Multiple sequence alignment - TraesCS6B01G159500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G159500 chr6B 100.000 3391 0 0 1 3391 163220207 163223597 0.000000e+00 6263
1 TraesCS6B01G159500 chr6B 97.959 98 0 2 1 97 192059035 192059131 5.820000e-38 169
2 TraesCS6B01G159500 chr6D 94.893 2467 84 15 954 3391 86132908 86135361 0.000000e+00 3819
3 TraesCS6B01G159500 chr6D 93.810 420 18 7 85 500 86129813 86130228 2.870000e-175 625
4 TraesCS6B01G159500 chr6D 96.154 78 3 0 530 607 86130228 86130305 9.880000e-26 128
5 TraesCS6B01G159500 chr2B 89.617 1464 120 21 1010 2455 790746405 790744956 0.000000e+00 1832
6 TraesCS6B01G159500 chr2B 86.068 1536 166 18 940 2452 790844650 790846160 0.000000e+00 1607
7 TraesCS6B01G159500 chr2B 85.841 1349 143 20 944 2265 790742826 790741499 0.000000e+00 1389
8 TraesCS6B01G159500 chr2B 85.344 1351 149 26 941 2265 790789819 790791146 0.000000e+00 1352
9 TraesCS6B01G159500 chr2B 92.945 326 20 1 609 934 33847653 33847331 3.960000e-129 472
10 TraesCS6B01G159500 chr2B 94.702 302 15 1 609 909 702713330 702713631 5.120000e-128 468
11 TraesCS6B01G159500 chr2B 84.650 443 38 14 85 524 790789259 790789674 6.770000e-112 414
12 TraesCS6B01G159500 chr2B 98.305 59 1 0 466 524 790743055 790742997 1.660000e-18 104
13 TraesCS6B01G159500 chr6A 95.797 1023 26 7 2081 3088 103673493 103674513 0.000000e+00 1635
14 TraesCS6B01G159500 chr6A 94.228 797 45 1 929 1725 103671978 103672773 0.000000e+00 1216
15 TraesCS6B01G159500 chr6A 85.911 291 19 12 304 587 103671302 103671577 1.190000e-74 291
16 TraesCS6B01G159500 chr6A 96.178 157 5 1 3236 3391 103674815 103674971 4.340000e-64 255
17 TraesCS6B01G159500 chr6A 92.810 153 10 1 147 298 103670499 103670651 1.580000e-53 220
18 TraesCS6B01G159500 chr6A 93.571 140 3 2 3078 3216 103674694 103674828 1.600000e-48 204
19 TraesCS6B01G159500 chr3A 85.834 1546 174 22 934 2452 726269345 726267818 0.000000e+00 1600
20 TraesCS6B01G159500 chr3A 96.939 98 3 0 1 98 349595648 349595551 7.530000e-37 165
21 TraesCS6B01G159500 chr2D 84.339 1558 172 37 940 2446 644728969 644730505 0.000000e+00 1459
22 TraesCS6B01G159500 chr2D 83.855 1437 172 36 938 2337 644521992 644520579 0.000000e+00 1314
23 TraesCS6B01G159500 chr2D 87.345 885 79 12 1586 2452 644801289 644802158 0.000000e+00 983
24 TraesCS6B01G159500 chr2D 88.038 209 25 0 1045 1253 644773140 644773348 7.270000e-62 248
25 TraesCS6B01G159500 chr2D 93.548 93 6 0 2457 2549 644848694 644848602 4.560000e-29 139
26 TraesCS6B01G159500 chr2A 83.879 1557 173 38 941 2446 770019581 770021110 0.000000e+00 1413
27 TraesCS6B01G159500 chr2A 82.656 1551 193 44 938 2448 769633182 769631668 0.000000e+00 1304
28 TraesCS6B01G159500 chr2A 95.302 298 14 0 611 908 622699864 622700161 1.100000e-129 473
29 TraesCS6B01G159500 chr2A 92.097 329 20 4 609 936 65240298 65239975 3.080000e-125 459
30 TraesCS6B01G159500 chr2A 81.743 241 29 6 148 383 769633608 769633378 1.610000e-43 187
31 TraesCS6B01G159500 chr2A 100.000 92 0 0 1 92 753422943 753422852 1.620000e-38 171
32 TraesCS6B01G159500 chr2A 96.040 101 3 1 1 100 401092920 401092820 2.710000e-36 163
33 TraesCS6B01G159500 chr3B 95.364 302 14 0 607 908 606376357 606376056 6.580000e-132 481
34 TraesCS6B01G159500 chr3B 97.938 97 0 2 1 96 120670896 120670991 2.090000e-37 167
35 TraesCS6B01G159500 chr1A 95.000 300 15 0 609 908 520861061 520860762 3.960000e-129 472
36 TraesCS6B01G159500 chr7A 94.684 301 16 0 609 909 243356760 243357060 5.120000e-128 468
37 TraesCS6B01G159500 chr4B 94.684 301 16 0 609 909 40215227 40215527 5.120000e-128 468
38 TraesCS6B01G159500 chr5A 94.389 303 17 0 607 909 703192668 703192970 1.840000e-127 466
39 TraesCS6B01G159500 chr1B 100.000 92 0 0 1 92 38843821 38843912 1.620000e-38 171
40 TraesCS6B01G159500 chr4A 97.959 98 0 2 1 97 740127935 740128031 5.820000e-38 169
41 TraesCS6B01G159500 chrUn 97.938 97 0 2 1 96 85111428 85111523 2.090000e-37 167
42 TraesCS6B01G159500 chrUn 96.040 101 3 1 1 100 476383146 476383046 2.710000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G159500 chr6B 163220207 163223597 3390 False 6263.000000 6263 100.000000 1 3391 1 chr6B.!!$F1 3390
1 TraesCS6B01G159500 chr6D 86129813 86135361 5548 False 1524.000000 3819 94.952333 85 3391 3 chr6D.!!$F1 3306
2 TraesCS6B01G159500 chr2B 790844650 790846160 1510 False 1607.000000 1607 86.068000 940 2452 1 chr2B.!!$F2 1512
3 TraesCS6B01G159500 chr2B 790741499 790746405 4906 True 1108.333333 1832 91.254333 466 2455 3 chr2B.!!$R2 1989
4 TraesCS6B01G159500 chr2B 790789259 790791146 1887 False 883.000000 1352 84.997000 85 2265 2 chr2B.!!$F3 2180
5 TraesCS6B01G159500 chr6A 103670499 103674971 4472 False 636.833333 1635 93.082500 147 3391 6 chr6A.!!$F1 3244
6 TraesCS6B01G159500 chr3A 726267818 726269345 1527 True 1600.000000 1600 85.834000 934 2452 1 chr3A.!!$R2 1518
7 TraesCS6B01G159500 chr2D 644728969 644730505 1536 False 1459.000000 1459 84.339000 940 2446 1 chr2D.!!$F1 1506
8 TraesCS6B01G159500 chr2D 644520579 644521992 1413 True 1314.000000 1314 83.855000 938 2337 1 chr2D.!!$R1 1399
9 TraesCS6B01G159500 chr2D 644801289 644802158 869 False 983.000000 983 87.345000 1586 2452 1 chr2D.!!$F3 866
10 TraesCS6B01G159500 chr2A 770019581 770021110 1529 False 1413.000000 1413 83.879000 941 2446 1 chr2A.!!$F2 1505
11 TraesCS6B01G159500 chr2A 769631668 769633608 1940 True 745.500000 1304 82.199500 148 2448 2 chr2A.!!$R4 2300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 3793 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.0 2.69 F
855 3795 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2301 8544 1.597854 CACGTGTGTCCCTGCATGT 60.598 57.895 7.58 0.0 35.47 3.21 R
2742 9013 2.638325 TCATGGGGTGGTTAGAAGGAA 58.362 47.619 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 5.977489 AACTCTTAAAGTTAATGTGGCCC 57.023 39.130 0.00 0.00 46.55 5.80
63 64 2.883122 TAAAGTTAATGTGGCCCCGT 57.117 45.000 0.00 0.00 0.00 5.28
64 65 2.003937 AAAGTTAATGTGGCCCCGTT 57.996 45.000 0.00 0.00 0.00 4.44
65 66 1.253100 AAGTTAATGTGGCCCCGTTG 58.747 50.000 0.00 0.00 0.00 4.10
66 67 1.214325 GTTAATGTGGCCCCGTTGC 59.786 57.895 0.00 0.00 0.00 4.17
67 68 1.228583 TTAATGTGGCCCCGTTGCA 60.229 52.632 0.00 0.00 0.00 4.08
68 69 0.827925 TTAATGTGGCCCCGTTGCAA 60.828 50.000 0.00 0.00 0.00 4.08
69 70 1.528292 TAATGTGGCCCCGTTGCAAC 61.528 55.000 19.89 19.89 35.65 4.17
87 88 3.782042 GCACGGGCGTTCTTCTAG 58.218 61.111 0.00 0.00 0.00 2.43
89 90 0.669625 GCACGGGCGTTCTTCTAGTT 60.670 55.000 0.00 0.00 0.00 2.24
145 146 6.376581 TGCCACATGTGAACATATATGAAACA 59.623 34.615 27.46 17.71 34.26 2.83
242 244 5.183904 GTGTTCATCCAAATAACTTCCAGCT 59.816 40.000 0.00 0.00 0.00 4.24
270 272 3.007920 CTCCTCTGCCAGCCCAGT 61.008 66.667 0.00 0.00 34.47 4.00
328 976 2.046313 GCCTCGAATTATTGCATTGCG 58.954 47.619 3.84 0.00 0.00 4.85
329 977 2.046313 CCTCGAATTATTGCATTGCGC 58.954 47.619 0.00 0.00 42.89 6.09
398 1053 7.064371 TCGAGTGTGTTCTACTATCACTACTTC 59.936 40.741 0.00 0.00 39.08 3.01
426 1081 6.753107 TGAGTCGACATTATCACTACTTGA 57.247 37.500 19.50 0.00 39.11 3.02
637 3577 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
638 3578 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
639 3579 2.037641 AGCATCAGTACAGACACAAGCA 59.962 45.455 0.00 0.00 0.00 3.91
640 3580 2.158449 GCATCAGTACAGACACAAGCAC 59.842 50.000 0.00 0.00 0.00 4.40
641 3581 3.657634 CATCAGTACAGACACAAGCACT 58.342 45.455 0.00 0.00 0.00 4.40
642 3582 3.371102 TCAGTACAGACACAAGCACTC 57.629 47.619 0.00 0.00 0.00 3.51
643 3583 2.693074 TCAGTACAGACACAAGCACTCA 59.307 45.455 0.00 0.00 0.00 3.41
644 3584 3.321968 TCAGTACAGACACAAGCACTCAT 59.678 43.478 0.00 0.00 0.00 2.90
645 3585 4.522789 TCAGTACAGACACAAGCACTCATA 59.477 41.667 0.00 0.00 0.00 2.15
646 3586 5.185828 TCAGTACAGACACAAGCACTCATAT 59.814 40.000 0.00 0.00 0.00 1.78
647 3587 6.377146 TCAGTACAGACACAAGCACTCATATA 59.623 38.462 0.00 0.00 0.00 0.86
648 3588 6.473778 CAGTACAGACACAAGCACTCATATAC 59.526 42.308 0.00 0.00 0.00 1.47
649 3589 5.405935 ACAGACACAAGCACTCATATACA 57.594 39.130 0.00 0.00 0.00 2.29
650 3590 5.171476 ACAGACACAAGCACTCATATACAC 58.829 41.667 0.00 0.00 0.00 2.90
651 3591 4.266265 CAGACACAAGCACTCATATACACG 59.734 45.833 0.00 0.00 0.00 4.49
652 3592 2.930040 ACACAAGCACTCATATACACGC 59.070 45.455 0.00 0.00 0.00 5.34
653 3593 2.034591 CACAAGCACTCATATACACGCG 60.035 50.000 3.53 3.53 0.00 6.01
654 3594 1.071239 CAAGCACTCATATACACGCGC 60.071 52.381 5.73 0.00 0.00 6.86
655 3595 0.102300 AGCACTCATATACACGCGCA 59.898 50.000 5.73 0.00 0.00 6.09
656 3596 1.139989 GCACTCATATACACGCGCAT 58.860 50.000 5.73 0.00 0.00 4.73
657 3597 2.030274 AGCACTCATATACACGCGCATA 60.030 45.455 5.73 1.53 0.00 3.14
658 3598 2.090658 GCACTCATATACACGCGCATAC 59.909 50.000 5.73 0.00 0.00 2.39
659 3599 3.305110 CACTCATATACACGCGCATACA 58.695 45.455 5.73 0.00 0.00 2.29
660 3600 3.119628 CACTCATATACACGCGCATACAC 59.880 47.826 5.73 0.00 0.00 2.90
661 3601 3.004419 ACTCATATACACGCGCATACACT 59.996 43.478 5.73 0.00 0.00 3.55
662 3602 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
663 3603 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
664 3604 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
665 3605 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
666 3606 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
667 3607 2.184322 CGCGCATACACTCACCCT 59.816 61.111 8.75 0.00 0.00 4.34
668 3608 1.447838 CGCGCATACACTCACCCTT 60.448 57.895 8.75 0.00 0.00 3.95
669 3609 0.179121 CGCGCATACACTCACCCTTA 60.179 55.000 8.75 0.00 0.00 2.69
670 3610 1.538204 CGCGCATACACTCACCCTTAT 60.538 52.381 8.75 0.00 0.00 1.73
671 3611 1.867233 GCGCATACACTCACCCTTATG 59.133 52.381 0.30 0.00 0.00 1.90
672 3612 2.483013 GCGCATACACTCACCCTTATGA 60.483 50.000 0.30 0.00 0.00 2.15
673 3613 3.792401 CGCATACACTCACCCTTATGAA 58.208 45.455 0.00 0.00 0.00 2.57
674 3614 3.555956 CGCATACACTCACCCTTATGAAC 59.444 47.826 0.00 0.00 0.00 3.18
675 3615 3.555956 GCATACACTCACCCTTATGAACG 59.444 47.826 0.00 0.00 0.00 3.95
676 3616 2.094762 ACACTCACCCTTATGAACGC 57.905 50.000 0.00 0.00 0.00 4.84
677 3617 1.346395 ACACTCACCCTTATGAACGCA 59.654 47.619 0.00 0.00 0.00 5.24
678 3618 1.732259 CACTCACCCTTATGAACGCAC 59.268 52.381 0.00 0.00 0.00 5.34
679 3619 1.346395 ACTCACCCTTATGAACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
680 3620 1.732259 CTCACCCTTATGAACGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
681 3621 1.070914 TCACCCTTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
682 3622 1.196808 CACCCTTATGAACGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
683 3623 0.442310 CCCTTATGAACGCACACACG 59.558 55.000 0.00 0.00 39.50 4.49
684 3624 0.179225 CCTTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
685 3625 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
686 3626 1.128507 CTTATGAACGCACACACGCAT 59.871 47.619 0.00 0.00 36.19 4.73
687 3627 1.997669 TATGAACGCACACACGCATA 58.002 45.000 0.00 0.00 36.19 3.14
688 3628 0.442310 ATGAACGCACACACGCATAC 59.558 50.000 0.00 0.00 36.19 2.39
689 3629 1.131826 GAACGCACACACGCATACC 59.868 57.895 0.00 0.00 36.19 2.73
690 3630 2.235536 GAACGCACACACGCATACCC 62.236 60.000 0.00 0.00 36.19 3.69
691 3631 2.434185 CGCACACACGCATACCCT 60.434 61.111 0.00 0.00 0.00 4.34
692 3632 1.153726 CGCACACACGCATACCCTA 60.154 57.895 0.00 0.00 0.00 3.53
693 3633 1.418342 CGCACACACGCATACCCTAC 61.418 60.000 0.00 0.00 0.00 3.18
694 3634 1.087771 GCACACACGCATACCCTACC 61.088 60.000 0.00 0.00 0.00 3.18
695 3635 0.461339 CACACACGCATACCCTACCC 60.461 60.000 0.00 0.00 0.00 3.69
696 3636 1.145377 CACACGCATACCCTACCCC 59.855 63.158 0.00 0.00 0.00 4.95
697 3637 1.002533 ACACGCATACCCTACCCCT 59.997 57.895 0.00 0.00 0.00 4.79
698 3638 0.262580 ACACGCATACCCTACCCCTA 59.737 55.000 0.00 0.00 0.00 3.53
699 3639 1.132945 ACACGCATACCCTACCCCTAT 60.133 52.381 0.00 0.00 0.00 2.57
700 3640 1.275291 CACGCATACCCTACCCCTATG 59.725 57.143 0.00 0.00 0.00 2.23
701 3641 1.148446 ACGCATACCCTACCCCTATGA 59.852 52.381 0.00 0.00 0.00 2.15
702 3642 1.825474 CGCATACCCTACCCCTATGAG 59.175 57.143 0.00 0.00 0.00 2.90
703 3643 1.555533 GCATACCCTACCCCTATGAGC 59.444 57.143 0.00 0.00 0.00 4.26
704 3644 2.902608 CATACCCTACCCCTATGAGCA 58.097 52.381 0.00 0.00 0.00 4.26
705 3645 2.393630 TACCCTACCCCTATGAGCAC 57.606 55.000 0.00 0.00 0.00 4.40
706 3646 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
707 3647 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
708 3648 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
709 3649 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
710 3650 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
711 3651 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
712 3652 1.048724 CCCCTATGAGCACCTCCGAA 61.049 60.000 0.00 0.00 0.00 4.30
713 3653 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
714 3654 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
715 3655 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
716 3656 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
717 3657 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
718 3658 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
719 3659 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
720 3660 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
721 3661 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
722 3662 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
723 3663 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
724 3664 1.595993 CCTCCGAAAGACTGAGCCGA 61.596 60.000 0.00 0.00 0.00 5.54
725 3665 0.456995 CTCCGAAAGACTGAGCCGAC 60.457 60.000 0.00 0.00 0.00 4.79
726 3666 1.176619 TCCGAAAGACTGAGCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
727 3667 0.108615 CCGAAAGACTGAGCCGACAT 60.109 55.000 0.00 0.00 0.00 3.06
728 3668 1.134367 CCGAAAGACTGAGCCGACATA 59.866 52.381 0.00 0.00 0.00 2.29
729 3669 2.223829 CCGAAAGACTGAGCCGACATAT 60.224 50.000 0.00 0.00 0.00 1.78
730 3670 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
731 3671 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
732 3672 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
733 3673 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
734 3674 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
735 3675 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
736 3676 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
737 3677 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
738 3678 4.100035 ACTGAGCCGACATATCATCTTGAA 59.900 41.667 0.00 0.00 0.00 2.69
739 3679 5.022282 TGAGCCGACATATCATCTTGAAA 57.978 39.130 0.00 0.00 0.00 2.69
740 3680 5.614308 TGAGCCGACATATCATCTTGAAAT 58.386 37.500 0.00 0.00 0.00 2.17
741 3681 6.057533 TGAGCCGACATATCATCTTGAAATT 58.942 36.000 0.00 0.00 0.00 1.82
742 3682 6.543465 TGAGCCGACATATCATCTTGAAATTT 59.457 34.615 0.00 0.00 0.00 1.82
743 3683 7.714813 TGAGCCGACATATCATCTTGAAATTTA 59.285 33.333 0.00 0.00 0.00 1.40
744 3684 7.865707 AGCCGACATATCATCTTGAAATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
745 3685 6.792250 GCCGACATATCATCTTGAAATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
746 3686 7.307160 GCCGACATATCATCTTGAAATTTACGA 60.307 37.037 0.00 0.00 0.00 3.43
747 3687 8.547894 CCGACATATCATCTTGAAATTTACGAA 58.452 33.333 0.00 0.00 0.00 3.85
748 3688 9.573102 CGACATATCATCTTGAAATTTACGAAG 57.427 33.333 0.00 0.00 0.00 3.79
753 3693 7.129109 TCATCTTGAAATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
754 3694 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
755 3695 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
756 3696 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
757 3697 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
769 3709 3.437795 CCGTAGGCACCTCGTCGT 61.438 66.667 0.00 0.00 46.14 4.34
770 3710 2.564975 CGTAGGCACCTCGTCGTT 59.435 61.111 0.00 0.00 0.00 3.85
771 3711 1.513586 CGTAGGCACCTCGTCGTTC 60.514 63.158 0.00 0.00 0.00 3.95
772 3712 1.582968 GTAGGCACCTCGTCGTTCA 59.417 57.895 0.00 0.00 0.00 3.18
773 3713 0.731855 GTAGGCACCTCGTCGTTCAC 60.732 60.000 0.00 0.00 0.00 3.18
792 3732 2.363297 GGGAACGTCTCCTTCCACT 58.637 57.895 13.94 0.00 44.68 4.00
793 3733 0.037232 GGGAACGTCTCCTTCCACTG 60.037 60.000 13.94 0.00 44.68 3.66
794 3734 0.966920 GGAACGTCTCCTTCCACTGA 59.033 55.000 8.87 0.00 41.61 3.41
795 3735 1.343465 GGAACGTCTCCTTCCACTGAA 59.657 52.381 8.87 0.00 41.61 3.02
796 3736 2.224209 GGAACGTCTCCTTCCACTGAAA 60.224 50.000 8.87 0.00 41.61 2.69
797 3737 2.821991 ACGTCTCCTTCCACTGAAAG 57.178 50.000 0.00 0.00 42.29 2.62
798 3738 1.270358 ACGTCTCCTTCCACTGAAAGC 60.270 52.381 0.00 0.00 37.60 3.51
799 3739 1.433534 GTCTCCTTCCACTGAAAGCG 58.566 55.000 0.00 0.00 37.60 4.68
800 3740 0.320771 TCTCCTTCCACTGAAAGCGC 60.321 55.000 0.00 0.00 37.60 5.92
801 3741 0.603707 CTCCTTCCACTGAAAGCGCA 60.604 55.000 11.47 0.00 37.60 6.09
802 3742 0.036732 TCCTTCCACTGAAAGCGCAT 59.963 50.000 11.47 0.00 37.60 4.73
803 3743 0.449388 CCTTCCACTGAAAGCGCATC 59.551 55.000 11.47 8.39 37.60 3.91
804 3744 0.095935 CTTCCACTGAAAGCGCATCG 59.904 55.000 11.47 6.82 37.60 3.84
815 3755 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
816 3756 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
817 3757 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
818 3758 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
819 3759 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
820 3760 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
821 3761 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
822 3762 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
823 3763 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
824 3764 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
825 3765 6.202516 TCGCCGAAAATCCTGAAATAAATT 57.797 33.333 0.00 0.00 0.00 1.82
826 3766 6.262601 TCGCCGAAAATCCTGAAATAAATTC 58.737 36.000 0.00 0.00 38.60 2.17
827 3767 6.033341 CGCCGAAAATCCTGAAATAAATTCA 58.967 36.000 0.00 0.00 45.71 2.57
841 3781 7.862372 TGAAATAAATTCAGGAATAATGCGAGC 59.138 33.333 0.00 0.00 43.08 5.03
842 3782 6.882610 ATAAATTCAGGAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
843 3783 4.558538 AATTCAGGAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
844 3784 1.953559 TCAGGAATAATGCGAGCACC 58.046 50.000 0.00 0.00 0.00 5.01
845 3785 1.209261 TCAGGAATAATGCGAGCACCA 59.791 47.619 0.00 0.00 0.00 4.17
846 3786 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
847 3787 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
848 3788 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
849 3789 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
850 3790 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
851 3791 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
852 3792 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
853 3793 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
854 3794 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
855 3795 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
856 3796 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
857 3797 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
858 3798 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
863 3803 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
875 3815 0.546598 CCTGGTGGGTTGAGGATACC 59.453 60.000 0.00 0.00 34.82 2.73
876 3816 1.285280 CTGGTGGGTTGAGGATACCA 58.715 55.000 0.00 0.00 38.98 3.25
877 3817 1.846439 CTGGTGGGTTGAGGATACCAT 59.154 52.381 0.00 0.00 40.34 3.55
878 3818 2.242196 CTGGTGGGTTGAGGATACCATT 59.758 50.000 0.00 0.00 40.34 3.16
879 3819 2.025416 TGGTGGGTTGAGGATACCATTG 60.025 50.000 0.00 0.00 36.56 2.82
880 3820 2.025321 GGTGGGTTGAGGATACCATTGT 60.025 50.000 0.00 0.00 37.40 2.71
881 3821 3.279434 GTGGGTTGAGGATACCATTGTC 58.721 50.000 0.00 0.00 37.40 3.18
882 3822 2.241176 TGGGTTGAGGATACCATTGTCC 59.759 50.000 0.00 0.00 37.40 4.02
883 3823 2.241176 GGGTTGAGGATACCATTGTCCA 59.759 50.000 0.00 0.00 35.42 4.02
884 3824 3.279434 GGTTGAGGATACCATTGTCCAC 58.721 50.000 0.00 0.00 35.42 4.02
885 3825 3.279434 GTTGAGGATACCATTGTCCACC 58.721 50.000 0.00 0.00 35.42 4.61
886 3826 2.845659 TGAGGATACCATTGTCCACCT 58.154 47.619 0.00 0.00 35.42 4.00
887 3827 4.002256 TGAGGATACCATTGTCCACCTA 57.998 45.455 0.00 0.00 35.42 3.08
888 3828 4.367166 TGAGGATACCATTGTCCACCTAA 58.633 43.478 0.00 0.00 35.42 2.69
889 3829 4.163458 TGAGGATACCATTGTCCACCTAAC 59.837 45.833 0.00 0.00 35.42 2.34
890 3830 3.458487 AGGATACCATTGTCCACCTAACC 59.542 47.826 0.00 0.00 35.42 2.85
891 3831 3.201266 GGATACCATTGTCCACCTAACCA 59.799 47.826 0.00 0.00 33.15 3.67
898 3839 3.695830 TGTCCACCTAACCATCTCAAC 57.304 47.619 0.00 0.00 0.00 3.18
899 3840 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
901 3843 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
903 3845 3.338249 CACCTAACCATCTCAACCACAG 58.662 50.000 0.00 0.00 0.00 3.66
904 3846 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
905 3847 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
915 3857 2.240493 AACCACAGGTTGAGAGTTCG 57.760 50.000 0.00 0.00 45.07 3.95
916 3858 0.249911 ACCACAGGTTGAGAGTTCGC 60.250 55.000 0.00 0.00 27.29 4.70
927 3869 5.169295 GTTGAGAGTTCGCAATAACCTACT 58.831 41.667 1.75 0.00 37.92 2.57
936 4209 6.624352 TCGCAATAACCTACTAGTTCGTAT 57.376 37.500 0.00 0.00 0.00 3.06
960 6771 4.430908 CGTAGGCTAGGGTAAAACAGAAG 58.569 47.826 6.33 0.00 0.00 2.85
1231 7053 0.233590 CGTTGATTCGCGGTTTCACA 59.766 50.000 6.13 0.00 0.00 3.58
1342 7164 3.068691 TCCGCCCTCGACTTCCTG 61.069 66.667 0.00 0.00 38.10 3.86
1440 7262 0.700269 ACCATCCATGCCTCCTCCAT 60.700 55.000 0.00 0.00 0.00 3.41
1498 7338 5.316987 ACATAACTCTCCCAGAAAACTTGG 58.683 41.667 0.00 0.00 35.41 3.61
1499 7339 5.073144 ACATAACTCTCCCAGAAAACTTGGA 59.927 40.000 0.00 0.00 37.96 3.53
1501 7341 4.519906 ACTCTCCCAGAAAACTTGGAAA 57.480 40.909 0.00 0.00 37.96 3.13
1548 7391 0.317160 CCGCTGTGAGTACAAGTCCA 59.683 55.000 0.00 0.00 36.14 4.02
1573 7416 0.475632 AGTCCTTGGGGTCATGGTCA 60.476 55.000 0.00 0.00 38.78 4.02
1634 7477 2.422597 TGACAAGCGGTGGAGTTTATG 58.577 47.619 0.00 0.00 0.00 1.90
2366 8612 6.857964 GGTGGAATAATAATCAGTTCATTGCG 59.142 38.462 0.00 0.00 0.00 4.85
2391 8637 5.738909 ACCATAATGCAGGTCATATCTAGC 58.261 41.667 0.00 0.00 34.33 3.42
2742 9013 3.710677 ACTAGCAGAATCAGAGAAGCCAT 59.289 43.478 0.00 0.00 0.00 4.40
2765 9036 2.356135 CTTCTAACCACCCCATGAACG 58.644 52.381 0.00 0.00 0.00 3.95
2767 9038 1.979308 TCTAACCACCCCATGAACGAA 59.021 47.619 0.00 0.00 0.00 3.85
2871 9142 9.672086 TGTAGACTATTTGTTAATGTTTGTTGC 57.328 29.630 0.00 0.00 0.00 4.17
2958 9234 2.568696 TGACGAGCAGAACTAGATGC 57.431 50.000 0.00 3.91 42.87 3.91
3009 9285 6.855836 TCTTGTTTTATTAAGCTGCAGATGG 58.144 36.000 20.43 0.00 0.00 3.51
3072 9348 2.887152 GTTTGGTCTGCACAGGATTCTT 59.113 45.455 0.00 0.00 0.00 2.52
3157 9623 4.220602 TCAGTTACTGCTTGCACAGATAGA 59.779 41.667 11.03 0.17 40.25 1.98
3158 9624 5.105187 TCAGTTACTGCTTGCACAGATAGAT 60.105 40.000 11.03 0.00 40.25 1.98
3159 9625 6.096846 TCAGTTACTGCTTGCACAGATAGATA 59.903 38.462 11.03 0.00 40.25 1.98
3160 9626 6.199908 CAGTTACTGCTTGCACAGATAGATAC 59.800 42.308 11.03 6.56 40.25 2.24
3161 9627 4.743057 ACTGCTTGCACAGATAGATACA 57.257 40.909 11.03 0.00 40.25 2.29
3216 9682 4.354662 ACTAGGAGAAGGGTAACTGAAGG 58.645 47.826 0.00 0.00 0.00 3.46
3217 9683 2.552367 AGGAGAAGGGTAACTGAAGGG 58.448 52.381 0.00 0.00 0.00 3.95
3249 9724 1.278413 GGGTGGAGGGTAACTGAAGTC 59.722 57.143 0.00 0.00 0.00 3.01
3273 9748 4.368808 CCACTTTGCGACGCGTGG 62.369 66.667 24.41 24.41 40.71 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.736244 GGCCACATTAACTTTAAGAGTTCAATA 58.264 33.333 0.00 0.00 45.40 1.90
34 35 7.309805 GGGCCACATTAACTTTAAGAGTTCAAT 60.310 37.037 4.39 4.32 45.40 2.57
35 36 6.015772 GGGCCACATTAACTTTAAGAGTTCAA 60.016 38.462 4.39 2.81 45.40 2.69
36 37 5.475564 GGGCCACATTAACTTTAAGAGTTCA 59.524 40.000 4.39 0.00 45.40 3.18
37 38 5.105877 GGGGCCACATTAACTTTAAGAGTTC 60.106 44.000 4.39 0.00 45.40 3.01
41 42 3.244981 ACGGGGCCACATTAACTTTAAGA 60.245 43.478 5.46 0.00 0.00 2.10
42 43 3.086282 ACGGGGCCACATTAACTTTAAG 58.914 45.455 5.46 0.00 0.00 1.85
43 44 3.157750 ACGGGGCCACATTAACTTTAA 57.842 42.857 5.46 0.00 0.00 1.52
44 45 2.820787 CAACGGGGCCACATTAACTTTA 59.179 45.455 5.46 0.00 0.00 1.85
46 47 1.253100 CAACGGGGCCACATTAACTT 58.747 50.000 5.46 0.00 0.00 2.66
47 48 1.248101 GCAACGGGGCCACATTAACT 61.248 55.000 5.46 0.00 0.00 2.24
48 49 1.214325 GCAACGGGGCCACATTAAC 59.786 57.895 5.46 0.00 0.00 2.01
49 50 0.827925 TTGCAACGGGGCCACATTAA 60.828 50.000 5.46 0.00 0.00 1.40
50 51 1.228583 TTGCAACGGGGCCACATTA 60.229 52.632 5.46 0.00 0.00 1.90
51 52 2.522923 TTGCAACGGGGCCACATT 60.523 55.556 5.46 0.00 0.00 2.71
52 53 3.302344 GTTGCAACGGGGCCACAT 61.302 61.111 14.90 0.00 30.39 3.21
70 71 0.669625 AACTAGAAGAACGCCCGTGC 60.670 55.000 0.00 0.00 0.00 5.34
71 72 2.642139 TAACTAGAAGAACGCCCGTG 57.358 50.000 0.00 0.00 0.00 4.94
74 75 5.658468 ACTAACATAACTAGAAGAACGCCC 58.342 41.667 0.00 0.00 0.00 6.13
75 76 5.454877 CGACTAACATAACTAGAAGAACGCC 59.545 44.000 0.00 0.00 0.00 5.68
76 77 6.194325 GTCGACTAACATAACTAGAAGAACGC 59.806 42.308 8.70 0.00 0.00 4.84
77 78 6.686253 GGTCGACTAACATAACTAGAAGAACG 59.314 42.308 16.46 0.00 0.00 3.95
78 79 7.533426 TGGTCGACTAACATAACTAGAAGAAC 58.467 38.462 16.46 0.00 0.00 3.01
79 80 7.148120 CCTGGTCGACTAACATAACTAGAAGAA 60.148 40.741 16.46 0.00 0.00 2.52
81 82 6.095160 ACCTGGTCGACTAACATAACTAGAAG 59.905 42.308 16.46 0.00 0.00 2.85
82 83 5.948162 ACCTGGTCGACTAACATAACTAGAA 59.052 40.000 16.46 0.00 0.00 2.10
83 84 5.503927 ACCTGGTCGACTAACATAACTAGA 58.496 41.667 16.46 0.00 0.00 2.43
84 85 5.831702 ACCTGGTCGACTAACATAACTAG 57.168 43.478 16.46 0.00 0.00 2.57
85 86 5.477984 ACAACCTGGTCGACTAACATAACTA 59.522 40.000 16.46 0.00 0.00 2.24
86 87 4.282703 ACAACCTGGTCGACTAACATAACT 59.717 41.667 16.46 0.00 0.00 2.24
87 88 4.563061 ACAACCTGGTCGACTAACATAAC 58.437 43.478 16.46 0.00 0.00 1.89
89 90 4.281435 TCAACAACCTGGTCGACTAACATA 59.719 41.667 16.46 0.00 0.00 2.29
145 146 6.414694 CGCGATATTTTCAACATTGTAAGCAT 59.585 34.615 0.00 0.00 0.00 3.79
242 244 2.069776 CAGAGGAGGCAAAGGGACA 58.930 57.895 0.00 0.00 0.00 4.02
328 976 5.655488 AGCTCATTATCCGTACATATCAGC 58.345 41.667 0.00 0.00 0.00 4.26
329 977 9.809096 ATTTAGCTCATTATCCGTACATATCAG 57.191 33.333 0.00 0.00 0.00 2.90
398 1053 8.467402 AGTAGTGATAATGTCGACTCAAAAAG 57.533 34.615 17.92 0.00 0.00 2.27
433 1088 0.107214 TGATAGCGCCCCCTCAAAAG 60.107 55.000 2.29 0.00 0.00 2.27
614 3554 5.179368 GCTTGTGTCTGTACTGATGCTAAAA 59.821 40.000 5.69 0.00 0.00 1.52
615 3555 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
616 3556 4.245660 GCTTGTGTCTGTACTGATGCTAA 58.754 43.478 5.69 0.07 0.00 3.09
618 3558 2.037641 TGCTTGTGTCTGTACTGATGCT 59.962 45.455 5.69 0.00 0.00 3.79
619 3559 2.158449 GTGCTTGTGTCTGTACTGATGC 59.842 50.000 5.69 6.69 0.00 3.91
622 3562 2.693074 TGAGTGCTTGTGTCTGTACTGA 59.307 45.455 0.00 0.00 29.71 3.41
623 3563 3.097877 TGAGTGCTTGTGTCTGTACTG 57.902 47.619 0.00 0.00 29.71 2.74
625 3565 6.253727 GTGTATATGAGTGCTTGTGTCTGTAC 59.746 42.308 0.00 0.00 0.00 2.90
627 3567 5.171476 GTGTATATGAGTGCTTGTGTCTGT 58.829 41.667 0.00 0.00 0.00 3.41
628 3568 4.266265 CGTGTATATGAGTGCTTGTGTCTG 59.734 45.833 0.00 0.00 0.00 3.51
630 3570 3.000322 GCGTGTATATGAGTGCTTGTGTC 60.000 47.826 0.00 0.00 0.00 3.67
631 3571 2.930040 GCGTGTATATGAGTGCTTGTGT 59.070 45.455 0.00 0.00 0.00 3.72
632 3572 2.034591 CGCGTGTATATGAGTGCTTGTG 60.035 50.000 0.00 0.00 0.00 3.33
633 3573 2.193447 CGCGTGTATATGAGTGCTTGT 58.807 47.619 0.00 0.00 0.00 3.16
634 3574 1.071239 GCGCGTGTATATGAGTGCTTG 60.071 52.381 8.43 0.00 37.18 4.01
635 3575 1.209128 GCGCGTGTATATGAGTGCTT 58.791 50.000 8.43 0.00 37.18 3.91
636 3576 0.102300 TGCGCGTGTATATGAGTGCT 59.898 50.000 8.43 0.00 40.38 4.40
637 3577 1.139989 ATGCGCGTGTATATGAGTGC 58.860 50.000 8.43 3.80 40.17 4.40
638 3578 3.119628 GTGTATGCGCGTGTATATGAGTG 59.880 47.826 13.61 0.00 0.00 3.51
639 3579 3.004419 AGTGTATGCGCGTGTATATGAGT 59.996 43.478 13.61 1.18 0.00 3.41
640 3580 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
641 3581 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
642 3582 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
643 3583 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
644 3584 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
645 3585 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
646 3586 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
647 3587 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
648 3588 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
649 3589 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
650 3590 0.179121 TAAGGGTGAGTGTATGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
651 3591 1.867233 CATAAGGGTGAGTGTATGCGC 59.133 52.381 0.00 0.00 0.00 6.09
652 3592 3.452755 TCATAAGGGTGAGTGTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
653 3593 3.555956 CGTTCATAAGGGTGAGTGTATGC 59.444 47.826 0.00 0.00 0.00 3.14
654 3594 3.555956 GCGTTCATAAGGGTGAGTGTATG 59.444 47.826 0.00 0.00 0.00 2.39
655 3595 3.196901 TGCGTTCATAAGGGTGAGTGTAT 59.803 43.478 0.00 0.00 0.00 2.29
656 3596 2.563620 TGCGTTCATAAGGGTGAGTGTA 59.436 45.455 0.00 0.00 0.00 2.90
657 3597 1.346395 TGCGTTCATAAGGGTGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
658 3598 1.732259 GTGCGTTCATAAGGGTGAGTG 59.268 52.381 0.00 0.00 0.00 3.51
659 3599 1.346395 TGTGCGTTCATAAGGGTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
660 3600 1.732259 GTGTGCGTTCATAAGGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
661 3601 1.070914 TGTGTGCGTTCATAAGGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
662 3602 1.196808 GTGTGTGCGTTCATAAGGGTG 59.803 52.381 0.00 0.00 0.00 4.61
663 3603 1.519408 GTGTGTGCGTTCATAAGGGT 58.481 50.000 0.00 0.00 0.00 4.34
664 3604 0.442310 CGTGTGTGCGTTCATAAGGG 59.558 55.000 0.00 0.00 0.00 3.95
665 3605 0.179225 GCGTGTGTGCGTTCATAAGG 60.179 55.000 0.00 0.00 0.00 2.69
666 3606 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
667 3607 1.152510 ATGCGTGTGTGCGTTCATAA 58.847 45.000 0.00 0.00 37.81 1.90
668 3608 1.656594 GTATGCGTGTGTGCGTTCATA 59.343 47.619 0.00 0.00 37.81 2.15
669 3609 0.442310 GTATGCGTGTGTGCGTTCAT 59.558 50.000 0.00 0.00 37.81 2.57
670 3610 1.561717 GGTATGCGTGTGTGCGTTCA 61.562 55.000 0.00 0.00 37.81 3.18
671 3611 1.131826 GGTATGCGTGTGTGCGTTC 59.868 57.895 0.00 0.00 37.81 3.95
672 3612 2.322081 GGGTATGCGTGTGTGCGTT 61.322 57.895 0.00 0.00 37.81 4.84
673 3613 1.879737 TAGGGTATGCGTGTGTGCGT 61.880 55.000 0.00 0.00 37.81 5.24
674 3614 1.153726 TAGGGTATGCGTGTGTGCG 60.154 57.895 0.00 0.00 37.81 5.34
675 3615 1.087771 GGTAGGGTATGCGTGTGTGC 61.088 60.000 0.00 0.00 0.00 4.57
676 3616 0.461339 GGGTAGGGTATGCGTGTGTG 60.461 60.000 0.00 0.00 0.00 3.82
677 3617 1.619807 GGGGTAGGGTATGCGTGTGT 61.620 60.000 0.00 0.00 0.00 3.72
678 3618 1.145377 GGGGTAGGGTATGCGTGTG 59.855 63.158 0.00 0.00 0.00 3.82
679 3619 0.262580 TAGGGGTAGGGTATGCGTGT 59.737 55.000 0.00 0.00 0.00 4.49
680 3620 1.275291 CATAGGGGTAGGGTATGCGTG 59.725 57.143 0.00 0.00 0.00 5.34
681 3621 1.148446 TCATAGGGGTAGGGTATGCGT 59.852 52.381 0.00 0.00 0.00 5.24
682 3622 1.825474 CTCATAGGGGTAGGGTATGCG 59.175 57.143 0.00 0.00 0.00 4.73
683 3623 1.555533 GCTCATAGGGGTAGGGTATGC 59.444 57.143 0.00 0.00 0.00 3.14
684 3624 2.567615 GTGCTCATAGGGGTAGGGTATG 59.432 54.545 0.00 0.00 0.00 2.39
685 3625 2.494816 GGTGCTCATAGGGGTAGGGTAT 60.495 54.545 0.00 0.00 0.00 2.73
686 3626 1.132945 GGTGCTCATAGGGGTAGGGTA 60.133 57.143 0.00 0.00 0.00 3.69
687 3627 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
688 3628 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
689 3629 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
690 3630 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
691 3631 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
692 3632 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
693 3633 1.048724 TTCGGAGGTGCTCATAGGGG 61.049 60.000 0.00 0.00 31.08 4.79
694 3634 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
695 3635 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
696 3636 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
697 3637 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
698 3638 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
699 3639 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
700 3640 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
701 3641 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
702 3642 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
703 3643 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
704 3644 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
705 3645 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
706 3646 0.456995 GTCGGCTCAGTCTTTCGGAG 60.457 60.000 0.00 0.00 40.44 4.63
707 3647 1.176619 TGTCGGCTCAGTCTTTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
708 3648 0.108615 ATGTCGGCTCAGTCTTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
709 3649 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
710 3650 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
711 3651 4.343526 AGATGATATGTCGGCTCAGTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
712 3652 3.894427 AGATGATATGTCGGCTCAGTCTT 59.106 43.478 0.00 0.00 0.00 3.01
713 3653 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
714 3654 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
715 3655 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
716 3656 4.248691 TCAAGATGATATGTCGGCTCAG 57.751 45.455 0.00 0.00 0.00 3.35
717 3657 4.670896 TTCAAGATGATATGTCGGCTCA 57.329 40.909 0.00 0.00 0.00 4.26
718 3658 6.551385 AATTTCAAGATGATATGTCGGCTC 57.449 37.500 0.00 0.00 0.00 4.70
719 3659 6.949352 AAATTTCAAGATGATATGTCGGCT 57.051 33.333 0.00 0.00 0.00 5.52
720 3660 6.792250 CGTAAATTTCAAGATGATATGTCGGC 59.208 38.462 0.00 0.00 0.00 5.54
721 3661 8.072238 TCGTAAATTTCAAGATGATATGTCGG 57.928 34.615 0.00 0.00 0.00 4.79
722 3662 9.573102 CTTCGTAAATTTCAAGATGATATGTCG 57.427 33.333 0.00 0.00 0.00 4.35
727 3667 8.879759 GGTGACTTCGTAAATTTCAAGATGATA 58.120 33.333 0.00 0.00 0.00 2.15
728 3668 7.413000 CGGTGACTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
729 3669 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
730 3670 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
731 3671 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
732 3672 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
733 3673 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
734 3674 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
735 3675 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
736 3676 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
737 3677 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
738 3678 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
739 3679 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
740 3680 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
741 3681 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
742 3682 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
743 3683 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
744 3684 1.445582 GGTGCCTACGGTGACTTCG 60.446 63.158 0.00 0.00 0.00 3.79
745 3685 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
746 3686 1.874345 CGAGGTGCCTACGGTGACTT 61.874 60.000 0.00 0.00 0.00 3.01
747 3687 2.341101 CGAGGTGCCTACGGTGACT 61.341 63.158 0.00 0.00 0.00 3.41
748 3688 2.181021 CGAGGTGCCTACGGTGAC 59.819 66.667 0.00 0.00 0.00 3.67
749 3689 2.282674 ACGAGGTGCCTACGGTGA 60.283 61.111 12.22 0.00 0.00 4.02
750 3690 2.181021 GACGAGGTGCCTACGGTG 59.819 66.667 12.22 0.00 0.00 4.94
751 3691 3.437795 CGACGAGGTGCCTACGGT 61.438 66.667 12.22 3.01 0.00 4.83
752 3692 2.862347 GAACGACGAGGTGCCTACGG 62.862 65.000 0.00 1.18 0.00 4.02
753 3693 1.513586 GAACGACGAGGTGCCTACG 60.514 63.158 0.00 9.22 0.00 3.51
754 3694 0.731855 GTGAACGACGAGGTGCCTAC 60.732 60.000 0.00 0.00 0.00 3.18
755 3695 1.582968 GTGAACGACGAGGTGCCTA 59.417 57.895 0.00 0.00 0.00 3.93
756 3696 2.338984 GTGAACGACGAGGTGCCT 59.661 61.111 0.00 0.00 0.00 4.75
776 3716 2.814280 TTCAGTGGAAGGAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
777 3717 2.807108 GCTTTCAGTGGAAGGAGACGTT 60.807 50.000 13.22 0.00 32.18 3.99
778 3718 1.270358 GCTTTCAGTGGAAGGAGACGT 60.270 52.381 13.22 0.00 32.18 4.34
779 3719 1.433534 GCTTTCAGTGGAAGGAGACG 58.566 55.000 13.22 0.00 32.18 4.18
780 3720 1.433534 CGCTTTCAGTGGAAGGAGAC 58.566 55.000 13.22 0.00 32.83 3.36
781 3721 0.320771 GCGCTTTCAGTGGAAGGAGA 60.321 55.000 13.22 0.00 32.83 3.71
782 3722 0.603707 TGCGCTTTCAGTGGAAGGAG 60.604 55.000 13.22 0.00 32.18 3.69
783 3723 0.036732 ATGCGCTTTCAGTGGAAGGA 59.963 50.000 13.22 0.00 32.18 3.36
784 3724 0.449388 GATGCGCTTTCAGTGGAAGG 59.551 55.000 13.22 4.51 33.82 3.46
785 3725 0.095935 CGATGCGCTTTCAGTGGAAG 59.904 55.000 9.73 6.82 33.82 3.46
786 3726 2.161831 CGATGCGCTTTCAGTGGAA 58.838 52.632 9.73 0.00 27.73 3.53
787 3727 3.874873 CGATGCGCTTTCAGTGGA 58.125 55.556 9.73 0.00 0.00 4.02
798 3738 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
799 3739 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
800 3740 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
801 3741 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
802 3742 5.828299 ATTTATTTCAGGATTTTCGGCGA 57.172 34.783 4.99 4.99 0.00 5.54
803 3743 6.033341 TGAATTTATTTCAGGATTTTCGGCG 58.967 36.000 0.00 0.00 39.44 6.46
815 3755 7.862372 GCTCGCATTATTCCTGAATTTATTTCA 59.138 33.333 0.00 0.00 42.09 2.69
816 3756 7.862372 TGCTCGCATTATTCCTGAATTTATTTC 59.138 33.333 0.00 0.00 34.72 2.17
817 3757 7.649306 GTGCTCGCATTATTCCTGAATTTATTT 59.351 33.333 0.00 0.00 32.50 1.40
818 3758 7.141363 GTGCTCGCATTATTCCTGAATTTATT 58.859 34.615 0.00 0.00 32.50 1.40
819 3759 6.294176 GGTGCTCGCATTATTCCTGAATTTAT 60.294 38.462 0.00 0.00 32.50 1.40
820 3760 5.008613 GGTGCTCGCATTATTCCTGAATTTA 59.991 40.000 0.00 0.00 32.50 1.40
821 3761 4.202050 GGTGCTCGCATTATTCCTGAATTT 60.202 41.667 0.00 0.00 32.50 1.82
822 3762 3.316308 GGTGCTCGCATTATTCCTGAATT 59.684 43.478 0.00 0.00 32.50 2.17
823 3763 2.880890 GGTGCTCGCATTATTCCTGAAT 59.119 45.455 0.00 0.00 34.93 2.57
824 3764 2.288666 GGTGCTCGCATTATTCCTGAA 58.711 47.619 0.00 0.00 0.00 3.02
825 3765 1.209261 TGGTGCTCGCATTATTCCTGA 59.791 47.619 0.00 0.00 0.00 3.86
826 3766 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
827 3767 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
828 3768 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
829 3769 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
830 3770 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
831 3771 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
832 3772 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
833 3773 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
834 3774 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
835 3775 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
836 3776 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
837 3777 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
838 3778 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
839 3779 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
840 3780 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
856 3796 0.546598 GGTATCCTCAACCCACCAGG 59.453 60.000 0.00 0.00 43.78 4.45
857 3797 1.285280 TGGTATCCTCAACCCACCAG 58.715 55.000 0.00 0.00 34.40 4.00
858 3798 1.979809 ATGGTATCCTCAACCCACCA 58.020 50.000 0.00 0.00 43.10 4.17
859 3799 2.025321 ACAATGGTATCCTCAACCCACC 60.025 50.000 0.00 0.00 36.06 4.61
860 3800 3.279434 GACAATGGTATCCTCAACCCAC 58.721 50.000 0.00 0.00 36.06 4.61
861 3801 2.241176 GGACAATGGTATCCTCAACCCA 59.759 50.000 0.00 0.00 36.06 4.51
862 3802 2.241176 TGGACAATGGTATCCTCAACCC 59.759 50.000 0.00 0.00 36.06 4.11
863 3803 3.279434 GTGGACAATGGTATCCTCAACC 58.721 50.000 0.00 0.00 35.86 3.77
864 3804 3.054361 AGGTGGACAATGGTATCCTCAAC 60.054 47.826 0.00 0.00 35.86 3.18
865 3805 3.189606 AGGTGGACAATGGTATCCTCAA 58.810 45.455 0.00 0.00 35.86 3.02
866 3806 2.845659 AGGTGGACAATGGTATCCTCA 58.154 47.619 0.00 0.00 35.86 3.86
867 3807 4.444449 GGTTAGGTGGACAATGGTATCCTC 60.444 50.000 0.00 0.00 35.86 3.71
868 3808 3.458487 GGTTAGGTGGACAATGGTATCCT 59.542 47.826 0.00 0.00 35.86 3.24
869 3809 3.201266 TGGTTAGGTGGACAATGGTATCC 59.799 47.826 0.00 0.00 35.37 2.59
870 3810 4.497291 TGGTTAGGTGGACAATGGTATC 57.503 45.455 0.00 0.00 0.00 2.24
871 3811 4.726825 AGATGGTTAGGTGGACAATGGTAT 59.273 41.667 0.00 0.00 0.00 2.73
872 3812 4.108570 AGATGGTTAGGTGGACAATGGTA 58.891 43.478 0.00 0.00 0.00 3.25
873 3813 2.919602 AGATGGTTAGGTGGACAATGGT 59.080 45.455 0.00 0.00 0.00 3.55
874 3814 3.054434 TGAGATGGTTAGGTGGACAATGG 60.054 47.826 0.00 0.00 0.00 3.16
875 3815 4.220693 TGAGATGGTTAGGTGGACAATG 57.779 45.455 0.00 0.00 0.00 2.82
876 3816 4.567747 GGTTGAGATGGTTAGGTGGACAAT 60.568 45.833 0.00 0.00 0.00 2.71
877 3817 3.244770 GGTTGAGATGGTTAGGTGGACAA 60.245 47.826 0.00 0.00 0.00 3.18
878 3818 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
879 3819 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
880 3820 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
881 3821 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
882 3822 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
883 3823 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
884 3824 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
885 3825 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
898 3839 0.249868 TGCGAACTCTCAACCTGTGG 60.250 55.000 0.00 0.00 0.00 4.17
899 3840 1.581934 TTGCGAACTCTCAACCTGTG 58.418 50.000 0.00 0.00 0.00 3.66
901 3843 3.125316 GGTTATTGCGAACTCTCAACCTG 59.875 47.826 0.00 0.00 32.92 4.00
903 3845 3.335579 AGGTTATTGCGAACTCTCAACC 58.664 45.455 0.00 0.00 35.31 3.77
904 3846 5.169295 AGTAGGTTATTGCGAACTCTCAAC 58.831 41.667 0.00 0.00 0.00 3.18
905 3847 5.401531 AGTAGGTTATTGCGAACTCTCAA 57.598 39.130 0.00 0.00 0.00 3.02
906 3848 5.651139 ACTAGTAGGTTATTGCGAACTCTCA 59.349 40.000 1.45 0.00 0.00 3.27
936 4209 2.762327 CTGTTTTACCCTAGCCTACGGA 59.238 50.000 0.00 0.00 0.00 4.69
960 6771 5.950883 TGGTAGATCGATCGATTGGTAATC 58.049 41.667 29.89 16.98 34.60 1.75
1062 6884 1.592669 CGTCCATGGCGAGATGTCC 60.593 63.158 19.72 0.00 0.00 4.02
1066 6888 2.797278 GGGTCGTCCATGGCGAGAT 61.797 63.158 25.06 0.00 39.14 2.75
1074 6896 4.082523 CCGTGCAGGGTCGTCCAT 62.083 66.667 17.47 0.00 38.24 3.41
1548 7391 0.119155 TGACCCCAAGGACTCCATCT 59.881 55.000 0.00 0.00 36.73 2.90
1573 7416 7.103641 AGTATGAATGGTGTATTCTGAAACGT 58.896 34.615 0.00 0.00 44.49 3.99
2301 8544 1.597854 CACGTGTGTCCCTGCATGT 60.598 57.895 7.58 0.00 35.47 3.21
2366 8612 6.314896 GCTAGATATGACCTGCATTATGGTTC 59.685 42.308 0.00 0.00 38.44 3.62
2391 8637 2.940890 ATCGCCACCCATGCTAACCG 62.941 60.000 0.00 0.00 0.00 4.44
2593 8860 9.191995 GAACAAACCAATAAATTTCAGGTACAG 57.808 33.333 8.89 5.82 31.10 2.74
2742 9013 2.638325 TCATGGGGTGGTTAGAAGGAA 58.362 47.619 0.00 0.00 0.00 3.36
2906 9182 4.513442 TCCCTCGTGAACCATAAAATCAG 58.487 43.478 0.00 0.00 0.00 2.90
2915 9191 0.400213 AAATGCTCCCTCGTGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
3009 9285 8.757164 TCCATATATGTATGAACGACATGAAC 57.243 34.615 10.79 0.00 40.12 3.18
3135 9601 4.498241 TCTATCTGTGCAAGCAGTAACTG 58.502 43.478 4.42 0.00 37.70 3.16
3177 9643 8.806429 TCTCCTAGTTATGCAAATCATTTTCA 57.194 30.769 0.00 0.00 36.63 2.69
3228 9694 0.249398 CTTCAGTTACCCTCCACCCG 59.751 60.000 0.00 0.00 0.00 5.28
3229 9695 1.278413 GACTTCAGTTACCCTCCACCC 59.722 57.143 0.00 0.00 0.00 4.61
3234 9709 3.371285 GCAATTCGACTTCAGTTACCCTC 59.629 47.826 0.00 0.00 0.00 4.30
3249 9724 1.059657 CGTCGCAAAGTGGCAATTCG 61.060 55.000 0.00 1.15 0.00 3.34
3273 9748 0.249238 CTATCACTGGGCTCGCAGAC 60.249 60.000 18.84 0.00 0.00 3.51
3344 9819 6.982724 ACTGCAAATTTCTCAAAGGAAAGAAG 59.017 34.615 0.00 0.00 38.38 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.