Multiple sequence alignment - TraesCS6B01G159400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G159400 chr6B 100.000 4110 0 0 1 4110 162565987 162570096 0.000000e+00 7590.0
1 TraesCS6B01G159400 chr6B 93.802 242 10 2 1 237 669553271 669553512 3.910000e-95 359.0
2 TraesCS6B01G159400 chr6B 93.373 166 11 0 354 519 561008383 561008548 3.170000e-61 246.0
3 TraesCS6B01G159400 chr6B 90.588 170 16 0 354 523 561142900 561142731 4.130000e-55 226.0
4 TraesCS6B01G159400 chr6B 89.222 167 18 0 354 520 135138874 135139040 4.160000e-50 209.0
5 TraesCS6B01G159400 chr6B 88.750 80 7 2 3829 3907 162617908 162617986 3.380000e-16 97.1
6 TraesCS6B01G159400 chr6D 85.146 2713 189 86 1383 4018 85911383 85913958 0.000000e+00 2580.0
7 TraesCS6B01G159400 chr6D 85.796 697 60 27 528 1209 85910643 85911315 0.000000e+00 702.0
8 TraesCS6B01G159400 chr6D 89.153 295 30 2 1391 1685 79800408 79800700 2.330000e-97 366.0
9 TraesCS6B01G159400 chr6D 89.535 86 9 0 3822 3907 86011888 86011973 4.340000e-20 110.0
10 TraesCS6B01G159400 chr6A 84.601 1604 111 53 2480 4031 103269744 103271263 0.000000e+00 1469.0
11 TraesCS6B01G159400 chr6A 85.083 905 86 19 1355 2237 103268878 103269755 0.000000e+00 878.0
12 TraesCS6B01G159400 chr6A 94.915 236 12 0 974 1209 103268594 103268829 1.800000e-98 370.0
13 TraesCS6B01G159400 chr6A 78.802 217 24 12 3822 4030 103273926 103274128 4.310000e-25 126.0
14 TraesCS6B01G159400 chr7B 95.238 525 18 2 1 518 526713390 526713914 0.000000e+00 824.0
15 TraesCS6B01G159400 chr7B 87.204 211 24 2 984 1194 522073438 522073645 1.910000e-58 237.0
16 TraesCS6B01G159400 chr7B 82.500 280 36 6 2882 3151 522079020 522079296 2.470000e-57 233.0
17 TraesCS6B01G159400 chr7B 95.588 136 6 0 1230 1365 726369849 726369714 6.920000e-53 219.0
18 TraesCS6B01G159400 chr7B 75.261 574 67 33 1997 2517 522074571 522075122 1.940000e-48 204.0
19 TraesCS6B01G159400 chr7B 75.942 345 42 23 2546 2861 522078300 522078632 5.540000e-29 139.0
20 TraesCS6B01G159400 chr5B 95.057 526 19 2 1 519 372239838 372239313 0.000000e+00 821.0
21 TraesCS6B01G159400 chr5B 93.617 141 8 1 1230 1370 118534311 118534172 4.160000e-50 209.0
22 TraesCS6B01G159400 chr3B 90.529 359 28 3 1 353 685432926 685433284 1.730000e-128 470.0
23 TraesCS6B01G159400 chr3B 87.879 297 30 5 1391 1685 106144471 106144763 1.090000e-90 344.0
24 TraesCS6B01G159400 chr3B 96.183 131 5 0 1230 1360 156882335 156882465 8.950000e-52 215.0
25 TraesCS6B01G159400 chr3B 95.489 133 6 0 1224 1356 493648658 493648790 3.220000e-51 213.0
26 TraesCS6B01G159400 chr3B 94.118 136 8 0 1226 1361 582464939 582464804 1.500000e-49 207.0
27 TraesCS6B01G159400 chr3B 93.525 139 8 1 1230 1367 453164917 453164779 5.390000e-49 206.0
28 TraesCS6B01G159400 chr3A 82.883 555 52 24 1 519 672070952 672070405 3.740000e-125 459.0
29 TraesCS6B01G159400 chr3A 87.879 297 30 5 1391 1685 28251775 28252067 1.090000e-90 344.0
30 TraesCS6B01G159400 chr1B 89.972 359 27 4 3 353 677577030 677576673 4.840000e-124 455.0
31 TraesCS6B01G159400 chr2A 82.364 550 59 20 1 519 103574232 103573690 1.050000e-120 444.0
32 TraesCS6B01G159400 chr7D 79.191 692 75 43 2546 3194 492849718 492850383 2.290000e-112 416.0
33 TraesCS6B01G159400 chr7D 88.333 300 29 5 1391 1688 67057847 67057552 5.050000e-94 355.0
34 TraesCS6B01G159400 chr7D 85.776 232 28 4 984 1213 492844264 492844492 1.480000e-59 241.0
35 TraesCS6B01G159400 chr7D 87.574 169 20 1 355 522 620138409 620138241 1.170000e-45 195.0
36 TraesCS6B01G159400 chr7D 79.705 271 31 17 1954 2215 492845357 492845612 1.520000e-39 174.0
37 TraesCS6B01G159400 chr7D 78.776 245 22 11 2286 2517 492845722 492845949 1.990000e-28 137.0
38 TraesCS6B01G159400 chr7D 88.679 53 6 0 1091 1143 578136280 578136332 9.540000e-07 65.8
39 TraesCS6B01G159400 chr5A 87.429 350 35 4 1 342 443781859 443782207 1.070000e-105 394.0
40 TraesCS6B01G159400 chr5A 88.957 163 18 0 354 516 443782308 443782470 6.970000e-48 202.0
41 TraesCS6B01G159400 chr7A 86.034 358 40 7 1 353 26787152 26786800 3.880000e-100 375.0
42 TraesCS6B01G159400 chr7A 88.215 297 29 5 1391 1685 624492182 624492474 2.350000e-92 350.0
43 TraesCS6B01G159400 chr7A 79.283 502 57 23 2733 3194 559206105 559206599 1.440000e-79 307.0
44 TraesCS6B01G159400 chr7A 87.678 211 23 2 984 1194 559199966 559200173 4.100000e-60 243.0
45 TraesCS6B01G159400 chr7A 94.118 136 8 0 1226 1361 77440537 77440672 1.500000e-49 207.0
46 TraesCS6B01G159400 chr7A 79.134 254 29 13 1969 2215 559200999 559201235 1.980000e-33 154.0
47 TraesCS6B01G159400 chr7A 78.138 247 22 12 2286 2517 559201346 559201575 1.200000e-25 128.0
48 TraesCS6B01G159400 chr7A 88.679 53 6 0 1091 1143 670243022 670242970 9.540000e-07 65.8
49 TraesCS6B01G159400 chr5D 89.262 298 30 2 1391 1688 442273025 442272730 5.020000e-99 372.0
50 TraesCS6B01G159400 chr5D 92.233 103 8 0 1016 1118 443476725 443476827 3.310000e-31 147.0
51 TraesCS6B01G159400 chr5D 89.041 73 8 0 1137 1209 443476816 443476888 1.570000e-14 91.6
52 TraesCS6B01G159400 chr3D 89.562 297 24 6 1391 1685 347750699 347750990 1.800000e-98 370.0
53 TraesCS6B01G159400 chr1D 92.771 166 12 0 354 519 298154327 298154492 1.480000e-59 241.0
54 TraesCS6B01G159400 chr1D 91.566 166 14 0 354 519 260225098 260224933 3.200000e-56 230.0
55 TraesCS6B01G159400 chr2B 96.183 131 5 0 1229 1359 89552372 89552502 8.950000e-52 215.0
56 TraesCS6B01G159400 chr4A 95.455 132 6 0 1227 1358 718402698 718402829 1.160000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G159400 chr6B 162565987 162570096 4109 False 7590.00 7590 100.00000 1 4110 1 chr6B.!!$F2 4109
1 TraesCS6B01G159400 chr6D 85910643 85913958 3315 False 1641.00 2580 85.47100 528 4018 2 chr6D.!!$F3 3490
2 TraesCS6B01G159400 chr6A 103268594 103274128 5534 False 710.75 1469 85.85025 974 4031 4 chr6A.!!$F1 3057
3 TraesCS6B01G159400 chr7B 526713390 526713914 524 False 824.00 824 95.23800 1 518 1 chr7B.!!$F1 517
4 TraesCS6B01G159400 chr7B 522073438 522079296 5858 False 203.25 237 80.22675 984 3151 4 chr7B.!!$F2 2167
5 TraesCS6B01G159400 chr5B 372239313 372239838 525 True 821.00 821 95.05700 1 519 1 chr5B.!!$R2 518
6 TraesCS6B01G159400 chr3A 672070405 672070952 547 True 459.00 459 82.88300 1 519 1 chr3A.!!$R1 518
7 TraesCS6B01G159400 chr2A 103573690 103574232 542 True 444.00 444 82.36400 1 519 1 chr2A.!!$R1 518
8 TraesCS6B01G159400 chr7D 492844264 492850383 6119 False 242.00 416 80.86200 984 3194 4 chr7D.!!$F2 2210
9 TraesCS6B01G159400 chr5A 443781859 443782470 611 False 298.00 394 88.19300 1 516 2 chr5A.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 802 0.037160 TCCAATCTGCAGCTGCTCAA 59.963 50.0 36.61 22.80 42.66 3.02 F
1439 1595 0.034186 TACTTGCAGCATCAAGGGGG 60.034 55.0 18.19 0.03 45.72 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2272 2754 1.040339 TTTCTGGCACCAAAACGGCT 61.040 50.0 0.0 0.0 39.03 5.52 R
3405 8226 0.098200 CACGACCAAGAGCATGCATG 59.902 55.0 22.7 22.7 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 282 1.064166 CCTTGCAGATCAGGGGTTCAT 60.064 52.381 0.00 0.00 38.21 2.57
282 292 2.092429 TCAGGGGTTCATATCCTGTTGC 60.092 50.000 8.24 0.00 45.97 4.17
292 362 4.776837 TCATATCCTGTTGCCCACAATTTT 59.223 37.500 0.00 0.00 38.27 1.82
427 526 4.619973 CACCGTATATGCATGCCAAAAAT 58.380 39.130 16.68 3.77 0.00 1.82
454 553 4.905429 TGTAGCACCAGTTCAATGTATGT 58.095 39.130 0.00 0.00 0.00 2.29
520 619 4.974645 ACCTCTGGTGTAATTGACTCAA 57.025 40.909 0.00 0.00 32.98 3.02
521 620 5.304686 ACCTCTGGTGTAATTGACTCAAA 57.695 39.130 0.00 0.00 32.98 2.69
522 621 5.690865 ACCTCTGGTGTAATTGACTCAAAA 58.309 37.500 0.00 0.00 32.98 2.44
523 622 6.126409 ACCTCTGGTGTAATTGACTCAAAAA 58.874 36.000 0.00 0.00 32.98 1.94
524 623 6.039382 ACCTCTGGTGTAATTGACTCAAAAAC 59.961 38.462 0.00 0.00 32.98 2.43
525 624 6.055231 TCTGGTGTAATTGACTCAAAAACG 57.945 37.500 0.00 0.00 0.00 3.60
526 625 5.818336 TCTGGTGTAATTGACTCAAAAACGA 59.182 36.000 0.00 0.00 0.00 3.85
530 629 6.259638 GTGTAATTGACTCAAAAACGAACCA 58.740 36.000 0.00 0.00 0.00 3.67
554 654 2.531927 AAGTTGACGCGCATGCATGG 62.532 55.000 27.34 17.93 42.97 3.66
556 656 2.752939 TTGACGCGCATGCATGGAG 61.753 57.895 27.34 19.88 42.97 3.86
557 657 4.602696 GACGCGCATGCATGGAGC 62.603 66.667 27.34 18.87 42.97 4.70
572 673 0.179062 GGAGCAGCTAGGTGATGGTG 60.179 60.000 25.66 0.00 43.25 4.17
573 674 0.826715 GAGCAGCTAGGTGATGGTGA 59.173 55.000 25.66 0.00 43.25 4.02
575 676 2.630098 GAGCAGCTAGGTGATGGTGATA 59.370 50.000 25.66 0.00 43.25 2.15
589 691 0.538977 GTGATAGGCCAGCCATGCAT 60.539 55.000 12.03 0.00 38.92 3.96
590 692 0.538746 TGATAGGCCAGCCATGCATG 60.539 55.000 20.19 20.19 38.92 4.06
593 695 2.650226 TAGGCCAGCCATGCATGCAT 62.650 55.000 27.46 27.46 38.92 3.96
608 710 2.194212 GCATGCATCCTCCTGCTGG 61.194 63.158 14.21 2.58 42.75 4.85
625 727 1.743252 GGAGCTCCAAGCCTGAACG 60.743 63.158 28.43 0.00 43.77 3.95
626 728 2.359230 AGCTCCAAGCCTGAACGC 60.359 61.111 0.00 0.00 43.77 4.84
627 729 2.669569 GCTCCAAGCCTGAACGCA 60.670 61.111 0.00 0.00 34.48 5.24
628 730 2.970974 GCTCCAAGCCTGAACGCAC 61.971 63.158 0.00 0.00 34.48 5.34
629 731 2.664851 TCCAAGCCTGAACGCACG 60.665 61.111 0.00 0.00 0.00 5.34
630 732 3.726517 CCAAGCCTGAACGCACGG 61.727 66.667 0.00 0.00 0.00 4.94
631 733 3.726517 CAAGCCTGAACGCACGGG 61.727 66.667 3.32 3.32 39.16 5.28
655 760 2.022129 AAGAGCGTTCGTTGCCTCG 61.022 57.895 0.00 0.00 0.00 4.63
656 761 2.694829 AAGAGCGTTCGTTGCCTCGT 62.695 55.000 0.00 0.00 0.00 4.18
657 762 2.717809 GAGCGTTCGTTGCCTCGTC 61.718 63.158 0.00 0.00 0.00 4.20
659 764 3.000080 GCGTTCGTTGCCTCGTCTG 62.000 63.158 0.00 0.00 0.00 3.51
661 766 1.853319 GTTCGTTGCCTCGTCTGTG 59.147 57.895 0.00 0.00 0.00 3.66
672 779 2.652079 CGTCTGTGACACGCAGCTG 61.652 63.158 10.11 10.11 41.21 4.24
674 781 0.668706 GTCTGTGACACGCAGCTGAT 60.669 55.000 20.43 0.42 41.21 2.90
689 796 1.475392 GCTGATCTCCAATCTGCAGCT 60.475 52.381 9.47 0.00 43.81 4.24
692 799 0.547075 ATCTCCAATCTGCAGCTGCT 59.453 50.000 36.61 16.83 42.66 4.24
695 802 0.037160 TCCAATCTGCAGCTGCTCAA 59.963 50.000 36.61 22.80 42.66 3.02
704 811 0.322277 CAGCTGCTCAACACCCATCT 60.322 55.000 0.00 0.00 0.00 2.90
712 819 0.320683 CAACACCCATCTCGTGCAGA 60.321 55.000 0.00 0.00 34.45 4.26
713 820 0.320771 AACACCCATCTCGTGCAGAC 60.321 55.000 0.00 0.00 34.45 3.51
714 821 1.293179 CACCCATCTCGTGCAGACA 59.707 57.895 0.00 0.00 32.26 3.41
715 822 0.320683 CACCCATCTCGTGCAGACAA 60.321 55.000 0.00 0.00 32.26 3.18
716 823 0.615331 ACCCATCTCGTGCAGACAAT 59.385 50.000 0.00 0.00 32.26 2.71
717 824 1.012086 CCCATCTCGTGCAGACAATG 58.988 55.000 0.00 0.00 32.26 2.82
742 849 7.935804 CAAATATTAATTTGGCTTTTGTGCG 57.064 32.000 0.00 0.00 45.49 5.34
743 850 7.517321 CAAATATTAATTTGGCTTTTGTGCGT 58.483 30.769 0.00 0.00 45.49 5.24
744 851 4.988708 ATTAATTTGGCTTTTGTGCGTG 57.011 36.364 0.00 0.00 0.00 5.34
745 852 2.307934 AATTTGGCTTTTGTGCGTGT 57.692 40.000 0.00 0.00 0.00 4.49
746 853 1.569708 ATTTGGCTTTTGTGCGTGTG 58.430 45.000 0.00 0.00 0.00 3.82
748 855 1.315981 TTGGCTTTTGTGCGTGTGGA 61.316 50.000 0.00 0.00 0.00 4.02
749 856 1.299089 GGCTTTTGTGCGTGTGGAC 60.299 57.895 0.00 0.00 36.89 4.02
750 857 1.724582 GGCTTTTGTGCGTGTGGACT 61.725 55.000 0.00 0.00 37.34 3.85
752 859 1.826327 CTTTTGTGCGTGTGGACTTG 58.174 50.000 0.00 0.00 37.34 3.16
754 861 1.308783 TTTGTGCGTGTGGACTTGCA 61.309 50.000 0.00 0.00 37.34 4.08
756 863 2.124942 TGCGTGTGGACTTGCACA 60.125 55.556 0.00 0.00 35.51 4.57
757 864 1.746991 TGCGTGTGGACTTGCACAA 60.747 52.632 5.02 0.00 35.51 3.33
758 865 1.298339 GCGTGTGGACTTGCACAAC 60.298 57.895 5.02 0.00 35.51 3.32
759 866 1.987704 GCGTGTGGACTTGCACAACA 61.988 55.000 5.02 0.00 35.51 3.33
760 867 0.449786 CGTGTGGACTTGCACAACAA 59.550 50.000 5.02 0.00 35.51 2.83
767 874 2.278726 TTGCACAACAAGCAGCGC 60.279 55.556 0.00 0.00 43.75 5.92
768 875 2.773745 TTGCACAACAAGCAGCGCT 61.774 52.632 2.64 2.64 43.75 5.92
769 876 2.428071 GCACAACAAGCAGCGCTC 60.428 61.111 7.13 2.24 38.25 5.03
784 891 2.284921 CTCCTGCTCACCTCCCCA 60.285 66.667 0.00 0.00 0.00 4.96
793 900 4.572571 ACCTCCCCAAAACGCGCA 62.573 61.111 5.73 0.00 0.00 6.09
806 913 2.237066 CGCGCACACAGAGTCACAA 61.237 57.895 8.75 0.00 0.00 3.33
809 916 1.135046 CGCACACAGAGTCACAAGAG 58.865 55.000 0.00 0.00 0.00 2.85
821 928 3.251245 AGTCACAAGAGACAGAGTACACG 59.749 47.826 0.00 0.00 40.98 4.49
830 937 1.802960 ACAGAGTACACGGTACACTCG 59.197 52.381 14.11 10.96 42.80 4.18
840 947 0.606604 GGTACACTCGACACCACCAT 59.393 55.000 0.00 0.00 32.32 3.55
860 967 1.276622 TCTCCTCTACCAAACCCAGC 58.723 55.000 0.00 0.00 0.00 4.85
871 978 0.185901 AAACCCAGCCAGCTGAAGAA 59.814 50.000 21.01 0.00 46.30 2.52
872 979 0.251077 AACCCAGCCAGCTGAAGAAG 60.251 55.000 21.01 3.25 46.30 2.85
873 980 1.130054 ACCCAGCCAGCTGAAGAAGA 61.130 55.000 21.01 0.00 46.30 2.87
882 989 4.802248 GCCAGCTGAAGAAGAAGAAGAAGA 60.802 45.833 17.39 0.00 0.00 2.87
891 998 4.530161 AGAAGAAGAAGAAGAAGCTAGCCA 59.470 41.667 12.13 0.00 0.00 4.75
901 1008 3.453988 GCTAGCCAGCCGATCTCT 58.546 61.111 2.29 0.00 42.37 3.10
906 1013 0.463620 AGCCAGCCGATCTCTTTCTC 59.536 55.000 0.00 0.00 0.00 2.87
907 1014 0.463620 GCCAGCCGATCTCTTTCTCT 59.536 55.000 0.00 0.00 0.00 3.10
908 1015 1.134551 GCCAGCCGATCTCTTTCTCTT 60.135 52.381 0.00 0.00 0.00 2.85
940 1047 4.287781 TTGCGCGGGTCGACTTCA 62.288 61.111 16.46 3.81 41.67 3.02
1038 1149 2.682952 TCGAGATAAAGCGGATCGAC 57.317 50.000 0.00 0.00 37.48 4.20
1153 1264 1.380403 CGTCATCGTGCTCTCCTCCT 61.380 60.000 0.00 0.00 0.00 3.69
1199 1310 3.511595 CGGCGCCGAGTAGGTACA 61.512 66.667 44.86 0.00 43.70 2.90
1225 1375 3.305335 CCAACTGCTTGGTTAACATCACC 60.305 47.826 8.10 0.00 42.09 4.02
1227 1377 2.884639 ACTGCTTGGTTAACATCACCAC 59.115 45.455 8.10 0.00 44.34 4.16
1231 1381 3.439129 GCTTGGTTAACATCACCACCTAC 59.561 47.826 8.10 0.00 44.34 3.18
1232 1382 4.806286 GCTTGGTTAACATCACCACCTACT 60.806 45.833 8.10 0.00 44.34 2.57
1233 1383 4.546829 TGGTTAACATCACCACCTACTC 57.453 45.455 8.10 0.00 39.53 2.59
1234 1384 3.262405 TGGTTAACATCACCACCTACTCC 59.738 47.826 8.10 0.00 39.53 3.85
1235 1385 3.370209 GGTTAACATCACCACCTACTCCC 60.370 52.174 8.10 0.00 34.04 4.30
1236 1386 2.344093 AACATCACCACCTACTCCCT 57.656 50.000 0.00 0.00 0.00 4.20
1237 1387 1.867363 ACATCACCACCTACTCCCTC 58.133 55.000 0.00 0.00 0.00 4.30
1238 1388 1.123928 CATCACCACCTACTCCCTCC 58.876 60.000 0.00 0.00 0.00 4.30
1239 1389 0.397254 ATCACCACCTACTCCCTCCG 60.397 60.000 0.00 0.00 0.00 4.63
1240 1390 1.305046 CACCACCTACTCCCTCCGT 60.305 63.158 0.00 0.00 0.00 4.69
1241 1391 0.903454 CACCACCTACTCCCTCCGTT 60.903 60.000 0.00 0.00 0.00 4.44
1242 1392 0.614134 ACCACCTACTCCCTCCGTTC 60.614 60.000 0.00 0.00 0.00 3.95
1243 1393 1.328430 CCACCTACTCCCTCCGTTCC 61.328 65.000 0.00 0.00 0.00 3.62
1244 1394 1.379576 ACCTACTCCCTCCGTTCCG 60.380 63.158 0.00 0.00 0.00 4.30
1245 1395 1.077212 CCTACTCCCTCCGTTCCGA 60.077 63.158 0.00 0.00 0.00 4.55
1246 1396 0.682209 CCTACTCCCTCCGTTCCGAA 60.682 60.000 0.00 0.00 0.00 4.30
1247 1397 1.400737 CTACTCCCTCCGTTCCGAAT 58.599 55.000 0.00 0.00 0.00 3.34
1248 1398 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1249 1399 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1250 1400 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1251 1401 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1252 1402 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1253 1403 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1254 1404 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1255 1405 3.332034 CCTCCGTTCCGAATTACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
1256 1406 3.749609 CCTCCGTTCCGAATTACTTGTTT 59.250 43.478 0.00 0.00 0.00 2.83
1257 1407 4.214758 CCTCCGTTCCGAATTACTTGTTTT 59.785 41.667 0.00 0.00 0.00 2.43
1258 1408 5.098218 TCCGTTCCGAATTACTTGTTTTG 57.902 39.130 0.00 0.00 0.00 2.44
1259 1409 4.023878 TCCGTTCCGAATTACTTGTTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
1260 1410 4.023878 CCGTTCCGAATTACTTGTTTTGGA 60.024 41.667 0.00 0.00 34.28 3.53
1261 1411 5.335348 CCGTTCCGAATTACTTGTTTTGGAT 60.335 40.000 0.00 0.00 35.73 3.41
1262 1412 6.146898 CGTTCCGAATTACTTGTTTTGGATT 58.853 36.000 0.00 0.00 35.73 3.01
1263 1413 6.639279 CGTTCCGAATTACTTGTTTTGGATTT 59.361 34.615 0.00 0.00 35.73 2.17
1264 1414 7.358023 CGTTCCGAATTACTTGTTTTGGATTTG 60.358 37.037 0.00 0.00 35.73 2.32
1265 1415 7.045126 TCCGAATTACTTGTTTTGGATTTGT 57.955 32.000 0.00 0.00 31.71 2.83
1266 1416 7.142680 TCCGAATTACTTGTTTTGGATTTGTC 58.857 34.615 0.00 0.00 31.71 3.18
1267 1417 7.013846 TCCGAATTACTTGTTTTGGATTTGTCT 59.986 33.333 0.00 0.00 31.71 3.41
1268 1418 8.293867 CCGAATTACTTGTTTTGGATTTGTCTA 58.706 33.333 0.00 0.00 0.00 2.59
1269 1419 9.329913 CGAATTACTTGTTTTGGATTTGTCTAG 57.670 33.333 0.00 0.00 0.00 2.43
1274 1424 8.918202 ACTTGTTTTGGATTTGTCTAGATACA 57.082 30.769 0.00 0.00 0.00 2.29
1275 1425 9.003658 ACTTGTTTTGGATTTGTCTAGATACAG 57.996 33.333 0.00 0.00 0.00 2.74
1276 1426 9.219603 CTTGTTTTGGATTTGTCTAGATACAGA 57.780 33.333 0.00 0.00 0.00 3.41
1277 1427 9.739276 TTGTTTTGGATTTGTCTAGATACAGAT 57.261 29.630 0.00 0.00 0.00 2.90
1278 1428 9.166173 TGTTTTGGATTTGTCTAGATACAGATG 57.834 33.333 0.00 0.00 0.00 2.90
1279 1429 9.167311 GTTTTGGATTTGTCTAGATACAGATGT 57.833 33.333 0.00 0.00 0.00 3.06
1331 1481 9.530633 ACATCCGTATCTAGACAAATTTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
1332 1482 9.529325 CATCCGTATCTAGACAAATTTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
1334 1484 9.582431 TCCGTATCTAGACAAATTTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
1335 1485 9.367444 CCGTATCTAGACAAATTTAAGACAAGT 57.633 33.333 0.00 0.00 0.00 3.16
1343 1493 9.280174 AGACAAATTTAAGACAAGTAATTCGGA 57.720 29.630 0.00 0.00 0.00 4.55
1344 1494 9.887406 GACAAATTTAAGACAAGTAATTCGGAA 57.113 29.630 0.00 0.00 0.00 4.30
1345 1495 9.673454 ACAAATTTAAGACAAGTAATTCGGAAC 57.327 29.630 0.00 0.00 0.00 3.62
1372 1522 3.126000 GGAGTAGTTGCTTGCTTGATCAC 59.874 47.826 0.00 0.00 0.00 3.06
1373 1523 3.077359 AGTAGTTGCTTGCTTGATCACC 58.923 45.455 0.00 0.00 0.00 4.02
1379 1529 2.008329 GCTTGCTTGATCACCTCTCTG 58.992 52.381 0.00 0.00 0.00 3.35
1380 1530 2.354503 GCTTGCTTGATCACCTCTCTGA 60.355 50.000 0.00 0.00 0.00 3.27
1381 1531 3.523547 CTTGCTTGATCACCTCTCTGAG 58.476 50.000 0.00 0.00 0.00 3.35
1385 1538 3.429272 GCTTGATCACCTCTCTGAGTCTG 60.429 52.174 4.32 0.00 0.00 3.51
1398 1551 0.811915 GAGTCTGAGGCAGCTTCGTA 59.188 55.000 0.00 0.00 0.00 3.43
1405 1558 1.666189 GAGGCAGCTTCGTATTGTTCC 59.334 52.381 0.00 0.00 0.00 3.62
1414 1567 4.271291 GCTTCGTATTGTTCCTCTTCATCC 59.729 45.833 0.00 0.00 0.00 3.51
1416 1569 3.697542 TCGTATTGTTCCTCTTCATCCGA 59.302 43.478 0.00 0.00 0.00 4.55
1439 1595 0.034186 TACTTGCAGCATCAAGGGGG 60.034 55.000 18.19 0.03 45.72 5.40
1500 1656 0.537188 ACCGAGCAGTATGAGGTTGG 59.463 55.000 0.00 0.00 42.47 3.77
1502 1658 1.066143 CCGAGCAGTATGAGGTTGGTT 60.066 52.381 0.00 0.00 39.69 3.67
1520 1676 3.261643 TGGTTGCTGCTTCTCTATCTTGA 59.738 43.478 0.00 0.00 0.00 3.02
1527 1684 5.528043 TGCTTCTCTATCTTGACTCCATC 57.472 43.478 0.00 0.00 0.00 3.51
1533 1692 4.163427 TCTATCTTGACTCCATCCCATCC 58.837 47.826 0.00 0.00 0.00 3.51
1555 1714 8.999431 CATCCTTTTCTTTAGCTGTAACACTTA 58.001 33.333 0.00 0.00 0.00 2.24
1560 1719 5.706916 TCTTTAGCTGTAACACTTACTCCG 58.293 41.667 0.00 0.00 37.06 4.63
1591 1849 5.776173 TTTGGCTGATTTTTCTCGGTTTA 57.224 34.783 0.00 0.00 0.00 2.01
1593 1851 5.776173 TGGCTGATTTTTCTCGGTTTAAA 57.224 34.783 0.00 0.00 0.00 1.52
1685 1948 6.433847 TCAGGTCAATCACTTTCCTTCTTA 57.566 37.500 0.00 0.00 0.00 2.10
1686 1949 6.837312 TCAGGTCAATCACTTTCCTTCTTAA 58.163 36.000 0.00 0.00 0.00 1.85
1737 2040 0.750911 GGGGAATCTCCAGCAAGCTG 60.751 60.000 14.91 14.91 38.64 4.24
1745 2050 3.791539 CAGCAAGCTGGCTAGACG 58.208 61.111 17.23 0.00 43.68 4.18
1747 2052 2.512515 GCAAGCTGGCTAGACGGG 60.513 66.667 5.60 0.00 0.00 5.28
1782 2087 4.340894 TCGACTTGAATTAACATGCTGC 57.659 40.909 0.00 0.00 0.00 5.25
1819 2124 1.318158 GCAGGCAAAGGATGGGTGAG 61.318 60.000 0.00 0.00 0.00 3.51
1841 2146 4.373116 TGGACGCGCTGGAGTTCC 62.373 66.667 5.73 4.00 0.00 3.62
1940 2254 3.065925 GTGCTCATTAACTGATTCAGGCC 59.934 47.826 17.66 0.00 35.51 5.19
1945 2259 2.961526 TAACTGATTCAGGCCTCGAC 57.038 50.000 17.66 0.00 35.51 4.20
1988 2379 3.421844 TCGAGTTCTCCATCTCTGACAA 58.578 45.455 0.00 0.00 0.00 3.18
2110 2561 7.023575 CCTGCTTTAACAACATAACAGCTTAG 58.976 38.462 0.00 0.00 0.00 2.18
2111 2562 6.378582 TGCTTTAACAACATAACAGCTTAGC 58.621 36.000 0.00 0.00 0.00 3.09
2122 2573 6.481644 ACATAACAGCTTAGCTAATCTTCTGC 59.518 38.462 6.35 5.84 36.40 4.26
2251 2714 7.695055 TGGATTGGACTAGTTTATTTCAGGAA 58.305 34.615 0.00 0.00 0.00 3.36
2272 2754 6.212388 AGGAATTGCCCAATTTTGTGTACATA 59.788 34.615 0.00 0.00 40.77 2.29
2293 2786 1.851658 CCGTTTTGGTGCCAGAAAAG 58.148 50.000 0.00 1.80 0.00 2.27
2338 2831 0.472044 TACCTTGCCTTGTGTCAGCA 59.528 50.000 0.00 0.00 33.97 4.41
2340 2833 0.535780 CCTTGCCTTGTGTCAGCAGA 60.536 55.000 0.00 0.00 37.89 4.26
2360 2853 5.739161 GCAGACACTTGTTACAGTTTCTTTG 59.261 40.000 2.52 0.00 32.49 2.77
2372 2865 8.856247 GTTACAGTTTCTTTGTTTGGTTAGTTG 58.144 33.333 0.00 0.00 0.00 3.16
2373 2866 7.222000 ACAGTTTCTTTGTTTGGTTAGTTGA 57.778 32.000 0.00 0.00 0.00 3.18
2374 2867 7.662897 ACAGTTTCTTTGTTTGGTTAGTTGAA 58.337 30.769 0.00 0.00 0.00 2.69
2375 2868 7.597369 ACAGTTTCTTTGTTTGGTTAGTTGAAC 59.403 33.333 0.00 0.00 37.31 3.18
2376 2869 7.812669 CAGTTTCTTTGTTTGGTTAGTTGAACT 59.187 33.333 2.37 2.37 38.21 3.01
2377 2870 8.364894 AGTTTCTTTGTTTGGTTAGTTGAACTT 58.635 29.630 1.97 0.00 38.21 2.66
2378 2871 9.628746 GTTTCTTTGTTTGGTTAGTTGAACTTA 57.371 29.630 1.97 0.00 38.21 2.24
2379 2872 9.849166 TTTCTTTGTTTGGTTAGTTGAACTTAG 57.151 29.630 1.97 0.00 38.21 2.18
2380 2873 8.570068 TCTTTGTTTGGTTAGTTGAACTTAGT 57.430 30.769 1.97 0.00 38.21 2.24
2381 2874 9.016438 TCTTTGTTTGGTTAGTTGAACTTAGTT 57.984 29.630 1.97 0.00 38.21 2.24
2409 2902 5.398603 TGTCACTGTTCAAAAACCATGTT 57.601 34.783 0.00 0.00 34.28 2.71
2432 2928 7.068103 TGTTTTCACCAGATCTTTGTATTGTGT 59.932 33.333 0.00 0.00 0.00 3.72
2433 2929 6.801539 TTCACCAGATCTTTGTATTGTGTC 57.198 37.500 0.00 0.00 0.00 3.67
2463 2976 8.716646 TTTGGTCACATTGTATATAGTCTGTG 57.283 34.615 10.27 10.27 36.27 3.66
2524 3041 1.399714 ATGCATGCATGGAGAACAGG 58.600 50.000 31.74 0.00 35.03 4.00
2566 6900 6.752335 TTTCATTCTGAACGCATCTTTTTG 57.248 33.333 0.00 0.00 35.89 2.44
2572 6906 4.039151 TGAACGCATCTTTTTGCTTGAA 57.961 36.364 0.00 0.00 40.54 2.69
2625 6967 3.243643 GCAACAAAAGAGCATGTCAACAC 59.756 43.478 0.00 0.00 0.00 3.32
2634 6976 3.138304 AGCATGTCAACACGTGTGTATT 58.862 40.909 24.16 2.75 44.13 1.89
2637 6979 3.953874 TGTCAACACGTGTGTATTTGG 57.046 42.857 24.16 6.30 44.13 3.28
2640 6982 2.881513 TCAACACGTGTGTATTTGGCAT 59.118 40.909 24.16 0.00 44.13 4.40
2646 6988 2.408032 CGTGTGTATTTGGCATTTGTGC 59.592 45.455 0.00 0.00 0.00 4.57
2666 7014 2.030007 GCCATTTGCAAGAGTGTAGCAA 60.030 45.455 0.00 0.00 45.53 3.91
2671 7019 4.600692 TTGCAAGAGTGTAGCAAGTCTA 57.399 40.909 0.00 0.00 42.71 2.59
2722 7079 1.679032 GGTGCCTCCTGGTGTACAATC 60.679 57.143 0.00 0.00 35.27 2.67
2723 7080 1.279271 GTGCCTCCTGGTGTACAATCT 59.721 52.381 0.00 0.00 35.27 2.40
2724 7081 1.278985 TGCCTCCTGGTGTACAATCTG 59.721 52.381 0.00 0.00 35.27 2.90
2725 7082 1.555075 GCCTCCTGGTGTACAATCTGA 59.445 52.381 0.00 0.00 35.27 3.27
2726 7083 2.678190 GCCTCCTGGTGTACAATCTGAC 60.678 54.545 0.00 0.00 35.27 3.51
2728 7085 3.118956 CCTCCTGGTGTACAATCTGACTC 60.119 52.174 0.00 0.00 0.00 3.36
2731 7088 2.492088 CTGGTGTACAATCTGACTCCGA 59.508 50.000 0.00 0.00 32.92 4.55
2764 7138 9.535878 TTGCATTCGTGTACTAATAATACATGA 57.464 29.630 0.00 0.24 43.54 3.07
2812 7195 1.216710 GAAGCACTCCGAGGAGGTG 59.783 63.158 21.79 17.12 45.88 4.00
2825 7208 3.005472 CGAGGAGGTGTACAAGAAACTGA 59.995 47.826 0.00 0.00 0.00 3.41
3119 7904 2.540101 CTCTTCGGTTAATCGGTCATGC 59.460 50.000 8.52 0.00 0.00 4.06
3167 7955 9.731819 TCAAGTGATCGATCAAGTAATAACTAC 57.268 33.333 28.83 12.20 38.75 2.73
3192 7983 8.739972 ACTACAACAAAAGAAAAATCTCTGTGT 58.260 29.630 0.00 0.00 0.00 3.72
3193 7984 7.816945 ACAACAAAAGAAAAATCTCTGTGTG 57.183 32.000 0.00 0.00 29.42 3.82
3194 7985 7.601856 ACAACAAAAGAAAAATCTCTGTGTGA 58.398 30.769 0.00 0.00 29.42 3.58
3195 7986 7.756722 ACAACAAAAGAAAAATCTCTGTGTGAG 59.243 33.333 0.00 0.00 43.96 3.51
3196 7987 7.396540 ACAAAAGAAAAATCTCTGTGTGAGT 57.603 32.000 0.00 0.00 43.13 3.41
3197 7988 7.830739 ACAAAAGAAAAATCTCTGTGTGAGTT 58.169 30.769 0.00 0.00 43.13 3.01
3198 7989 8.956426 ACAAAAGAAAAATCTCTGTGTGAGTTA 58.044 29.630 0.00 0.00 43.13 2.24
3199 7990 9.226345 CAAAAGAAAAATCTCTGTGTGAGTTAC 57.774 33.333 0.00 0.00 43.13 2.50
3200 7991 8.506168 AAAGAAAAATCTCTGTGTGAGTTACA 57.494 30.769 0.00 0.00 43.13 2.41
3357 8174 1.134340 TGGTACGGTGTGGGAATATGC 60.134 52.381 0.00 0.00 0.00 3.14
3369 8186 2.368439 GGAATATGCAAGACAGGCACA 58.632 47.619 0.00 0.00 45.23 4.57
3396 8217 9.331282 GATTAGCAATTTTATGGAGTAGTCAGT 57.669 33.333 0.00 0.00 0.00 3.41
3398 8219 6.711277 AGCAATTTTATGGAGTAGTCAGTCA 58.289 36.000 0.00 0.00 0.00 3.41
3399 8220 6.820656 AGCAATTTTATGGAGTAGTCAGTCAG 59.179 38.462 0.00 0.00 0.00 3.51
3400 8221 6.818644 GCAATTTTATGGAGTAGTCAGTCAGA 59.181 38.462 0.00 0.00 0.00 3.27
3468 8289 1.248785 ACTTGCTCTTGCCATGCCTG 61.249 55.000 0.00 0.00 38.71 4.85
3480 8301 0.750911 CATGCCTGCTCTTCCCCTTC 60.751 60.000 0.00 0.00 0.00 3.46
3540 8361 0.248289 GGCAGCAATGCAAGTCCATT 59.752 50.000 8.35 0.00 35.90 3.16
3550 8371 1.806542 GCAAGTCCATTGTCGACACAT 59.193 47.619 19.90 12.18 41.29 3.21
3562 8383 3.487942 TGTCGACACATTACAACTCGTTG 59.512 43.478 15.76 8.16 45.58 4.10
3600 8442 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
3601 8443 5.362143 TCTCTCTCTCTCTCTCTCTCTCTTG 59.638 48.000 0.00 0.00 0.00 3.02
3602 8444 4.125703 CTCTCTCTCTCTCTCTCTCTTGC 58.874 52.174 0.00 0.00 0.00 4.01
3603 8445 3.519107 TCTCTCTCTCTCTCTCTCTTGCA 59.481 47.826 0.00 0.00 0.00 4.08
3604 8446 4.019411 TCTCTCTCTCTCTCTCTCTTGCAA 60.019 45.833 0.00 0.00 0.00 4.08
3605 8447 4.858850 TCTCTCTCTCTCTCTCTTGCAAT 58.141 43.478 0.00 0.00 0.00 3.56
3606 8448 5.263599 TCTCTCTCTCTCTCTCTTGCAATT 58.736 41.667 0.00 0.00 0.00 2.32
3607 8449 5.716228 TCTCTCTCTCTCTCTCTTGCAATTT 59.284 40.000 0.00 0.00 0.00 1.82
3608 8450 5.964758 TCTCTCTCTCTCTCTTGCAATTTC 58.035 41.667 0.00 0.00 0.00 2.17
3609 8451 5.083533 TCTCTCTCTCTCTTGCAATTTCC 57.916 43.478 0.00 0.00 0.00 3.13
3610 8452 4.529769 TCTCTCTCTCTCTTGCAATTTCCA 59.470 41.667 0.00 0.00 0.00 3.53
3611 8453 5.189342 TCTCTCTCTCTCTTGCAATTTCCAT 59.811 40.000 0.00 0.00 0.00 3.41
3612 8454 5.183969 TCTCTCTCTCTTGCAATTTCCATG 58.816 41.667 0.00 0.00 0.00 3.66
3613 8455 3.693085 TCTCTCTCTTGCAATTTCCATGC 59.307 43.478 0.00 0.00 44.08 4.06
3614 8456 3.693807 TCTCTCTTGCAATTTCCATGCT 58.306 40.909 0.00 0.00 44.14 3.79
3615 8457 4.847198 TCTCTCTTGCAATTTCCATGCTA 58.153 39.130 0.00 0.00 44.14 3.49
3616 8458 5.443283 TCTCTCTTGCAATTTCCATGCTAT 58.557 37.500 0.00 0.00 44.14 2.97
3617 8459 5.530171 TCTCTCTTGCAATTTCCATGCTATC 59.470 40.000 0.00 0.00 44.14 2.08
3618 8460 5.443283 TCTCTTGCAATTTCCATGCTATCT 58.557 37.500 0.00 0.00 44.14 1.98
3629 8471 5.584551 TCCATGCTATCTGTCTAGGTCTA 57.415 43.478 0.00 0.00 0.00 2.59
3667 8511 8.628882 TCTGTGATGTGTTCGTACAAATATAG 57.371 34.615 0.00 0.00 32.20 1.31
3674 8518 4.496539 TGTTCGTACAAATATAGCGTGTCG 59.503 41.667 0.00 0.00 0.00 4.35
3676 8520 4.274069 TCGTACAAATATAGCGTGTCGTC 58.726 43.478 0.00 0.00 0.00 4.20
3682 8526 1.904144 TATAGCGTGTCGTCTTGTGC 58.096 50.000 0.00 0.00 0.00 4.57
3707 8551 2.100252 TGTTTTTCGTGAGAGAGGACGT 59.900 45.455 0.00 0.00 43.69 4.34
3708 8552 3.316029 TGTTTTTCGTGAGAGAGGACGTA 59.684 43.478 0.00 0.00 43.69 3.57
3709 8553 3.549299 TTTTCGTGAGAGAGGACGTAC 57.451 47.619 0.00 0.00 43.69 3.67
3710 8554 1.073964 TTCGTGAGAGAGGACGTACG 58.926 55.000 15.01 15.01 43.69 3.67
3713 8557 1.737029 CGTGAGAGAGGACGTACGGTA 60.737 57.143 21.06 0.00 0.00 4.02
3729 8573 2.186076 CGGTATCGTCTTGTTGAGCTC 58.814 52.381 6.82 6.82 0.00 4.09
3737 8581 1.827969 TCTTGTTGAGCTCTAGCCCTC 59.172 52.381 16.19 0.00 43.38 4.30
3796 8640 4.797349 GTGCTTGCTTCTCTATTTTGCATC 59.203 41.667 0.00 0.00 33.50 3.91
3804 8648 0.311790 CTATTTTGCATCGCCGGCAT 59.688 50.000 28.98 16.24 41.58 4.40
3816 8660 1.464608 CGCCGGCATTACCATAAGATG 59.535 52.381 28.98 0.00 39.03 2.90
3817 8661 2.778299 GCCGGCATTACCATAAGATGA 58.222 47.619 24.80 0.00 39.03 2.92
3819 8663 2.744202 CCGGCATTACCATAAGATGAGC 59.256 50.000 0.00 0.00 39.03 4.26
3822 8666 4.142752 CGGCATTACCATAAGATGAGCATG 60.143 45.833 0.00 0.00 39.03 4.06
3840 8684 0.895100 TGCACCACCAGCTCCATTTC 60.895 55.000 0.00 0.00 0.00 2.17
3870 8714 2.028748 CCATCAAAGGAGGCAACCAAAG 60.029 50.000 3.78 0.00 37.17 2.77
3970 8825 2.131067 CCAGCCATGCATGCATCCA 61.131 57.895 30.07 3.65 33.90 3.41
4042 8900 0.244450 ATGCATGCTTGAACCAACGG 59.756 50.000 20.33 0.00 0.00 4.44
4043 8901 0.821301 TGCATGCTTGAACCAACGGA 60.821 50.000 20.33 0.00 0.00 4.69
4069 8954 4.446371 TCTGGTAGTACTACGTAGAAGCC 58.554 47.826 28.74 20.04 36.94 4.35
4077 8962 0.169672 TACGTAGAAGCCGTGTGAGC 59.830 55.000 0.00 0.00 39.22 4.26
4086 8971 2.632544 CCGTGTGAGCCGGTCTGTA 61.633 63.158 1.90 0.00 40.59 2.74
4087 8972 1.443872 CGTGTGAGCCGGTCTGTAC 60.444 63.158 1.90 3.44 0.00 2.90
4088 8973 1.863662 CGTGTGAGCCGGTCTGTACT 61.864 60.000 1.90 0.00 0.00 2.73
4089 8974 1.171308 GTGTGAGCCGGTCTGTACTA 58.829 55.000 1.90 0.00 0.00 1.82
4090 8975 1.135460 GTGTGAGCCGGTCTGTACTAC 60.135 57.143 1.90 0.00 0.00 2.73
4094 8979 1.603326 GAGCCGGTCTGTACTACTAGC 59.397 57.143 1.90 0.83 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
308 378 6.605471 ATTTTATGGAAAACCCCTCAGAAC 57.395 37.500 0.00 0.00 37.37 3.01
427 526 5.373222 ACATTGAACTGGTGCTACAACTTA 58.627 37.500 0.00 0.00 0.00 2.24
454 553 2.685897 ACTTTAGTGCCAAAACTTGCGA 59.314 40.909 0.00 0.00 0.00 5.10
485 584 1.541588 CAGAGGTGCTAAAACTTGGCC 59.458 52.381 0.00 0.00 36.15 5.36
519 618 4.687018 GTCAACTTTTGGTGGTTCGTTTTT 59.313 37.500 0.00 0.00 37.81 1.94
520 619 4.239304 GTCAACTTTTGGTGGTTCGTTTT 58.761 39.130 0.00 0.00 37.81 2.43
521 620 3.671164 CGTCAACTTTTGGTGGTTCGTTT 60.671 43.478 0.00 0.00 37.81 3.60
522 621 2.159490 CGTCAACTTTTGGTGGTTCGTT 60.159 45.455 0.00 0.00 37.81 3.85
523 622 1.399089 CGTCAACTTTTGGTGGTTCGT 59.601 47.619 0.00 0.00 37.81 3.85
524 623 1.858399 GCGTCAACTTTTGGTGGTTCG 60.858 52.381 0.00 0.00 37.81 3.95
525 624 1.835121 GCGTCAACTTTTGGTGGTTC 58.165 50.000 0.00 0.00 37.81 3.62
526 625 0.099791 CGCGTCAACTTTTGGTGGTT 59.900 50.000 0.00 0.00 37.81 3.67
530 629 0.317770 CATGCGCGTCAACTTTTGGT 60.318 50.000 8.43 0.00 0.00 3.67
554 654 0.826715 TCACCATCACCTAGCTGCTC 59.173 55.000 4.91 0.00 0.00 4.26
556 656 2.289320 CCTATCACCATCACCTAGCTGC 60.289 54.545 0.00 0.00 0.00 5.25
557 657 2.289320 GCCTATCACCATCACCTAGCTG 60.289 54.545 0.00 0.00 0.00 4.24
561 662 2.329267 CTGGCCTATCACCATCACCTA 58.671 52.381 3.32 0.00 36.36 3.08
564 665 0.536006 GGCTGGCCTATCACCATCAC 60.536 60.000 3.32 0.00 36.36 3.06
572 673 1.874345 GCATGCATGGCTGGCCTATC 61.874 60.000 27.34 3.43 36.94 2.08
573 674 1.906824 GCATGCATGGCTGGCCTAT 60.907 57.895 27.34 2.41 36.94 2.57
575 676 4.770362 TGCATGCATGGCTGGCCT 62.770 61.111 27.34 0.00 36.94 5.19
608 710 2.394563 GCGTTCAGGCTTGGAGCTC 61.395 63.158 4.71 4.71 41.99 4.09
625 727 2.050077 GCTCTTGTTTGCCCGTGC 60.050 61.111 0.00 0.00 38.26 5.34
626 728 2.058829 AACGCTCTTGTTTGCCCGTG 62.059 55.000 0.00 0.00 0.00 4.94
627 729 1.782028 GAACGCTCTTGTTTGCCCGT 61.782 55.000 0.00 0.00 30.75 5.28
628 730 1.082104 GAACGCTCTTGTTTGCCCG 60.082 57.895 0.00 0.00 30.75 6.13
629 731 1.082104 CGAACGCTCTTGTTTGCCC 60.082 57.895 0.00 0.00 30.75 5.36
630 732 0.028902 AACGAACGCTCTTGTTTGCC 59.971 50.000 0.00 0.00 36.83 4.52
631 733 1.112459 CAACGAACGCTCTTGTTTGC 58.888 50.000 0.00 0.00 36.83 3.68
632 734 1.112459 GCAACGAACGCTCTTGTTTG 58.888 50.000 0.00 0.00 38.86 2.93
655 760 0.668706 ATCAGCTGCGTGTCACAGAC 60.669 55.000 9.47 0.00 37.32 3.51
656 761 0.389037 GATCAGCTGCGTGTCACAGA 60.389 55.000 9.47 0.00 37.32 3.41
657 762 0.389556 AGATCAGCTGCGTGTCACAG 60.390 55.000 9.47 0.00 38.22 3.66
659 764 1.080995 GGAGATCAGCTGCGTGTCAC 61.081 60.000 9.47 3.29 0.00 3.67
661 766 0.390340 TTGGAGATCAGCTGCGTGTC 60.390 55.000 9.47 8.13 37.86 3.67
672 779 0.945813 GCAGCTGCAGATTGGAGATC 59.054 55.000 33.36 0.00 38.14 2.75
674 781 0.107800 GAGCAGCTGCAGATTGGAGA 60.108 55.000 38.24 0.00 45.16 3.71
689 796 0.320683 CACGAGATGGGTGTTGAGCA 60.321 55.000 0.00 0.00 0.00 4.26
692 799 0.320683 CTGCACGAGATGGGTGTTGA 60.321 55.000 0.00 0.00 37.70 3.18
695 802 1.293498 GTCTGCACGAGATGGGTGT 59.707 57.895 0.00 0.00 37.70 4.16
712 819 9.843334 CAAAAGCCAAATTAATATTTGCATTGT 57.157 25.926 0.00 0.00 46.01 2.71
713 820 9.843334 ACAAAAGCCAAATTAATATTTGCATTG 57.157 25.926 0.00 14.31 46.01 2.82
714 821 9.843334 CACAAAAGCCAAATTAATATTTGCATT 57.157 25.926 0.00 0.81 46.01 3.56
715 822 7.969508 GCACAAAAGCCAAATTAATATTTGCAT 59.030 29.630 0.00 0.00 46.01 3.96
716 823 7.303998 GCACAAAAGCCAAATTAATATTTGCA 58.696 30.769 0.00 0.00 46.01 4.08
717 824 6.465465 CGCACAAAAGCCAAATTAATATTTGC 59.535 34.615 0.00 0.00 46.01 3.68
718 825 7.478044 CACGCACAAAAGCCAAATTAATATTTG 59.522 33.333 0.00 0.00 46.62 2.32
719 826 7.172361 ACACGCACAAAAGCCAAATTAATATTT 59.828 29.630 0.00 0.00 34.29 1.40
721 828 6.090628 CACACGCACAAAAGCCAAATTAATAT 59.909 34.615 0.00 0.00 0.00 1.28
722 829 5.403766 CACACGCACAAAAGCCAAATTAATA 59.596 36.000 0.00 0.00 0.00 0.98
723 830 4.210955 CACACGCACAAAAGCCAAATTAAT 59.789 37.500 0.00 0.00 0.00 1.40
724 831 3.553511 CACACGCACAAAAGCCAAATTAA 59.446 39.130 0.00 0.00 0.00 1.40
725 832 3.119291 CACACGCACAAAAGCCAAATTA 58.881 40.909 0.00 0.00 0.00 1.40
726 833 1.932511 CACACGCACAAAAGCCAAATT 59.067 42.857 0.00 0.00 0.00 1.82
732 839 0.100503 AAGTCCACACGCACAAAAGC 59.899 50.000 0.00 0.00 0.00 3.51
735 842 1.308783 TGCAAGTCCACACGCACAAA 61.309 50.000 0.00 0.00 0.00 2.83
737 844 2.124942 TGCAAGTCCACACGCACA 60.125 55.556 0.00 0.00 0.00 4.57
738 845 2.327940 GTGCAAGTCCACACGCAC 59.672 61.111 7.50 7.50 46.85 5.34
739 846 1.746991 TTGTGCAAGTCCACACGCA 60.747 52.632 0.00 0.00 44.72 5.24
740 847 1.298339 GTTGTGCAAGTCCACACGC 60.298 57.895 0.00 0.00 44.72 5.34
750 857 2.278726 GCGCTGCTTGTTGTGCAA 60.279 55.556 0.00 0.00 40.13 4.08
752 859 2.428071 GAGCGCTGCTTGTTGTGC 60.428 61.111 18.48 0.00 39.88 4.57
754 861 2.111878 AGGAGCGCTGCTTGTTGT 59.888 55.556 27.14 2.33 39.88 3.32
755 862 2.559840 CAGGAGCGCTGCTTGTTG 59.440 61.111 30.22 15.23 39.88 3.33
756 863 3.360340 GCAGGAGCGCTGCTTGTT 61.360 61.111 30.22 5.48 43.81 2.83
766 873 3.791586 GGGGAGGTGAGCAGGAGC 61.792 72.222 0.00 0.00 42.56 4.70
767 874 1.492133 TTTGGGGAGGTGAGCAGGAG 61.492 60.000 0.00 0.00 0.00 3.69
768 875 1.065410 TTTTGGGGAGGTGAGCAGGA 61.065 55.000 0.00 0.00 0.00 3.86
769 876 0.895559 GTTTTGGGGAGGTGAGCAGG 60.896 60.000 0.00 0.00 0.00 4.85
784 891 1.087202 TGACTCTGTGTGCGCGTTTT 61.087 50.000 8.43 0.00 0.00 2.43
793 900 3.291584 TCTGTCTCTTGTGACTCTGTGT 58.708 45.455 4.78 0.00 37.79 3.72
806 913 3.072944 GTGTACCGTGTACTCTGTCTCT 58.927 50.000 13.14 0.00 0.00 3.10
809 916 2.159734 CGAGTGTACCGTGTACTCTGTC 60.160 54.545 17.61 8.39 38.87 3.51
821 928 0.606604 ATGGTGGTGTCGAGTGTACC 59.393 55.000 0.00 0.00 35.05 3.34
830 937 2.168728 GGTAGAGGAGAATGGTGGTGTC 59.831 54.545 0.00 0.00 0.00 3.67
840 947 1.628846 GCTGGGTTTGGTAGAGGAGAA 59.371 52.381 0.00 0.00 0.00 2.87
860 967 4.892433 TCTTCTTCTTCTTCTTCAGCTGG 58.108 43.478 15.13 0.00 0.00 4.85
871 978 3.369366 GCTGGCTAGCTTCTTCTTCTTCT 60.369 47.826 15.78 0.00 46.57 2.85
872 979 2.935849 GCTGGCTAGCTTCTTCTTCTTC 59.064 50.000 15.78 0.00 46.57 2.87
873 980 2.984562 GCTGGCTAGCTTCTTCTTCTT 58.015 47.619 15.78 0.00 46.57 2.52
891 998 2.693074 GGAGAAGAGAAAGAGATCGGCT 59.307 50.000 0.00 0.00 0.00 5.52
901 1008 1.815003 GTACGACGGGGAGAAGAGAAA 59.185 52.381 0.00 0.00 0.00 2.52
937 1044 4.096003 GCGGGCTAGCTGGGTGAA 62.096 66.667 15.72 0.00 0.00 3.18
978 1089 1.227380 GACCGAGCGATCCAGCAAT 60.227 57.895 0.00 0.00 40.15 3.56
1153 1264 4.947147 GTGGTGGTGCTTGCCGGA 62.947 66.667 5.05 0.00 0.00 5.14
1194 1305 2.774439 CAAGCAGTTGGTTGTGTACC 57.226 50.000 14.19 0.00 45.46 3.34
1225 1375 2.200052 GGAACGGAGGGAGTAGGTG 58.800 63.158 0.00 0.00 0.00 4.00
1239 1389 7.436970 ACAAATCCAAAACAAGTAATTCGGAAC 59.563 33.333 0.00 0.00 0.00 3.62
1240 1390 7.493367 ACAAATCCAAAACAAGTAATTCGGAA 58.507 30.769 0.00 0.00 0.00 4.30
1241 1391 7.013846 AGACAAATCCAAAACAAGTAATTCGGA 59.986 33.333 0.00 0.00 0.00 4.55
1242 1392 7.145323 AGACAAATCCAAAACAAGTAATTCGG 58.855 34.615 0.00 0.00 0.00 4.30
1243 1393 9.329913 CTAGACAAATCCAAAACAAGTAATTCG 57.670 33.333 0.00 0.00 0.00 3.34
1249 1399 8.918202 TGTATCTAGACAAATCCAAAACAAGT 57.082 30.769 0.00 0.00 0.00 3.16
1250 1400 9.219603 TCTGTATCTAGACAAATCCAAAACAAG 57.780 33.333 0.00 0.00 0.00 3.16
1251 1401 9.739276 ATCTGTATCTAGACAAATCCAAAACAA 57.261 29.630 0.00 0.00 0.00 2.83
1252 1402 9.166173 CATCTGTATCTAGACAAATCCAAAACA 57.834 33.333 0.00 0.00 0.00 2.83
1253 1403 9.167311 ACATCTGTATCTAGACAAATCCAAAAC 57.833 33.333 0.00 0.00 0.00 2.43
1305 1455 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
1306 1456 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
1308 1458 9.582431 CTTGTCTTAAATTTGTCTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
1309 1459 9.367444 ACTTGTCTTAAATTTGTCTAGATACGG 57.633 33.333 0.00 0.00 0.00 4.02
1317 1467 9.280174 TCCGAATTACTTGTCTTAAATTTGTCT 57.720 29.630 0.00 0.00 0.00 3.41
1318 1468 9.887406 TTCCGAATTACTTGTCTTAAATTTGTC 57.113 29.630 0.00 0.00 0.00 3.18
1319 1469 9.673454 GTTCCGAATTACTTGTCTTAAATTTGT 57.327 29.630 0.00 0.00 0.00 2.83
1320 1470 8.837059 CGTTCCGAATTACTTGTCTTAAATTTG 58.163 33.333 0.00 0.00 0.00 2.32
1321 1471 8.019094 CCGTTCCGAATTACTTGTCTTAAATTT 58.981 33.333 0.00 0.00 0.00 1.82
1322 1472 7.388500 TCCGTTCCGAATTACTTGTCTTAAATT 59.612 33.333 0.00 0.00 0.00 1.82
1323 1473 6.875195 TCCGTTCCGAATTACTTGTCTTAAAT 59.125 34.615 0.00 0.00 0.00 1.40
1324 1474 6.222389 TCCGTTCCGAATTACTTGTCTTAAA 58.778 36.000 0.00 0.00 0.00 1.52
1325 1475 5.782047 TCCGTTCCGAATTACTTGTCTTAA 58.218 37.500 0.00 0.00 0.00 1.85
1326 1476 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
1327 1477 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
1328 1478 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
1329 1479 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1330 1480 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1331 1481 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1332 1482 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1333 1483 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1334 1484 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1335 1485 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1336 1486 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1337 1487 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
1338 1488 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1339 1489 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
1340 1490 0.172803 CAACTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
1341 1491 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
1342 1492 0.896226 AGCAACTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
1343 1493 1.002087 CAAGCAACTACTCCCTCCGTT 59.998 52.381 0.00 0.00 0.00 4.44
1344 1494 0.608640 CAAGCAACTACTCCCTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
1345 1495 0.741221 GCAAGCAACTACTCCCTCCG 60.741 60.000 0.00 0.00 0.00 4.63
1346 1496 0.615850 AGCAAGCAACTACTCCCTCC 59.384 55.000 0.00 0.00 0.00 4.30
1347 1497 2.079925 CAAGCAAGCAACTACTCCCTC 58.920 52.381 0.00 0.00 0.00 4.30
1348 1498 1.699634 TCAAGCAAGCAACTACTCCCT 59.300 47.619 0.00 0.00 0.00 4.20
1349 1499 2.185004 TCAAGCAAGCAACTACTCCC 57.815 50.000 0.00 0.00 0.00 4.30
1350 1500 3.126000 GTGATCAAGCAAGCAACTACTCC 59.874 47.826 0.00 0.00 0.00 3.85
1351 1501 3.126000 GGTGATCAAGCAAGCAACTACTC 59.874 47.826 0.00 0.00 0.00 2.59
1352 1502 3.077359 GGTGATCAAGCAAGCAACTACT 58.923 45.455 0.00 0.00 0.00 2.57
1353 1503 3.077359 AGGTGATCAAGCAAGCAACTAC 58.923 45.455 0.00 0.00 0.00 2.73
1357 1507 2.039480 AGAGAGGTGATCAAGCAAGCAA 59.961 45.455 0.00 0.00 0.00 3.91
1373 1523 0.457035 GCTGCCTCAGACTCAGAGAG 59.543 60.000 3.79 0.00 35.09 3.20
1379 1529 0.811915 TACGAAGCTGCCTCAGACTC 59.188 55.000 0.00 0.00 32.44 3.36
1380 1530 1.479709 ATACGAAGCTGCCTCAGACT 58.520 50.000 0.00 0.00 32.44 3.24
1381 1531 1.929836 CAATACGAAGCTGCCTCAGAC 59.070 52.381 0.00 0.00 32.44 3.51
1385 1538 1.666189 GGAACAATACGAAGCTGCCTC 59.334 52.381 0.00 0.00 0.00 4.70
1398 1551 3.118112 AGCATCGGATGAAGAGGAACAAT 60.118 43.478 21.69 0.00 0.00 2.71
1405 1558 2.799412 GCAAGTAGCATCGGATGAAGAG 59.201 50.000 21.69 6.68 44.79 2.85
1500 1656 4.502962 AGTCAAGATAGAGAAGCAGCAAC 58.497 43.478 0.00 0.00 0.00 4.17
1502 1658 3.131933 GGAGTCAAGATAGAGAAGCAGCA 59.868 47.826 0.00 0.00 0.00 4.41
1520 1676 4.682021 AAAGAAAAGGATGGGATGGAGT 57.318 40.909 0.00 0.00 0.00 3.85
1527 1684 5.710099 TGTTACAGCTAAAGAAAAGGATGGG 59.290 40.000 0.00 0.00 0.00 4.00
1533 1692 8.496751 GGAGTAAGTGTTACAGCTAAAGAAAAG 58.503 37.037 0.00 0.00 38.60 2.27
1560 1719 6.152379 AGAAAAATCAGCCAAATCGAAGAAC 58.848 36.000 0.00 0.00 43.58 3.01
1737 2040 1.653151 GACATCAAACCCGTCTAGCC 58.347 55.000 0.00 0.00 0.00 3.93
1744 2049 1.200483 CGATCTCGACATCAAACCCG 58.800 55.000 1.51 0.00 43.02 5.28
1745 2050 2.579207 TCGATCTCGACATCAAACCC 57.421 50.000 1.51 0.00 44.22 4.11
1782 2087 3.675225 CCTGCGATCCATATACGAACAAG 59.325 47.826 0.00 0.00 0.00 3.16
1819 2124 3.781770 CTCCAGCGCGTCCAGATCC 62.782 68.421 8.43 0.00 0.00 3.36
1919 2233 3.054139 AGGCCTGAATCAGTTAATGAGCA 60.054 43.478 3.11 0.00 42.53 4.26
1940 2254 4.810790 AGATACACCAAAGAGTTGTCGAG 58.189 43.478 0.00 0.00 32.40 4.04
1945 2259 9.186323 CTCGAATATAGATACACCAAAGAGTTG 57.814 37.037 0.00 0.00 34.25 3.16
1958 2349 9.389755 CAGAGATGGAGAACTCGAATATAGATA 57.610 37.037 0.00 0.00 38.08 1.98
1966 2357 3.421844 TGTCAGAGATGGAGAACTCGAA 58.578 45.455 0.00 0.00 38.08 3.71
1967 2358 3.073274 TGTCAGAGATGGAGAACTCGA 57.927 47.619 0.00 0.00 38.08 4.04
2013 2404 9.922305 CCAACGAATTCTTCAGAACTATAAATC 57.078 33.333 3.52 0.00 36.80 2.17
2017 2408 6.070424 ACCCCAACGAATTCTTCAGAACTATA 60.070 38.462 3.52 0.00 36.80 1.31
2018 2409 5.186198 CCCCAACGAATTCTTCAGAACTAT 58.814 41.667 3.52 0.00 36.80 2.12
2034 2481 6.535508 TGAAATTAAACAAGAAAACCCCAACG 59.464 34.615 0.00 0.00 0.00 4.10
2110 2561 9.631452 AAAAATAACAGAAAGCAGAAGATTAGC 57.369 29.630 0.00 0.00 0.00 3.09
2144 2598 5.049612 GGTGATCACATGATACTGCTTGATG 60.050 44.000 26.47 0.00 34.37 3.07
2149 2603 3.181457 CCTGGTGATCACATGATACTGCT 60.181 47.826 26.47 0.00 34.37 4.24
2251 2714 5.418676 GCTATGTACACAAAATTGGGCAAT 58.581 37.500 0.00 0.00 34.06 3.56
2272 2754 1.040339 TTTCTGGCACCAAAACGGCT 61.040 50.000 0.00 0.00 39.03 5.52
2293 2786 6.296803 ACGAATTGGGGGAATAAAGATCTAC 58.703 40.000 0.00 0.00 0.00 2.59
2338 2831 7.448748 AACAAAGAAACTGTAACAAGTGTCT 57.551 32.000 0.00 0.00 45.05 3.41
2340 2833 6.866248 CCAAACAAAGAAACTGTAACAAGTGT 59.134 34.615 0.00 0.00 0.00 3.55
2360 2853 7.281549 TGGAGAACTAAGTTCAACTAACCAAAC 59.718 37.037 0.00 0.00 44.11 2.93
2372 2865 5.542779 ACAGTGACATGGAGAACTAAGTTC 58.457 41.667 0.00 0.00 42.25 3.01
2373 2866 5.552870 ACAGTGACATGGAGAACTAAGTT 57.447 39.130 0.00 0.00 0.00 2.66
2374 2867 5.070446 TGAACAGTGACATGGAGAACTAAGT 59.930 40.000 0.00 0.00 0.00 2.24
2375 2868 5.541845 TGAACAGTGACATGGAGAACTAAG 58.458 41.667 0.00 0.00 0.00 2.18
2376 2869 5.545063 TGAACAGTGACATGGAGAACTAA 57.455 39.130 0.00 0.00 0.00 2.24
2377 2870 5.545063 TTGAACAGTGACATGGAGAACTA 57.455 39.130 0.00 0.00 0.00 2.24
2378 2871 4.422073 TTGAACAGTGACATGGAGAACT 57.578 40.909 0.00 0.00 0.00 3.01
2379 2872 5.499139 TTTTGAACAGTGACATGGAGAAC 57.501 39.130 0.00 0.00 0.00 3.01
2380 2873 5.163561 GGTTTTTGAACAGTGACATGGAGAA 60.164 40.000 0.00 0.00 0.00 2.87
2381 2874 4.338118 GGTTTTTGAACAGTGACATGGAGA 59.662 41.667 0.00 0.00 0.00 3.71
2409 2902 6.073276 CGACACAATACAAAGATCTGGTGAAA 60.073 38.462 12.46 2.51 0.00 2.69
2432 2928 8.201464 ACTATATACAATGTGACCAAATGACGA 58.799 33.333 0.00 0.00 0.00 4.20
2433 2929 8.365399 ACTATATACAATGTGACCAAATGACG 57.635 34.615 0.00 0.00 0.00 4.35
2477 2990 4.155462 CAGCTCATGAAGTGCAGTTAATGT 59.845 41.667 24.93 8.89 39.15 2.71
2507 3020 1.337071 CATCCTGTTCTCCATGCATGC 59.663 52.381 21.69 11.82 0.00 4.06
2524 3041 7.889589 ATGAAATTTTCGGGAAAAACTCATC 57.110 32.000 18.63 11.15 42.71 2.92
2566 6900 5.186996 TGTCATTGAGAAACCTTTCAAGC 57.813 39.130 0.78 0.00 39.61 4.01
2572 6906 4.586001 ACTGCATTGTCATTGAGAAACCTT 59.414 37.500 0.00 0.00 0.00 3.50
2625 6967 2.408032 GCACAAATGCCAAATACACACG 59.592 45.455 0.00 0.00 46.97 4.49
2646 6988 3.254166 ACTTGCTACACTCTTGCAAATGG 59.746 43.478 0.00 0.00 44.49 3.16
2647 6989 4.214971 AGACTTGCTACACTCTTGCAAATG 59.785 41.667 0.00 1.89 44.49 2.32
2648 6990 4.392940 AGACTTGCTACACTCTTGCAAAT 58.607 39.130 0.00 0.00 44.49 2.32
2649 6991 3.808728 AGACTTGCTACACTCTTGCAAA 58.191 40.909 0.00 0.00 44.49 3.68
2650 6992 3.475566 AGACTTGCTACACTCTTGCAA 57.524 42.857 0.00 0.00 43.25 4.08
2651 6993 4.808414 ATAGACTTGCTACACTCTTGCA 57.192 40.909 0.00 0.00 34.69 4.08
2652 6994 7.778470 ATAAATAGACTTGCTACACTCTTGC 57.222 36.000 0.00 0.00 0.00 4.01
2684 7032 2.489329 CACCGAATGACAAAAGCCAGAT 59.511 45.455 0.00 0.00 0.00 2.90
2722 7079 0.514691 GCAACAAGCTTCGGAGTCAG 59.485 55.000 0.00 0.00 41.15 3.51
2723 7080 0.179059 TGCAACAAGCTTCGGAGTCA 60.179 50.000 0.00 0.00 45.94 3.41
2724 7081 1.160137 ATGCAACAAGCTTCGGAGTC 58.840 50.000 0.00 0.00 45.94 3.36
2725 7082 1.537202 GAATGCAACAAGCTTCGGAGT 59.463 47.619 0.00 0.00 45.94 3.85
2726 7083 1.464687 CGAATGCAACAAGCTTCGGAG 60.465 52.381 9.45 0.00 43.58 4.63
2728 7085 3.005823 CGAATGCAACAAGCTTCGG 57.994 52.632 9.45 0.00 43.58 4.30
2731 7088 2.878406 AGTACACGAATGCAACAAGCTT 59.122 40.909 0.00 0.00 45.94 3.74
2764 7138 6.759827 GCACATATGGATTTCAAGAGCAAAAT 59.240 34.615 7.80 0.00 0.00 1.82
2812 7195 3.187432 GCTCCTGCTTCAGTTTCTTGTAC 59.813 47.826 0.00 0.00 36.03 2.90
3167 7955 9.013490 CACACAGAGATTTTTCTTTTGTTGTAG 57.987 33.333 0.00 0.00 0.00 2.74
3185 7976 4.371786 ACACACATGTAACTCACACAGAG 58.628 43.478 0.00 0.00 43.36 3.35
3186 7977 4.400529 ACACACATGTAACTCACACAGA 57.599 40.909 0.00 0.00 40.86 3.41
3187 7978 5.484173 AAACACACATGTAACTCACACAG 57.516 39.130 0.00 0.00 40.86 3.66
3188 7979 4.033472 CGAAACACACATGTAACTCACACA 59.967 41.667 0.00 0.00 40.86 3.72
3189 7980 4.269123 TCGAAACACACATGTAACTCACAC 59.731 41.667 0.00 0.00 40.86 3.82
3190 7981 4.434520 TCGAAACACACATGTAACTCACA 58.565 39.130 0.00 0.00 38.45 3.58
3191 7982 4.506654 ACTCGAAACACACATGTAACTCAC 59.493 41.667 0.00 0.00 38.45 3.51
3192 7983 4.689071 ACTCGAAACACACATGTAACTCA 58.311 39.130 0.00 0.00 38.45 3.41
3193 7984 5.652744 AACTCGAAACACACATGTAACTC 57.347 39.130 0.00 0.00 38.45 3.01
3194 7985 6.255215 CAAAACTCGAAACACACATGTAACT 58.745 36.000 0.00 0.00 38.45 2.24
3195 7986 5.454232 CCAAAACTCGAAACACACATGTAAC 59.546 40.000 0.00 0.00 38.45 2.50
3196 7987 5.124138 ACCAAAACTCGAAACACACATGTAA 59.876 36.000 0.00 0.00 38.45 2.41
3197 7988 4.636648 ACCAAAACTCGAAACACACATGTA 59.363 37.500 0.00 0.00 38.45 2.29
3198 7989 3.442273 ACCAAAACTCGAAACACACATGT 59.558 39.130 0.00 0.00 42.46 3.21
3199 7990 4.027572 ACCAAAACTCGAAACACACATG 57.972 40.909 0.00 0.00 0.00 3.21
3200 7991 4.712122 AACCAAAACTCGAAACACACAT 57.288 36.364 0.00 0.00 0.00 3.21
3290 8098 8.450180 ACATTCAAAAACCAAATTTCAGTGTTC 58.550 29.630 0.00 0.00 0.00 3.18
3295 8103 7.066766 TCCCAACATTCAAAAACCAAATTTCAG 59.933 33.333 0.00 0.00 0.00 3.02
3357 8174 2.703416 TGCTAATCTGTGCCTGTCTTG 58.297 47.619 0.00 0.00 0.00 3.02
3369 8186 9.553064 CTGACTACTCCATAAAATTGCTAATCT 57.447 33.333 0.00 0.00 0.00 2.40
3405 8226 0.098200 CACGACCAAGAGCATGCATG 59.902 55.000 22.70 22.70 0.00 4.06
3406 8227 1.028330 CCACGACCAAGAGCATGCAT 61.028 55.000 21.98 4.82 0.00 3.96
3419 8240 3.170585 GTGCGACGCTACCACGAC 61.171 66.667 22.08 4.85 36.70 4.34
3468 8289 0.325272 AACGAAGGAAGGGGAAGAGC 59.675 55.000 0.00 0.00 0.00 4.09
3480 8301 1.008995 CGCACCAACCAAACGAAGG 60.009 57.895 0.00 0.00 0.00 3.46
3540 8361 3.358707 ACGAGTTGTAATGTGTCGACA 57.641 42.857 15.76 15.76 36.22 4.35
3562 8383 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
3600 8442 4.529897 AGACAGATAGCATGGAAATTGCA 58.470 39.130 0.00 0.00 42.62 4.08
3601 8443 5.180868 CCTAGACAGATAGCATGGAAATTGC 59.819 44.000 0.00 0.00 40.45 3.56
3602 8444 6.294473 ACCTAGACAGATAGCATGGAAATTG 58.706 40.000 0.00 0.00 0.00 2.32
3603 8445 6.328672 AGACCTAGACAGATAGCATGGAAATT 59.671 38.462 0.00 0.00 0.00 1.82
3604 8446 5.843421 AGACCTAGACAGATAGCATGGAAAT 59.157 40.000 0.00 0.00 0.00 2.17
3605 8447 5.211973 AGACCTAGACAGATAGCATGGAAA 58.788 41.667 0.00 0.00 0.00 3.13
3606 8448 4.809193 AGACCTAGACAGATAGCATGGAA 58.191 43.478 0.00 0.00 0.00 3.53
3607 8449 4.461450 AGACCTAGACAGATAGCATGGA 57.539 45.455 0.00 0.00 0.00 3.41
3608 8450 6.039270 GCTATAGACCTAGACAGATAGCATGG 59.961 46.154 3.21 0.00 40.82 3.66
3609 8451 6.828273 AGCTATAGACCTAGACAGATAGCATG 59.172 42.308 19.79 0.00 42.64 4.06
3610 8452 6.969043 AGCTATAGACCTAGACAGATAGCAT 58.031 40.000 19.79 9.21 42.64 3.79
3611 8453 6.381498 AGCTATAGACCTAGACAGATAGCA 57.619 41.667 19.79 0.00 42.64 3.49
3612 8454 6.404293 GCAAGCTATAGACCTAGACAGATAGC 60.404 46.154 3.21 14.12 41.23 2.97
3613 8455 6.657117 TGCAAGCTATAGACCTAGACAGATAG 59.343 42.308 3.21 0.00 0.00 2.08
3614 8456 6.431543 GTGCAAGCTATAGACCTAGACAGATA 59.568 42.308 3.21 0.00 0.00 1.98
3615 8457 5.242838 GTGCAAGCTATAGACCTAGACAGAT 59.757 44.000 3.21 0.00 0.00 2.90
3616 8458 4.580995 GTGCAAGCTATAGACCTAGACAGA 59.419 45.833 3.21 0.00 0.00 3.41
3617 8459 4.339530 TGTGCAAGCTATAGACCTAGACAG 59.660 45.833 3.21 0.00 0.00 3.51
3618 8460 4.278310 TGTGCAAGCTATAGACCTAGACA 58.722 43.478 3.21 0.00 0.00 3.41
3667 8511 1.083401 CAAGCACAAGACGACACGC 60.083 57.895 0.00 0.00 0.00 5.34
3674 8518 3.300590 CACGAAAAACACAAGCACAAGAC 59.699 43.478 0.00 0.00 0.00 3.01
3676 8520 3.497118 TCACGAAAAACACAAGCACAAG 58.503 40.909 0.00 0.00 0.00 3.16
3682 8526 4.025647 GTCCTCTCTCACGAAAAACACAAG 60.026 45.833 0.00 0.00 0.00 3.16
3709 8553 2.159366 AGAGCTCAACAAGACGATACCG 60.159 50.000 17.77 0.00 42.50 4.02
3710 8554 3.512033 AGAGCTCAACAAGACGATACC 57.488 47.619 17.77 0.00 0.00 2.73
3713 8557 2.159170 GGCTAGAGCTCAACAAGACGAT 60.159 50.000 17.77 0.00 41.70 3.73
3796 8640 1.464608 CATCTTATGGTAATGCCGGCG 59.535 52.381 23.90 0.00 41.21 6.46
3804 8648 4.136796 GGTGCATGCTCATCTTATGGTAA 58.863 43.478 20.33 0.00 0.00 2.85
3816 8660 2.360852 AGCTGGTGGTGCATGCTC 60.361 61.111 20.33 15.68 0.00 4.26
3817 8661 2.360852 GAGCTGGTGGTGCATGCT 60.361 61.111 20.33 0.00 36.63 3.79
3819 8663 2.034532 TGGAGCTGGTGGTGCATG 59.965 61.111 0.00 0.00 37.12 4.06
3822 8666 0.610232 AGAAATGGAGCTGGTGGTGC 60.610 55.000 0.00 0.00 0.00 5.01
3840 8684 2.636830 CTCCTTTGATGGCTACCACAG 58.363 52.381 0.00 0.00 35.80 3.66
3870 8714 1.336240 GCAACTGTTTGACATGCCTCC 60.336 52.381 0.00 0.00 34.24 4.30
4031 8889 2.635915 ACCAGATACTCCGTTGGTTCAA 59.364 45.455 0.00 0.00 40.94 2.69
4034 8892 3.438183 ACTACCAGATACTCCGTTGGTT 58.562 45.455 0.00 0.00 40.94 3.67
4036 8894 4.205587 AGTACTACCAGATACTCCGTTGG 58.794 47.826 0.00 0.00 36.76 3.77
4037 8895 5.050499 CGTAGTACTACCAGATACTCCGTTG 60.050 48.000 24.06 4.34 33.65 4.10
4038 8896 5.053145 CGTAGTACTACCAGATACTCCGTT 58.947 45.833 24.06 0.00 33.65 4.44
4039 8897 4.100189 ACGTAGTACTACCAGATACTCCGT 59.900 45.833 24.06 13.21 41.94 4.69
4040 8898 4.626042 ACGTAGTACTACCAGATACTCCG 58.374 47.826 24.06 12.63 41.94 4.63
4042 8900 7.116233 GCTTCTACGTAGTACTACCAGATACTC 59.884 44.444 24.06 12.75 45.11 2.59
4043 8901 6.928492 GCTTCTACGTAGTACTACCAGATACT 59.072 42.308 24.06 4.14 45.11 2.12
4069 8954 1.443872 GTACAGACCGGCTCACACG 60.444 63.158 0.00 0.00 0.00 4.49
4077 8962 2.048444 TGGCTAGTAGTACAGACCGG 57.952 55.000 0.00 0.00 0.00 5.28
4083 8968 4.215908 CTCCCTTGATGGCTAGTAGTACA 58.784 47.826 2.52 0.00 0.00 2.90
4086 8971 2.683768 CCTCCCTTGATGGCTAGTAGT 58.316 52.381 0.00 0.00 0.00 2.73
4087 8972 1.346068 GCCTCCCTTGATGGCTAGTAG 59.654 57.143 0.00 0.00 43.05 2.57
4088 8973 1.343985 TGCCTCCCTTGATGGCTAGTA 60.344 52.381 0.00 0.00 46.23 1.82
4089 8974 0.621571 TGCCTCCCTTGATGGCTAGT 60.622 55.000 0.00 0.00 46.23 2.57
4090 8975 0.548031 TTGCCTCCCTTGATGGCTAG 59.452 55.000 0.00 0.00 46.23 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.