 57.409 39.130 7.25 0.00 0.00 4.40
46 47 7.011295 GCAAATGGGTGAACACAATTTATATGG 59.989 37.037 13.42 6.47 31.89 2.74
47 48 7.548427 TGCAAATGGGTGAACACAATTTATATG 59.452 33.333 13.42 7.20 31.89 1.78
48 49 7.619050 TGCAAATGGGTGAACACAATTTATAT 58.381 30.769 13.42 0.00 31.89 0.86
49 50 6.997655 TGCAAATGGGTGAACACAATTTATA 58.002 32.000 13.42 6.87 31.89 0.98
50 51 5.862845 TGCAAATGGGTGAACACAATTTAT 58.137 33.333 13.42 0.00 31.89 1.40
51 52 5.282055 TGCAAATGGGTGAACACAATTTA 57.718 34.783 13.42 2.77 31.89 1.40
52 53 4.148128 TGCAAATGGGTGAACACAATTT 57.852 36.364 7.25 8.95 32.71 1.82
53 54 3.834489 TGCAAATGGGTGAACACAATT 57.166 38.095 7.25 3.84 30.29 2.32
54 55 5.422970 AGATATGCAAATGGGTGAACACAAT 59.577 36.000 7.25 0.00 30.29 2.71
55 56 4.771577 AGATATGCAAATGGGTGAACACAA 59.228 37.500 7.25 0.00 30.29 3.33
56 57 4.343231 AGATATGCAAATGGGTGAACACA 58.657 39.130 7.25 0.00 0.00 3.72
57 58 4.989279 AGATATGCAAATGGGTGAACAC 57.011 40.909 0.00 0.00 0.00 3.32
58 59 6.000246 TCTAGATATGCAAATGGGTGAACA 58.000 37.500 0.00 0.00 0.00 3.18
59 60 8.621532 TTATCTAGATATGCAAATGGGTGAAC 57.378 34.615 13.22 0.00 0.00 3.18
60 61 9.453572 GATTATCTAGATATGCAAATGGGTGAA 57.546 33.333 13.22 0.00 0.00 3.18
61 62 8.829746 AGATTATCTAGATATGCAAATGGGTGA 58.170 33.333 13.22 0.00 0.00 4.02
79 80 9.289782 GGGCAATGTGAATAAAGTAGATTATCT 57.710 33.333 0.00 0.00 0.00 1.98
80 81 9.289782 AGGGCAATGTGAATAAAGTAGATTATC 57.710 33.333 0.00 0.00 0.00 1.75
83 84 9.474313 TTTAGGGCAATGTGAATAAAGTAGATT 57.526 29.630 0.00 0.00 0.00 2.40
84 85 9.474313 TTTTAGGGCAATGTGAATAAAGTAGAT 57.526 29.630 0.00 0.00 0.00 1.98
85 86 8.871629 TTTTAGGGCAATGTGAATAAAGTAGA 57.128 30.769 0.00 0.00 0.00 2.59
92 93 9.474313 ACTTCTAATTTTAGGGCAATGTGAATA 57.526 29.630 0.00 0.00 0.00 1.75
93 94 8.366359 ACTTCTAATTTTAGGGCAATGTGAAT 57.634 30.769 0.00 0.00 0.00 2.57
94 95 7.775053 ACTTCTAATTTTAGGGCAATGTGAA 57.225 32.000 0.00 0.00 0.00 3.18
95 96 7.775053 AACTTCTAATTTTAGGGCAATGTGA 57.225 32.000 0.00 0.00 0.00 3.58
96 97 9.573133 CTTAACTTCTAATTTTAGGGCAATGTG 57.427 33.333 0.00 0.00 0.00 3.21
97 98 9.309224 ACTTAACTTCTAATTTTAGGGCAATGT 57.691 29.630 0.00 0.00 0.00 2.71
139 140 8.620416 CGATCAAATACATGAGGGTGAATAAAA 58.380 33.333 0.00 0.00 31.76 1.52
140 141 7.773224 ACGATCAAATACATGAGGGTGAATAAA 59.227 33.333 0.00 0.00 31.76 1.40
141 142 7.279615 ACGATCAAATACATGAGGGTGAATAA 58.720 34.615 0.00 0.00 31.76 1.40
142 143 6.826668 ACGATCAAATACATGAGGGTGAATA 58.173 36.000 0.00 0.00 31.76 1.75
143 144 5.684704 ACGATCAAATACATGAGGGTGAAT 58.315 37.500 0.00 0.00 31.76 2.57
144 145 5.097742 ACGATCAAATACATGAGGGTGAA 57.902 39.130 0.00 0.00 31.76 3.18
145 146 4.753516 ACGATCAAATACATGAGGGTGA 57.246 40.909 0.00 0.00 31.76 4.02
146 147 6.705825 TCAATACGATCAAATACATGAGGGTG 59.294 38.462 0.00 0.00 31.76 4.61
147 148 6.826668 TCAATACGATCAAATACATGAGGGT 58.173 36.000 0.00 0.00 31.76 4.34
148 149 7.912056 ATCAATACGATCAAATACATGAGGG 57.088 36.000 0.00 0.00 31.76 4.30
162 163 5.059833 GGAAGCTGAAAGGATCAATACGAT 58.940 41.667 0.00 0.00 37.67 3.73
163 164 4.081142 TGGAAGCTGAAAGGATCAATACGA 60.081 41.667 0.00 0.00 37.67 3.43
164 165 4.034510 GTGGAAGCTGAAAGGATCAATACG 59.965 45.833 0.00 0.00 37.67 3.06
165 166 4.034510 CGTGGAAGCTGAAAGGATCAATAC 59.965 45.833 0.00 0.00 37.67 1.89
166 167 4.191544 CGTGGAAGCTGAAAGGATCAATA 58.808 43.478 0.00 0.00 37.67 1.90
167 168 3.012518 CGTGGAAGCTGAAAGGATCAAT 58.987 45.455 0.00 0.00 37.67 2.57
168 169 2.224523 ACGTGGAAGCTGAAAGGATCAA 60.225 45.455 0.00 0.00 37.67 2.57
169 170 1.347707 ACGTGGAAGCTGAAAGGATCA 59.652 47.619 0.00 0.00 36.38 2.92
170 171 2.100605 ACGTGGAAGCTGAAAGGATC 57.899 50.000 0.00 0.00 0.00 3.36
171 172 3.197766 TGATACGTGGAAGCTGAAAGGAT 59.802 43.478 0.00 0.00 0.00 3.24
172 173 2.565391 TGATACGTGGAAGCTGAAAGGA 59.435 45.455 0.00 0.00 0.00 3.36
173 174 2.673368 GTGATACGTGGAAGCTGAAAGG 59.327 50.000 0.00 0.00 0.00 3.11
174 175 3.325870 TGTGATACGTGGAAGCTGAAAG 58.674 45.455 0.00 0.00 0.00 2.62
175 176 3.394674 TGTGATACGTGGAAGCTGAAA 57.605 42.857 0.00 0.00 0.00 2.69
176 177 3.610040 ATGTGATACGTGGAAGCTGAA 57.390 42.857 0.00 0.00 0.00 3.02
177 178 3.261580 CAATGTGATACGTGGAAGCTGA 58.738 45.455 0.00 0.00 0.00 4.26
178 179 2.223112 GCAATGTGATACGTGGAAGCTG 60.223 50.000 0.00 0.00 0.00 4.24
179 180 2.009774 GCAATGTGATACGTGGAAGCT 58.990 47.619 0.00 0.00 0.00 3.74
180 181 1.737236 TGCAATGTGATACGTGGAAGC 59.263 47.619 0.00 0.00 0.00 3.86
181 182 5.929697 ATATGCAATGTGATACGTGGAAG 57.070 39.130 0.00 0.00 0.00 3.46
182 183 5.408299 GCTATATGCAATGTGATACGTGGAA 59.592 40.000 0.00 0.00 42.31 3.53
183 184 4.929211 GCTATATGCAATGTGATACGTGGA 59.071 41.667 0.00 0.00 42.31 4.02
184 185 5.208624 GCTATATGCAATGTGATACGTGG 57.791 43.478 0.00 0.00 42.31 4.94
198 199 1.876156 GTCAGGCCTTGTGCTATATGC 59.124 52.381 0.00 0.00 40.92 3.14
199 200 2.498167 GGTCAGGCCTTGTGCTATATG 58.502 52.381 0.00 0.00 40.92 1.78
200 201 1.421646 GGGTCAGGCCTTGTGCTATAT 59.578 52.381 0.00 0.00 40.92 0.86
201 202 0.837272 GGGTCAGGCCTTGTGCTATA 59.163 55.000 0.00 0.00 40.92 1.31
202 203 0.916358 AGGGTCAGGCCTTGTGCTAT 60.916 55.000 0.00 0.00 40.92 2.97
203 204 0.252513 TAGGGTCAGGCCTTGTGCTA 60.253 55.000 0.00 0.00 40.92 3.49
204 205 0.916358 ATAGGGTCAGGCCTTGTGCT 60.916 55.000 0.00 0.00 40.92 4.40
205 206 0.464554 GATAGGGTCAGGCCTTGTGC 60.465 60.000 0.00 0.00 37.43 4.57
206 207 0.911769 TGATAGGGTCAGGCCTTGTG 59.088 55.000 0.00 0.00 37.43 3.33
207 208 1.898863 ATGATAGGGTCAGGCCTTGT 58.101 50.000 0.00 0.00 40.92 3.16
208 209 4.202503 ACAATATGATAGGGTCAGGCCTTG 60.203 45.833 0.00 0.00 40.92 3.61
209 210 3.983410 ACAATATGATAGGGTCAGGCCTT 59.017 43.478 0.00 0.00 40.92 4.35
210 211 3.328931 CACAATATGATAGGGTCAGGCCT 59.671 47.826 0.00 0.00 40.92 5.19
211 212 3.327757 TCACAATATGATAGGGTCAGGCC 59.672 47.826 0.00 0.00 40.92 5.19
212 213 4.623932 TCACAATATGATAGGGTCAGGC 57.376 45.455 0.00 0.00 40.92 4.85
213 214 5.013495 ACCATCACAATATGATAGGGTCAGG 59.987 44.000 8.98 0.00 46.96 3.86
214 215 5.936372 CACCATCACAATATGATAGGGTCAG 59.064 44.000 8.98 0.00 46.96 3.51
215 216 5.606329 TCACCATCACAATATGATAGGGTCA 59.394 40.000 8.98 0.00 46.96 4.02
216 217 5.934625 GTCACCATCACAATATGATAGGGTC 59.065 44.000 8.98 0.00 46.96 4.46
217 218 5.369404 TGTCACCATCACAATATGATAGGGT 59.631 40.000 8.98 3.06 46.96 4.34
218 219 5.868454 TGTCACCATCACAATATGATAGGG 58.132 41.667 8.98 2.57 46.96 3.53
219 220 7.500227 AGTTTGTCACCATCACAATATGATAGG 59.500 37.037 0.00 0.00 46.96 2.57
220 221 8.442632 AGTTTGTCACCATCACAATATGATAG 57.557 34.615 0.00 0.00 46.96 2.08
221 222 9.898152 TTAGTTTGTCACCATCACAATATGATA 57.102 29.630 0.00 0.00 46.96 2.15
223 224 8.628630 TTTAGTTTGTCACCATCACAATATGA 57.371 30.769 0.00 0.00 43.13 2.15
224 225 9.689976 TTTTTAGTTTGTCACCATCACAATATG 57.310 29.630 0.00 0.00 33.76 1.78
226 227 9.689976 CATTTTTAGTTTGTCACCATCACAATA 57.310 29.630 0.00 0.00 33.76 1.90
227 228 7.171337 GCATTTTTAGTTTGTCACCATCACAAT 59.829 33.333 0.00 0.00 33.76 2.71
228 229 6.478344 GCATTTTTAGTTTGTCACCATCACAA 59.522 34.615 0.00 0.00 31.76 3.33
229 230 5.982516 GCATTTTTAGTTTGTCACCATCACA 59.017 36.000 0.00 0.00 0.00 3.58
230 231 5.982516 TGCATTTTTAGTTTGTCACCATCAC 59.017 36.000 0.00 0.00 0.00 3.06
231 232 6.154203 TGCATTTTTAGTTTGTCACCATCA 57.846 33.333 0.00 0.00 0.00 3.07
232 233 6.867816 TCATGCATTTTTAGTTTGTCACCATC 59.132 34.615 0.00 0.00 0.00 3.51
233 234 6.757237 TCATGCATTTTTAGTTTGTCACCAT 58.243 32.000 0.00 0.00 0.00 3.55
234 235 6.154203 TCATGCATTTTTAGTTTGTCACCA 57.846 33.333 0.00 0.00 0.00 4.17
235 236 6.478344 TGTTCATGCATTTTTAGTTTGTCACC 59.522 34.615 0.00 0.00 0.00 4.02
236 237 7.462109 TGTTCATGCATTTTTAGTTTGTCAC 57.538 32.000 0.00 0.00 0.00 3.67
237 238 7.924947 TCATGTTCATGCATTTTTAGTTTGTCA 59.075 29.630 0.00 0.00 0.00 3.58
238 239 8.296799 TCATGTTCATGCATTTTTAGTTTGTC 57.703 30.769 0.00 0.00 0.00 3.18
239 240 8.836268 ATCATGTTCATGCATTTTTAGTTTGT 57.164 26.923 0.00 0.00 0.00 2.83
240 241 9.749490 GAATCATGTTCATGCATTTTTAGTTTG 57.251 29.630 0.00 0.00 0.00 2.93
241 242 9.715121 AGAATCATGTTCATGCATTTTTAGTTT 57.285 25.926 0.00 0.00 0.00 2.66
242 243 9.715121 AAGAATCATGTTCATGCATTTTTAGTT 57.285 25.926 0.00 0.00 0.00 2.24
243 244 9.362539 GAAGAATCATGTTCATGCATTTTTAGT 57.637 29.630 0.00 0.00 0.00 2.24
249 250 5.186215 TGGTGAAGAATCATGTTCATGCATT 59.814 36.000 0.00 8.40 40.50 3.56
253 254 6.684686 AGTTTGGTGAAGAATCATGTTCATG 58.315 36.000 6.46 6.46 40.50 3.07
255 256 5.241506 GGAGTTTGGTGAAGAATCATGTTCA 59.758 40.000 9.64 2.44 38.01 3.18
259 260 3.753272 ACGGAGTTTGGTGAAGAATCATG 59.247 43.478 0.00 0.00 37.78 3.07
261 262 3.138304 CACGGAGTTTGGTGAAGAATCA 58.862 45.455 0.00 0.00 41.61 2.57
262 263 2.095718 GCACGGAGTTTGGTGAAGAATC 60.096 50.000 0.00 0.00 41.61 2.52
267 268 1.403679 CTTTGCACGGAGTTTGGTGAA 59.596 47.619 0.00 0.00 41.61 3.18
314 315 0.817634 CAGTGGAGGCGGTTGTGAAA 60.818 55.000 0.00 0.00 0.00 2.69
333 334 4.483476 AACACCGAGACAAGCATAAAAC 57.517 40.909 0.00 0.00 0.00 2.43
335 336 4.130857 TCAAACACCGAGACAAGCATAAA 58.869 39.130 0.00 0.00 0.00 1.40
338 339 2.254546 TCAAACACCGAGACAAGCAT 57.745 45.000 0.00 0.00 0.00 3.79
365 366 2.295885 AGATTGGTTGCAGCATAGAGC 58.704 47.619 2.05 0.00 46.19 4.09
372 373 2.128771 TAGGGAAGATTGGTTGCAGC 57.871 50.000 0.00 0.00 0.00 5.25
373 374 3.019564 CCTTAGGGAAGATTGGTTGCAG 58.980 50.000 0.00 0.00 34.25 4.41
375 376 3.366052 TCCTTAGGGAAGATTGGTTGC 57.634 47.619 0.00 0.00 38.93 4.17
376 377 6.857437 AAAATCCTTAGGGAAGATTGGTTG 57.143 37.500 0.00 0.00 45.78 3.77
377 378 9.560860 AATAAAAATCCTTAGGGAAGATTGGTT 57.439 29.630 0.00 0.00 45.78 3.67
378 379 9.560860 AAATAAAAATCCTTAGGGAAGATTGGT 57.439 29.630 0.00 0.00 45.78 3.67
406 407 9.535878 ACAAACAAACAAAAACTTACTTTCTCA 57.464 25.926 0.00 0.00 0.00 3.27
411 412 9.210329 CCCTAACAAACAAACAAAAACTTACTT 57.790 29.630 0.00 0.00 0.00 2.24
412 413 7.820386 CCCCTAACAAACAAACAAAAACTTACT 59.180 33.333 0.00 0.00 0.00 2.24
413 414 7.818446 TCCCCTAACAAACAAACAAAAACTTAC 59.182 33.333 0.00 0.00 0.00 2.34
414 415 7.904205 TCCCCTAACAAACAAACAAAAACTTA 58.096 30.769 0.00 0.00 0.00 2.24
415 416 6.770542 TCCCCTAACAAACAAACAAAAACTT 58.229 32.000 0.00 0.00 0.00 2.66
416 417 6.361768 TCCCCTAACAAACAAACAAAAACT 57.638 33.333 0.00 0.00 0.00 2.66
417 418 5.064198 GCTCCCCTAACAAACAAACAAAAAC 59.936 40.000 0.00 0.00 0.00 2.43
418 419 5.179533 GCTCCCCTAACAAACAAACAAAAA 58.820 37.500 0.00 0.00 0.00 1.94
419 420 4.383226 GGCTCCCCTAACAAACAAACAAAA 60.383 41.667 0.00 0.00 0.00 2.44
420 421 3.133183 GGCTCCCCTAACAAACAAACAAA 59.867 43.478 0.00 0.00 0.00 2.83
421 422 2.696187 GGCTCCCCTAACAAACAAACAA 59.304 45.455 0.00 0.00 0.00 2.83
422 423 2.312390 GGCTCCCCTAACAAACAAACA 58.688 47.619 0.00 0.00 0.00 2.83
423 424 2.312390 TGGCTCCCCTAACAAACAAAC 58.688 47.619 0.00 0.00 0.00 2.93
424 425 2.757894 TGGCTCCCCTAACAAACAAA 57.242 45.000 0.00 0.00 0.00 2.83
425 426 2.990740 ATGGCTCCCCTAACAAACAA 57.009 45.000 0.00 0.00 0.00 2.83
426 427 2.990740 AATGGCTCCCCTAACAAACA 57.009 45.000 0.00 0.00 0.00 2.83
427 428 4.081862 GGTAAAATGGCTCCCCTAACAAAC 60.082 45.833 0.00 0.00 0.00 2.93
428 429 4.090819 GGTAAAATGGCTCCCCTAACAAA 58.909 43.478 0.00 0.00 0.00 2.83
429 430 3.076182 TGGTAAAATGGCTCCCCTAACAA 59.924 43.478 0.00 0.00 0.00 2.83
430 431 2.650322 TGGTAAAATGGCTCCCCTAACA 59.350 45.455 0.00 0.00 0.00 2.41
497 498 2.616524 AGGCCTGTTAGGTCAGTTGTA 58.383 47.619 3.11 0.00 44.17 2.41
544 550 1.193650 TGCTCGGAATTGTTTCGAACG 59.806 47.619 0.00 0.00 32.28 3.95
545 551 2.571206 GTGCTCGGAATTGTTTCGAAC 58.429 47.619 0.00 0.00 32.28 3.95
546 552 1.533731 GGTGCTCGGAATTGTTTCGAA 59.466 47.619 0.00 0.00 32.28 3.71
548 554 0.179225 CGGTGCTCGGAATTGTTTCG 60.179 55.000 0.00 0.00 32.28 3.46
549 555 3.676091 CGGTGCTCGGAATTGTTTC 57.324 52.632 0.00 0.00 34.75 2.78
1000 1027 0.753848 CGTCTCCTCTCCCCCTCTTC 60.754 65.000 0.00 0.00 0.00 2.87
1003 1030 1.152839 CTCGTCTCCTCTCCCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
1013 1040 3.106407 GTGCGTGTGCTCGTCTCC 61.106 66.667 0.00 0.00 43.34 3.71
1025 1052 1.227853 GAAACCTCACAGGGTGCGT 60.228 57.895 0.00 0.00 30.80 5.24
1033 1060 1.065345 TGGACAAACGGAAACCTCACA 60.065 47.619 0.00 0.00 0.00 3.58
1110 1146 1.144057 GCGATCTCCATCCACGGTT 59.856 57.895 0.00 0.00 0.00 4.44
1431 1467 2.449031 ATTCACCAGCGGCAACTCGA 62.449 55.000 1.45 0.00 0.00 4.04
1433 1469 1.503542 CATTCACCAGCGGCAACTC 59.496 57.895 1.45 0.00 0.00 3.01
1434 1470 1.973281 CCATTCACCAGCGGCAACT 60.973 57.895 1.45 0.00 0.00 3.16
1435 1471 2.568090 CCATTCACCAGCGGCAAC 59.432 61.111 1.45 0.00 0.00 4.17
1488 1527 1.377202 GGAGTCAGCAATCGCCCAA 60.377 57.895 0.00 0.00 39.83 4.12
1518 1557 3.060020 CTCGCCGAAGCCGAGGTAA 62.060 63.158 3.09 0.00 36.58 2.85
1588 1627 1.135373 GCAGCACAGACTAGCGAACTA 60.135 52.381 0.00 0.00 35.48 2.24
1589 1628 0.389166 GCAGCACAGACTAGCGAACT 60.389 55.000 0.00 0.00 35.48 3.01
1626 1680 1.032014 AACCATCAACACCACACAGC 58.968 50.000 0.00 0.00 0.00 4.40
1632 1686 2.217750 CAGACGAAACCATCAACACCA 58.782 47.619 0.00 0.00 0.00 4.17
1671 1725 2.739996 CCCCGCTTGAGCCAGAGAT 61.740 63.158 0.00 0.00 37.91 2.75
1689 1743 2.503356 ACTGTCCTGGGTGATCTCATTC 59.497 50.000 0.00 0.00 0.00 2.67
1726 1780 1.401552 CATCATAACAAGGTGCCACCG 59.598 52.381 8.52 0.00 44.90 4.94
1785 1839 6.753744 TCAAATATCAGACACAGATGAACTCG 59.246 38.462 0.00 0.00 0.00 4.18
1800 1854 5.067413 ACAAGCAATCCAGCTCAAATATCAG 59.933 40.000 0.00 0.00 45.89 2.90
1805 1859 2.232941 CCACAAGCAATCCAGCTCAAAT 59.767 45.455 0.00 0.00 45.89 2.32
1835 1889 3.818210 GGATCGAAGCTACTCAGATCTGA 59.182 47.826 23.75 23.75 38.15 3.27
1882 1936 6.422776 TCTAATAAACTTACAGCAAGCAGC 57.577 37.500 0.00 0.00 46.19 5.25
1942 1996 2.260822 ACCATGTTAGTGTGAGAGGCT 58.739 47.619 0.00 0.00 0.00 4.58
2186 2240 5.929992 ACTGAAAATGGAAAGATTGCACATG 59.070 36.000 0.00 0.00 32.41 3.21
2292 2346 6.377996 TGAATACATGCTCTAATTGGCAAAGT 59.622 34.615 3.01 0.00 41.90 2.66
2543 2598 2.942710 ACCGACTCAATAACACACTCG 58.057 47.619 0.00 0.00 0.00 4.18
2561 2616 8.931385 AATAAATGCAATGACATGAAAGTACC 57.069 30.769 0.00 0.00 0.00 3.34
2562 2617 9.793252 AGAATAAATGCAATGACATGAAAGTAC 57.207 29.630 0.00 0.00 0.00 2.73
2753 2839 3.275999 ACGTACCACCAAAATAGATGGC 58.724 45.455 0.00 0.00 41.89 4.40
2789 2875 1.745653 GGCCAATTAGAGTTGCAGTCC 59.254 52.381 0.00 0.00 0.00 3.85
2800 2886 4.107622 CTGCATTTCGAAAGGCCAATTAG 58.892 43.478 35.90 25.08 44.38 1.73
2997 3083 7.276438 ACAAAAGAAAGAGCTGATGTTTTCAAC 59.724 33.333 0.00 0.00 32.78 3.18
2998 3084 7.322664 ACAAAAGAAAGAGCTGATGTTTTCAA 58.677 30.769 0.00 0.00 32.78 2.69
2999 3085 6.866480 ACAAAAGAAAGAGCTGATGTTTTCA 58.134 32.000 0.00 0.00 33.19 2.69
3066 3152 0.250467 GAAGCTGGGCAGAACAGACA 60.250 55.000 0.00 0.00 38.20 3.41
3206 3375 6.073222 ACAACACCATCGTGATAAAGAAACTC 60.073 38.462 0.00 0.00 43.14 3.01
3212 3381 5.179368 AGAACACAACACCATCGTGATAAAG 59.821 40.000 0.00 0.00 43.14 1.85
3223 3393 4.013728 AGCAAACTAAGAACACAACACCA 58.986 39.130 0.00 0.00 0.00 4.17
3236 3406 6.491745 TGTCCCATTGTATTTCAGCAAACTAA 59.508 34.615 0.00 0.00 0.00 2.24
3363 3534 3.118261 TGTCAGCCAGAAATCCTGTATCC 60.118 47.826 0.00 0.00 41.33 2.59
3366 3537 4.574674 AATGTCAGCCAGAAATCCTGTA 57.425 40.909 0.00 0.00 41.33 2.74
3376 3547 7.318141 AGATTTTTATGTCAAATGTCAGCCAG 58.682 34.615 0.00 0.00 0.00 4.85
3482 3667 4.161189 TCCTTTCATCAGATCCTGACTGAC 59.839 45.833 0.00 0.00 43.63 3.51
3923 4584 1.486310 ACCTGCTGAGTGTCAACTTGA 59.514 47.619 0.00 0.00 36.52 3.02
4163 4825 8.812972 TCTCCAGAAGTAAAGATTACTAAAGCA 58.187 33.333 3.39 0.00 0.00 3.91
4176 4838 6.601332 ACAACCTTCAATCTCCAGAAGTAAA 58.399 36.000 0.00 0.00 39.61 2.01
4190 4852 6.852420 ATACTAGAGCTGTACAACCTTCAA 57.148 37.500 0.00 0.00 0.00 2.69
4231 4893 6.899393 TTGGTCTTCAAAAATATGCAGACT 57.101 33.333 6.96 0.00 41.46 3.24
4243 4905 7.397892 TTCACACTACATTTTGGTCTTCAAA 57.602 32.000 0.00 0.00 42.98 2.69
4282 4952 2.847327 ACATGAAGACACCAGTCCTG 57.153 50.000 0.00 0.00 46.15 3.86
4294 4967 7.802738 TCAGGTTACGATACAAAAACATGAAG 58.197 34.615 0.00 0.00 39.02 3.02
4300 4973 7.632721 TGAGTTTCAGGTTACGATACAAAAAC 58.367 34.615 0.00 0.00 0.00 2.43
4326 4999 5.163764 CGACCTGCAAATATTAGCTTCAACA 60.164 40.000 0.00 0.00 0.00 3.33
4329 5002 4.513442 ACGACCTGCAAATATTAGCTTCA 58.487 39.130 0.00 0.00 0.00 3.02
4334 5007 6.907212 GTCATTGAACGACCTGCAAATATTAG 59.093 38.462 0.00 0.00 0.00 1.73
4353 5026 6.448852 TGATTCATTCACAGGTTTGTCATTG 58.551 36.000 0.00 0.00 34.62 2.82
4547 5221 1.102154 CCTACGCATGGAAATGGCAA 58.898 50.000 0.00 0.00 0.00 4.52
4548 5222 0.034574 ACCTACGCATGGAAATGGCA 60.035 50.000 0.00 0.00 0.00 4.92
4729 5403 9.524106 GTATCTGAAATTCATCATGCAAATTCA 57.476 29.630 0.00 0.00 0.00 2.57
4732 5406 9.476202 CATGTATCTGAAATTCATCATGCAAAT 57.524 29.630 0.00 0.00 0.00 2.32
4733 5407 8.688151 TCATGTATCTGAAATTCATCATGCAAA 58.312 29.630 17.15 6.61 33.74 3.68
4734 5408 8.228035 TCATGTATCTGAAATTCATCATGCAA 57.772 30.769 17.15 6.72 33.74 4.08
4735 5409 7.811117 TCATGTATCTGAAATTCATCATGCA 57.189 32.000 17.15 13.04 33.74 3.96
4736 5410 8.512138 TCATCATGTATCTGAAATTCATCATGC 58.488 33.333 17.15 9.37 33.74 4.06
4745 5419 9.512588 GGAAGGTATTCATCATGTATCTGAAAT 57.487 33.333 0.00 0.00 37.15 2.17
4746 5420 8.717717 AGGAAGGTATTCATCATGTATCTGAAA 58.282 33.333 0.00 0.00 37.15 2.69
4749 5423 7.102346 GGAGGAAGGTATTCATCATGTATCTG 58.898 42.308 5.20 0.00 45.80 2.90
4750 5424 6.789457 TGGAGGAAGGTATTCATCATGTATCT 59.211 38.462 5.20 0.00 45.80 1.98
4751 5425 6.876257 GTGGAGGAAGGTATTCATCATGTATC 59.124 42.308 5.20 0.00 45.80 2.24
4752 5426 6.240002 GGTGGAGGAAGGTATTCATCATGTAT 60.240 42.308 5.20 0.00 45.80 2.29
4753 5427 5.071788 GGTGGAGGAAGGTATTCATCATGTA 59.928 44.000 5.20 0.00 45.80 2.29
4754 5428 4.141390 GGTGGAGGAAGGTATTCATCATGT 60.141 45.833 5.20 0.00 45.80 3.21
4755 5429 4.392940 GGTGGAGGAAGGTATTCATCATG 58.607 47.826 5.20 0.00 45.80 3.07
4756 5430 3.071602 CGGTGGAGGAAGGTATTCATCAT 59.928 47.826 5.20 0.00 45.80 2.45
4757 5431 2.434336 CGGTGGAGGAAGGTATTCATCA 59.566 50.000 5.20 0.00 45.80 3.07
4758 5432 2.807108 GCGGTGGAGGAAGGTATTCATC 60.807 54.545 0.00 0.00 43.80 2.92
4759 5433 1.141053 GCGGTGGAGGAAGGTATTCAT 59.859 52.381 0.00 0.00 37.15 2.57
4760 5434 0.539986 GCGGTGGAGGAAGGTATTCA 59.460 55.000 0.00 0.00 37.15 2.57
4761 5435 0.539986 TGCGGTGGAGGAAGGTATTC 59.460 55.000 0.00 0.00 34.46 1.75
4762 5436 0.988832 TTGCGGTGGAGGAAGGTATT 59.011 50.000 0.00 0.00 0.00 1.89
4763 5437 0.988832 TTTGCGGTGGAGGAAGGTAT 59.011 50.000 0.00 0.00 0.00 2.73
4764 5438 0.323629 CTTTGCGGTGGAGGAAGGTA 59.676 55.000 0.00 0.00 0.00 3.08
4765 5439 1.073199 CTTTGCGGTGGAGGAAGGT 59.927 57.895 0.00 0.00 0.00 3.50
4771 5445 0.310854 GGTTTCACTTTGCGGTGGAG 59.689 55.000 4.83 0.00 37.75 3.86
4803 5477 4.931002 GCAAGCAAATGAACACCATGTATT 59.069 37.500 0.00 0.00 35.24 1.89
4832 5506 4.530875 CAGAAAGGAGGCAGTTATGGATT 58.469 43.478 0.00 0.00 0.00 3.01
4835 5509 2.019984 GCAGAAAGGAGGCAGTTATGG 58.980 52.381 0.00 0.00 0.00 2.74
4966 5641 1.252215 TTGTCGATGCTGTACCCGGA 61.252 55.000 0.73 0.00 0.00 5.14
5123 5798 0.317020 GGCAGACGAACAACACTTGC 60.317 55.000 0.00 0.00 0.00 4.01
5255 5931 2.878406 TGAAGACAAAAGGAAAGAGCCG 59.122 45.455 0.00 0.00 0.00 5.52
5310 5986 4.099573 ACCAGGTATCTATTCCGAACAGTG 59.900 45.833 0.00 0.00 0.00 3.66
5329 6006 5.726980 TTCATCTTGAATTTTCCCACCAG 57.273 39.130 0.00 0.00 30.26 4.00
5382 6059 1.863267 TGTTTCTGCCAAAATTGCCG 58.137 45.000 0.00 0.00 0.00 5.69
5403 6080 0.896923 TGAAACTGGCCAATCCATGC 59.103 50.000 7.01 0.00 45.50 4.06
5612 6300 8.970293 GGTTGCGCCGTTTATTTTATTTATTAT 58.030 29.630 4.18 0.00 0.00 1.28
5613 6301 7.972277 TGGTTGCGCCGTTTATTTTATTTATTA 59.028 29.630 4.18 0.00 41.21 0.98
5614 6302 6.812160 TGGTTGCGCCGTTTATTTTATTTATT 59.188 30.769 4.18 0.00 41.21 1.40
5676 6364 2.106131 ATATTCGCCGACGCTGCA 59.894 55.556 0.00 0.00 39.84 4.41
5784 6479 1.966901 AACCGTCTGTCTGGTGCACA 61.967 55.000 20.43 3.92 38.82 4.57
5787 6482 0.317479 ACTAACCGTCTGTCTGGTGC 59.683 55.000 0.00 0.00 38.82 5.01
5803 6502 2.831742 CCGGCCGCTGGTAGACTA 60.832 66.667 22.85 0.00 0.00 2.59
5898 6597 3.307906 CGGGTCGGGTGAGGTTGA 61.308 66.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.