Multiple sequence alignment - TraesCS6B01G158500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G158500 chr6B 100.000 2882 0 0 1 2882 160924593 160921712 0.000000e+00 5323.0
1 TraesCS6B01G158500 chr6B 94.767 1395 56 4 773 2158 161269525 161268139 0.000000e+00 2156.0
2 TraesCS6B01G158500 chr6B 87.760 384 30 6 2479 2851 161267727 161267350 1.590000e-117 433.0
3 TraesCS6B01G158500 chr6B 80.636 346 46 13 2151 2480 161268110 161267770 6.170000e-62 248.0
4 TraesCS6B01G158500 chr6B 90.132 152 6 7 425 572 161269668 161269522 3.790000e-44 189.0
5 TraesCS6B01G158500 chr6A 91.375 2087 131 24 792 2851 101877627 101875563 0.000000e+00 2811.0
6 TraesCS6B01G158500 chr6A 88.021 192 15 6 385 572 101878967 101878780 1.340000e-53 220.0
7 TraesCS6B01G158500 chr6A 91.200 125 8 3 614 738 477910757 477910878 1.780000e-37 167.0
8 TraesCS6B01G158500 chr6A 79.899 199 32 6 1181 1372 101991714 101991517 3.870000e-29 139.0
9 TraesCS6B01G158500 chr6A 92.391 92 4 3 2037 2128 586922210 586922122 8.380000e-26 128.0
10 TraesCS6B01G158500 chr6D 91.893 1690 76 19 787 2435 85563969 85565638 0.000000e+00 2305.0
11 TraesCS6B01G158500 chr6D 91.508 1578 106 11 773 2336 84672898 84671335 0.000000e+00 2146.0
12 TraesCS6B01G158500 chr6D 89.306 346 23 6 2507 2845 85565619 85565957 3.430000e-114 422.0
13 TraesCS6B01G158500 chr6D 84.932 292 29 7 2570 2851 84671076 84670790 6.080000e-72 281.0
14 TraesCS6B01G158500 chr6D 96.078 51 2 0 1 51 84673361 84673311 1.840000e-12 84.2
15 TraesCS6B01G158500 chr3D 86.982 169 16 4 2270 2435 589848861 589849026 4.900000e-43 185.0
16 TraesCS6B01G158500 chr3D 90.625 128 10 2 632 758 350668389 350668515 4.940000e-38 169.0
17 TraesCS6B01G158500 chr3D 92.391 92 6 1 2037 2128 589848749 589848839 2.330000e-26 130.0
18 TraesCS6B01G158500 chr3D 89.011 91 10 0 47 137 509080421 509080511 2.350000e-21 113.0
19 TraesCS6B01G158500 chr3D 87.234 94 11 1 41 134 316814108 316814200 3.930000e-19 106.0
20 TraesCS6B01G158500 chr3D 95.556 45 2 0 735 779 56594320 56594276 3.980000e-09 73.1
21 TraesCS6B01G158500 chr7D 86.391 169 17 4 2270 2435 596787606 596787441 2.280000e-41 180.0
22 TraesCS6B01G158500 chr7D 85.294 170 17 6 2270 2435 628447351 628447516 4.940000e-38 169.0
23 TraesCS6B01G158500 chr7D 84.868 152 22 1 233 384 145767108 145766958 4.970000e-33 152.0
24 TraesCS6B01G158500 chr7D 93.478 92 5 1 2037 2128 38539555 38539645 5.010000e-28 135.0
25 TraesCS6B01G158500 chr7D 93.478 92 5 1 2037 2128 596787718 596787628 5.010000e-28 135.0
26 TraesCS6B01G158500 chr4A 85.965 171 16 6 2269 2435 677399425 677399591 2.950000e-40 176.0
27 TraesCS6B01G158500 chr4A 93.860 114 7 0 629 742 557549902 557549789 3.820000e-39 172.0
28 TraesCS6B01G158500 chr4A 93.860 114 7 0 629 742 576122160 576122273 3.820000e-39 172.0
29 TraesCS6B01G158500 chr4A 97.561 41 1 0 735 775 395024458 395024418 1.430000e-08 71.3
30 TraesCS6B01G158500 chr1B 85.882 170 18 4 2269 2435 663376028 663375862 2.950000e-40 176.0
31 TraesCS6B01G158500 chr5D 85.799 169 18 4 2270 2435 427785116 427784951 1.060000e-39 174.0
32 TraesCS6B01G158500 chr5D 88.298 94 11 0 43 136 220693971 220694064 2.350000e-21 113.0
33 TraesCS6B01G158500 chr5D 92.063 63 4 1 1269 1330 87173672 87173610 1.420000e-13 87.9
34 TraesCS6B01G158500 chr5D 80.531 113 14 8 1225 1332 488900951 488900842 2.380000e-11 80.5
35 TraesCS6B01G158500 chr5D 100.000 40 0 0 735 774 72499993 72500032 1.110000e-09 75.0
36 TraesCS6B01G158500 chr5D 97.561 41 0 1 735 774 447207345 447207305 5.150000e-08 69.4
37 TraesCS6B01G158500 chr2D 85.882 170 16 7 2270 2435 397139833 397139668 1.060000e-39 174.0
38 TraesCS6B01G158500 chr2D 81.679 131 22 2 262 391 523134858 523134987 1.090000e-19 108.0
39 TraesCS6B01G158500 chr1D 92.623 122 8 1 632 753 247520958 247521078 1.060000e-39 174.0
40 TraesCS6B01G158500 chr1D 92.391 92 5 2 2037 2128 84008762 84008851 2.330000e-26 130.0
41 TraesCS6B01G158500 chr7A 95.370 108 5 0 632 739 135703352 135703245 3.820000e-39 172.0
42 TraesCS6B01G158500 chr7A 92.391 92 5 2 2037 2128 663033024 663032935 2.330000e-26 130.0
43 TraesCS6B01G158500 chr7B 85.380 171 17 6 2269 2435 668460617 668460451 1.370000e-38 171.0
44 TraesCS6B01G158500 chr7B 86.713 143 11 8 601 739 495311779 495311917 4.970000e-33 152.0
45 TraesCS6B01G158500 chr7B 97.727 44 1 0 735 778 164586201 164586158 3.080000e-10 76.8
46 TraesCS6B01G158500 chr7B 95.455 44 0 2 736 778 246514662 246514704 5.150000e-08 69.4
47 TraesCS6B01G158500 chr5A 94.545 110 6 0 629 738 16499952 16500061 1.370000e-38 171.0
48 TraesCS6B01G158500 chr5A 89.394 132 12 2 608 738 597210782 597210912 6.390000e-37 165.0
49 TraesCS6B01G158500 chr5A 80.531 113 14 8 1225 1332 609956089 609955980 2.380000e-11 80.5
50 TraesCS6B01G158500 chr2A 93.182 88 6 0 49 136 387038905 387038992 2.330000e-26 130.0
51 TraesCS6B01G158500 chr2A 86.458 96 13 0 45 140 71546674 71546579 3.930000e-19 106.0
52 TraesCS6B01G158500 chr2B 81.529 157 23 6 240 393 374105753 374105906 1.080000e-24 124.0
53 TraesCS6B01G158500 chr2B 90.588 85 8 0 50 134 228983357 228983441 2.350000e-21 113.0
54 TraesCS6B01G158500 chr5B 91.954 87 6 1 50 136 432744706 432744621 1.400000e-23 121.0
55 TraesCS6B01G158500 chr5B 92.063 63 4 1 1269 1330 93212406 93212344 1.420000e-13 87.9
56 TraesCS6B01G158500 chr5B 95.349 43 2 0 735 777 168390324 168390282 5.150000e-08 69.4
57 TraesCS6B01G158500 chr4B 78.857 175 34 3 232 405 530237427 530237599 6.530000e-22 115.0
58 TraesCS6B01G158500 chr3A 90.000 90 7 2 50 139 206794546 206794459 6.530000e-22 115.0
59 TraesCS6B01G158500 chr3A 84.444 90 14 0 232 321 118496891 118496980 3.960000e-14 89.8
60 TraesCS6B01G158500 chr3A 100.000 37 0 0 738 774 702010716 702010680 5.150000e-08 69.4
61 TraesCS6B01G158500 chr1A 89.655 87 9 0 50 136 560378198 560378112 8.440000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G158500 chr6B 160921712 160924593 2881 True 5323.000000 5323 100.000000 1 2882 1 chr6B.!!$R1 2881
1 TraesCS6B01G158500 chr6B 161267350 161269668 2318 True 756.500000 2156 88.323750 425 2851 4 chr6B.!!$R2 2426
2 TraesCS6B01G158500 chr6A 101875563 101878967 3404 True 1515.500000 2811 89.698000 385 2851 2 chr6A.!!$R3 2466
3 TraesCS6B01G158500 chr6D 85563969 85565957 1988 False 1363.500000 2305 90.599500 787 2845 2 chr6D.!!$F1 2058
4 TraesCS6B01G158500 chr6D 84670790 84673361 2571 True 837.066667 2146 90.839333 1 2851 3 chr6D.!!$R1 2850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 591 0.105913 CTACTCCCTCCCCTCAGTCC 60.106 65.0 0.0 0.0 0.0 3.85 F
716 721 0.109086 ACATCCACTTCTGCGACGAG 60.109 55.0 0.0 0.0 0.0 4.18 F
770 775 0.109723 CTTGTTTTGGGACGGAGGGA 59.890 55.0 0.0 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 2841 0.467474 ATCCCCGTCATCAGTAGCGA 60.467 55.0 0.00 0.0 0.0 4.93 R
1794 2959 0.605589 GGTCAGTGTCAGTCCTCAGG 59.394 60.0 0.00 0.0 0.0 3.86 R
1939 3110 0.881159 AATTCGTCGCGTGTTTCCCA 60.881 50.0 5.77 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.925165 CCATTCATGTGCCCTCAATTTTATAC 59.075 38.462 0.00 0.00 0.00 1.47
52 53 7.201938 CCATTCATGTGCCCTCAATTTTATACT 60.202 37.037 0.00 0.00 0.00 2.12
53 54 6.942532 TCATGTGCCCTCAATTTTATACTC 57.057 37.500 0.00 0.00 0.00 2.59
54 55 5.827797 TCATGTGCCCTCAATTTTATACTCC 59.172 40.000 0.00 0.00 0.00 3.85
55 56 4.532834 TGTGCCCTCAATTTTATACTCCC 58.467 43.478 0.00 0.00 0.00 4.30
56 57 4.229582 TGTGCCCTCAATTTTATACTCCCT 59.770 41.667 0.00 0.00 0.00 4.20
57 58 4.822350 GTGCCCTCAATTTTATACTCCCTC 59.178 45.833 0.00 0.00 0.00 4.30
58 59 4.726825 TGCCCTCAATTTTATACTCCCTCT 59.273 41.667 0.00 0.00 0.00 3.69
59 60 5.066593 GCCCTCAATTTTATACTCCCTCTG 58.933 45.833 0.00 0.00 0.00 3.35
60 61 5.398012 GCCCTCAATTTTATACTCCCTCTGT 60.398 44.000 0.00 0.00 0.00 3.41
61 62 6.292150 CCCTCAATTTTATACTCCCTCTGTC 58.708 44.000 0.00 0.00 0.00 3.51
62 63 6.292150 CCTCAATTTTATACTCCCTCTGTCC 58.708 44.000 0.00 0.00 0.00 4.02
63 64 6.100424 CCTCAATTTTATACTCCCTCTGTCCT 59.900 42.308 0.00 0.00 0.00 3.85
64 65 7.290248 CCTCAATTTTATACTCCCTCTGTCCTA 59.710 40.741 0.00 0.00 0.00 2.94
65 66 8.618240 TCAATTTTATACTCCCTCTGTCCTAA 57.382 34.615 0.00 0.00 0.00 2.69
66 67 9.053472 TCAATTTTATACTCCCTCTGTCCTAAA 57.947 33.333 0.00 0.00 0.00 1.85
67 68 9.681062 CAATTTTATACTCCCTCTGTCCTAAAA 57.319 33.333 0.00 0.00 0.00 1.52
75 76 8.855804 ACTCCCTCTGTCCTAAAATATAAGAA 57.144 34.615 0.00 0.00 0.00 2.52
76 77 8.706521 ACTCCCTCTGTCCTAAAATATAAGAAC 58.293 37.037 0.00 0.00 0.00 3.01
77 78 7.723324 TCCCTCTGTCCTAAAATATAAGAACG 58.277 38.462 0.00 0.00 0.00 3.95
78 79 7.343833 TCCCTCTGTCCTAAAATATAAGAACGT 59.656 37.037 0.00 0.00 0.00 3.99
79 80 8.636213 CCCTCTGTCCTAAAATATAAGAACGTA 58.364 37.037 0.00 0.00 0.00 3.57
98 99 9.431887 AGAACGTATTTGACACTATGTTAATGT 57.568 29.630 0.00 0.00 29.49 2.71
127 128 9.855021 AAAACATTCTTATATTTTGGGACGAAG 57.145 29.630 0.00 0.00 0.00 3.79
128 129 7.568199 ACATTCTTATATTTTGGGACGAAGG 57.432 36.000 0.00 0.00 0.00 3.46
129 130 6.546034 ACATTCTTATATTTTGGGACGAAGGG 59.454 38.462 0.00 0.00 0.00 3.95
130 131 5.961398 TCTTATATTTTGGGACGAAGGGA 57.039 39.130 0.00 0.00 0.00 4.20
131 132 5.925509 TCTTATATTTTGGGACGAAGGGAG 58.074 41.667 0.00 0.00 0.00 4.30
132 133 5.427481 TCTTATATTTTGGGACGAAGGGAGT 59.573 40.000 0.00 0.00 0.00 3.85
133 134 6.612456 TCTTATATTTTGGGACGAAGGGAGTA 59.388 38.462 0.00 0.00 0.00 2.59
146 147 5.105837 ACGAAGGGAGTAGTAATCTCAACAC 60.106 44.000 0.00 0.00 34.04 3.32
152 153 5.393243 GGAGTAGTAATCTCAACACGAGCTT 60.393 44.000 0.00 0.00 41.98 3.74
153 154 5.642686 AGTAGTAATCTCAACACGAGCTTC 58.357 41.667 0.00 0.00 41.98 3.86
154 155 3.502920 AGTAATCTCAACACGAGCTTCG 58.497 45.455 0.00 0.00 46.93 3.79
158 159 2.596452 TCTCAACACGAGCTTCGAATC 58.404 47.619 11.64 0.00 43.74 2.52
195 197 2.625790 TGTGTAACATCAAAAGGCACCC 59.374 45.455 0.00 0.00 45.67 4.61
196 198 2.625790 GTGTAACATCAAAAGGCACCCA 59.374 45.455 0.00 0.00 36.32 4.51
211 213 4.042187 AGGCACCCACCTCTCATAATATTC 59.958 45.833 0.00 0.00 33.62 1.75
213 215 4.042187 GCACCCACCTCTCATAATATTCCT 59.958 45.833 0.00 0.00 0.00 3.36
220 222 8.210946 CCACCTCTCATAATATTCCTGTGTTTA 58.789 37.037 0.00 0.00 0.00 2.01
241 244 7.710907 TGTTTATTCAAGGATTCGGATAGTCAG 59.289 37.037 0.00 0.00 0.00 3.51
242 245 3.735237 TCAAGGATTCGGATAGTCAGC 57.265 47.619 0.00 0.00 0.00 4.26
246 249 2.034812 AGGATTCGGATAGTCAGCGAAC 59.965 50.000 0.00 0.00 0.00 3.95
251 254 2.419673 TCGGATAGTCAGCGAACGTTAA 59.580 45.455 0.00 0.00 0.00 2.01
257 260 4.400036 AGTCAGCGAACGTTAAATTTCC 57.600 40.909 0.00 0.00 0.00 3.13
301 304 5.493133 TTTTATGTCAAGTTGTGTTCGCT 57.507 34.783 2.11 0.00 0.00 4.93
318 321 0.807496 GCTGAGGATGGCAAGTTCAC 59.193 55.000 0.00 0.00 0.00 3.18
332 335 3.678056 AGTTCACTTGGCGAGTATTGA 57.322 42.857 7.16 0.00 36.65 2.57
334 337 4.385825 AGTTCACTTGGCGAGTATTGAAA 58.614 39.130 7.16 0.00 36.65 2.69
336 339 4.742438 TCACTTGGCGAGTATTGAAAAC 57.258 40.909 7.16 0.00 36.65 2.43
348 351 4.583073 AGTATTGAAAACCCGCTTCAGTTT 59.417 37.500 0.00 0.00 37.80 2.66
373 376 2.679355 TTGCCAGAAAAATCGACGTG 57.321 45.000 0.00 0.00 0.00 4.49
374 377 0.237235 TGCCAGAAAAATCGACGTGC 59.763 50.000 0.00 0.00 0.00 5.34
375 378 0.517316 GCCAGAAAAATCGACGTGCT 59.483 50.000 0.00 0.00 0.00 4.40
376 379 1.069227 GCCAGAAAAATCGACGTGCTT 60.069 47.619 0.00 0.00 0.00 3.91
377 380 2.574322 CCAGAAAAATCGACGTGCTTG 58.426 47.619 0.00 0.00 0.00 4.01
378 381 1.971962 CAGAAAAATCGACGTGCTTGC 59.028 47.619 0.00 0.00 0.00 4.01
379 382 1.601903 AGAAAAATCGACGTGCTTGCA 59.398 42.857 0.00 0.00 0.00 4.08
380 383 2.032799 AGAAAAATCGACGTGCTTGCAA 59.967 40.909 0.00 0.00 0.00 4.08
381 384 2.483583 AAAATCGACGTGCTTGCAAA 57.516 40.000 0.00 0.00 0.00 3.68
382 385 1.753956 AAATCGACGTGCTTGCAAAC 58.246 45.000 0.00 0.00 0.00 2.93
383 386 0.944386 AATCGACGTGCTTGCAAACT 59.056 45.000 0.00 0.00 0.00 2.66
384 387 1.790755 ATCGACGTGCTTGCAAACTA 58.209 45.000 0.00 0.00 0.00 2.24
385 388 1.573026 TCGACGTGCTTGCAAACTAA 58.427 45.000 0.00 0.00 0.00 2.24
386 389 1.934525 TCGACGTGCTTGCAAACTAAA 59.065 42.857 0.00 0.00 0.00 1.85
387 390 2.546368 TCGACGTGCTTGCAAACTAAAT 59.454 40.909 0.00 0.00 0.00 1.40
412 415 1.470098 CGTCCTCCTGCCATGAAAAAG 59.530 52.381 0.00 0.00 0.00 2.27
413 416 2.795329 GTCCTCCTGCCATGAAAAAGA 58.205 47.619 0.00 0.00 0.00 2.52
418 421 4.021916 CTCCTGCCATGAAAAAGATTCCT 58.978 43.478 0.00 0.00 0.00 3.36
453 457 8.806177 AATTAACGTCGATTTTTAGCCTTTTT 57.194 26.923 0.00 0.00 0.00 1.94
491 495 5.753744 TGAAAATTCACATTACACACCGAC 58.246 37.500 0.00 0.00 31.01 4.79
492 496 5.297029 TGAAAATTCACATTACACACCGACA 59.703 36.000 0.00 0.00 31.01 4.35
493 497 5.957842 AAATTCACATTACACACCGACAT 57.042 34.783 0.00 0.00 0.00 3.06
580 585 3.293215 AAAAGAACTACTCCCTCCCCT 57.707 47.619 0.00 0.00 0.00 4.79
581 586 2.553911 AAGAACTACTCCCTCCCCTC 57.446 55.000 0.00 0.00 0.00 4.30
582 587 1.394532 AGAACTACTCCCTCCCCTCA 58.605 55.000 0.00 0.00 0.00 3.86
583 588 1.289530 AGAACTACTCCCTCCCCTCAG 59.710 57.143 0.00 0.00 0.00 3.35
584 589 1.007359 GAACTACTCCCTCCCCTCAGT 59.993 57.143 0.00 0.00 0.00 3.41
585 590 0.632294 ACTACTCCCTCCCCTCAGTC 59.368 60.000 0.00 0.00 0.00 3.51
586 591 0.105913 CTACTCCCTCCCCTCAGTCC 60.106 65.000 0.00 0.00 0.00 3.85
587 592 1.591280 TACTCCCTCCCCTCAGTCCC 61.591 65.000 0.00 0.00 0.00 4.46
588 593 2.874245 TCCCTCCCCTCAGTCCCA 60.874 66.667 0.00 0.00 0.00 4.37
589 594 2.124996 CCCTCCCCTCAGTCCCAA 59.875 66.667 0.00 0.00 0.00 4.12
590 595 1.541368 CCCTCCCCTCAGTCCCAAA 60.541 63.158 0.00 0.00 0.00 3.28
591 596 1.140134 CCCTCCCCTCAGTCCCAAAA 61.140 60.000 0.00 0.00 0.00 2.44
592 597 1.002857 CCTCCCCTCAGTCCCAAAAT 58.997 55.000 0.00 0.00 0.00 1.82
593 598 2.205342 CCTCCCCTCAGTCCCAAAATA 58.795 52.381 0.00 0.00 0.00 1.40
594 599 2.580783 CCTCCCCTCAGTCCCAAAATAA 59.419 50.000 0.00 0.00 0.00 1.40
595 600 3.372025 CCTCCCCTCAGTCCCAAAATAAG 60.372 52.174 0.00 0.00 0.00 1.73
596 601 3.265489 TCCCCTCAGTCCCAAAATAAGT 58.735 45.455 0.00 0.00 0.00 2.24
597 602 3.010138 TCCCCTCAGTCCCAAAATAAGTG 59.990 47.826 0.00 0.00 0.00 3.16
598 603 3.245264 CCCCTCAGTCCCAAAATAAGTGT 60.245 47.826 0.00 0.00 0.00 3.55
599 604 4.010349 CCCTCAGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
600 605 4.263506 CCCTCAGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
601 606 5.316987 CCTCAGTCCCAAAATAAGTGTCTT 58.683 41.667 0.00 0.00 0.00 3.01
602 607 6.472887 CCTCAGTCCCAAAATAAGTGTCTTA 58.527 40.000 0.00 0.00 0.00 2.10
603 608 6.595716 CCTCAGTCCCAAAATAAGTGTCTTAG 59.404 42.308 0.00 0.00 0.00 2.18
604 609 5.938125 TCAGTCCCAAAATAAGTGTCTTAGC 59.062 40.000 0.00 0.00 0.00 3.09
605 610 5.940470 CAGTCCCAAAATAAGTGTCTTAGCT 59.060 40.000 0.00 0.00 0.00 3.32
606 611 5.940470 AGTCCCAAAATAAGTGTCTTAGCTG 59.060 40.000 0.00 0.00 0.00 4.24
607 612 5.938125 GTCCCAAAATAAGTGTCTTAGCTGA 59.062 40.000 0.00 0.00 0.00 4.26
608 613 6.430000 GTCCCAAAATAAGTGTCTTAGCTGAA 59.570 38.462 0.00 0.00 0.00 3.02
609 614 7.121315 GTCCCAAAATAAGTGTCTTAGCTGAAT 59.879 37.037 0.00 0.00 0.00 2.57
610 615 8.325787 TCCCAAAATAAGTGTCTTAGCTGAATA 58.674 33.333 0.00 0.00 0.00 1.75
611 616 8.398665 CCCAAAATAAGTGTCTTAGCTGAATAC 58.601 37.037 0.00 0.00 0.00 1.89
612 617 8.946085 CCAAAATAAGTGTCTTAGCTGAATACA 58.054 33.333 0.00 0.00 0.00 2.29
619 624 7.308435 AGTGTCTTAGCTGAATACAAATTTGC 58.692 34.615 18.12 2.19 0.00 3.68
620 625 7.175641 AGTGTCTTAGCTGAATACAAATTTGCT 59.824 33.333 18.12 9.80 38.17 3.91
621 626 7.483059 GTGTCTTAGCTGAATACAAATTTGCTC 59.517 37.037 18.12 12.27 36.88 4.26
622 627 7.391554 TGTCTTAGCTGAATACAAATTTGCTCT 59.608 33.333 18.12 2.20 36.88 4.09
623 628 8.883731 GTCTTAGCTGAATACAAATTTGCTCTA 58.116 33.333 18.12 3.88 36.88 2.43
624 629 9.102757 TCTTAGCTGAATACAAATTTGCTCTAG 57.897 33.333 18.12 10.92 36.88 2.43
625 630 9.102757 CTTAGCTGAATACAAATTTGCTCTAGA 57.897 33.333 18.12 0.00 36.88 2.43
626 631 7.551035 AGCTGAATACAAATTTGCTCTAGAG 57.449 36.000 18.12 15.85 33.04 2.43
641 646 4.312443 CTCTAGAGCTAGTACTCCCTTCG 58.688 52.174 6.86 0.00 37.39 3.79
642 647 3.710677 TCTAGAGCTAGTACTCCCTTCGT 59.289 47.826 0.00 0.00 37.39 3.85
643 648 3.369242 AGAGCTAGTACTCCCTTCGTT 57.631 47.619 0.00 0.00 37.39 3.85
644 649 3.281158 AGAGCTAGTACTCCCTTCGTTC 58.719 50.000 0.00 0.00 37.39 3.95
645 650 3.054213 AGAGCTAGTACTCCCTTCGTTCT 60.054 47.826 0.00 0.00 37.39 3.01
646 651 3.018149 AGCTAGTACTCCCTTCGTTCTG 58.982 50.000 0.00 0.00 0.00 3.02
647 652 3.015327 GCTAGTACTCCCTTCGTTCTGA 58.985 50.000 0.00 0.00 0.00 3.27
648 653 3.442977 GCTAGTACTCCCTTCGTTCTGAA 59.557 47.826 0.00 0.00 34.74 3.02
649 654 4.098196 GCTAGTACTCCCTTCGTTCTGAAT 59.902 45.833 0.00 0.00 35.63 2.57
650 655 5.394333 GCTAGTACTCCCTTCGTTCTGAATT 60.394 44.000 0.00 0.00 35.63 2.17
651 656 6.183360 GCTAGTACTCCCTTCGTTCTGAATTA 60.183 42.308 0.00 0.00 35.63 1.40
652 657 5.963594 AGTACTCCCTTCGTTCTGAATTAC 58.036 41.667 0.00 0.00 35.63 1.89
653 658 5.715753 AGTACTCCCTTCGTTCTGAATTACT 59.284 40.000 0.00 0.00 35.63 2.24
654 659 5.485209 ACTCCCTTCGTTCTGAATTACTT 57.515 39.130 0.00 0.00 35.63 2.24
655 660 5.238583 ACTCCCTTCGTTCTGAATTACTTG 58.761 41.667 0.00 0.00 35.63 3.16
656 661 5.221661 ACTCCCTTCGTTCTGAATTACTTGT 60.222 40.000 0.00 0.00 35.63 3.16
657 662 5.235516 TCCCTTCGTTCTGAATTACTTGTC 58.764 41.667 0.00 0.00 35.63 3.18
658 663 4.091509 CCCTTCGTTCTGAATTACTTGTCG 59.908 45.833 0.00 0.00 35.63 4.35
659 664 4.434330 CCTTCGTTCTGAATTACTTGTCGC 60.434 45.833 0.00 0.00 35.63 5.19
660 665 3.644823 TCGTTCTGAATTACTTGTCGCA 58.355 40.909 0.00 0.00 0.00 5.10
661 666 4.052608 TCGTTCTGAATTACTTGTCGCAA 58.947 39.130 0.00 0.00 0.00 4.85
662 667 4.149922 TCGTTCTGAATTACTTGTCGCAAG 59.850 41.667 15.16 15.16 0.00 4.01
663 668 4.084537 CGTTCTGAATTACTTGTCGCAAGT 60.085 41.667 22.53 22.53 39.48 3.16
664 669 5.118050 CGTTCTGAATTACTTGTCGCAAGTA 59.882 40.000 20.95 20.95 39.48 2.24
665 670 6.183360 CGTTCTGAATTACTTGTCGCAAGTAT 60.183 38.462 23.59 14.96 33.27 2.12
666 671 7.008901 CGTTCTGAATTACTTGTCGCAAGTATA 59.991 37.037 23.59 17.37 33.27 1.47
667 672 7.987268 TCTGAATTACTTGTCGCAAGTATAG 57.013 36.000 23.59 19.45 33.27 1.31
668 673 7.768240 TCTGAATTACTTGTCGCAAGTATAGA 58.232 34.615 23.59 20.62 33.27 1.98
669 674 8.414003 TCTGAATTACTTGTCGCAAGTATAGAT 58.586 33.333 23.59 15.77 33.27 1.98
670 675 8.352752 TGAATTACTTGTCGCAAGTATAGATG 57.647 34.615 23.59 2.90 33.27 2.90
671 676 7.979537 TGAATTACTTGTCGCAAGTATAGATGT 59.020 33.333 23.59 11.70 33.27 3.06
672 677 9.459640 GAATTACTTGTCGCAAGTATAGATGTA 57.540 33.333 23.59 13.16 33.27 2.29
673 678 9.982651 AATTACTTGTCGCAAGTATAGATGTAT 57.017 29.630 23.59 14.31 33.27 2.29
674 679 9.627395 ATTACTTGTCGCAAGTATAGATGTATC 57.373 33.333 23.59 0.00 33.27 2.24
675 680 7.278461 ACTTGTCGCAAGTATAGATGTATCT 57.722 36.000 19.21 0.00 38.75 1.98
676 681 8.392372 ACTTGTCGCAAGTATAGATGTATCTA 57.608 34.615 19.21 4.22 40.29 1.98
677 682 8.508062 ACTTGTCGCAAGTATAGATGTATCTAG 58.492 37.037 19.21 0.00 39.75 2.43
678 683 8.617290 TTGTCGCAAGTATAGATGTATCTAGA 57.383 34.615 7.57 0.00 39.75 2.43
679 684 8.794335 TGTCGCAAGTATAGATGTATCTAGAT 57.206 34.615 10.73 10.73 39.75 1.98
680 685 8.669243 TGTCGCAAGTATAGATGTATCTAGATG 58.331 37.037 15.79 0.00 39.75 2.90
681 686 8.670135 GTCGCAAGTATAGATGTATCTAGATGT 58.330 37.037 15.79 1.25 39.75 3.06
682 687 9.886132 TCGCAAGTATAGATGTATCTAGATGTA 57.114 33.333 15.79 4.44 39.75 2.29
710 715 6.155475 AGTTCTAGATACATCCACTTCTGC 57.845 41.667 0.00 0.00 0.00 4.26
711 716 4.837896 TCTAGATACATCCACTTCTGCG 57.162 45.455 0.00 0.00 0.00 5.18
712 717 4.461198 TCTAGATACATCCACTTCTGCGA 58.539 43.478 0.00 0.00 0.00 5.10
713 718 3.444703 AGATACATCCACTTCTGCGAC 57.555 47.619 0.00 0.00 0.00 5.19
714 719 2.120232 GATACATCCACTTCTGCGACG 58.880 52.381 0.00 0.00 0.00 5.12
715 720 1.170442 TACATCCACTTCTGCGACGA 58.830 50.000 0.00 0.00 0.00 4.20
716 721 0.109086 ACATCCACTTCTGCGACGAG 60.109 55.000 0.00 0.00 0.00 4.18
717 722 0.109086 CATCCACTTCTGCGACGAGT 60.109 55.000 0.00 0.00 0.00 4.18
718 723 1.132453 CATCCACTTCTGCGACGAGTA 59.868 52.381 0.00 0.00 0.00 2.59
719 724 1.241165 TCCACTTCTGCGACGAGTAA 58.759 50.000 0.00 0.00 0.00 2.24
720 725 1.816835 TCCACTTCTGCGACGAGTAAT 59.183 47.619 0.00 0.00 0.00 1.89
721 726 2.230508 TCCACTTCTGCGACGAGTAATT 59.769 45.455 0.00 0.00 0.00 1.40
722 727 2.993899 CCACTTCTGCGACGAGTAATTT 59.006 45.455 0.00 0.00 0.00 1.82
723 728 3.181530 CCACTTCTGCGACGAGTAATTTG 60.182 47.826 0.00 0.00 0.00 2.32
724 729 3.673338 CACTTCTGCGACGAGTAATTTGA 59.327 43.478 0.00 0.00 0.00 2.69
725 730 4.149922 CACTTCTGCGACGAGTAATTTGAA 59.850 41.667 0.00 0.00 0.00 2.69
726 731 4.748102 ACTTCTGCGACGAGTAATTTGAAA 59.252 37.500 0.00 0.00 0.00 2.69
727 732 4.640805 TCTGCGACGAGTAATTTGAAAC 57.359 40.909 0.00 0.00 0.00 2.78
728 733 3.120616 TCTGCGACGAGTAATTTGAAACG 59.879 43.478 0.00 0.00 0.00 3.60
729 734 2.156117 TGCGACGAGTAATTTGAAACGG 59.844 45.455 0.00 0.00 0.00 4.44
730 735 2.409378 GCGACGAGTAATTTGAAACGGA 59.591 45.455 0.00 0.00 0.00 4.69
731 736 3.481467 GCGACGAGTAATTTGAAACGGAG 60.481 47.826 0.00 0.00 0.00 4.63
732 737 3.916172 CGACGAGTAATTTGAAACGGAGA 59.084 43.478 0.00 0.00 0.00 3.71
733 738 4.030306 CGACGAGTAATTTGAAACGGAGAG 59.970 45.833 0.00 0.00 0.00 3.20
734 739 5.130292 ACGAGTAATTTGAAACGGAGAGA 57.870 39.130 0.00 0.00 0.00 3.10
735 740 5.162075 ACGAGTAATTTGAAACGGAGAGAG 58.838 41.667 0.00 0.00 0.00 3.20
736 741 5.162075 CGAGTAATTTGAAACGGAGAGAGT 58.838 41.667 0.00 0.00 0.00 3.24
737 742 6.072286 ACGAGTAATTTGAAACGGAGAGAGTA 60.072 38.462 0.00 0.00 0.00 2.59
738 743 6.250951 CGAGTAATTTGAAACGGAGAGAGTAC 59.749 42.308 0.00 0.00 0.00 2.73
739 744 6.989659 AGTAATTTGAAACGGAGAGAGTACA 58.010 36.000 0.00 0.00 0.00 2.90
740 745 7.439381 AGTAATTTGAAACGGAGAGAGTACAA 58.561 34.615 0.00 0.00 0.00 2.41
741 746 7.929785 AGTAATTTGAAACGGAGAGAGTACAAA 59.070 33.333 0.00 0.00 34.91 2.83
742 747 6.787085 ATTTGAAACGGAGAGAGTACAAAG 57.213 37.500 0.00 0.00 34.41 2.77
743 748 4.931661 TGAAACGGAGAGAGTACAAAGT 57.068 40.909 0.00 0.00 0.00 2.66
744 749 5.272283 TGAAACGGAGAGAGTACAAAGTT 57.728 39.130 0.00 0.00 0.00 2.66
745 750 5.047847 TGAAACGGAGAGAGTACAAAGTTG 58.952 41.667 0.00 0.00 0.00 3.16
746 751 4.931661 AACGGAGAGAGTACAAAGTTGA 57.068 40.909 0.00 0.00 0.00 3.18
747 752 4.506886 ACGGAGAGAGTACAAAGTTGAG 57.493 45.455 0.00 0.00 0.00 3.02
748 753 4.142790 ACGGAGAGAGTACAAAGTTGAGA 58.857 43.478 0.00 0.00 0.00 3.27
749 754 4.023021 ACGGAGAGAGTACAAAGTTGAGAC 60.023 45.833 0.00 0.00 0.00 3.36
750 755 4.023107 CGGAGAGAGTACAAAGTTGAGACA 60.023 45.833 0.00 0.00 0.00 3.41
751 756 5.224135 GGAGAGAGTACAAAGTTGAGACAC 58.776 45.833 0.00 0.00 0.00 3.67
752 757 5.010213 GGAGAGAGTACAAAGTTGAGACACT 59.990 44.000 0.00 0.19 0.00 3.55
753 758 6.461788 GGAGAGAGTACAAAGTTGAGACACTT 60.462 42.308 0.00 0.00 38.74 3.16
754 759 6.276847 AGAGAGTACAAAGTTGAGACACTTG 58.723 40.000 0.00 0.00 37.07 3.16
755 760 5.978814 AGAGTACAAAGTTGAGACACTTGT 58.021 37.500 0.00 0.00 37.07 3.16
756 761 6.407202 AGAGTACAAAGTTGAGACACTTGTT 58.593 36.000 0.00 0.00 37.07 2.83
757 762 6.879458 AGAGTACAAAGTTGAGACACTTGTTT 59.121 34.615 0.00 0.00 37.07 2.83
758 763 7.390718 AGAGTACAAAGTTGAGACACTTGTTTT 59.609 33.333 0.00 0.00 37.07 2.43
759 764 7.305474 AGTACAAAGTTGAGACACTTGTTTTG 58.695 34.615 0.00 2.02 37.07 2.44
760 765 5.469479 ACAAAGTTGAGACACTTGTTTTGG 58.531 37.500 0.00 0.00 37.07 3.28
761 766 4.718940 AAGTTGAGACACTTGTTTTGGG 57.281 40.909 0.00 0.00 35.57 4.12
762 767 3.963129 AGTTGAGACACTTGTTTTGGGA 58.037 40.909 0.00 0.00 0.00 4.37
763 768 3.694566 AGTTGAGACACTTGTTTTGGGAC 59.305 43.478 0.00 0.00 0.00 4.46
764 769 2.285083 TGAGACACTTGTTTTGGGACG 58.715 47.619 0.00 0.00 0.00 4.79
765 770 1.602377 GAGACACTTGTTTTGGGACGG 59.398 52.381 0.00 0.00 0.00 4.79
766 771 1.210967 AGACACTTGTTTTGGGACGGA 59.789 47.619 0.00 0.00 0.00 4.69
767 772 1.602377 GACACTTGTTTTGGGACGGAG 59.398 52.381 0.00 0.00 0.00 4.63
768 773 0.951558 CACTTGTTTTGGGACGGAGG 59.048 55.000 0.00 0.00 0.00 4.30
769 774 0.179001 ACTTGTTTTGGGACGGAGGG 60.179 55.000 0.00 0.00 0.00 4.30
770 775 0.109723 CTTGTTTTGGGACGGAGGGA 59.890 55.000 0.00 0.00 0.00 4.20
771 776 0.109723 TTGTTTTGGGACGGAGGGAG 59.890 55.000 0.00 0.00 0.00 4.30
1041 2200 1.648467 GCGTCCATGAACAAGGCCTC 61.648 60.000 5.23 0.00 0.00 4.70
1043 2202 1.026718 GTCCATGAACAAGGCCTCCG 61.027 60.000 5.23 2.40 0.00 4.63
1223 2382 3.829044 CGGCGTGTCCCGGACATA 61.829 66.667 23.14 0.00 44.63 2.29
1226 2385 1.594293 GCGTGTCCCGGACATATGG 60.594 63.158 23.14 13.49 44.63 2.74
1233 2392 2.253758 CCGGACATATGGCGGCAAG 61.254 63.158 18.31 11.90 0.00 4.01
1261 2420 0.674895 GCGGATCAAGCACTCCAAGT 60.675 55.000 7.43 0.00 34.19 3.16
1366 2525 2.652530 GGGCCGTGACGAACTACA 59.347 61.111 6.54 0.00 0.00 2.74
1373 2532 1.455786 CGTGACGAACTACAAGCAAGG 59.544 52.381 0.00 0.00 0.00 3.61
1724 2883 2.273179 CGTCCGTGGACCTCCTCAA 61.273 63.158 13.24 0.00 41.76 3.02
1779 2944 1.918253 GGACAGCATCATCCCAGGT 59.082 57.895 0.00 0.00 0.00 4.00
1864 3032 2.456577 TCCTCATCGACATGGACTTCA 58.543 47.619 0.00 0.00 0.00 3.02
1865 3033 2.831526 TCCTCATCGACATGGACTTCAA 59.168 45.455 0.00 0.00 0.00 2.69
1928 3099 3.266636 TGCTCTGTTTTTCTGTTCGTCA 58.733 40.909 0.00 0.00 0.00 4.35
1939 3110 3.395639 TCTGTTCGTCAGGCGTAAAAAT 58.604 40.909 0.00 0.00 43.76 1.82
1963 3134 1.356527 AACACGCGACGAATTAGGGC 61.357 55.000 15.93 0.00 0.00 5.19
1976 3147 2.022718 TTAGGGCCAATTTTGCTGGT 57.977 45.000 6.18 0.00 36.24 4.00
2002 3174 3.928727 CTGTTGCACAGGTGATCAATT 57.071 42.857 0.00 0.00 42.35 2.32
2004 3176 5.571784 CTGTTGCACAGGTGATCAATTAT 57.428 39.130 0.00 0.00 42.35 1.28
2005 3177 5.565592 TGTTGCACAGGTGATCAATTATC 57.434 39.130 0.00 0.00 34.93 1.75
2006 3178 5.008980 TGTTGCACAGGTGATCAATTATCA 58.991 37.500 0.00 0.00 42.48 2.15
2007 3179 5.476254 TGTTGCACAGGTGATCAATTATCAA 59.524 36.000 0.00 0.00 46.17 2.57
2108 3293 3.369546 AATGTGCAAGAAAAGGGTTCG 57.630 42.857 0.00 0.00 0.00 3.95
2195 3430 8.733092 ACATATGAATCTAGAGGAGAATTGGA 57.267 34.615 10.38 0.00 37.85 3.53
2264 3506 6.095680 AGATACTAATAAACTGGGGCCCATA 58.904 40.000 28.95 16.88 30.82 2.74
2305 3558 4.110482 CAACGCTCCAACCTAGTATGTAC 58.890 47.826 0.00 0.00 0.00 2.90
2306 3559 3.629087 ACGCTCCAACCTAGTATGTACT 58.371 45.455 0.00 0.00 40.24 2.73
2308 3561 5.195940 ACGCTCCAACCTAGTATGTACTTA 58.804 41.667 0.00 0.00 37.73 2.24
2309 3562 5.067023 ACGCTCCAACCTAGTATGTACTTAC 59.933 44.000 10.22 10.22 37.73 2.34
2311 3564 6.484643 CGCTCCAACCTAGTATGTACTTACTA 59.515 42.308 21.19 21.19 37.73 1.82
2312 3565 7.307870 CGCTCCAACCTAGTATGTACTTACTAG 60.308 44.444 30.98 30.98 45.94 2.57
2357 3611 9.353999 GATTTAATTTAGTGCTACAGGGTTTTG 57.646 33.333 0.00 0.00 0.00 2.44
2554 3863 4.508551 TGGGTGACAGATAAGCATTGAT 57.491 40.909 0.00 0.00 0.00 2.57
2636 3994 3.947910 AATCTGATGGCTGTTGGTTTG 57.052 42.857 0.00 0.00 0.00 2.93
2638 3996 1.955778 TCTGATGGCTGTTGGTTTGTG 59.044 47.619 0.00 0.00 0.00 3.33
2650 4008 2.027385 TGGTTTGTGTGTGCATGCTTA 58.973 42.857 20.33 4.68 0.00 3.09
2664 4022 4.142403 TGCATGCTTATAACAGCCTTGAAC 60.142 41.667 20.33 0.00 39.25 3.18
2665 4023 4.142403 GCATGCTTATAACAGCCTTGAACA 60.142 41.667 11.37 0.00 39.25 3.18
2666 4024 5.575957 CATGCTTATAACAGCCTTGAACAG 58.424 41.667 0.00 0.00 39.25 3.16
2667 4025 4.905429 TGCTTATAACAGCCTTGAACAGA 58.095 39.130 0.00 0.00 39.25 3.41
2668 4026 4.937620 TGCTTATAACAGCCTTGAACAGAG 59.062 41.667 0.00 0.00 39.25 3.35
2717 4085 7.121974 AGTCAGAATTCAGATACAAACAACG 57.878 36.000 8.44 0.00 0.00 4.10
2845 4214 2.552155 GGACCTGATGTGTGCACCTTTA 60.552 50.000 15.69 0.00 0.00 1.85
2848 4217 4.917385 ACCTGATGTGTGCACCTTTATTA 58.083 39.130 15.69 0.00 0.00 0.98
2851 4220 5.221106 CCTGATGTGTGCACCTTTATTATGG 60.221 44.000 15.69 2.11 0.00 2.74
2852 4221 5.504853 TGATGTGTGCACCTTTATTATGGA 58.495 37.500 15.69 0.00 0.00 3.41
2853 4222 5.356751 TGATGTGTGCACCTTTATTATGGAC 59.643 40.000 15.69 1.26 35.45 4.02
2854 4223 4.657013 TGTGTGCACCTTTATTATGGACA 58.343 39.130 15.69 4.18 41.64 4.02
2855 4224 5.260424 TGTGTGCACCTTTATTATGGACAT 58.740 37.500 15.69 0.00 44.84 3.06
2856 4225 5.356751 TGTGTGCACCTTTATTATGGACATC 59.643 40.000 15.69 0.00 44.84 3.06
2857 4226 5.590259 GTGTGCACCTTTATTATGGACATCT 59.410 40.000 15.69 0.00 44.84 2.90
2858 4227 6.765989 GTGTGCACCTTTATTATGGACATCTA 59.234 38.462 15.69 0.00 44.84 1.98
2859 4228 6.765989 TGTGCACCTTTATTATGGACATCTAC 59.234 38.462 15.69 0.00 39.41 2.59
2860 4229 6.765989 GTGCACCTTTATTATGGACATCTACA 59.234 38.462 5.22 0.00 35.04 2.74
2861 4230 7.282224 GTGCACCTTTATTATGGACATCTACAA 59.718 37.037 5.22 0.00 35.04 2.41
2862 4231 7.831690 TGCACCTTTATTATGGACATCTACAAA 59.168 33.333 0.00 0.00 0.00 2.83
2863 4232 8.129211 GCACCTTTATTATGGACATCTACAAAC 58.871 37.037 0.00 0.00 0.00 2.93
2864 4233 9.173021 CACCTTTATTATGGACATCTACAAACA 57.827 33.333 0.00 0.00 0.00 2.83
2865 4234 9.920946 ACCTTTATTATGGACATCTACAAACAT 57.079 29.630 0.00 0.00 0.00 2.71
2871 4240 5.627499 TGGACATCTACAAACATTTCTGC 57.373 39.130 0.00 0.00 0.00 4.26
2872 4241 5.316167 TGGACATCTACAAACATTTCTGCT 58.684 37.500 0.00 0.00 0.00 4.24
2873 4242 5.181811 TGGACATCTACAAACATTTCTGCTG 59.818 40.000 0.00 0.00 0.00 4.41
2874 4243 5.182001 GGACATCTACAAACATTTCTGCTGT 59.818 40.000 0.00 0.00 0.00 4.40
2875 4244 6.005583 ACATCTACAAACATTTCTGCTGTG 57.994 37.500 0.00 0.00 0.00 3.66
2876 4245 5.764686 ACATCTACAAACATTTCTGCTGTGA 59.235 36.000 0.00 0.00 0.00 3.58
2877 4246 6.432162 ACATCTACAAACATTTCTGCTGTGAT 59.568 34.615 0.00 0.00 0.00 3.06
2878 4247 6.882610 TCTACAAACATTTCTGCTGTGATT 57.117 33.333 0.00 0.00 0.00 2.57
2879 4248 7.275888 TCTACAAACATTTCTGCTGTGATTT 57.724 32.000 0.00 0.00 0.00 2.17
2880 4249 7.140705 TCTACAAACATTTCTGCTGTGATTTG 58.859 34.615 0.00 0.00 0.00 2.32
2881 4250 4.508861 ACAAACATTTCTGCTGTGATTTGC 59.491 37.500 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.068127 GGGCACATGAATGGATTCTGC 59.932 52.381 0.00 0.00 37.67 4.26
21 22 2.242965 TGAGGGCACATGAATGGATTCT 59.757 45.455 0.00 0.00 37.67 2.40
51 52 7.868415 CGTTCTTATATTTTAGGACAGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
52 53 7.343833 ACGTTCTTATATTTTAGGACAGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
53 54 7.498443 ACGTTCTTATATTTTAGGACAGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
72 73 9.431887 ACATTAACATAGTGTCAAATACGTTCT 57.568 29.630 0.00 0.00 0.00 3.01
101 102 9.855021 CTTCGTCCCAAAATATAAGAATGTTTT 57.145 29.630 0.00 0.00 37.01 2.43
102 103 8.466798 CCTTCGTCCCAAAATATAAGAATGTTT 58.533 33.333 0.00 0.00 0.00 2.83
103 104 7.068226 CCCTTCGTCCCAAAATATAAGAATGTT 59.932 37.037 0.00 0.00 0.00 2.71
104 105 6.546034 CCCTTCGTCCCAAAATATAAGAATGT 59.454 38.462 0.00 0.00 0.00 2.71
105 106 6.770785 TCCCTTCGTCCCAAAATATAAGAATG 59.229 38.462 0.00 0.00 0.00 2.67
106 107 6.906848 TCCCTTCGTCCCAAAATATAAGAAT 58.093 36.000 0.00 0.00 0.00 2.40
107 108 6.069847 ACTCCCTTCGTCCCAAAATATAAGAA 60.070 38.462 0.00 0.00 0.00 2.52
108 109 5.427481 ACTCCCTTCGTCCCAAAATATAAGA 59.573 40.000 0.00 0.00 0.00 2.10
109 110 5.681639 ACTCCCTTCGTCCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
110 111 5.703730 ACTCCCTTCGTCCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
111 112 5.901276 ACTACTCCCTTCGTCCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
112 113 4.720273 ACTACTCCCTTCGTCCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
113 114 4.098894 ACTACTCCCTTCGTCCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
114 115 2.910977 ACTACTCCCTTCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
115 116 2.332117 ACTACTCCCTTCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
116 117 2.019807 ACTACTCCCTTCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
117 118 2.905415 TACTACTCCCTTCGTCCCAA 57.095 50.000 0.00 0.00 0.00 4.12
118 119 2.905415 TTACTACTCCCTTCGTCCCA 57.095 50.000 0.00 0.00 0.00 4.37
119 120 3.564264 AGATTACTACTCCCTTCGTCCC 58.436 50.000 0.00 0.00 0.00 4.46
120 121 4.205587 TGAGATTACTACTCCCTTCGTCC 58.794 47.826 0.00 0.00 33.95 4.79
121 122 5.125097 TGTTGAGATTACTACTCCCTTCGTC 59.875 44.000 0.00 0.00 33.95 4.20
122 123 5.014858 TGTTGAGATTACTACTCCCTTCGT 58.985 41.667 0.00 0.00 33.95 3.85
123 124 5.341617 GTGTTGAGATTACTACTCCCTTCG 58.658 45.833 0.00 0.00 33.95 3.79
124 125 5.125097 TCGTGTTGAGATTACTACTCCCTTC 59.875 44.000 0.00 0.00 33.95 3.46
125 126 5.014858 TCGTGTTGAGATTACTACTCCCTT 58.985 41.667 0.00 0.00 33.95 3.95
126 127 4.597004 TCGTGTTGAGATTACTACTCCCT 58.403 43.478 0.00 0.00 33.95 4.20
127 128 4.978083 TCGTGTTGAGATTACTACTCCC 57.022 45.455 0.00 0.00 33.95 4.30
146 147 1.645034 ACACATGGATTCGAAGCTCG 58.355 50.000 13.83 4.67 42.10 5.03
152 153 5.943416 ACAGGAAATAAACACATGGATTCGA 59.057 36.000 0.00 0.00 0.00 3.71
153 154 6.029607 CACAGGAAATAAACACATGGATTCG 58.970 40.000 0.00 0.00 0.00 3.34
154 155 6.924111 ACACAGGAAATAAACACATGGATTC 58.076 36.000 0.00 0.00 0.00 2.52
158 159 6.976088 TGTTACACAGGAAATAAACACATGG 58.024 36.000 0.00 0.00 0.00 3.66
184 185 0.178992 TGAGAGGTGGGTGCCTTTTG 60.179 55.000 0.00 0.00 39.34 2.44
190 192 4.042187 AGGAATATTATGAGAGGTGGGTGC 59.958 45.833 0.00 0.00 0.00 5.01
195 197 9.784531 ATAAACACAGGAATATTATGAGAGGTG 57.215 33.333 7.05 0.00 0.00 4.00
211 213 4.941263 TCCGAATCCTTGAATAAACACAGG 59.059 41.667 0.00 0.00 0.00 4.00
213 215 7.335627 ACTATCCGAATCCTTGAATAAACACA 58.664 34.615 0.00 0.00 0.00 3.72
220 222 4.636249 GCTGACTATCCGAATCCTTGAAT 58.364 43.478 0.00 0.00 0.00 2.57
229 232 0.806868 ACGTTCGCTGACTATCCGAA 59.193 50.000 0.00 0.00 38.49 4.30
230 233 0.806868 AACGTTCGCTGACTATCCGA 59.193 50.000 0.00 0.00 0.00 4.55
241 244 2.247637 GCCTGGAAATTTAACGTTCGC 58.752 47.619 2.82 0.00 0.00 4.70
242 245 3.546002 TGCCTGGAAATTTAACGTTCG 57.454 42.857 2.82 0.00 0.00 3.95
246 249 2.094286 TGCCATGCCTGGAAATTTAACG 60.094 45.455 12.80 0.00 46.37 3.18
251 254 2.572556 TGATTTGCCATGCCTGGAAATT 59.427 40.909 12.80 3.95 46.37 1.82
257 260 2.459060 TGTTTGATTTGCCATGCCTG 57.541 45.000 0.00 0.00 0.00 4.85
286 289 1.138069 TCCTCAGCGAACACAACTTGA 59.862 47.619 0.00 0.00 0.00 3.02
293 296 0.955428 TTGCCATCCTCAGCGAACAC 60.955 55.000 0.00 0.00 0.00 3.32
301 304 2.507484 CAAGTGAACTTGCCATCCTCA 58.493 47.619 10.08 0.00 45.59 3.86
318 321 2.159572 CGGGTTTTCAATACTCGCCAAG 60.160 50.000 0.00 0.00 32.13 3.61
364 367 0.944386 AGTTTGCAAGCACGTCGATT 59.056 45.000 16.04 0.00 0.00 3.34
367 370 2.376915 TTTAGTTTGCAAGCACGTCG 57.623 45.000 16.04 0.00 0.00 5.12
379 382 4.215613 GCAGGAGGACGACAAATTTAGTTT 59.784 41.667 0.00 0.00 0.00 2.66
380 383 3.751698 GCAGGAGGACGACAAATTTAGTT 59.248 43.478 0.00 0.00 0.00 2.24
381 384 3.335579 GCAGGAGGACGACAAATTTAGT 58.664 45.455 0.00 0.00 0.00 2.24
382 385 2.678336 GGCAGGAGGACGACAAATTTAG 59.322 50.000 0.00 0.00 0.00 1.85
383 386 2.039216 TGGCAGGAGGACGACAAATTTA 59.961 45.455 0.00 0.00 0.00 1.40
384 387 1.202879 TGGCAGGAGGACGACAAATTT 60.203 47.619 0.00 0.00 0.00 1.82
385 388 0.400213 TGGCAGGAGGACGACAAATT 59.600 50.000 0.00 0.00 0.00 1.82
386 389 0.620556 ATGGCAGGAGGACGACAAAT 59.379 50.000 0.00 0.00 0.00 2.32
387 390 0.321564 CATGGCAGGAGGACGACAAA 60.322 55.000 0.00 0.00 0.00 2.83
392 395 1.470098 CTTTTTCATGGCAGGAGGACG 59.530 52.381 0.83 0.00 0.00 4.79
399 402 4.796038 ACAGGAATCTTTTTCATGGCAG 57.204 40.909 5.19 0.00 34.84 4.85
430 433 9.896263 AATAAAAAGGCTAAAAATCGACGTTAA 57.104 25.926 0.00 0.00 0.00 2.01
478 482 6.564686 GCATGATTAGATGTCGGTGTGTAATG 60.565 42.308 0.00 0.00 0.00 1.90
486 490 5.009010 GGAAAATGCATGATTAGATGTCGGT 59.991 40.000 0.00 0.00 0.00 4.69
487 491 5.455392 GGAAAATGCATGATTAGATGTCGG 58.545 41.667 0.00 0.00 0.00 4.79
488 492 5.240183 AGGGAAAATGCATGATTAGATGTCG 59.760 40.000 0.00 0.00 0.00 4.35
489 493 6.567321 CGAGGGAAAATGCATGATTAGATGTC 60.567 42.308 0.00 0.00 0.00 3.06
491 495 5.335426 CCGAGGGAAAATGCATGATTAGATG 60.335 44.000 0.00 0.00 0.00 2.90
492 496 4.763793 CCGAGGGAAAATGCATGATTAGAT 59.236 41.667 0.00 0.00 0.00 1.98
493 497 4.136796 CCGAGGGAAAATGCATGATTAGA 58.863 43.478 0.00 0.00 0.00 2.10
538 542 3.887621 TCGGAATGGTTACCTTGAGAG 57.112 47.619 2.07 0.00 0.00 3.20
539 543 4.627284 TTTCGGAATGGTTACCTTGAGA 57.373 40.909 2.07 0.00 0.00 3.27
564 569 1.007359 ACTGAGGGGAGGGAGTAGTTC 59.993 57.143 0.00 0.00 0.00 3.01
566 571 0.632294 GACTGAGGGGAGGGAGTAGT 59.368 60.000 0.00 0.00 0.00 2.73
567 572 0.105913 GGACTGAGGGGAGGGAGTAG 60.106 65.000 0.00 0.00 0.00 2.57
568 573 1.591280 GGGACTGAGGGGAGGGAGTA 61.591 65.000 0.00 0.00 0.00 2.59
569 574 2.781406 GGACTGAGGGGAGGGAGT 59.219 66.667 0.00 0.00 0.00 3.85
570 575 2.041405 GGGACTGAGGGGAGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
571 576 2.056099 TTTGGGACTGAGGGGAGGGA 62.056 60.000 0.00 0.00 0.00 4.20
572 577 1.140134 TTTTGGGACTGAGGGGAGGG 61.140 60.000 0.00 0.00 0.00 4.30
573 578 1.002857 ATTTTGGGACTGAGGGGAGG 58.997 55.000 0.00 0.00 0.00 4.30
574 579 3.267031 ACTTATTTTGGGACTGAGGGGAG 59.733 47.826 0.00 0.00 0.00 4.30
575 580 3.010138 CACTTATTTTGGGACTGAGGGGA 59.990 47.826 0.00 0.00 0.00 4.81
576 581 3.245264 ACACTTATTTTGGGACTGAGGGG 60.245 47.826 0.00 0.00 0.00 4.79
577 582 4.010349 GACACTTATTTTGGGACTGAGGG 58.990 47.826 0.00 0.00 0.00 4.30
578 583 4.911390 AGACACTTATTTTGGGACTGAGG 58.089 43.478 0.00 0.00 0.00 3.86
579 584 6.092807 GCTAAGACACTTATTTTGGGACTGAG 59.907 42.308 0.00 0.00 0.00 3.35
580 585 5.938125 GCTAAGACACTTATTTTGGGACTGA 59.062 40.000 0.00 0.00 0.00 3.41
581 586 5.940470 AGCTAAGACACTTATTTTGGGACTG 59.060 40.000 0.00 0.00 0.00 3.51
582 587 5.940470 CAGCTAAGACACTTATTTTGGGACT 59.060 40.000 0.00 0.00 0.00 3.85
583 588 5.938125 TCAGCTAAGACACTTATTTTGGGAC 59.062 40.000 0.00 0.00 0.00 4.46
584 589 6.121776 TCAGCTAAGACACTTATTTTGGGA 57.878 37.500 0.00 0.00 0.00 4.37
585 590 6.817765 TTCAGCTAAGACACTTATTTTGGG 57.182 37.500 0.00 0.00 0.00 4.12
586 591 8.946085 TGTATTCAGCTAAGACACTTATTTTGG 58.054 33.333 0.00 0.00 34.44 3.28
593 598 7.809806 GCAAATTTGTATTCAGCTAAGACACTT 59.190 33.333 19.03 0.00 38.96 3.16
594 599 7.175641 AGCAAATTTGTATTCAGCTAAGACACT 59.824 33.333 19.03 0.00 38.96 3.55
595 600 7.308435 AGCAAATTTGTATTCAGCTAAGACAC 58.692 34.615 19.03 0.00 38.96 3.67
596 601 7.391554 AGAGCAAATTTGTATTCAGCTAAGACA 59.608 33.333 19.03 0.00 37.52 3.41
597 602 7.756558 AGAGCAAATTTGTATTCAGCTAAGAC 58.243 34.615 19.03 0.00 36.05 3.01
598 603 7.928307 AGAGCAAATTTGTATTCAGCTAAGA 57.072 32.000 19.03 0.00 36.05 2.10
599 604 9.102757 TCTAGAGCAAATTTGTATTCAGCTAAG 57.897 33.333 19.03 9.16 36.05 2.18
600 605 9.102757 CTCTAGAGCAAATTTGTATTCAGCTAA 57.897 33.333 19.03 0.67 36.05 3.09
601 606 8.654230 CTCTAGAGCAAATTTGTATTCAGCTA 57.346 34.615 19.03 9.29 36.05 3.32
602 607 7.551035 CTCTAGAGCAAATTTGTATTCAGCT 57.449 36.000 19.03 8.23 37.58 4.24
619 624 4.202284 ACGAAGGGAGTACTAGCTCTAGAG 60.202 50.000 15.85 15.85 36.97 2.43
620 625 3.710677 ACGAAGGGAGTACTAGCTCTAGA 59.289 47.826 10.63 0.00 36.97 2.43
621 626 4.075963 ACGAAGGGAGTACTAGCTCTAG 57.924 50.000 0.00 2.55 39.04 2.43
622 627 4.163839 AGAACGAAGGGAGTACTAGCTCTA 59.836 45.833 0.00 0.00 35.89 2.43
623 628 3.054213 AGAACGAAGGGAGTACTAGCTCT 60.054 47.826 0.00 0.00 35.89 4.09
624 629 3.065648 CAGAACGAAGGGAGTACTAGCTC 59.934 52.174 0.00 0.00 34.89 4.09
625 630 3.018149 CAGAACGAAGGGAGTACTAGCT 58.982 50.000 0.00 0.00 0.00 3.32
626 631 3.015327 TCAGAACGAAGGGAGTACTAGC 58.985 50.000 0.00 0.00 0.00 3.42
627 632 5.838531 ATTCAGAACGAAGGGAGTACTAG 57.161 43.478 0.00 0.00 36.95 2.57
628 633 6.888632 AGTAATTCAGAACGAAGGGAGTACTA 59.111 38.462 0.00 0.00 36.95 1.82
629 634 5.715753 AGTAATTCAGAACGAAGGGAGTACT 59.284 40.000 0.00 0.00 36.95 2.73
630 635 5.963594 AGTAATTCAGAACGAAGGGAGTAC 58.036 41.667 0.00 0.00 36.95 2.73
631 636 6.014840 ACAAGTAATTCAGAACGAAGGGAGTA 60.015 38.462 0.00 0.00 36.95 2.59
632 637 5.221661 ACAAGTAATTCAGAACGAAGGGAGT 60.222 40.000 0.00 0.00 36.95 3.85
633 638 5.238583 ACAAGTAATTCAGAACGAAGGGAG 58.761 41.667 0.00 0.00 36.95 4.30
634 639 5.223449 ACAAGTAATTCAGAACGAAGGGA 57.777 39.130 0.00 0.00 36.95 4.20
635 640 4.091509 CGACAAGTAATTCAGAACGAAGGG 59.908 45.833 0.00 0.00 36.95 3.95
636 641 4.434330 GCGACAAGTAATTCAGAACGAAGG 60.434 45.833 0.00 0.00 36.95 3.46
637 642 4.149922 TGCGACAAGTAATTCAGAACGAAG 59.850 41.667 0.00 0.00 36.95 3.79
638 643 4.052608 TGCGACAAGTAATTCAGAACGAA 58.947 39.130 0.00 0.00 38.22 3.85
639 644 3.644823 TGCGACAAGTAATTCAGAACGA 58.355 40.909 0.00 0.00 0.00 3.85
640 645 4.084537 ACTTGCGACAAGTAATTCAGAACG 60.085 41.667 19.21 0.00 0.00 3.95
641 646 5.344207 ACTTGCGACAAGTAATTCAGAAC 57.656 39.130 19.21 0.00 0.00 3.01
642 647 8.248253 TCTATACTTGCGACAAGTAATTCAGAA 58.752 33.333 25.44 11.09 36.45 3.02
643 648 7.768240 TCTATACTTGCGACAAGTAATTCAGA 58.232 34.615 25.44 21.58 36.45 3.27
644 649 7.987268 TCTATACTTGCGACAAGTAATTCAG 57.013 36.000 25.44 20.42 36.45 3.02
645 650 7.979537 ACATCTATACTTGCGACAAGTAATTCA 59.020 33.333 25.44 15.42 36.45 2.57
646 651 8.354011 ACATCTATACTTGCGACAAGTAATTC 57.646 34.615 25.44 0.00 36.45 2.17
647 652 9.982651 ATACATCTATACTTGCGACAAGTAATT 57.017 29.630 25.44 17.22 36.45 1.40
648 653 9.627395 GATACATCTATACTTGCGACAAGTAAT 57.373 33.333 25.44 16.91 36.45 1.89
649 654 8.847196 AGATACATCTATACTTGCGACAAGTAA 58.153 33.333 25.44 15.64 36.45 2.24
650 655 8.392372 AGATACATCTATACTTGCGACAAGTA 57.608 34.615 24.52 24.52 37.18 2.24
651 656 7.278461 AGATACATCTATACTTGCGACAAGT 57.722 36.000 22.53 22.53 34.85 3.16
652 657 8.722394 TCTAGATACATCTATACTTGCGACAAG 58.278 37.037 15.16 15.16 38.60 3.16
653 658 8.617290 TCTAGATACATCTATACTTGCGACAA 57.383 34.615 0.00 0.00 38.60 3.18
654 659 8.669243 CATCTAGATACATCTATACTTGCGACA 58.331 37.037 4.54 0.00 38.60 4.35
655 660 8.670135 ACATCTAGATACATCTATACTTGCGAC 58.330 37.037 4.54 0.00 38.60 5.19
656 661 8.794335 ACATCTAGATACATCTATACTTGCGA 57.206 34.615 4.54 0.00 38.60 5.10
684 689 8.198109 GCAGAAGTGGATGTATCTAGAACTAAA 58.802 37.037 0.00 0.00 0.00 1.85
685 690 7.468768 CGCAGAAGTGGATGTATCTAGAACTAA 60.469 40.741 0.00 0.00 0.00 2.24
686 691 6.017026 CGCAGAAGTGGATGTATCTAGAACTA 60.017 42.308 0.00 0.00 0.00 2.24
687 692 5.221145 CGCAGAAGTGGATGTATCTAGAACT 60.221 44.000 0.00 0.00 0.00 3.01
688 693 4.979197 CGCAGAAGTGGATGTATCTAGAAC 59.021 45.833 0.00 0.00 0.00 3.01
689 694 4.887655 TCGCAGAAGTGGATGTATCTAGAA 59.112 41.667 0.00 0.00 0.00 2.10
690 695 4.276183 GTCGCAGAAGTGGATGTATCTAGA 59.724 45.833 0.00 0.00 39.69 2.43
691 696 4.541779 GTCGCAGAAGTGGATGTATCTAG 58.458 47.826 0.00 0.00 39.69 2.43
692 697 3.003378 CGTCGCAGAAGTGGATGTATCTA 59.997 47.826 0.00 0.00 39.69 1.98
693 698 2.223595 CGTCGCAGAAGTGGATGTATCT 60.224 50.000 0.00 0.00 39.69 1.98
694 699 2.120232 CGTCGCAGAAGTGGATGTATC 58.880 52.381 0.00 0.00 39.69 2.24
695 700 1.749063 TCGTCGCAGAAGTGGATGTAT 59.251 47.619 0.00 0.00 39.69 2.29
696 701 1.132453 CTCGTCGCAGAAGTGGATGTA 59.868 52.381 0.00 0.00 39.69 2.29
697 702 0.109086 CTCGTCGCAGAAGTGGATGT 60.109 55.000 0.00 0.00 39.69 3.06
698 703 0.109086 ACTCGTCGCAGAAGTGGATG 60.109 55.000 0.00 0.00 39.69 3.51
699 704 1.460504 TACTCGTCGCAGAAGTGGAT 58.539 50.000 0.00 0.00 39.69 3.41
700 705 1.241165 TTACTCGTCGCAGAAGTGGA 58.759 50.000 0.00 0.00 39.69 4.02
701 706 2.279582 ATTACTCGTCGCAGAAGTGG 57.720 50.000 0.00 0.00 39.69 4.00
702 707 3.673338 TCAAATTACTCGTCGCAGAAGTG 59.327 43.478 0.00 0.00 39.69 3.16
703 708 3.909430 TCAAATTACTCGTCGCAGAAGT 58.091 40.909 0.00 0.00 39.69 3.01
704 709 4.903638 TTCAAATTACTCGTCGCAGAAG 57.096 40.909 0.00 0.00 39.69 2.85
705 710 4.375606 CGTTTCAAATTACTCGTCGCAGAA 60.376 41.667 0.00 0.00 39.69 3.02
706 711 3.120616 CGTTTCAAATTACTCGTCGCAGA 59.879 43.478 0.00 0.00 0.00 4.26
707 712 3.395671 CGTTTCAAATTACTCGTCGCAG 58.604 45.455 0.00 0.00 0.00 5.18
708 713 2.156117 CCGTTTCAAATTACTCGTCGCA 59.844 45.455 0.00 0.00 0.00 5.10
709 714 2.409378 TCCGTTTCAAATTACTCGTCGC 59.591 45.455 0.00 0.00 0.00 5.19
710 715 3.916172 TCTCCGTTTCAAATTACTCGTCG 59.084 43.478 0.00 0.00 0.00 5.12
711 716 5.159209 TCTCTCCGTTTCAAATTACTCGTC 58.841 41.667 0.00 0.00 0.00 4.20
712 717 5.130292 TCTCTCCGTTTCAAATTACTCGT 57.870 39.130 0.00 0.00 0.00 4.18
713 718 5.162075 ACTCTCTCCGTTTCAAATTACTCG 58.838 41.667 0.00 0.00 0.00 4.18
714 719 7.088905 TGTACTCTCTCCGTTTCAAATTACTC 58.911 38.462 0.00 0.00 0.00 2.59
715 720 6.989659 TGTACTCTCTCCGTTTCAAATTACT 58.010 36.000 0.00 0.00 0.00 2.24
716 721 7.647907 TTGTACTCTCTCCGTTTCAAATTAC 57.352 36.000 0.00 0.00 0.00 1.89
717 722 7.929785 ACTTTGTACTCTCTCCGTTTCAAATTA 59.070 33.333 0.00 0.00 0.00 1.40
718 723 6.766467 ACTTTGTACTCTCTCCGTTTCAAATT 59.234 34.615 0.00 0.00 0.00 1.82
719 724 6.289064 ACTTTGTACTCTCTCCGTTTCAAAT 58.711 36.000 0.00 0.00 0.00 2.32
720 725 5.667466 ACTTTGTACTCTCTCCGTTTCAAA 58.333 37.500 0.00 0.00 0.00 2.69
721 726 5.272283 ACTTTGTACTCTCTCCGTTTCAA 57.728 39.130 0.00 0.00 0.00 2.69
722 727 4.931661 ACTTTGTACTCTCTCCGTTTCA 57.068 40.909 0.00 0.00 0.00 2.69
723 728 5.287226 TCAACTTTGTACTCTCTCCGTTTC 58.713 41.667 0.00 0.00 0.00 2.78
724 729 5.068723 TCTCAACTTTGTACTCTCTCCGTTT 59.931 40.000 0.00 0.00 0.00 3.60
725 730 4.583489 TCTCAACTTTGTACTCTCTCCGTT 59.417 41.667 0.00 0.00 0.00 4.44
726 731 4.023021 GTCTCAACTTTGTACTCTCTCCGT 60.023 45.833 0.00 0.00 0.00 4.69
727 732 4.023107 TGTCTCAACTTTGTACTCTCTCCG 60.023 45.833 0.00 0.00 0.00 4.63
728 733 5.010213 AGTGTCTCAACTTTGTACTCTCTCC 59.990 44.000 0.00 0.00 0.00 3.71
729 734 6.079424 AGTGTCTCAACTTTGTACTCTCTC 57.921 41.667 0.00 0.00 0.00 3.20
730 735 6.127310 ACAAGTGTCTCAACTTTGTACTCTCT 60.127 38.462 0.00 0.00 38.34 3.10
731 736 6.043411 ACAAGTGTCTCAACTTTGTACTCTC 58.957 40.000 0.00 0.00 38.34 3.20
732 737 5.978814 ACAAGTGTCTCAACTTTGTACTCT 58.021 37.500 0.00 0.00 38.34 3.24
733 738 6.663944 AACAAGTGTCTCAACTTTGTACTC 57.336 37.500 0.00 0.00 38.34 2.59
734 739 7.305474 CAAAACAAGTGTCTCAACTTTGTACT 58.695 34.615 0.00 0.00 38.34 2.73
735 740 6.526674 CCAAAACAAGTGTCTCAACTTTGTAC 59.473 38.462 0.00 0.00 38.34 2.90
736 741 6.349777 CCCAAAACAAGTGTCTCAACTTTGTA 60.350 38.462 4.31 0.00 38.34 2.41
737 742 5.469479 CCAAAACAAGTGTCTCAACTTTGT 58.531 37.500 4.31 0.00 38.34 2.83
738 743 4.864247 CCCAAAACAAGTGTCTCAACTTTG 59.136 41.667 0.00 0.00 38.34 2.77
739 744 4.770010 TCCCAAAACAAGTGTCTCAACTTT 59.230 37.500 0.00 0.00 38.34 2.66
740 745 4.157840 GTCCCAAAACAAGTGTCTCAACTT 59.842 41.667 0.00 0.00 41.08 2.66
741 746 3.694566 GTCCCAAAACAAGTGTCTCAACT 59.305 43.478 0.00 0.00 0.00 3.16
742 747 3.486875 CGTCCCAAAACAAGTGTCTCAAC 60.487 47.826 0.00 0.00 0.00 3.18
743 748 2.680841 CGTCCCAAAACAAGTGTCTCAA 59.319 45.455 0.00 0.00 0.00 3.02
744 749 2.285083 CGTCCCAAAACAAGTGTCTCA 58.715 47.619 0.00 0.00 0.00 3.27
745 750 1.602377 CCGTCCCAAAACAAGTGTCTC 59.398 52.381 0.00 0.00 0.00 3.36
746 751 1.210967 TCCGTCCCAAAACAAGTGTCT 59.789 47.619 0.00 0.00 0.00 3.41
747 752 1.602377 CTCCGTCCCAAAACAAGTGTC 59.398 52.381 0.00 0.00 0.00 3.67
748 753 1.675552 CTCCGTCCCAAAACAAGTGT 58.324 50.000 0.00 0.00 0.00 3.55
749 754 0.951558 CCTCCGTCCCAAAACAAGTG 59.048 55.000 0.00 0.00 0.00 3.16
750 755 0.179001 CCCTCCGTCCCAAAACAAGT 60.179 55.000 0.00 0.00 0.00 3.16
751 756 0.109723 TCCCTCCGTCCCAAAACAAG 59.890 55.000 0.00 0.00 0.00 3.16
752 757 0.109723 CTCCCTCCGTCCCAAAACAA 59.890 55.000 0.00 0.00 0.00 2.83
753 758 1.057851 ACTCCCTCCGTCCCAAAACA 61.058 55.000 0.00 0.00 0.00 2.83
754 759 0.978907 TACTCCCTCCGTCCCAAAAC 59.021 55.000 0.00 0.00 0.00 2.43
755 760 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
756 761 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
757 762 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
758 763 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
759 764 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
760 765 4.750021 ATTTTTAGTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
761 766 7.099120 TGTTAATTTTTAGTACTCCCTCCGTC 58.901 38.462 0.00 0.00 0.00 4.79
762 767 7.008021 TGTTAATTTTTAGTACTCCCTCCGT 57.992 36.000 0.00 0.00 0.00 4.69
763 768 7.388500 TGTTGTTAATTTTTAGTACTCCCTCCG 59.612 37.037 0.00 0.00 0.00 4.63
764 769 8.625786 TGTTGTTAATTTTTAGTACTCCCTCC 57.374 34.615 0.00 0.00 0.00 4.30
765 770 8.235226 GCTGTTGTTAATTTTTAGTACTCCCTC 58.765 37.037 0.00 0.00 0.00 4.30
766 771 7.942894 AGCTGTTGTTAATTTTTAGTACTCCCT 59.057 33.333 0.00 0.00 0.00 4.20
767 772 8.107399 AGCTGTTGTTAATTTTTAGTACTCCC 57.893 34.615 0.00 0.00 0.00 4.30
768 773 9.961265 AAAGCTGTTGTTAATTTTTAGTACTCC 57.039 29.630 0.00 0.00 0.00 3.85
1222 2381 2.502093 CCCGTACTTGCCGCCATA 59.498 61.111 0.00 0.00 0.00 2.74
1223 2382 4.483243 CCCCGTACTTGCCGCCAT 62.483 66.667 0.00 0.00 0.00 4.40
1233 2392 4.517815 TTGATCCGCGCCCCGTAC 62.518 66.667 0.00 0.00 34.38 3.67
1249 2408 1.312815 GTCTGCAACTTGGAGTGCTT 58.687 50.000 9.84 0.00 37.12 3.91
1405 2564 3.142174 CCGGCTTCTTCTTCTTCTTTGT 58.858 45.455 0.00 0.00 0.00 2.83
1682 2841 0.467474 ATCCCCGTCATCAGTAGCGA 60.467 55.000 0.00 0.00 0.00 4.93
1794 2959 0.605589 GGTCAGTGTCAGTCCTCAGG 59.394 60.000 0.00 0.00 0.00 3.86
1797 2962 1.271102 GTCAGGTCAGTGTCAGTCCTC 59.729 57.143 0.00 0.00 0.00 3.71
1864 3032 2.632377 CTGCTAATCCACCACATCGTT 58.368 47.619 0.00 0.00 0.00 3.85
1865 3033 1.743772 GCTGCTAATCCACCACATCGT 60.744 52.381 0.00 0.00 0.00 3.73
1903 3072 5.036737 ACGAACAGAAAAACAGAGCATTTG 58.963 37.500 0.00 0.00 0.00 2.32
1928 3099 2.030628 CGTGTTTCCCATTTTTACGCCT 60.031 45.455 0.00 0.00 0.00 5.52
1939 3110 0.881159 AATTCGTCGCGTGTTTCCCA 60.881 50.000 5.77 0.00 0.00 4.37
1963 3134 3.243839 ACAGTAAGCACCAGCAAAATTGG 60.244 43.478 0.00 0.00 45.49 3.16
2003 3175 9.439500 CAAACAAAAACATTGGAGGATATTGAT 57.561 29.630 0.00 0.00 0.00 2.57
2004 3176 7.387397 GCAAACAAAAACATTGGAGGATATTGA 59.613 33.333 0.00 0.00 0.00 2.57
2005 3177 7.388500 AGCAAACAAAAACATTGGAGGATATTG 59.612 33.333 0.00 0.00 0.00 1.90
2006 3178 7.452562 AGCAAACAAAAACATTGGAGGATATT 58.547 30.769 0.00 0.00 0.00 1.28
2007 3179 7.008021 AGCAAACAAAAACATTGGAGGATAT 57.992 32.000 0.00 0.00 0.00 1.63
2108 3293 4.954875 AGATAGCAAGCATAGTTCTGTCC 58.045 43.478 0.00 0.00 0.00 4.02
2195 3430 6.321181 TCACTTGTAAGAAGAAAAAGGCATGT 59.679 34.615 0.00 0.00 0.00 3.21
2253 3495 2.307496 TGCATTAATATGGGCCCCAG 57.693 50.000 22.27 0.65 36.75 4.45
2264 3506 5.294060 GCGTTGGGATTCAAATTGCATTAAT 59.706 36.000 0.00 0.00 37.08 1.40
2308 3561 9.601217 AATCGCAATACAACTCTAAAATCTAGT 57.399 29.630 0.00 0.00 0.00 2.57
2357 3611 7.871853 TGCTCAAGTAGTTAACAAAGAAATCC 58.128 34.615 8.61 0.00 0.00 3.01
2554 3863 9.743057 CACACATTCTGAAAACCAACTAAAATA 57.257 29.630 0.00 0.00 0.00 1.40
2636 3994 3.429085 GCTGTTATAAGCATGCACACAC 58.571 45.455 21.98 10.04 43.01 3.82
2638 3996 2.684881 AGGCTGTTATAAGCATGCACAC 59.315 45.455 21.98 8.95 45.43 3.82
2650 4008 3.341823 CAGCTCTGTTCAAGGCTGTTAT 58.658 45.455 14.01 0.00 41.53 1.89
2709 4077 2.263945 GTCACCCCAAAACGTTGTTTG 58.736 47.619 0.00 3.37 38.07 2.93
2717 4085 4.010349 CTGAATAGAGGTCACCCCAAAAC 58.990 47.826 0.00 0.00 34.66 2.43
2845 4214 8.408601 GCAGAAATGTTTGTAGATGTCCATAAT 58.591 33.333 0.00 0.00 0.00 1.28
2848 4217 5.948162 AGCAGAAATGTTTGTAGATGTCCAT 59.052 36.000 0.00 0.00 0.00 3.41
2851 4220 6.073058 TCACAGCAGAAATGTTTGTAGATGTC 60.073 38.462 0.00 0.00 0.00 3.06
2852 4221 5.764686 TCACAGCAGAAATGTTTGTAGATGT 59.235 36.000 0.00 0.00 0.00 3.06
2853 4222 6.245115 TCACAGCAGAAATGTTTGTAGATG 57.755 37.500 0.00 0.00 0.00 2.90
2854 4223 7.458409 AATCACAGCAGAAATGTTTGTAGAT 57.542 32.000 0.00 0.00 0.00 1.98
2855 4224 6.882610 AATCACAGCAGAAATGTTTGTAGA 57.117 33.333 0.00 0.00 0.00 2.59
2856 4225 6.129009 GCAAATCACAGCAGAAATGTTTGTAG 60.129 38.462 0.00 0.00 0.00 2.74
2857 4226 5.691305 GCAAATCACAGCAGAAATGTTTGTA 59.309 36.000 0.00 0.00 0.00 2.41
2858 4227 4.508861 GCAAATCACAGCAGAAATGTTTGT 59.491 37.500 0.00 0.00 0.00 2.83
2859 4228 5.013861 GCAAATCACAGCAGAAATGTTTG 57.986 39.130 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.