Multiple sequence alignment - TraesCS6B01G159300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G159300 chr6B 100.000 3960 0 0 1 3960 162269046 162273005 0.000000e+00 7313.0
1 TraesCS6B01G159300 chr6B 89.451 237 23 2 1 236 162183356 162183591 8.320000e-77 298.0
2 TraesCS6B01G159300 chr6D 92.216 1503 72 19 543 2038 85810572 85812036 0.000000e+00 2085.0
3 TraesCS6B01G159300 chr6D 87.443 1091 58 39 2438 3484 85812042 85813097 0.000000e+00 1182.0
4 TraesCS6B01G159300 chr6D 93.333 255 15 2 1 255 85810275 85810527 3.740000e-100 375.0
5 TraesCS6B01G159300 chr6D 88.768 276 20 7 3647 3913 85814472 85814745 1.060000e-85 327.0
6 TraesCS6B01G159300 chr6D 90.638 235 20 2 1 234 85809016 85809249 1.070000e-80 311.0
7 TraesCS6B01G159300 chr6A 92.154 1249 56 21 809 2042 103250518 103251739 0.000000e+00 1725.0
8 TraesCS6B01G159300 chr6A 84.272 1119 70 50 2455 3517 103251747 103252815 0.000000e+00 994.0
9 TraesCS6B01G159300 chr6A 90.336 238 20 3 1 236 103247543 103247779 3.840000e-80 309.0
10 TraesCS6B01G159300 chr6A 90.987 233 15 2 1 227 103248806 103249038 3.840000e-80 309.0
11 TraesCS6B01G159300 chr6A 91.441 222 15 3 544 763 103250189 103250408 6.430000e-78 302.0
12 TraesCS6B01G159300 chr6A 91.979 187 15 0 3713 3899 103261509 103261695 3.030000e-66 263.0
13 TraesCS6B01G159300 chr3B 87.187 1077 91 24 1055 2101 83207144 83208203 0.000000e+00 1181.0
14 TraesCS6B01G159300 chr3B 83.709 577 58 18 2341 2892 722586587 722587152 2.730000e-141 512.0
15 TraesCS6B01G159300 chr3B 95.019 261 13 0 253 513 677855765 677856025 1.020000e-110 411.0
16 TraesCS6B01G159300 chr3B 93.130 262 18 0 252 513 543888335 543888596 6.210000e-103 385.0
17 TraesCS6B01G159300 chr4B 86.197 1007 96 27 1055 2056 472088582 472087614 0.000000e+00 1050.0
18 TraesCS6B01G159300 chr5A 85.799 1007 94 29 1055 2056 437245152 437244190 0.000000e+00 1022.0
19 TraesCS6B01G159300 chr5A 79.624 692 73 37 2293 2976 437241210 437240579 6.080000e-118 435.0
20 TraesCS6B01G159300 chr2D 86.779 832 53 22 2336 3148 646423289 646424082 0.000000e+00 874.0
21 TraesCS6B01G159300 chr2D 90.842 546 33 8 1732 2272 646422689 646423222 0.000000e+00 715.0
22 TraesCS6B01G159300 chr2A 90.217 552 35 8 1732 2275 105548336 105547796 0.000000e+00 702.0
23 TraesCS6B01G159300 chr1A 87.270 597 49 9 1058 1653 110058755 110059325 0.000000e+00 656.0
24 TraesCS6B01G159300 chr1A 78.696 690 79 44 2290 2971 110062744 110063373 7.970000e-107 398.0
25 TraesCS6B01G159300 chr1A 85.015 327 27 13 1787 2101 110059880 110060196 2.970000e-81 313.0
26 TraesCS6B01G159300 chr7D 85.520 587 58 22 2337 2904 406315286 406315864 4.410000e-164 588.0
27 TraesCS6B01G159300 chr7D 94.697 264 14 0 253 516 456373106 456373369 1.020000e-110 411.0
28 TraesCS6B01G159300 chr7D 92.419 277 17 3 253 528 600893514 600893787 3.710000e-105 392.0
29 TraesCS6B01G159300 chr7D 93.130 262 18 0 252 513 106417934 106417673 6.210000e-103 385.0
30 TraesCS6B01G159300 chr5D 84.298 605 47 9 2014 2615 540034030 540034589 7.480000e-152 547.0
31 TraesCS6B01G159300 chr5D 90.385 104 6 3 1732 1833 540033842 540033943 2.480000e-27 134.0
32 TraesCS6B01G159300 chr1B 83.729 590 62 23 2337 2904 409833978 409834555 9.750000e-146 527.0
33 TraesCS6B01G159300 chr1B 95.951 247 10 0 252 498 60389872 60389626 6.160000e-108 401.0
34 TraesCS6B01G159300 chr1B 94.275 262 14 1 253 513 349756620 349756359 2.220000e-107 399.0
35 TraesCS6B01G159300 chr3A 83.448 580 57 18 2337 2892 358903372 358902808 1.640000e-138 503.0
36 TraesCS6B01G159300 chr3A 89.796 49 2 1 714 762 83981246 83981201 4.270000e-05 60.2
37 TraesCS6B01G159300 chr2B 86.557 424 41 5 1245 1665 28169760 28170170 1.680000e-123 453.0
38 TraesCS6B01G159300 chr4D 94.253 261 15 0 253 513 296755049 296754789 2.220000e-107 399.0
39 TraesCS6B01G159300 chr4D 93.462 260 17 0 253 512 419245636 419245895 1.730000e-103 387.0
40 TraesCS6B01G159300 chr7A 89.796 294 22 2 1865 2155 653007229 653006941 1.740000e-98 370.0
41 TraesCS6B01G159300 chr7A 91.228 114 9 1 2435 2548 653006950 653006838 1.910000e-33 154.0
42 TraesCS6B01G159300 chr7A 87.850 107 9 3 1732 1836 653007329 653007225 5.370000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G159300 chr6B 162269046 162273005 3959 False 7313.000000 7313 100.000000 1 3960 1 chr6B.!!$F2 3959
1 TraesCS6B01G159300 chr6D 85809016 85814745 5729 False 856.000000 2085 90.479600 1 3913 5 chr6D.!!$F1 3912
2 TraesCS6B01G159300 chr6A 103247543 103252815 5272 False 727.800000 1725 89.838000 1 3517 5 chr6A.!!$F2 3516
3 TraesCS6B01G159300 chr3B 83207144 83208203 1059 False 1181.000000 1181 87.187000 1055 2101 1 chr3B.!!$F1 1046
4 TraesCS6B01G159300 chr3B 722586587 722587152 565 False 512.000000 512 83.709000 2341 2892 1 chr3B.!!$F4 551
5 TraesCS6B01G159300 chr4B 472087614 472088582 968 True 1050.000000 1050 86.197000 1055 2056 1 chr4B.!!$R1 1001
6 TraesCS6B01G159300 chr5A 437240579 437245152 4573 True 728.500000 1022 82.711500 1055 2976 2 chr5A.!!$R1 1921
7 TraesCS6B01G159300 chr2D 646422689 646424082 1393 False 794.500000 874 88.810500 1732 3148 2 chr2D.!!$F1 1416
8 TraesCS6B01G159300 chr2A 105547796 105548336 540 True 702.000000 702 90.217000 1732 2275 1 chr2A.!!$R1 543
9 TraesCS6B01G159300 chr1A 110058755 110063373 4618 False 455.666667 656 83.660333 1058 2971 3 chr1A.!!$F1 1913
10 TraesCS6B01G159300 chr7D 406315286 406315864 578 False 588.000000 588 85.520000 2337 2904 1 chr7D.!!$F1 567
11 TraesCS6B01G159300 chr5D 540033842 540034589 747 False 340.500000 547 87.341500 1732 2615 2 chr5D.!!$F1 883
12 TraesCS6B01G159300 chr1B 409833978 409834555 577 False 527.000000 527 83.729000 2337 2904 1 chr1B.!!$F1 567
13 TraesCS6B01G159300 chr3A 358902808 358903372 564 True 503.000000 503 83.448000 2337 2892 1 chr3A.!!$R2 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 3347 0.392060 AACGGACCGATTAACCTGCC 60.392 55.0 23.38 0.0 0.0 4.85 F
1783 4636 0.930742 CGCTACGTTCTCCATCTCGC 60.931 60.0 0.00 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2119 5014 0.311790 TACACCACACGAAGGACGAC 59.688 55.0 0.0 0.0 45.77 4.34 R
3523 12198 0.108424 GGCAACAGAGCAGACGAGAT 60.108 55.0 0.0 0.0 35.83 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 1433 7.645058 AACCGAATACATCTCAATGGAATTT 57.355 32.000 0.00 0.00 37.19 1.82
170 1443 3.290710 ACATCTCAATGGAATTTCCCCG 58.709 45.455 12.90 1.69 37.19 5.73
189 1462 4.141711 CCCCGTGAATCCTCATTCTTCTAA 60.142 45.833 0.00 0.00 39.49 2.10
190 1464 4.811557 CCCGTGAATCCTCATTCTTCTAAC 59.188 45.833 0.00 0.00 39.49 2.34
251 2602 3.679502 GTCAATTGATTTCTTTTGCGGGG 59.320 43.478 12.12 0.00 0.00 5.73
255 2606 3.149005 TGATTTCTTTTGCGGGGTACT 57.851 42.857 0.00 0.00 0.00 2.73
256 2607 3.078837 TGATTTCTTTTGCGGGGTACTC 58.921 45.455 0.00 0.00 0.00 2.59
257 2608 1.900245 TTTCTTTTGCGGGGTACTCC 58.100 50.000 0.00 0.00 0.00 3.85
267 2618 4.447734 GGTACTCCCTCCGTTCCA 57.552 61.111 0.00 0.00 0.00 3.53
271 2622 2.970640 GGTACTCCCTCCGTTCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
273 2624 4.776308 GGTACTCCCTCCGTTCCATAATAT 59.224 45.833 0.00 0.00 0.00 1.28
275 2626 6.096564 GGTACTCCCTCCGTTCCATAATATAG 59.903 46.154 0.00 0.00 0.00 1.31
276 2627 5.652324 ACTCCCTCCGTTCCATAATATAGT 58.348 41.667 0.00 0.00 0.00 2.12
277 2628 5.480772 ACTCCCTCCGTTCCATAATATAGTG 59.519 44.000 0.00 0.00 0.00 2.74
280 2631 4.223032 CCTCCGTTCCATAATATAGTGCCT 59.777 45.833 0.00 0.00 0.00 4.75
281 2632 5.421056 CCTCCGTTCCATAATATAGTGCCTA 59.579 44.000 0.00 0.00 0.00 3.93
282 2633 6.098409 CCTCCGTTCCATAATATAGTGCCTAT 59.902 42.308 1.18 1.18 0.00 2.57
283 2634 7.287005 CCTCCGTTCCATAATATAGTGCCTATA 59.713 40.741 4.91 4.91 34.07 1.31
299 2650 8.056407 AGTGCCTATAGATTTTTGGAAAAGTC 57.944 34.615 0.00 0.38 35.58 3.01
300 2651 7.669722 AGTGCCTATAGATTTTTGGAAAAGTCA 59.330 33.333 0.00 0.00 37.17 3.41
301 2652 8.303876 GTGCCTATAGATTTTTGGAAAAGTCAA 58.696 33.333 0.00 0.00 37.17 3.18
302 2653 8.865090 TGCCTATAGATTTTTGGAAAAGTCAAA 58.135 29.630 0.00 0.00 37.17 2.69
303 2654 9.140286 GCCTATAGATTTTTGGAAAAGTCAAAC 57.860 33.333 0.00 0.00 37.17 2.93
304 2655 9.639601 CCTATAGATTTTTGGAAAAGTCAAACC 57.360 33.333 0.00 0.00 37.17 3.27
308 2659 8.942338 AGATTTTTGGAAAAGTCAAACCTTAC 57.058 30.769 9.28 0.00 37.17 2.34
309 2660 8.536175 AGATTTTTGGAAAAGTCAAACCTTACA 58.464 29.630 9.28 0.00 37.17 2.41
310 2661 9.157104 GATTTTTGGAAAAGTCAAACCTTACAA 57.843 29.630 3.27 0.00 35.47 2.41
311 2662 8.904099 TTTTTGGAAAAGTCAAACCTTACAAA 57.096 26.923 0.00 0.00 34.34 2.83
312 2663 7.892778 TTTGGAAAAGTCAAACCTTACAAAC 57.107 32.000 0.00 0.00 0.00 2.93
313 2664 6.844097 TGGAAAAGTCAAACCTTACAAACT 57.156 33.333 0.00 0.00 0.00 2.66
314 2665 7.234661 TGGAAAAGTCAAACCTTACAAACTT 57.765 32.000 0.00 0.00 0.00 2.66
315 2666 7.672240 TGGAAAAGTCAAACCTTACAAACTTT 58.328 30.769 0.00 0.00 38.27 2.66
316 2667 7.600752 TGGAAAAGTCAAACCTTACAAACTTTG 59.399 33.333 0.00 0.00 37.12 2.77
317 2668 7.815549 GGAAAAGTCAAACCTTACAAACTTTGA 59.184 33.333 8.55 0.00 37.12 2.69
318 2669 8.528917 AAAAGTCAAACCTTACAAACTTTGAC 57.471 30.769 8.55 12.19 46.84 3.18
320 2671 5.956642 GTCAAACCTTACAAACTTTGACCA 58.043 37.500 8.55 0.00 43.35 4.02
321 2672 6.391537 GTCAAACCTTACAAACTTTGACCAA 58.608 36.000 8.55 0.00 43.35 3.67
322 2673 6.530181 GTCAAACCTTACAAACTTTGACCAAG 59.470 38.462 8.55 7.98 43.35 3.61
332 2683 3.963129 ACTTTGACCAAGTTTGTGGAGA 58.037 40.909 0.00 0.00 43.89 3.71
333 2684 4.340617 ACTTTGACCAAGTTTGTGGAGAA 58.659 39.130 0.00 0.00 43.89 2.87
334 2685 4.770010 ACTTTGACCAAGTTTGTGGAGAAA 59.230 37.500 0.00 0.00 43.89 2.52
335 2686 5.245075 ACTTTGACCAAGTTTGTGGAGAAAA 59.755 36.000 0.00 0.00 43.89 2.29
336 2687 5.730296 TTGACCAAGTTTGTGGAGAAAAA 57.270 34.783 0.00 0.00 41.65 1.94
337 2688 5.066968 TGACCAAGTTTGTGGAGAAAAAC 57.933 39.130 0.00 0.00 41.65 2.43
338 2689 4.524714 TGACCAAGTTTGTGGAGAAAAACA 59.475 37.500 0.00 0.00 41.65 2.83
339 2690 5.186797 TGACCAAGTTTGTGGAGAAAAACAT 59.813 36.000 0.00 0.00 41.65 2.71
340 2691 6.048732 ACCAAGTTTGTGGAGAAAAACATT 57.951 33.333 0.00 0.00 41.65 2.71
341 2692 6.472016 ACCAAGTTTGTGGAGAAAAACATTT 58.528 32.000 0.00 0.00 41.65 2.32
342 2693 7.616313 ACCAAGTTTGTGGAGAAAAACATTTA 58.384 30.769 0.00 0.00 41.65 1.40
343 2694 7.547722 ACCAAGTTTGTGGAGAAAAACATTTAC 59.452 33.333 0.00 0.00 41.65 2.01
344 2695 7.547370 CCAAGTTTGTGGAGAAAAACATTTACA 59.453 33.333 0.00 0.00 41.65 2.41
345 2696 9.097257 CAAGTTTGTGGAGAAAAACATTTACAT 57.903 29.630 0.00 0.00 38.48 2.29
346 2697 9.665719 AAGTTTGTGGAGAAAAACATTTACATT 57.334 25.926 0.00 0.00 38.48 2.71
347 2698 9.665719 AGTTTGTGGAGAAAAACATTTACATTT 57.334 25.926 0.00 0.00 38.48 2.32
504 2855 7.915293 TTATAGGCATTACATTATGGAACGG 57.085 36.000 0.00 0.00 0.00 4.44
505 2856 4.431416 AGGCATTACATTATGGAACGGA 57.569 40.909 0.00 0.00 0.00 4.69
506 2857 4.389374 AGGCATTACATTATGGAACGGAG 58.611 43.478 0.00 0.00 0.00 4.63
507 2858 3.502211 GGCATTACATTATGGAACGGAGG 59.498 47.826 0.00 0.00 0.00 4.30
508 2859 3.502211 GCATTACATTATGGAACGGAGGG 59.498 47.826 0.00 0.00 0.00 4.30
509 2860 4.745478 GCATTACATTATGGAACGGAGGGA 60.745 45.833 0.00 0.00 0.00 4.20
510 2861 4.682778 TTACATTATGGAACGGAGGGAG 57.317 45.455 0.00 0.00 0.00 4.30
511 2862 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
512 2863 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
513 2864 4.035112 ACATTATGGAACGGAGGGAGTAA 58.965 43.478 0.00 0.00 0.00 2.24
514 2865 4.101119 ACATTATGGAACGGAGGGAGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
515 2866 2.249309 ATGGAACGGAGGGAGTAAGT 57.751 50.000 0.00 0.00 0.00 2.24
516 2867 1.553706 TGGAACGGAGGGAGTAAGTC 58.446 55.000 0.00 0.00 0.00 3.01
517 2868 1.203087 TGGAACGGAGGGAGTAAGTCA 60.203 52.381 0.00 0.00 0.00 3.41
518 2869 1.897802 GGAACGGAGGGAGTAAGTCAA 59.102 52.381 0.00 0.00 0.00 3.18
519 2870 2.500504 GGAACGGAGGGAGTAAGTCAAT 59.499 50.000 0.00 0.00 0.00 2.57
520 2871 3.703052 GGAACGGAGGGAGTAAGTCAATA 59.297 47.826 0.00 0.00 0.00 1.90
521 2872 4.202131 GGAACGGAGGGAGTAAGTCAATAG 60.202 50.000 0.00 0.00 0.00 1.73
522 2873 4.246712 ACGGAGGGAGTAAGTCAATAGA 57.753 45.455 0.00 0.00 0.00 1.98
523 2874 4.805744 ACGGAGGGAGTAAGTCAATAGAT 58.194 43.478 0.00 0.00 0.00 1.98
524 2875 5.950023 ACGGAGGGAGTAAGTCAATAGATA 58.050 41.667 0.00 0.00 0.00 1.98
525 2876 6.371278 ACGGAGGGAGTAAGTCAATAGATAA 58.629 40.000 0.00 0.00 0.00 1.75
526 2877 6.837568 ACGGAGGGAGTAAGTCAATAGATAAA 59.162 38.462 0.00 0.00 0.00 1.40
527 2878 7.509659 ACGGAGGGAGTAAGTCAATAGATAAAT 59.490 37.037 0.00 0.00 0.00 1.40
528 2879 7.815068 CGGAGGGAGTAAGTCAATAGATAAATG 59.185 40.741 0.00 0.00 0.00 2.32
529 2880 8.871125 GGAGGGAGTAAGTCAATAGATAAATGA 58.129 37.037 0.00 0.00 0.00 2.57
597 2948 5.353111 TGAGATGAGTAAACAAACACGTCA 58.647 37.500 0.00 0.00 30.94 4.35
704 3055 9.535170 TTCAATATTAAAAATGGAGGTGGTACA 57.465 29.630 0.00 0.00 0.00 2.90
872 3290 1.154188 GAGTGTGACGGAGAGACGC 60.154 63.158 0.00 0.00 37.37 5.19
873 3291 1.579084 GAGTGTGACGGAGAGACGCT 61.579 60.000 0.00 0.00 36.18 5.07
874 3292 1.442857 GTGTGACGGAGAGACGCTG 60.443 63.158 0.00 0.00 37.37 5.18
875 3293 2.505118 GTGACGGAGAGACGCTGC 60.505 66.667 0.00 0.00 37.37 5.25
876 3294 2.983592 TGACGGAGAGACGCTGCA 60.984 61.111 0.00 0.00 37.37 4.41
877 3295 2.202544 GACGGAGAGACGCTGCAG 60.203 66.667 10.11 10.11 37.37 4.41
878 3296 3.691744 GACGGAGAGACGCTGCAGG 62.692 68.421 17.12 8.27 37.37 4.85
879 3297 3.443925 CGGAGAGACGCTGCAGGA 61.444 66.667 17.12 0.00 34.07 3.86
929 3347 0.392060 AACGGACCGATTAACCTGCC 60.392 55.000 23.38 0.00 0.00 4.85
997 3415 1.002134 ACACACTGGCTGCATACCC 60.002 57.895 0.50 0.00 0.00 3.69
1045 3464 1.737793 CAATTCCCACAACGCTCCTAC 59.262 52.381 0.00 0.00 0.00 3.18
1052 3471 2.480419 CCACAACGCTCCTACAAAGAAG 59.520 50.000 0.00 0.00 0.00 2.85
1063 3482 1.160137 ACAAAGAAGCCAGATCGTGC 58.840 50.000 1.70 1.70 0.00 5.34
1783 4636 0.930742 CGCTACGTTCTCCATCTCGC 60.931 60.000 0.00 0.00 0.00 5.03
2033 4919 2.417787 GGGTGATTTCTTGCCTGCATTC 60.418 50.000 0.00 0.00 0.00 2.67
2117 5012 4.310769 TCCTCTTCTTTTTCTCTTCTGCG 58.689 43.478 0.00 0.00 0.00 5.18
2119 5014 2.476619 TCTTCTTTTTCTCTTCTGCGCG 59.523 45.455 0.00 0.00 0.00 6.86
2140 5038 1.614903 TCGTCCTTCGTGTGGTGTAAT 59.385 47.619 0.00 0.00 40.80 1.89
2153 5051 5.065218 GTGTGGTGTAATAGAGGCAAATGAG 59.935 44.000 0.00 0.00 0.00 2.90
2156 5054 4.513318 GGTGTAATAGAGGCAAATGAGAGC 59.487 45.833 0.00 0.00 0.00 4.09
2180 5078 7.446319 AGCCAGAAAAATAAGTACCGTAGTTTT 59.554 33.333 10.44 10.44 0.00 2.43
2181 5079 8.077991 GCCAGAAAAATAAGTACCGTAGTTTTT 58.922 33.333 11.43 8.32 0.00 1.94
2192 5090 7.275183 AGTACCGTAGTTTTTCAAAGTACCTT 58.725 34.615 8.11 0.00 0.00 3.50
2201 5099 9.772973 AGTTTTTCAAAGTACCTTTTCTTTTGT 57.227 25.926 0.00 0.00 30.60 2.83
2222 5126 0.871057 GAGACACAGTTTGGCAGAGC 59.129 55.000 0.00 0.00 34.40 4.09
2230 5134 1.666553 TTTGGCAGAGCACGTACCG 60.667 57.895 0.00 0.00 0.00 4.02
2231 5135 2.089887 TTTGGCAGAGCACGTACCGA 62.090 55.000 0.00 0.00 0.00 4.69
2232 5136 1.884075 TTGGCAGAGCACGTACCGAT 61.884 55.000 0.00 0.00 0.00 4.18
2233 5137 1.589196 GGCAGAGCACGTACCGATC 60.589 63.158 0.00 0.00 0.00 3.69
2357 10355 3.513515 AGAGGACAAACAACCAAAGCAAA 59.486 39.130 0.00 0.00 0.00 3.68
2377 10376 1.541379 ACAGGGAAATAAACGGCCAC 58.459 50.000 2.24 0.00 0.00 5.01
2408 10411 6.308766 GCATGCATAACTTTAGTTTGGTCTTG 59.691 38.462 14.21 0.06 39.31 3.02
2413 10416 7.094762 GCATAACTTTAGTTTGGTCTTGTAGCT 60.095 37.037 0.00 0.00 39.31 3.32
2425 10428 4.938226 GGTCTTGTAGCTTAGCTTGAATGT 59.062 41.667 13.44 0.00 40.44 2.71
2452 10455 2.689983 CCAGCAGTTCAAAAACTCCACT 59.310 45.455 0.00 0.00 43.99 4.00
2472 10475 5.704515 CCACTGTCAAGATCTTCATTCTTGT 59.295 40.000 4.57 0.00 46.54 3.16
2961 11020 2.409651 CGAGGTCACGAGCTAGCC 59.590 66.667 12.13 1.79 39.57 3.93
2998 11057 1.057636 TCGCGTCAAGTCAAACGATC 58.942 50.000 5.77 0.00 41.29 3.69
3015 11074 0.036010 ATCCAAGTTGCTGCTACGCT 60.036 50.000 8.49 0.00 0.00 5.07
3052 11115 4.090057 GCGCTCTGTTGGTTCGCC 62.090 66.667 0.00 0.00 39.91 5.54
3157 11232 1.518903 GGCTGCTGGAGTTTGGACAC 61.519 60.000 0.00 0.00 0.00 3.67
3164 11239 1.270094 TGGAGTTTGGACACTAGCGTG 60.270 52.381 0.00 0.00 46.63 5.34
3238 11316 1.101331 GTCTCGTGTAATCCGGGAGT 58.899 55.000 0.00 1.63 35.07 3.85
3260 11338 1.134098 CCACCCCATCAGTCCATGTAC 60.134 57.143 0.00 0.00 0.00 2.90
3286 11364 1.127951 GGTTTATTGGCTCGTGTCGTG 59.872 52.381 0.00 0.00 0.00 4.35
3361 11452 2.675423 CACTGCCAGCACCAGCAT 60.675 61.111 0.00 0.00 45.49 3.79
3362 11453 1.377594 CACTGCCAGCACCAGCATA 60.378 57.895 0.00 0.00 45.49 3.14
3363 11454 1.077930 ACTGCCAGCACCAGCATAG 60.078 57.895 0.00 0.00 45.49 2.23
3364 11455 1.077930 CTGCCAGCACCAGCATAGT 60.078 57.895 0.00 0.00 45.49 2.12
3365 11456 0.679002 CTGCCAGCACCAGCATAGTT 60.679 55.000 0.00 0.00 45.49 2.24
3366 11457 0.961857 TGCCAGCACCAGCATAGTTG 60.962 55.000 0.00 0.00 45.49 3.16
3367 11458 0.962356 GCCAGCACCAGCATAGTTGT 60.962 55.000 0.00 0.00 45.49 3.32
3368 11459 1.089920 CCAGCACCAGCATAGTTGTC 58.910 55.000 0.00 0.00 45.49 3.18
3369 11460 0.723414 CAGCACCAGCATAGTTGTCG 59.277 55.000 0.00 0.00 45.49 4.35
3412 11511 2.650196 GTGTACGTGTACCGGCCA 59.350 61.111 0.00 0.00 42.24 5.36
3462 11562 5.915196 GTGTTTGATTTGGTGCTAGTCTTTC 59.085 40.000 0.00 0.00 0.00 2.62
3486 12161 6.697019 TCTTACGTACAGTTTAAAGTGGACAC 59.303 38.462 29.38 20.07 42.21 3.67
3488 12163 3.182972 CGTACAGTTTAAAGTGGACACGG 59.817 47.826 29.38 15.22 42.21 4.94
3492 12167 4.334481 ACAGTTTAAAGTGGACACGGAAAG 59.666 41.667 23.54 0.00 36.20 2.62
3517 12192 1.671742 CTGTTGCACCGAGTAGGGT 59.328 57.895 0.00 0.00 46.96 4.34
3518 12193 0.034896 CTGTTGCACCGAGTAGGGTT 59.965 55.000 0.00 0.00 46.96 4.11
3519 12194 0.250124 TGTTGCACCGAGTAGGGTTG 60.250 55.000 0.00 0.00 46.96 3.77
3520 12195 0.953960 GTTGCACCGAGTAGGGTTGG 60.954 60.000 0.00 0.00 46.96 3.77
3523 12198 4.959349 ACCGAGTAGGGTTGGTGA 57.041 55.556 0.00 0.00 46.96 4.02
3524 12199 3.393854 ACCGAGTAGGGTTGGTGAT 57.606 52.632 0.00 0.00 46.96 3.06
3525 12200 1.192428 ACCGAGTAGGGTTGGTGATC 58.808 55.000 0.00 0.00 46.96 2.92
3526 12201 1.273098 ACCGAGTAGGGTTGGTGATCT 60.273 52.381 0.00 0.00 46.96 2.75
3527 12202 1.409427 CCGAGTAGGGTTGGTGATCTC 59.591 57.143 0.00 0.00 35.97 2.75
3528 12203 1.065701 CGAGTAGGGTTGGTGATCTCG 59.934 57.143 0.00 0.00 37.55 4.04
3529 12204 2.100989 GAGTAGGGTTGGTGATCTCGT 58.899 52.381 0.00 0.00 0.00 4.18
3530 12205 2.099427 GAGTAGGGTTGGTGATCTCGTC 59.901 54.545 0.00 0.00 0.00 4.20
3531 12206 2.100989 GTAGGGTTGGTGATCTCGTCT 58.899 52.381 0.00 0.00 0.00 4.18
3532 12207 0.898320 AGGGTTGGTGATCTCGTCTG 59.102 55.000 0.00 0.00 0.00 3.51
3533 12208 0.741221 GGGTTGGTGATCTCGTCTGC 60.741 60.000 0.00 0.00 0.00 4.26
3537 12212 0.813821 TGGTGATCTCGTCTGCTCTG 59.186 55.000 0.00 0.00 0.00 3.35
3546 12221 2.029844 GTCTGCTCTGTTGCCGGAC 61.030 63.158 5.05 0.00 0.00 4.79
3558 12233 0.383949 TGCCGGACAAAGAAACAAGC 59.616 50.000 5.05 0.00 0.00 4.01
3573 12248 2.005188 CAAGCGTTGTCGTCTTGTTC 57.995 50.000 12.61 0.00 41.41 3.18
3577 12252 1.209128 CGTTGTCGTCTTGTTCTGCT 58.791 50.000 0.00 0.00 0.00 4.24
3579 12254 1.261619 GTTGTCGTCTTGTTCTGCTGG 59.738 52.381 0.00 0.00 0.00 4.85
3644 12949 4.545610 CAATTTGCATTGTCGGTTGTACT 58.454 39.130 0.00 0.00 35.86 2.73
3651 12974 3.648339 TTGTCGGTTGTACTACTCCAC 57.352 47.619 7.38 3.02 0.00 4.02
3698 13024 0.601558 CGTACCACCAGGATATCCGG 59.398 60.000 23.13 23.13 42.08 5.14
3699 13025 1.713297 GTACCACCAGGATATCCGGT 58.287 55.000 24.15 24.15 41.34 5.28
3701 13027 4.779475 CACCAGGATATCCGGTGC 57.221 61.111 33.32 9.52 45.85 5.01
3702 13028 1.829456 CACCAGGATATCCGGTGCA 59.171 57.895 33.32 0.00 45.85 4.57
3703 13029 0.397941 CACCAGGATATCCGGTGCAT 59.602 55.000 33.32 15.57 45.85 3.96
3818 13147 2.492019 AAACAAAGCCTGTCGAAAGC 57.508 45.000 0.00 0.00 37.23 3.51
3820 13149 0.814010 ACAAAGCCTGTCGAAAGCGT 60.814 50.000 0.00 0.00 38.98 5.07
3825 13154 1.618640 GCCTGTCGAAAGCGTGAGAC 61.619 60.000 0.00 1.82 38.98 3.36
3830 13159 2.016704 CGAAAGCGTGAGACGTGCT 61.017 57.895 0.00 0.00 44.73 4.40
3834 13163 4.064491 GCGTGAGACGTGCTGCAC 62.064 66.667 22.38 22.38 44.73 4.57
3907 13241 3.076621 TGTACAGTGTACGTACAGGAGG 58.923 50.000 28.02 18.57 43.19 4.30
3913 13247 0.737219 GTACGTACAGGAGGTCGCAT 59.263 55.000 20.67 0.00 0.00 4.73
3914 13248 0.736636 TACGTACAGGAGGTCGCATG 59.263 55.000 0.00 0.00 0.00 4.06
3915 13249 1.226974 CGTACAGGAGGTCGCATGG 60.227 63.158 0.00 0.00 0.00 3.66
3916 13250 1.521681 GTACAGGAGGTCGCATGGC 60.522 63.158 0.00 0.00 0.00 4.40
3917 13251 2.731571 TACAGGAGGTCGCATGGCC 61.732 63.158 0.00 0.00 0.00 5.36
3918 13252 3.790437 CAGGAGGTCGCATGGCCT 61.790 66.667 3.32 0.00 37.91 5.19
3952 13286 2.644418 GCATGGCTTGCGTTGTCA 59.356 55.556 9.75 0.00 42.54 3.58
3953 13287 1.730547 GCATGGCTTGCGTTGTCAC 60.731 57.895 9.75 0.00 42.54 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 1345 8.978539 GTTCATTTAGGACCAACATTTTTCTTC 58.021 33.333 0.00 0.00 0.00 2.87
165 1433 1.879575 AGAATGAGGATTCACGGGGA 58.120 50.000 0.00 0.00 40.59 4.81
205 1479 6.211384 ACTTAGGGTTCATTTGAATTGGAAGG 59.789 38.462 0.00 0.00 36.33 3.46
213 1487 7.831691 TCAATTGACTTAGGGTTCATTTGAA 57.168 32.000 3.38 0.00 32.87 2.69
214 1488 8.421249 AATCAATTGACTTAGGGTTCATTTGA 57.579 30.769 11.07 9.91 37.09 2.69
251 2602 5.997384 ATATTATGGAACGGAGGGAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
255 2606 4.222145 GCACTATATTATGGAACGGAGGGA 59.778 45.833 0.00 0.00 0.00 4.20
256 2607 4.504858 GCACTATATTATGGAACGGAGGG 58.495 47.826 0.00 0.00 0.00 4.30
257 2608 4.223032 AGGCACTATATTATGGAACGGAGG 59.777 45.833 0.00 0.00 36.02 4.30
275 2626 7.826690 TGACTTTTCCAAAAATCTATAGGCAC 58.173 34.615 0.00 0.00 0.00 5.01
276 2627 8.415950 TTGACTTTTCCAAAAATCTATAGGCA 57.584 30.769 0.00 0.00 0.00 4.75
277 2628 9.140286 GTTTGACTTTTCCAAAAATCTATAGGC 57.860 33.333 0.00 0.00 35.57 3.93
283 2634 8.536175 TGTAAGGTTTGACTTTTCCAAAAATCT 58.464 29.630 0.00 0.00 35.57 2.40
287 2638 8.151596 AGTTTGTAAGGTTTGACTTTTCCAAAA 58.848 29.630 0.00 0.00 35.57 2.44
290 2641 6.844097 AGTTTGTAAGGTTTGACTTTTCCA 57.156 33.333 0.00 0.00 32.02 3.53
291 2642 7.815549 TCAAAGTTTGTAAGGTTTGACTTTTCC 59.184 33.333 15.08 0.00 35.75 3.13
292 2643 8.751302 TCAAAGTTTGTAAGGTTTGACTTTTC 57.249 30.769 15.08 0.00 35.75 2.29
299 2650 6.885735 CTTGGTCAAAGTTTGTAAGGTTTG 57.114 37.500 15.08 0.00 0.00 2.93
312 2663 4.981806 TTCTCCACAAACTTGGTCAAAG 57.018 40.909 0.00 0.00 42.07 2.77
313 2664 5.730296 TTTTCTCCACAAACTTGGTCAAA 57.270 34.783 0.00 0.00 37.93 2.69
314 2665 5.011125 TGTTTTTCTCCACAAACTTGGTCAA 59.989 36.000 0.00 0.00 37.93 3.18
315 2666 4.524714 TGTTTTTCTCCACAAACTTGGTCA 59.475 37.500 0.00 0.00 37.93 4.02
316 2667 5.066968 TGTTTTTCTCCACAAACTTGGTC 57.933 39.130 0.00 0.00 37.93 4.02
317 2668 5.675684 ATGTTTTTCTCCACAAACTTGGT 57.324 34.783 0.00 0.00 37.93 3.67
318 2669 6.983474 AAATGTTTTTCTCCACAAACTTGG 57.017 33.333 0.00 0.00 38.10 3.61
319 2670 8.472683 TGTAAATGTTTTTCTCCACAAACTTG 57.527 30.769 0.00 0.00 34.52 3.16
320 2671 9.665719 AATGTAAATGTTTTTCTCCACAAACTT 57.334 25.926 0.00 0.00 34.52 2.66
321 2672 9.665719 AAATGTAAATGTTTTTCTCCACAAACT 57.334 25.926 0.00 0.00 34.52 2.66
478 2829 8.956426 CCGTTCCATAATGTAATGCCTATAAAT 58.044 33.333 0.00 0.00 0.00 1.40
479 2830 8.158132 TCCGTTCCATAATGTAATGCCTATAAA 58.842 33.333 0.00 0.00 0.00 1.40
480 2831 7.681679 TCCGTTCCATAATGTAATGCCTATAA 58.318 34.615 0.00 0.00 0.00 0.98
481 2832 7.247456 TCCGTTCCATAATGTAATGCCTATA 57.753 36.000 0.00 0.00 0.00 1.31
482 2833 6.121776 TCCGTTCCATAATGTAATGCCTAT 57.878 37.500 0.00 0.00 0.00 2.57
483 2834 5.512404 CCTCCGTTCCATAATGTAATGCCTA 60.512 44.000 0.00 0.00 0.00 3.93
484 2835 4.389374 CTCCGTTCCATAATGTAATGCCT 58.611 43.478 0.00 0.00 0.00 4.75
485 2836 3.502211 CCTCCGTTCCATAATGTAATGCC 59.498 47.826 0.00 0.00 0.00 4.40
486 2837 3.502211 CCCTCCGTTCCATAATGTAATGC 59.498 47.826 0.00 0.00 0.00 3.56
487 2838 4.968259 TCCCTCCGTTCCATAATGTAATG 58.032 43.478 0.00 0.00 0.00 1.90
488 2839 4.658901 ACTCCCTCCGTTCCATAATGTAAT 59.341 41.667 0.00 0.00 0.00 1.89
489 2840 4.035112 ACTCCCTCCGTTCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
490 2841 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
491 2842 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
492 2843 4.101119 ACTTACTCCCTCCGTTCCATAATG 59.899 45.833 0.00 0.00 0.00 1.90
493 2844 4.296056 ACTTACTCCCTCCGTTCCATAAT 58.704 43.478 0.00 0.00 0.00 1.28
494 2845 3.703052 GACTTACTCCCTCCGTTCCATAA 59.297 47.826 0.00 0.00 0.00 1.90
495 2846 3.294214 GACTTACTCCCTCCGTTCCATA 58.706 50.000 0.00 0.00 0.00 2.74
496 2847 2.108970 GACTTACTCCCTCCGTTCCAT 58.891 52.381 0.00 0.00 0.00 3.41
497 2848 1.203087 TGACTTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
498 2849 1.553706 TGACTTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
499 2850 3.889520 ATTGACTTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
500 2851 4.607239 TCTATTGACTTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
501 2852 4.246712 TCTATTGACTTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
502 2853 6.896021 TTATCTATTGACTTACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
503 2854 8.871125 TCATTTATCTATTGACTTACTCCCTCC 58.129 37.037 0.00 0.00 0.00 4.30
571 2922 6.888430 ACGTGTTTGTTTACTCATCTCAATC 58.112 36.000 0.00 0.00 0.00 2.67
573 2924 5.813157 TGACGTGTTTGTTTACTCATCTCAA 59.187 36.000 0.00 0.00 0.00 3.02
849 3267 2.160813 GTCTCTCCGTCACACTCTTCTC 59.839 54.545 0.00 0.00 0.00 2.87
856 3274 1.442857 CAGCGTCTCTCCGTCACAC 60.443 63.158 0.00 0.00 0.00 3.82
875 3293 2.046507 GGAGCACCTGCAGTCCTG 60.047 66.667 13.81 5.96 45.16 3.86
876 3294 2.527624 TGGAGCACCTGCAGTCCT 60.528 61.111 18.84 9.60 45.16 3.85
877 3295 2.359230 GTGGAGCACCTGCAGTCC 60.359 66.667 13.81 13.33 45.16 3.85
929 3347 1.078848 GGTGTAGTGCAGCTCCTGG 60.079 63.158 2.90 0.00 41.99 4.45
997 3415 3.431207 GGGCATCCAGAAATGGTCATTTG 60.431 47.826 12.94 1.80 40.77 2.32
1045 3464 0.449388 GGCACGATCTGGCTTCTTTG 59.551 55.000 10.21 0.00 42.36 2.77
1098 3517 1.300620 CGGCGAGTTGGAAGACACA 60.301 57.895 0.00 0.00 0.00 3.72
1356 3778 1.446272 GACGTGCTCGGGGAAGAAG 60.446 63.158 13.32 0.00 41.85 2.85
1755 4591 0.679002 AGAACGTAGCGTGGCTAGGA 60.679 55.000 20.28 0.00 46.03 2.94
1758 4597 0.961857 TGGAGAACGTAGCGTGGCTA 60.962 55.000 0.00 0.00 39.99 3.93
1783 4636 1.594293 AGGCACGAACTGAACACGG 60.594 57.895 0.00 0.00 0.00 4.94
1926 4810 3.623330 GAAATCGTACGCGGCGGG 61.623 66.667 27.37 23.00 38.89 6.13
2051 4937 5.632244 TTGATAGTGCGACTAGTGTGTTA 57.368 39.130 0.00 0.00 33.66 2.41
2056 4942 4.504461 GTCCATTTGATAGTGCGACTAGTG 59.496 45.833 0.00 0.00 33.66 2.74
2117 5012 3.103911 CCACACGAAGGACGACGC 61.104 66.667 0.00 0.00 45.77 5.19
2119 5014 0.311790 TACACCACACGAAGGACGAC 59.688 55.000 0.00 0.00 45.77 4.34
2153 5051 6.104665 ACTACGGTACTTATTTTTCTGGCTC 58.895 40.000 0.00 0.00 0.00 4.70
2156 5054 9.603298 GAAAAACTACGGTACTTATTTTTCTGG 57.397 33.333 17.34 0.00 40.42 3.86
2192 5090 5.391523 CCAAACTGTGTCTCGACAAAAGAAA 60.392 40.000 14.44 0.00 43.77 2.52
2201 5099 0.750249 TCTGCCAAACTGTGTCTCGA 59.250 50.000 0.00 0.00 0.00 4.04
2230 5134 1.532868 AGCACAGCAAACAAGTCGATC 59.467 47.619 0.00 0.00 0.00 3.69
2231 5135 1.597742 AGCACAGCAAACAAGTCGAT 58.402 45.000 0.00 0.00 0.00 3.59
2232 5136 1.378531 AAGCACAGCAAACAAGTCGA 58.621 45.000 0.00 0.00 0.00 4.20
2233 5137 1.847999 CAAAGCACAGCAAACAAGTCG 59.152 47.619 0.00 0.00 0.00 4.18
2324 10322 1.201429 TTGTCCTCTTCCAGGGGCTC 61.201 60.000 0.00 0.00 43.67 4.70
2338 10336 3.748568 TGTTTTGCTTTGGTTGTTTGTCC 59.251 39.130 0.00 0.00 0.00 4.02
2357 10355 1.890489 GTGGCCGTTTATTTCCCTGTT 59.110 47.619 0.00 0.00 0.00 3.16
2377 10376 4.122776 ACTAAAGTTATGCATGCTCTCGG 58.877 43.478 20.33 8.10 0.00 4.63
2381 10380 5.954335 ACCAAACTAAAGTTATGCATGCTC 58.046 37.500 20.33 6.92 37.25 4.26
2408 10411 7.985476 TGGAAAATACATTCAAGCTAAGCTAC 58.015 34.615 0.00 0.00 38.25 3.58
2425 10428 6.097554 TGGAGTTTTTGAACTGCTGGAAAATA 59.902 34.615 11.19 0.00 41.06 1.40
2758 10803 3.766691 GCGAAGGTGGACCGGCTA 61.767 66.667 0.00 0.00 42.08 3.93
2764 10809 4.980805 TGGCACGCGAAGGTGGAC 62.981 66.667 15.93 0.00 38.36 4.02
2961 11020 1.303888 ACCATGCTTGGAGTGGCTG 60.304 57.895 24.48 0.00 46.92 4.85
2985 11044 3.003689 AGCAACTTGGATCGTTTGACTTG 59.996 43.478 0.00 0.00 0.00 3.16
3032 11091 4.430423 GAACCAACAGAGCGCGCG 62.430 66.667 28.44 28.44 0.00 6.86
3033 11092 4.430423 CGAACCAACAGAGCGCGC 62.430 66.667 26.66 26.66 0.00 6.86
3034 11093 4.430423 GCGAACCAACAGAGCGCG 62.430 66.667 0.00 0.00 38.24 6.86
3052 11115 3.439540 CCACGCCACCGGGAAATG 61.440 66.667 6.32 0.00 41.39 2.32
3157 11232 1.939974 TGATAAAGCTGCCACGCTAG 58.060 50.000 0.00 0.00 39.86 3.42
3190 11268 2.703536 TCAAAGAAGACAGTACAGGGCA 59.296 45.455 0.00 0.00 0.00 5.36
3238 11316 1.084652 ATGGACTGATGGGGTGGGA 59.915 57.895 0.00 0.00 0.00 4.37
3260 11338 0.446222 CGAGCCAATAAACCACACGG 59.554 55.000 0.00 0.00 38.77 4.94
3271 11349 1.733041 CGACACGACACGAGCCAAT 60.733 57.895 0.00 0.00 0.00 3.16
3286 11364 2.861935 TGACGGAAAGAAAGAACACGAC 59.138 45.455 0.00 0.00 0.00 4.34
3360 11451 4.058721 TGCACATGCTATCGACAACTAT 57.941 40.909 5.31 0.00 42.66 2.12
3361 11452 3.518634 TGCACATGCTATCGACAACTA 57.481 42.857 5.31 0.00 42.66 2.24
3362 11453 2.385013 TGCACATGCTATCGACAACT 57.615 45.000 5.31 0.00 42.66 3.16
3363 11454 2.978013 CATGCACATGCTATCGACAAC 58.022 47.619 5.31 0.00 42.66 3.32
3412 11511 1.227089 CGCTGCGATTCTGGCTACT 60.227 57.895 18.66 0.00 0.00 2.57
3418 11517 1.712081 CAGAACCGCTGCGATTCTG 59.288 57.895 36.11 36.11 42.36 3.02
3486 12161 1.370414 CAACAGCAACGCCTTTCCG 60.370 57.895 0.00 0.00 0.00 4.30
3488 12163 1.065600 TGCAACAGCAACGCCTTTC 59.934 52.632 0.00 0.00 34.85 2.62
3510 12185 2.100989 GACGAGATCACCAACCCTACT 58.899 52.381 0.00 0.00 0.00 2.57
3517 12192 1.203287 CAGAGCAGACGAGATCACCAA 59.797 52.381 0.00 0.00 0.00 3.67
3518 12193 0.813821 CAGAGCAGACGAGATCACCA 59.186 55.000 0.00 0.00 0.00 4.17
3519 12194 0.814457 ACAGAGCAGACGAGATCACC 59.186 55.000 0.00 0.00 0.00 4.02
3520 12195 2.257894 CAACAGAGCAGACGAGATCAC 58.742 52.381 0.00 0.00 0.00 3.06
3522 12197 1.276415 GCAACAGAGCAGACGAGATC 58.724 55.000 0.00 0.00 0.00 2.75
3523 12198 0.108424 GGCAACAGAGCAGACGAGAT 60.108 55.000 0.00 0.00 35.83 2.75
3524 12199 1.290324 GGCAACAGAGCAGACGAGA 59.710 57.895 0.00 0.00 35.83 4.04
3525 12200 2.091112 CGGCAACAGAGCAGACGAG 61.091 63.158 0.00 0.00 35.83 4.18
3526 12201 2.049156 CGGCAACAGAGCAGACGA 60.049 61.111 0.00 0.00 35.83 4.20
3527 12202 3.114616 CCGGCAACAGAGCAGACG 61.115 66.667 0.00 0.00 35.83 4.18
3528 12203 2.029844 GTCCGGCAACAGAGCAGAC 61.030 63.158 0.00 0.00 35.83 3.51
3529 12204 2.038814 TTGTCCGGCAACAGAGCAGA 62.039 55.000 0.00 0.00 35.83 4.26
3530 12205 1.165907 TTTGTCCGGCAACAGAGCAG 61.166 55.000 10.30 0.00 36.72 4.24
3531 12206 1.153066 TTTGTCCGGCAACAGAGCA 60.153 52.632 10.30 0.00 36.72 4.26
3532 12207 0.884704 TCTTTGTCCGGCAACAGAGC 60.885 55.000 10.30 0.00 36.72 4.09
3533 12208 1.593196 TTCTTTGTCCGGCAACAGAG 58.407 50.000 10.30 8.77 36.72 3.35
3537 12212 2.459934 CTTGTTTCTTTGTCCGGCAAC 58.540 47.619 10.30 0.00 36.72 4.17
3546 12221 2.776225 GACGACAACGCTTGTTTCTTTG 59.224 45.455 0.00 0.00 45.52 2.77
3558 12233 1.071239 CAGCAGAACAAGACGACAACG 60.071 52.381 0.00 0.00 45.75 4.10
3623 12928 4.846779 AGTACAACCGACAATGCAAATT 57.153 36.364 0.00 0.00 0.00 1.82
3631 12936 2.030893 CGTGGAGTAGTACAACCGACAA 60.031 50.000 2.52 0.00 0.00 3.18
3633 12938 1.135575 CCGTGGAGTAGTACAACCGAC 60.136 57.143 2.52 6.20 0.00 4.79
3644 12949 2.889617 CATGGCGTCCGTGGAGTA 59.110 61.111 9.46 0.00 36.92 2.59
3679 13005 0.601558 CCGGATATCCTGGTGGTACG 59.398 60.000 19.61 2.99 34.23 3.67
3685 13011 1.623811 GTATGCACCGGATATCCTGGT 59.376 52.381 24.15 24.15 41.34 4.00
3686 13012 1.623311 TGTATGCACCGGATATCCTGG 59.377 52.381 23.13 23.13 36.31 4.45
3722 13051 3.196469 TCAAAACCTGCCACAAAATCACA 59.804 39.130 0.00 0.00 0.00 3.58
3834 13163 3.257561 CCAGAATCGACCGCGCTG 61.258 66.667 5.56 0.00 37.46 5.18
3837 13166 3.554692 GCACCAGAATCGACCGCG 61.555 66.667 0.00 0.00 39.35 6.46
3842 13171 0.674581 CAGCCTTGCACCAGAATCGA 60.675 55.000 0.00 0.00 0.00 3.59
3866 13195 2.095314 CAGGAGATGGAGATGTCGATCG 60.095 54.545 9.36 9.36 41.54 3.69
3867 13196 2.890311 ACAGGAGATGGAGATGTCGATC 59.110 50.000 6.74 6.74 38.01 3.69
3868 13197 2.956132 ACAGGAGATGGAGATGTCGAT 58.044 47.619 0.00 0.00 0.00 3.59
3869 13198 2.443958 ACAGGAGATGGAGATGTCGA 57.556 50.000 0.00 0.00 0.00 4.20
3936 13270 1.440850 CGTGACAACGCAAGCCATG 60.441 57.895 0.00 0.00 43.98 3.66
3937 13271 2.945984 CGTGACAACGCAAGCCAT 59.054 55.556 0.00 0.00 43.98 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.