Multiple sequence alignment - TraesCS6B01G159600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G159600 chr6B 100.000 2612 0 0 1 2612 163231093 163228482 0.000000e+00 4824.0
1 TraesCS6B01G159600 chr6D 93.372 2082 80 23 460 2494 86143482 86141412 0.000000e+00 3027.0
2 TraesCS6B01G159600 chr6D 92.708 384 23 2 52 434 86143854 86143475 1.370000e-152 549.0
3 TraesCS6B01G159600 chr6D 95.604 91 3 1 2523 2612 86141413 86141323 7.530000e-31 145.0
4 TraesCS6B01G159600 chr6D 100.000 32 0 0 1 32 86143884 86143853 2.810000e-05 60.2
5 TraesCS6B01G159600 chr6A 91.747 2072 85 32 459 2462 103759534 103757481 0.000000e+00 2800.0
6 TraesCS6B01G159600 chr6A 93.135 437 18 4 1 434 103759953 103759526 4.740000e-177 630.0
7 TraesCS6B01G159600 chr5A 91.831 355 27 2 53 405 323084410 323084764 6.490000e-136 494.0
8 TraesCS6B01G159600 chr4A 91.453 351 28 2 49 397 113486402 113486752 5.060000e-132 481.0
9 TraesCS6B01G159600 chr7D 80.597 402 54 18 1053 1448 547681351 547680968 3.290000e-74 289.0
10 TraesCS6B01G159600 chr7A 79.800 401 56 16 1053 1448 630869780 630870160 4.280000e-68 268.0
11 TraesCS6B01G159600 chr7B 79.800 401 53 20 1053 1448 590842642 590842265 1.540000e-67 267.0
12 TraesCS6B01G159600 chr2D 83.696 92 11 3 1528 1619 606198801 606198714 1.670000e-12 84.2
13 TraesCS6B01G159600 chr1B 81.522 92 13 2 1528 1619 641140312 641140399 3.610000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G159600 chr6B 163228482 163231093 2611 True 4824.0 4824 100.000 1 2612 1 chr6B.!!$R1 2611
1 TraesCS6B01G159600 chr6D 86141323 86143884 2561 True 945.3 3027 95.421 1 2612 4 chr6D.!!$R1 2611
2 TraesCS6B01G159600 chr6A 103757481 103759953 2472 True 1715.0 2800 92.441 1 2462 2 chr6A.!!$R1 2461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 673 1.227556 GTGCACCAGACAGACGGTT 60.228 57.895 5.22 0.0 31.41 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2122 0.248843 GACACTCTTCCAGGAGCCAG 59.751 60.0 0.0 0.0 36.87 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 2.738846 ACACAATGTTCAGAGATGCGTC 59.261 45.455 0.00 0.00 0.00 5.19
159 161 2.802816 CGTAGCCTATGCATCTTTGACC 59.197 50.000 0.19 0.00 41.13 4.02
178 180 4.098960 TGACCACTGTTCGGAATAGATACC 59.901 45.833 19.57 7.74 0.00 2.73
187 189 2.969950 CGGAATAGATACCTGGTGGGAA 59.030 50.000 10.23 0.00 38.76 3.97
262 264 2.546778 GCAGAAACATGCATGGATTGG 58.453 47.619 29.41 16.64 45.77 3.16
263 265 2.546778 CAGAAACATGCATGGATTGGC 58.453 47.619 29.41 13.14 0.00 4.52
264 266 1.483415 AGAAACATGCATGGATTGGCC 59.517 47.619 29.41 12.53 37.10 5.36
416 428 2.019987 CGAATCGTGCGCTTAAAATCG 58.980 47.619 9.73 8.27 0.00 3.34
427 439 2.286025 GCTTAAAATCGCGTCCCGTAAT 59.714 45.455 5.77 0.00 38.35 1.89
428 440 3.490526 GCTTAAAATCGCGTCCCGTAATA 59.509 43.478 5.77 0.00 38.35 0.98
429 441 4.151157 GCTTAAAATCGCGTCCCGTAATAT 59.849 41.667 5.77 0.00 38.35 1.28
430 442 5.345741 GCTTAAAATCGCGTCCCGTAATATA 59.654 40.000 5.77 0.00 38.35 0.86
431 443 6.035327 GCTTAAAATCGCGTCCCGTAATATAT 59.965 38.462 5.77 0.00 38.35 0.86
432 444 7.220683 GCTTAAAATCGCGTCCCGTAATATATA 59.779 37.037 5.77 0.00 38.35 0.86
433 445 8.978564 TTAAAATCGCGTCCCGTAATATATAA 57.021 30.769 5.77 0.00 38.35 0.98
434 446 9.585099 TTAAAATCGCGTCCCGTAATATATAAT 57.415 29.630 5.77 0.00 38.35 1.28
436 448 9.754382 AAAATCGCGTCCCGTAATATATAATAT 57.246 29.630 5.77 0.00 38.35 1.28
437 449 9.754382 AAATCGCGTCCCGTAATATATAATATT 57.246 29.630 5.77 0.00 38.35 1.28
438 450 8.961294 ATCGCGTCCCGTAATATATAATATTC 57.039 34.615 5.77 0.00 38.35 1.75
439 451 7.362662 TCGCGTCCCGTAATATATAATATTCC 58.637 38.462 5.77 0.00 38.35 3.01
440 452 6.583806 CGCGTCCCGTAATATATAATATTCCC 59.416 42.308 0.00 0.00 0.00 3.97
441 453 6.583806 GCGTCCCGTAATATATAATATTCCCG 59.416 42.308 0.00 1.58 0.00 5.14
442 454 7.651808 CGTCCCGTAATATATAATATTCCCGT 58.348 38.462 0.00 0.00 0.00 5.28
443 455 8.783093 CGTCCCGTAATATATAATATTCCCGTA 58.217 37.037 0.00 0.00 0.00 4.02
652 673 1.227556 GTGCACCAGACAGACGGTT 60.228 57.895 5.22 0.00 31.41 4.44
747 768 4.948080 ACGACCCGACCCCAACCT 62.948 66.667 0.00 0.00 0.00 3.50
972 1012 3.199190 AGACGAGGCGAGCGAGAG 61.199 66.667 4.61 0.00 0.00 3.20
973 1013 4.244802 GACGAGGCGAGCGAGAGG 62.245 72.222 4.61 0.00 0.00 3.69
1646 1714 1.949847 CTTCGGATGCGTCACCTCCT 61.950 60.000 6.49 0.00 0.00 3.69
1655 1725 1.081277 GTCACCTCCTCCCCTTCCT 59.919 63.158 0.00 0.00 0.00 3.36
1735 1809 7.338710 TCGATAGAATTGGATTTTTGGTCTCT 58.661 34.615 0.00 0.00 46.15 3.10
1798 1872 8.978874 TGCCTTATGTGATAATGTGAATAAGT 57.021 30.769 0.00 0.00 0.00 2.24
1878 1952 7.307632 CCATCTTTCTCTGTTCTTACTTGTGTG 60.308 40.741 0.00 0.00 0.00 3.82
1887 1961 4.955811 TCTTACTTGTGTGTCATCCACT 57.044 40.909 0.00 0.00 44.81 4.00
1897 1980 2.360726 CATCCACTGGCTGCTGCA 60.361 61.111 17.89 0.88 41.91 4.41
1925 2008 5.518128 GCTGCTGTCGATATAGTATGGATTG 59.482 44.000 0.00 0.00 0.00 2.67
1930 2013 9.457110 GCTGTCGATATAGTATGGATTGATTAG 57.543 37.037 0.00 0.00 0.00 1.73
1971 2060 8.635765 AGAAAGCAAGAGGAAATTTACATGTA 57.364 30.769 0.08 0.08 0.00 2.29
1972 2061 9.077885 AGAAAGCAAGAGGAAATTTACATGTAA 57.922 29.630 14.35 14.35 0.00 2.41
1973 2062 9.129209 GAAAGCAAGAGGAAATTTACATGTAAC 57.871 33.333 17.85 6.60 0.00 2.50
1974 2063 8.409358 AAGCAAGAGGAAATTTACATGTAACT 57.591 30.769 17.85 10.16 0.00 2.24
1975 2064 8.409358 AGCAAGAGGAAATTTACATGTAACTT 57.591 30.769 17.85 15.57 0.00 2.66
1976 2065 8.299570 AGCAAGAGGAAATTTACATGTAACTTG 58.700 33.333 24.51 24.51 34.83 3.16
1977 2066 8.082242 GCAAGAGGAAATTTACATGTAACTTGT 58.918 33.333 26.75 16.66 34.41 3.16
1987 2076 3.315191 ACATGTAACTTGTGTGAACTGGC 59.685 43.478 0.00 0.00 0.00 4.85
1995 2084 2.653726 TGTGTGAACTGGCTCATTTGT 58.346 42.857 0.00 0.00 0.00 2.83
2019 2108 1.738350 CTGAGATTGTTGGCTGCTGAG 59.262 52.381 0.00 0.00 0.00 3.35
2033 2122 1.201181 TGCTGAGCGAGAGAGAAGTTC 59.799 52.381 0.00 0.00 0.00 3.01
2094 2188 1.743391 GCATTATGCAGCATGGCCA 59.257 52.632 18.81 8.56 44.26 5.36
2134 2228 0.172578 CTTCCTGCCGACACGATACA 59.827 55.000 0.00 0.00 0.00 2.29
2135 2229 0.604073 TTCCTGCCGACACGATACAA 59.396 50.000 0.00 0.00 0.00 2.41
2152 2246 0.179217 CAACATCGATGTGCACCACG 60.179 55.000 30.57 21.10 41.61 4.94
2193 2287 5.072736 TGGATCATAATGCTCCTCTGATGTT 59.927 40.000 0.00 0.00 33.97 2.71
2199 2293 7.994911 TCATAATGCTCCTCTGATGTTTGTATT 59.005 33.333 0.00 0.00 0.00 1.89
2222 2316 4.694037 TCTCTTGAGCAAATCATCACACTG 59.306 41.667 0.00 0.00 37.89 3.66
2236 2335 3.636679 TCACACTGGAAACCCAAAATCA 58.363 40.909 0.00 0.00 32.40 2.57
2256 2355 2.516460 CAGCAGATGCAGGGCTCC 60.516 66.667 7.68 0.00 45.16 4.70
2278 2377 1.448540 CTGGATCTCCGTGTGTGGC 60.449 63.158 0.00 0.00 39.43 5.01
2284 2383 4.308458 TCCGTGTGTGGCTTCCCG 62.308 66.667 0.00 0.00 0.00 5.14
2291 2390 1.227823 TGTGGCTTCCCGTTCTGTG 60.228 57.895 0.00 0.00 0.00 3.66
2293 2392 3.056328 GGCTTCCCGTTCTGTGGC 61.056 66.667 0.00 0.00 0.00 5.01
2298 2397 3.052082 CCCGTTCTGTGGCTGCTG 61.052 66.667 0.00 0.00 0.00 4.41
2309 2408 3.187414 GCTGCTGCTGTCTCTCGC 61.187 66.667 8.53 0.00 36.03 5.03
2313 2412 2.505777 CTGCTGTCTCTCGCGGTG 60.506 66.667 6.13 0.00 0.00 4.94
2340 2442 2.158856 TCCATGGTGCTAATCTCTGCTG 60.159 50.000 12.58 0.00 0.00 4.41
2353 2455 0.681733 TCTGCTGAGTGTTGAGGTCC 59.318 55.000 0.00 0.00 0.00 4.46
2389 2491 3.826729 ACTGTTCTTTGGGCAAGGATTAC 59.173 43.478 0.00 0.00 32.64 1.89
2396 2498 1.272425 TGGGCAAGGATTACCACAAGG 60.272 52.381 0.00 0.00 31.25 3.61
2488 2591 0.618458 TGCGCCTTCTCCATTAAGGT 59.382 50.000 4.18 0.00 44.56 3.50
2494 2597 4.201920 CGCCTTCTCCATTAAGGTAAAAGC 60.202 45.833 3.97 0.00 44.56 3.51
2495 2598 4.705023 GCCTTCTCCATTAAGGTAAAAGCA 59.295 41.667 3.97 0.00 44.56 3.91
2496 2599 5.163612 GCCTTCTCCATTAAGGTAAAAGCAG 60.164 44.000 3.97 0.00 44.56 4.24
2497 2600 6.180472 CCTTCTCCATTAAGGTAAAAGCAGA 58.820 40.000 0.00 0.00 38.98 4.26
2498 2601 6.317391 CCTTCTCCATTAAGGTAAAAGCAGAG 59.683 42.308 0.00 0.00 38.98 3.35
2499 2602 5.186198 TCTCCATTAAGGTAAAAGCAGAGC 58.814 41.667 0.00 0.00 39.02 4.09
2500 2603 4.917385 TCCATTAAGGTAAAAGCAGAGCA 58.083 39.130 0.00 0.00 39.02 4.26
2501 2604 4.700213 TCCATTAAGGTAAAAGCAGAGCAC 59.300 41.667 0.00 0.00 39.02 4.40
2502 2605 4.142381 CCATTAAGGTAAAAGCAGAGCACC 60.142 45.833 0.00 0.00 0.00 5.01
2503 2606 1.523758 AAGGTAAAAGCAGAGCACCG 58.476 50.000 0.00 0.00 34.36 4.94
2504 2607 0.321653 AGGTAAAAGCAGAGCACCGG 60.322 55.000 0.00 0.00 34.36 5.28
2505 2608 1.502190 GTAAAAGCAGAGCACCGGC 59.498 57.895 0.00 0.00 41.61 6.13
2515 2618 4.038080 GCACCGGCGGAAACAAGG 62.038 66.667 35.78 12.97 0.00 3.61
2516 2619 2.281208 CACCGGCGGAAACAAGGA 60.281 61.111 35.78 0.00 0.00 3.36
2517 2620 1.894756 CACCGGCGGAAACAAGGAA 60.895 57.895 35.78 0.00 0.00 3.36
2518 2621 1.152922 ACCGGCGGAAACAAGGAAA 60.153 52.632 35.78 0.00 0.00 3.13
2519 2622 0.752376 ACCGGCGGAAACAAGGAAAA 60.752 50.000 35.78 0.00 0.00 2.29
2520 2623 0.601057 CCGGCGGAAACAAGGAAAAT 59.399 50.000 24.41 0.00 0.00 1.82
2521 2624 1.402325 CCGGCGGAAACAAGGAAAATC 60.402 52.381 24.41 0.00 0.00 2.17
2522 2625 1.268352 CGGCGGAAACAAGGAAAATCA 59.732 47.619 0.00 0.00 0.00 2.57
2523 2626 2.668279 CGGCGGAAACAAGGAAAATCAG 60.668 50.000 0.00 0.00 0.00 2.90
2557 2660 7.321153 AGCTAACTTTATAACGGCGATCATAT 58.679 34.615 16.62 9.02 0.00 1.78
2567 2670 0.749454 GCGATCATATGGGGGATGCC 60.749 60.000 2.13 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 2.878406 TGAAGACAAAAGGAAAGAGCCG 59.122 45.455 0.00 0.00 0.00 5.52
159 161 4.099573 ACCAGGTATCTATTCCGAACAGTG 59.900 45.833 0.00 0.00 0.00 3.66
178 180 5.726980 TTCATCTTGAATTTTCCCACCAG 57.273 39.130 0.00 0.00 30.26 4.00
231 233 1.863267 TGTTTCTGCCAAAATTGCCG 58.137 45.000 0.00 0.00 0.00 5.69
252 254 0.896923 TGAAACTGGCCAATCCATGC 59.103 50.000 7.01 0.00 45.50 4.06
259 261 3.118482 TCTGCAATTTTGAAACTGGCCAA 60.118 39.130 7.01 0.00 0.00 4.52
260 262 2.433604 TCTGCAATTTTGAAACTGGCCA 59.566 40.909 4.71 4.71 0.00 5.36
261 263 3.110447 TCTGCAATTTTGAAACTGGCC 57.890 42.857 0.00 0.00 0.00 5.36
262 264 5.236911 TCATTTCTGCAATTTTGAAACTGGC 59.763 36.000 0.66 0.00 33.36 4.85
263 265 6.847956 TCATTTCTGCAATTTTGAAACTGG 57.152 33.333 0.66 0.00 33.36 4.00
264 266 7.912383 ACTTCATTTCTGCAATTTTGAAACTG 58.088 30.769 0.66 2.42 33.36 3.16
265 267 8.496707 AACTTCATTTCTGCAATTTTGAAACT 57.503 26.923 0.66 0.00 33.36 2.66
461 473 8.970293 GGTTGCGCCGTTTATTTTATTTATTAT 58.030 29.630 4.18 0.00 0.00 1.28
462 474 7.972277 TGGTTGCGCCGTTTATTTTATTTATTA 59.028 29.630 4.18 0.00 41.21 0.98
463 475 6.812160 TGGTTGCGCCGTTTATTTTATTTATT 59.188 30.769 4.18 0.00 41.21 1.40
525 537 2.106131 ATATTCGCCGACGCTGCA 59.894 55.556 0.00 0.00 39.84 4.41
633 650 1.966901 AACCGTCTGTCTGGTGCACA 61.967 55.000 20.43 3.92 38.82 4.57
636 653 0.317479 ACTAACCGTCTGTCTGGTGC 59.683 55.000 0.00 0.00 38.82 5.01
652 673 2.831742 CCGGCCGCTGGTAGACTA 60.832 66.667 22.85 0.00 0.00 2.59
747 768 3.307906 CGGGTCGGGTGAGGTTGA 61.308 66.667 0.00 0.00 0.00 3.18
1305 1364 1.153489 CGTGCTGCTGTGGCTAGAT 60.153 57.895 0.00 0.00 39.59 1.98
1351 1413 2.435059 GAAGAGGACGCTGGTGGC 60.435 66.667 0.00 0.00 37.64 5.01
1655 1725 4.124351 CGCGTTAGTCCGGGAGCA 62.124 66.667 0.00 0.00 42.68 4.26
1735 1809 6.880484 TCAGAACTTGAGTGGTAGTAAAACA 58.120 36.000 0.00 0.00 0.00 2.83
1878 1952 2.404995 GCAGCAGCCAGTGGATGAC 61.405 63.158 31.20 20.65 42.34 3.06
1900 1983 4.336280 TCCATACTATATCGACAGCAGCT 58.664 43.478 0.00 0.00 0.00 4.24
1904 1987 9.457110 CTAATCAATCCATACTATATCGACAGC 57.543 37.037 0.00 0.00 0.00 4.40
1925 2008 7.658179 TTCTTCCATTACGCATCATCTAATC 57.342 36.000 0.00 0.00 0.00 1.75
1930 2013 4.035558 TGCTTTCTTCCATTACGCATCATC 59.964 41.667 0.00 0.00 0.00 2.92
1931 2014 3.947196 TGCTTTCTTCCATTACGCATCAT 59.053 39.130 0.00 0.00 0.00 2.45
1932 2015 3.342719 TGCTTTCTTCCATTACGCATCA 58.657 40.909 0.00 0.00 0.00 3.07
1971 2060 2.418368 TGAGCCAGTTCACACAAGTT 57.582 45.000 0.00 0.00 0.00 2.66
1972 2061 2.645838 ATGAGCCAGTTCACACAAGT 57.354 45.000 0.00 0.00 0.00 3.16
1973 2062 3.067180 ACAAATGAGCCAGTTCACACAAG 59.933 43.478 0.00 0.00 0.00 3.16
1974 2063 3.023119 ACAAATGAGCCAGTTCACACAA 58.977 40.909 0.00 0.00 0.00 3.33
1975 2064 2.653726 ACAAATGAGCCAGTTCACACA 58.346 42.857 0.00 0.00 0.00 3.72
1976 2065 3.715628 AACAAATGAGCCAGTTCACAC 57.284 42.857 0.00 0.00 0.00 3.82
1977 2066 4.402155 AGAAAACAAATGAGCCAGTTCACA 59.598 37.500 0.00 0.00 0.00 3.58
1987 2076 6.145048 GCCAACAATCTCAGAAAACAAATGAG 59.855 38.462 0.00 0.00 41.47 2.90
1995 2084 3.005050 CAGCAGCCAACAATCTCAGAAAA 59.995 43.478 0.00 0.00 0.00 2.29
2019 2108 0.530288 AGCCAGAACTTCTCTCTCGC 59.470 55.000 0.00 0.00 29.07 5.03
2023 2112 1.206849 CCAGGAGCCAGAACTTCTCTC 59.793 57.143 0.00 0.00 29.07 3.20
2033 2122 0.248843 GACACTCTTCCAGGAGCCAG 59.751 60.000 0.00 0.00 36.87 4.85
2094 2188 1.043022 CCACAGGCCAAAAGCTTTCT 58.957 50.000 13.10 1.93 43.05 2.52
2134 2228 0.320334 TCGTGGTGCACATCGATGTT 60.320 50.000 28.04 11.20 39.39 2.71
2135 2229 0.737367 CTCGTGGTGCACATCGATGT 60.737 55.000 25.18 25.18 42.84 3.06
2179 2273 5.188555 AGAGAATACAAACATCAGAGGAGCA 59.811 40.000 0.00 0.00 0.00 4.26
2193 2287 7.391275 TGTGATGATTTGCTCAAGAGAATACAA 59.609 33.333 0.32 0.00 37.44 2.41
2199 2293 4.694037 CAGTGTGATGATTTGCTCAAGAGA 59.306 41.667 0.32 0.00 37.44 3.10
2222 2316 2.224257 TGCTGCTTGATTTTGGGTTTCC 60.224 45.455 0.00 0.00 0.00 3.13
2256 2355 1.226802 CACACGGAGATCCAGAGCG 60.227 63.158 0.00 0.00 35.14 5.03
2269 2368 2.590575 AACGGGAAGCCACACACG 60.591 61.111 0.00 0.00 0.00 4.49
2278 2377 2.328099 GCAGCCACAGAACGGGAAG 61.328 63.158 0.00 0.00 0.00 3.46
2284 2383 1.849976 GACAGCAGCAGCCACAGAAC 61.850 60.000 0.00 0.00 43.56 3.01
2291 2390 2.508887 CGAGAGACAGCAGCAGCC 60.509 66.667 0.00 0.00 43.56 4.85
2293 2392 2.879933 CGCGAGAGACAGCAGCAG 60.880 66.667 0.00 0.00 0.00 4.24
2298 2397 3.997064 ATGCACCGCGAGAGACAGC 62.997 63.158 8.23 0.73 0.00 4.40
2309 2408 0.311790 GCACCATGGATAATGCACCG 59.688 55.000 21.47 0.00 38.00 4.94
2313 2412 5.123502 CAGAGATTAGCACCATGGATAATGC 59.876 44.000 21.47 17.93 38.39 3.56
2340 2442 2.492484 AGTACATCGGACCTCAACACTC 59.508 50.000 0.00 0.00 0.00 3.51
2353 2455 6.967767 CCAAAGAACAGTAGTAGAGTACATCG 59.032 42.308 0.00 0.00 0.00 3.84
2389 2491 0.469917 ACGATATCCTGCCCTTGTGG 59.530 55.000 0.00 0.00 37.09 4.17
2396 2498 2.213499 CCACTTTGACGATATCCTGCC 58.787 52.381 0.00 0.00 0.00 4.85
2474 2577 6.183360 GCTCTGCTTTTACCTTAATGGAGAAG 60.183 42.308 0.00 0.00 39.71 2.85
2488 2591 2.032634 CGCCGGTGCTCTGCTTTTA 61.033 57.895 0.00 0.00 34.43 1.52
2494 2597 3.423154 GTTTCCGCCGGTGCTCTG 61.423 66.667 10.27 0.00 34.43 3.35
2495 2598 3.469863 TTGTTTCCGCCGGTGCTCT 62.470 57.895 10.27 0.00 34.43 4.09
2496 2599 2.966309 CTTGTTTCCGCCGGTGCTC 61.966 63.158 10.27 0.00 34.43 4.26
2497 2600 2.978010 CTTGTTTCCGCCGGTGCT 60.978 61.111 10.27 0.00 34.43 4.40
2498 2601 4.038080 CCTTGTTTCCGCCGGTGC 62.038 66.667 10.27 0.00 0.00 5.01
2499 2602 1.448922 TTTCCTTGTTTCCGCCGGTG 61.449 55.000 8.42 8.42 0.00 4.94
2500 2603 0.752376 TTTTCCTTGTTTCCGCCGGT 60.752 50.000 1.63 0.00 0.00 5.28
2501 2604 0.601057 ATTTTCCTTGTTTCCGCCGG 59.399 50.000 0.00 0.00 0.00 6.13
2502 2605 1.268352 TGATTTTCCTTGTTTCCGCCG 59.732 47.619 0.00 0.00 0.00 6.46
2503 2606 2.556622 TCTGATTTTCCTTGTTTCCGCC 59.443 45.455 0.00 0.00 0.00 6.13
2504 2607 3.915437 TCTGATTTTCCTTGTTTCCGC 57.085 42.857 0.00 0.00 0.00 5.54
2505 2608 5.181690 TGTTCTGATTTTCCTTGTTTCCG 57.818 39.130 0.00 0.00 0.00 4.30
2506 2609 6.159293 GGATGTTCTGATTTTCCTTGTTTCC 58.841 40.000 0.00 0.00 0.00 3.13
2507 2610 5.858581 CGGATGTTCTGATTTTCCTTGTTTC 59.141 40.000 0.00 0.00 0.00 2.78
2508 2611 5.534654 TCGGATGTTCTGATTTTCCTTGTTT 59.465 36.000 0.00 0.00 0.00 2.83
2509 2612 5.070001 TCGGATGTTCTGATTTTCCTTGTT 58.930 37.500 0.00 0.00 0.00 2.83
2510 2613 4.651778 TCGGATGTTCTGATTTTCCTTGT 58.348 39.130 0.00 0.00 0.00 3.16
2511 2614 4.437930 GCTCGGATGTTCTGATTTTCCTTG 60.438 45.833 0.00 0.00 30.24 3.61
2512 2615 3.691609 GCTCGGATGTTCTGATTTTCCTT 59.308 43.478 0.00 0.00 30.24 3.36
2513 2616 3.054802 AGCTCGGATGTTCTGATTTTCCT 60.055 43.478 0.00 0.00 30.24 3.36
2514 2617 3.274288 AGCTCGGATGTTCTGATTTTCC 58.726 45.455 0.00 0.00 30.24 3.13
2515 2618 5.582665 AGTTAGCTCGGATGTTCTGATTTTC 59.417 40.000 0.00 0.00 30.24 2.29
2516 2619 5.491982 AGTTAGCTCGGATGTTCTGATTTT 58.508 37.500 0.00 0.00 30.24 1.82
2517 2620 5.091261 AGTTAGCTCGGATGTTCTGATTT 57.909 39.130 0.00 0.00 30.24 2.17
2518 2621 4.744795 AGTTAGCTCGGATGTTCTGATT 57.255 40.909 0.00 0.00 30.24 2.57
2519 2622 4.744795 AAGTTAGCTCGGATGTTCTGAT 57.255 40.909 0.00 0.00 30.24 2.90
2520 2623 4.537135 AAAGTTAGCTCGGATGTTCTGA 57.463 40.909 0.00 0.00 0.00 3.27
2521 2624 7.306051 CGTTATAAAGTTAGCTCGGATGTTCTG 60.306 40.741 0.00 0.00 0.00 3.02
2522 2625 6.696148 CGTTATAAAGTTAGCTCGGATGTTCT 59.304 38.462 0.00 0.00 0.00 3.01
2523 2626 6.074463 CCGTTATAAAGTTAGCTCGGATGTTC 60.074 42.308 0.00 0.00 39.17 3.18
2557 2660 3.727258 CCAACGAGGCATCCCCCA 61.727 66.667 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.