Multiple sequence alignment - TraesCS6B01G158300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G158300 chr6B 100.000 5757 0 0 1 5757 160898142 160903898 0.000000e+00 10632.0
1 TraesCS6B01G158300 chr6B 88.381 1377 133 14 4404 5757 160909760 160911132 0.000000e+00 1631.0
2 TraesCS6B01G158300 chr6B 87.153 1152 130 10 4618 5757 159987662 159988807 0.000000e+00 1291.0
3 TraesCS6B01G158300 chr6B 86.570 1169 148 8 4595 5757 160661006 160662171 0.000000e+00 1280.0
4 TraesCS6B01G158300 chr6B 80.203 985 159 19 863 1837 31513095 31514053 0.000000e+00 706.0
5 TraesCS6B01G158300 chr6B 82.169 830 133 10 892 1711 31016459 31015635 0.000000e+00 699.0
6 TraesCS6B01G158300 chr6B 90.164 122 11 1 4245 4366 160909639 160909759 2.150000e-34 158.0
7 TraesCS6B01G158300 chr6B 77.295 207 43 4 3277 3480 223568332 223568127 1.010000e-22 119.0
8 TraesCS6B01G158300 chr6A 94.978 1354 64 4 4406 5757 101863015 101864366 0.000000e+00 2121.0
9 TraesCS6B01G158300 chr6A 93.333 1080 66 2 1852 2931 101859515 101860588 0.000000e+00 1591.0
10 TraesCS6B01G158300 chr6A 94.937 948 43 3 908 1852 101858323 101859268 0.000000e+00 1480.0
11 TraesCS6B01G158300 chr6A 87.760 1152 129 8 4618 5757 101560492 101561643 0.000000e+00 1336.0
12 TraesCS6B01G158300 chr6A 90.870 942 70 10 2930 3867 101860636 101861565 0.000000e+00 1249.0
13 TraesCS6B01G158300 chr6A 85.763 1173 160 6 4590 5757 101545987 101547157 0.000000e+00 1234.0
14 TraesCS6B01G158300 chr6A 85.445 1168 160 8 4595 5757 101842809 101843971 0.000000e+00 1206.0
15 TraesCS6B01G158300 chr6A 92.691 301 11 2 508 808 101857883 101858172 1.920000e-114 424.0
16 TraesCS6B01G158300 chr6A 89.769 303 19 3 4061 4356 101862583 101862880 1.510000e-100 377.0
17 TraesCS6B01G158300 chr6A 96.377 138 5 0 3859 3996 101862395 101862532 1.610000e-55 228.0
18 TraesCS6B01G158300 chr6D 87.393 1753 171 27 4019 5757 85610928 85609212 0.000000e+00 1967.0
19 TraesCS6B01G158300 chr6D 94.616 1263 55 5 601 1862 84647638 84648888 0.000000e+00 1943.0
20 TraesCS6B01G158300 chr6D 89.368 1439 104 17 2930 4360 84650132 84651529 0.000000e+00 1764.0
21 TraesCS6B01G158300 chr6D 89.414 1332 125 12 4440 5757 84651560 84652889 0.000000e+00 1664.0
22 TraesCS6B01G158300 chr6D 94.567 1086 39 8 1858 2934 84649014 84650088 0.000000e+00 1661.0
23 TraesCS6B01G158300 chr6D 95.220 1046 43 4 820 1862 85626720 85625679 0.000000e+00 1648.0
24 TraesCS6B01G158300 chr6D 94.688 960 42 8 1858 2814 85625559 85624606 0.000000e+00 1482.0
25 TraesCS6B01G158300 chr6D 91.690 1071 78 9 2933 3996 85611982 85610916 0.000000e+00 1474.0
26 TraesCS6B01G158300 chr6D 88.108 1152 125 8 4618 5757 84229669 84230820 0.000000e+00 1358.0
27 TraesCS6B01G158300 chr6D 86.786 1173 148 6 4590 5757 84471849 84473019 0.000000e+00 1301.0
28 TraesCS6B01G158300 chr6D 85.959 1168 157 6 4595 5757 84215953 84217118 0.000000e+00 1242.0
29 TraesCS6B01G158300 chr6D 93.581 296 12 3 508 802 85631599 85631310 8.860000e-118 435.0
30 TraesCS6B01G158300 chr6D 94.309 123 6 1 2812 2934 85612151 85612030 2.740000e-43 187.0
31 TraesCS6B01G158300 chrUn 81.339 986 146 26 863 1837 95188082 95189040 0.000000e+00 767.0
32 TraesCS6B01G158300 chr5D 80.600 866 130 32 998 1843 520839463 520840310 8.140000e-178 634.0
33 TraesCS6B01G158300 chr5D 80.102 196 30 9 288 482 408093082 408093269 2.800000e-28 137.0
34 TraesCS6B01G158300 chr5D 74.632 272 60 8 3214 3480 469430367 469430634 1.700000e-20 111.0
35 TraesCS6B01G158300 chr5D 79.433 141 18 10 342 480 459144788 459144657 7.950000e-14 89.8
36 TraesCS6B01G158300 chr5D 90.000 60 5 1 426 484 410485704 410485763 6.190000e-10 76.8
37 TraesCS6B01G158300 chr5A 82.621 702 109 11 1000 1695 649365194 649365888 4.930000e-170 608.0
38 TraesCS6B01G158300 chr5A 79.558 181 29 7 3216 3392 402536770 402536946 7.830000e-24 122.0
39 TraesCS6B01G158300 chr5A 88.710 62 6 1 427 488 673376029 673375969 2.220000e-09 75.0
40 TraesCS6B01G158300 chr5B 79.339 847 135 32 1018 1843 656726278 656727105 5.040000e-155 558.0
41 TraesCS6B01G158300 chr3B 75.851 323 66 10 3153 3467 70467430 70467112 2.780000e-33 154.0
42 TraesCS6B01G158300 chr3B 82.955 88 10 5 385 471 418473145 418473228 2.220000e-09 75.0
43 TraesCS6B01G158300 chr3A 81.053 190 28 7 287 475 161466546 161466728 1.670000e-30 145.0
44 TraesCS6B01G158300 chr3A 76.534 277 50 12 3210 3476 496047424 496047695 2.800000e-28 137.0
45 TraesCS6B01G158300 chr2D 76.779 267 55 7 3216 3477 159596173 159596437 6.010000e-30 143.0
46 TraesCS6B01G158300 chr1B 80.500 200 26 8 281 479 583406393 583406580 2.160000e-29 141.0
47 TraesCS6B01G158300 chr2B 78.723 141 27 3 3341 3478 5817572 5817432 2.210000e-14 91.6
48 TraesCS6B01G158300 chr1D 82.292 96 8 7 377 470 476593506 476593418 2.220000e-09 75.0
49 TraesCS6B01G158300 chr3D 90.385 52 5 0 428 479 509310517 509310466 1.040000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G158300 chr6B 160898142 160903898 5756 False 10632.000000 10632 100.000000 1 5757 1 chr6B.!!$F4 5756
1 TraesCS6B01G158300 chr6B 159987662 159988807 1145 False 1291.000000 1291 87.153000 4618 5757 1 chr6B.!!$F2 1139
2 TraesCS6B01G158300 chr6B 160661006 160662171 1165 False 1280.000000 1280 86.570000 4595 5757 1 chr6B.!!$F3 1162
3 TraesCS6B01G158300 chr6B 160909639 160911132 1493 False 894.500000 1631 89.272500 4245 5757 2 chr6B.!!$F5 1512
4 TraesCS6B01G158300 chr6B 31513095 31514053 958 False 706.000000 706 80.203000 863 1837 1 chr6B.!!$F1 974
5 TraesCS6B01G158300 chr6B 31015635 31016459 824 True 699.000000 699 82.169000 892 1711 1 chr6B.!!$R1 819
6 TraesCS6B01G158300 chr6A 101560492 101561643 1151 False 1336.000000 1336 87.760000 4618 5757 1 chr6A.!!$F2 1139
7 TraesCS6B01G158300 chr6A 101545987 101547157 1170 False 1234.000000 1234 85.763000 4590 5757 1 chr6A.!!$F1 1167
8 TraesCS6B01G158300 chr6A 101842809 101843971 1162 False 1206.000000 1206 85.445000 4595 5757 1 chr6A.!!$F3 1162
9 TraesCS6B01G158300 chr6A 101857883 101864366 6483 False 1067.142857 2121 93.279286 508 5757 7 chr6A.!!$F4 5249
10 TraesCS6B01G158300 chr6D 84647638 84652889 5251 False 1758.000000 1943 91.991250 601 5757 4 chr6D.!!$F4 5156
11 TraesCS6B01G158300 chr6D 85624606 85626720 2114 True 1565.000000 1648 94.954000 820 2814 2 chr6D.!!$R3 1994
12 TraesCS6B01G158300 chr6D 84229669 84230820 1151 False 1358.000000 1358 88.108000 4618 5757 1 chr6D.!!$F2 1139
13 TraesCS6B01G158300 chr6D 84471849 84473019 1170 False 1301.000000 1301 86.786000 4590 5757 1 chr6D.!!$F3 1167
14 TraesCS6B01G158300 chr6D 84215953 84217118 1165 False 1242.000000 1242 85.959000 4595 5757 1 chr6D.!!$F1 1162
15 TraesCS6B01G158300 chr6D 85609212 85612151 2939 True 1209.333333 1967 91.130667 2812 5757 3 chr6D.!!$R2 2945
16 TraesCS6B01G158300 chrUn 95188082 95189040 958 False 767.000000 767 81.339000 863 1837 1 chrUn.!!$F1 974
17 TraesCS6B01G158300 chr5D 520839463 520840310 847 False 634.000000 634 80.600000 998 1843 1 chr5D.!!$F4 845
18 TraesCS6B01G158300 chr5A 649365194 649365888 694 False 608.000000 608 82.621000 1000 1695 1 chr5A.!!$F2 695
19 TraesCS6B01G158300 chr5B 656726278 656727105 827 False 558.000000 558 79.339000 1018 1843 1 chr5B.!!$F1 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.033504 ACACCTACAGCGGAGTGTTG 59.966 55.0 6.34 0.0 40.43 3.33 F
209 210 0.033504 CACCTACAGCGGAGTGTTGT 59.966 55.0 0.00 0.0 44.83 3.32 F
210 211 0.033504 ACCTACAGCGGAGTGTTGTG 59.966 55.0 0.00 0.0 42.50 3.33 F
211 212 0.033504 CCTACAGCGGAGTGTTGTGT 59.966 55.0 0.00 0.0 42.50 3.72 F
2205 2702 0.250338 GGCTATAAAGTCCCCGCCAG 60.250 60.0 0.00 0.0 37.48 4.85 F
3999 5398 0.453390 CAGAAAATCCAAGCCCTCGC 59.547 55.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 2702 1.387756 CGTTTACGATGACACGGGTTC 59.612 52.381 0.00 0.00 43.02 3.62 R
2215 2712 0.373716 GAGCCCAAGCGTTTACGATG 59.626 55.000 6.44 4.22 46.67 3.84 R
2270 2767 0.693049 AACCTCTCCGGCATGAACTT 59.307 50.000 0.00 0.00 35.61 2.66 R
2353 2850 0.830444 TCCCGGGACATATCCTTCGG 60.830 60.000 22.63 1.03 44.94 4.30 R
4020 5419 0.036294 GCGAAGGTTGGGCTTAGAGT 60.036 55.000 0.00 0.00 0.00 3.24 R
4811 6355 0.033504 TGAGCACCTTTCAGACGTCC 59.966 55.000 13.01 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.171878 GGGGAAGGGATAAGGAAGAAAG 57.828 50.000 0.00 0.00 0.00 2.62
22 23 3.528078 GGGGAAGGGATAAGGAAGAAAGT 59.472 47.826 0.00 0.00 0.00 2.66
23 24 4.527944 GGGAAGGGATAAGGAAGAAAGTG 58.472 47.826 0.00 0.00 0.00 3.16
24 25 4.227527 GGGAAGGGATAAGGAAGAAAGTGA 59.772 45.833 0.00 0.00 0.00 3.41
25 26 5.432645 GGAAGGGATAAGGAAGAAAGTGAG 58.567 45.833 0.00 0.00 0.00 3.51
26 27 4.495690 AGGGATAAGGAAGAAAGTGAGC 57.504 45.455 0.00 0.00 0.00 4.26
27 28 3.118592 AGGGATAAGGAAGAAAGTGAGCG 60.119 47.826 0.00 0.00 0.00 5.03
28 29 3.369576 GGGATAAGGAAGAAAGTGAGCGT 60.370 47.826 0.00 0.00 0.00 5.07
29 30 3.866327 GGATAAGGAAGAAAGTGAGCGTC 59.134 47.826 0.00 0.00 0.00 5.19
30 31 1.784525 AAGGAAGAAAGTGAGCGTCG 58.215 50.000 0.00 0.00 0.00 5.12
31 32 0.667792 AGGAAGAAAGTGAGCGTCGC 60.668 55.000 9.80 9.80 0.00 5.19
32 33 0.944311 GGAAGAAAGTGAGCGTCGCA 60.944 55.000 21.09 0.00 0.00 5.10
33 34 1.071605 GAAGAAAGTGAGCGTCGCAT 58.928 50.000 21.09 4.29 0.00 4.73
34 35 0.792640 AAGAAAGTGAGCGTCGCATG 59.207 50.000 21.09 0.00 0.00 4.06
35 36 0.038251 AGAAAGTGAGCGTCGCATGA 60.038 50.000 21.09 0.00 0.00 3.07
36 37 1.002366 GAAAGTGAGCGTCGCATGAT 58.998 50.000 21.09 0.00 0.00 2.45
37 38 1.002366 AAAGTGAGCGTCGCATGATC 58.998 50.000 21.09 8.65 0.00 2.92
38 39 0.807667 AAGTGAGCGTCGCATGATCC 60.808 55.000 21.09 2.71 0.00 3.36
39 40 1.519234 GTGAGCGTCGCATGATCCA 60.519 57.895 21.09 4.33 0.00 3.41
40 41 1.227060 TGAGCGTCGCATGATCCAG 60.227 57.895 21.09 0.00 0.00 3.86
41 42 1.066422 GAGCGTCGCATGATCCAGA 59.934 57.895 21.09 0.00 0.00 3.86
42 43 0.319383 GAGCGTCGCATGATCCAGAT 60.319 55.000 21.09 0.00 0.00 2.90
43 44 0.319383 AGCGTCGCATGATCCAGATC 60.319 55.000 21.09 0.47 38.29 2.75
57 58 7.387119 TGATCCAGATCAAATGAAAACTGAG 57.613 36.000 7.88 7.12 44.14 3.35
58 59 5.633830 TCCAGATCAAATGAAAACTGAGC 57.366 39.130 13.29 0.00 0.00 4.26
59 60 4.154737 TCCAGATCAAATGAAAACTGAGCG 59.845 41.667 13.29 0.00 30.90 5.03
60 61 4.083110 CCAGATCAAATGAAAACTGAGCGT 60.083 41.667 13.29 0.00 30.90 5.07
61 62 5.084722 CAGATCAAATGAAAACTGAGCGTC 58.915 41.667 0.00 0.00 30.90 5.19
62 63 4.999950 AGATCAAATGAAAACTGAGCGTCT 59.000 37.500 0.00 0.00 30.90 4.18
63 64 4.472691 TCAAATGAAAACTGAGCGTCTG 57.527 40.909 0.00 0.00 0.00 3.51
64 65 3.250762 TCAAATGAAAACTGAGCGTCTGG 59.749 43.478 0.00 0.00 0.00 3.86
65 66 1.160137 ATGAAAACTGAGCGTCTGGC 58.840 50.000 0.00 0.00 44.05 4.85
66 67 0.884704 TGAAAACTGAGCGTCTGGCC 60.885 55.000 0.00 0.00 45.17 5.36
67 68 1.901650 GAAAACTGAGCGTCTGGCCG 61.902 60.000 0.00 0.00 45.17 6.13
68 69 2.660258 AAAACTGAGCGTCTGGCCGT 62.660 55.000 0.00 0.00 45.17 5.68
69 70 2.660258 AAACTGAGCGTCTGGCCGTT 62.660 55.000 0.00 0.00 45.17 4.44
70 71 3.114616 CTGAGCGTCTGGCCGTTG 61.115 66.667 0.00 0.00 45.17 4.10
71 72 3.573772 CTGAGCGTCTGGCCGTTGA 62.574 63.158 0.00 0.00 45.17 3.18
72 73 3.112709 GAGCGTCTGGCCGTTGAC 61.113 66.667 11.79 11.79 45.17 3.18
73 74 3.858868 GAGCGTCTGGCCGTTGACA 62.859 63.158 18.91 0.00 45.17 3.58
74 75 2.970324 GCGTCTGGCCGTTGACAA 60.970 61.111 18.91 0.00 34.80 3.18
75 76 2.539338 GCGTCTGGCCGTTGACAAA 61.539 57.895 18.91 0.00 34.80 2.83
76 77 2.018544 CGTCTGGCCGTTGACAAAA 58.981 52.632 18.91 0.00 33.18 2.44
77 78 0.316689 CGTCTGGCCGTTGACAAAAC 60.317 55.000 18.91 0.00 33.18 2.43
78 79 0.736053 GTCTGGCCGTTGACAAAACA 59.264 50.000 15.56 0.00 33.75 2.83
79 80 1.133407 GTCTGGCCGTTGACAAAACAA 59.867 47.619 15.56 0.00 33.75 2.83
80 81 1.819288 TCTGGCCGTTGACAAAACAAA 59.181 42.857 0.00 0.00 0.00 2.83
81 82 2.428890 TCTGGCCGTTGACAAAACAAAT 59.571 40.909 0.00 0.00 0.00 2.32
82 83 2.794350 CTGGCCGTTGACAAAACAAATC 59.206 45.455 0.00 0.00 0.00 2.17
83 84 2.428890 TGGCCGTTGACAAAACAAATCT 59.571 40.909 0.00 0.00 0.00 2.40
84 85 3.632604 TGGCCGTTGACAAAACAAATCTA 59.367 39.130 0.00 0.00 0.00 1.98
85 86 4.098044 TGGCCGTTGACAAAACAAATCTAA 59.902 37.500 0.00 0.00 0.00 2.10
86 87 5.221342 TGGCCGTTGACAAAACAAATCTAAT 60.221 36.000 0.00 0.00 0.00 1.73
87 88 5.118510 GGCCGTTGACAAAACAAATCTAATG 59.881 40.000 0.00 0.00 0.00 1.90
88 89 5.689961 GCCGTTGACAAAACAAATCTAATGT 59.310 36.000 0.00 0.00 0.00 2.71
89 90 6.200097 GCCGTTGACAAAACAAATCTAATGTT 59.800 34.615 0.00 0.00 42.56 2.71
90 91 7.566868 GCCGTTGACAAAACAAATCTAATGTTC 60.567 37.037 0.00 0.00 39.98 3.18
91 92 7.357206 CCGTTGACAAAACAAATCTAATGTTCG 60.357 37.037 0.00 0.00 39.98 3.95
92 93 7.165154 CGTTGACAAAACAAATCTAATGTTCGT 59.835 33.333 0.00 0.00 39.98 3.85
93 94 8.803799 GTTGACAAAACAAATCTAATGTTCGTT 58.196 29.630 0.00 0.00 39.98 3.85
172 173 8.991783 ACATCTAATGTTCATTTGATCCTCAT 57.008 30.769 15.46 0.00 41.63 2.90
202 203 6.528537 TTAGTAAATAACACCTACAGCGGA 57.471 37.500 0.00 0.00 0.00 5.54
203 204 5.007385 AGTAAATAACACCTACAGCGGAG 57.993 43.478 0.00 0.00 0.00 4.63
204 205 3.975168 AAATAACACCTACAGCGGAGT 57.025 42.857 0.00 0.00 0.00 3.85
205 206 2.961526 ATAACACCTACAGCGGAGTG 57.038 50.000 0.00 0.00 36.30 3.51
206 207 1.624336 TAACACCTACAGCGGAGTGT 58.376 50.000 6.34 6.34 45.02 3.55
207 208 0.756903 AACACCTACAGCGGAGTGTT 59.243 50.000 14.83 14.83 45.90 3.32
208 209 0.033504 ACACCTACAGCGGAGTGTTG 59.966 55.000 6.34 0.00 40.43 3.33
209 210 0.033504 CACCTACAGCGGAGTGTTGT 59.966 55.000 0.00 0.00 44.83 3.32
210 211 0.033504 ACCTACAGCGGAGTGTTGTG 59.966 55.000 0.00 0.00 42.50 3.33
211 212 0.033504 CCTACAGCGGAGTGTTGTGT 59.966 55.000 0.00 0.00 42.50 3.72
212 213 1.540363 CCTACAGCGGAGTGTTGTGTT 60.540 52.381 0.00 0.00 42.50 3.32
213 214 2.288579 CCTACAGCGGAGTGTTGTGTTA 60.289 50.000 0.00 0.00 42.50 2.41
214 215 2.543777 ACAGCGGAGTGTTGTGTTAT 57.456 45.000 0.00 0.00 40.87 1.89
215 216 2.846193 ACAGCGGAGTGTTGTGTTATT 58.154 42.857 0.00 0.00 40.87 1.40
216 217 3.211045 ACAGCGGAGTGTTGTGTTATTT 58.789 40.909 0.00 0.00 40.87 1.40
217 218 3.630312 ACAGCGGAGTGTTGTGTTATTTT 59.370 39.130 0.00 0.00 40.87 1.82
218 219 3.974401 CAGCGGAGTGTTGTGTTATTTTG 59.026 43.478 0.00 0.00 0.00 2.44
219 220 3.880490 AGCGGAGTGTTGTGTTATTTTGA 59.120 39.130 0.00 0.00 0.00 2.69
220 221 4.336993 AGCGGAGTGTTGTGTTATTTTGAA 59.663 37.500 0.00 0.00 0.00 2.69
221 222 4.675114 GCGGAGTGTTGTGTTATTTTGAAG 59.325 41.667 0.00 0.00 0.00 3.02
222 223 5.504994 GCGGAGTGTTGTGTTATTTTGAAGA 60.505 40.000 0.00 0.00 0.00 2.87
223 224 6.668323 CGGAGTGTTGTGTTATTTTGAAGAT 58.332 36.000 0.00 0.00 0.00 2.40
224 225 7.572353 GCGGAGTGTTGTGTTATTTTGAAGATA 60.572 37.037 0.00 0.00 0.00 1.98
225 226 8.450964 CGGAGTGTTGTGTTATTTTGAAGATAT 58.549 33.333 0.00 0.00 0.00 1.63
243 244 8.939929 TGAAGATATAAGCTATATGCAAGTTGC 58.060 33.333 21.17 21.17 45.94 4.17
260 261 8.218256 GCAAGTTGCATGAAAATTTATTTTGG 57.782 30.769 22.90 0.00 44.26 3.28
261 262 7.861872 GCAAGTTGCATGAAAATTTATTTTGGT 59.138 29.630 22.90 0.00 44.26 3.67
262 263 9.733219 CAAGTTGCATGAAAATTTATTTTGGTT 57.267 25.926 0.00 0.00 39.86 3.67
276 277 9.981114 ATTTATTTTGGTTAAGTCAACTTCTGG 57.019 29.630 0.00 0.00 37.30 3.86
277 278 4.911514 TTTGGTTAAGTCAACTTCTGGC 57.088 40.909 0.00 0.00 37.30 4.85
278 279 3.569194 TGGTTAAGTCAACTTCTGGCA 57.431 42.857 0.00 0.00 37.30 4.92
279 280 3.892284 TGGTTAAGTCAACTTCTGGCAA 58.108 40.909 0.00 0.00 37.30 4.52
280 281 4.469657 TGGTTAAGTCAACTTCTGGCAAT 58.530 39.130 0.00 0.00 37.30 3.56
281 282 4.892934 TGGTTAAGTCAACTTCTGGCAATT 59.107 37.500 0.00 0.00 37.30 2.32
282 283 6.065374 TGGTTAAGTCAACTTCTGGCAATTA 58.935 36.000 0.00 0.00 37.30 1.40
283 284 6.719370 TGGTTAAGTCAACTTCTGGCAATTAT 59.281 34.615 0.00 0.00 37.30 1.28
284 285 7.029563 GGTTAAGTCAACTTCTGGCAATTATG 58.970 38.462 0.00 0.00 37.30 1.90
285 286 7.309194 GGTTAAGTCAACTTCTGGCAATTATGT 60.309 37.037 0.00 0.00 37.30 2.29
286 287 6.655078 AAGTCAACTTCTGGCAATTATGTT 57.345 33.333 0.00 0.00 29.16 2.71
287 288 7.759489 AAGTCAACTTCTGGCAATTATGTTA 57.241 32.000 0.00 0.00 29.16 2.41
288 289 7.759489 AGTCAACTTCTGGCAATTATGTTAA 57.241 32.000 0.00 0.00 29.16 2.01
289 290 7.593825 AGTCAACTTCTGGCAATTATGTTAAC 58.406 34.615 0.00 0.00 29.16 2.01
290 291 7.230510 AGTCAACTTCTGGCAATTATGTTAACA 59.769 33.333 11.41 11.41 29.16 2.41
291 292 7.538678 GTCAACTTCTGGCAATTATGTTAACAG 59.461 37.037 14.65 0.90 0.00 3.16
292 293 7.230510 TCAACTTCTGGCAATTATGTTAACAGT 59.769 33.333 14.65 5.26 0.00 3.55
293 294 7.524717 ACTTCTGGCAATTATGTTAACAGTT 57.475 32.000 14.65 6.19 0.00 3.16
294 295 7.951591 ACTTCTGGCAATTATGTTAACAGTTT 58.048 30.769 14.65 4.72 0.00 2.66
295 296 8.421002 ACTTCTGGCAATTATGTTAACAGTTTT 58.579 29.630 14.65 4.38 0.00 2.43
296 297 8.586570 TTCTGGCAATTATGTTAACAGTTTTG 57.413 30.769 14.65 15.95 0.00 2.44
297 298 6.644592 TCTGGCAATTATGTTAACAGTTTTGC 59.355 34.615 27.34 27.34 37.15 3.68
298 299 6.520272 TGGCAATTATGTTAACAGTTTTGCT 58.480 32.000 30.41 13.49 37.59 3.91
299 300 7.661968 TGGCAATTATGTTAACAGTTTTGCTA 58.338 30.769 30.41 26.71 37.59 3.49
300 301 8.144478 TGGCAATTATGTTAACAGTTTTGCTAA 58.856 29.630 30.41 22.93 37.59 3.09
301 302 8.647226 GGCAATTATGTTAACAGTTTTGCTAAG 58.353 33.333 30.41 11.68 37.59 2.18
302 303 9.191995 GCAATTATGTTAACAGTTTTGCTAAGT 57.808 29.630 27.66 13.76 36.06 2.24
307 308 7.724305 TGTTAACAGTTTTGCTAAGTCTAGG 57.276 36.000 3.59 0.00 0.00 3.02
308 309 7.277396 TGTTAACAGTTTTGCTAAGTCTAGGT 58.723 34.615 3.59 0.00 0.00 3.08
309 310 7.771826 TGTTAACAGTTTTGCTAAGTCTAGGTT 59.228 33.333 3.59 0.00 0.00 3.50
310 311 6.619801 AACAGTTTTGCTAAGTCTAGGTTG 57.380 37.500 0.00 0.00 0.00 3.77
311 312 5.925509 ACAGTTTTGCTAAGTCTAGGTTGA 58.074 37.500 0.00 0.00 0.00 3.18
312 313 5.758784 ACAGTTTTGCTAAGTCTAGGTTGAC 59.241 40.000 0.00 0.00 37.23 3.18
314 315 7.152645 CAGTTTTGCTAAGTCTAGGTTGACTA 58.847 38.462 0.00 0.00 45.49 2.59
315 316 7.656137 CAGTTTTGCTAAGTCTAGGTTGACTAA 59.344 37.037 0.00 0.00 45.49 2.24
316 317 7.873505 AGTTTTGCTAAGTCTAGGTTGACTAAG 59.126 37.037 0.00 0.00 45.49 2.18
317 318 7.534723 TTTGCTAAGTCTAGGTTGACTAAGA 57.465 36.000 0.00 0.00 45.49 2.10
318 319 6.512342 TGCTAAGTCTAGGTTGACTAAGAC 57.488 41.667 0.00 7.75 45.49 3.01
319 320 6.246919 TGCTAAGTCTAGGTTGACTAAGACT 58.753 40.000 10.88 10.88 45.49 3.24
320 321 6.720288 TGCTAAGTCTAGGTTGACTAAGACTT 59.280 38.462 22.68 22.68 45.49 3.01
321 322 7.232941 TGCTAAGTCTAGGTTGACTAAGACTTT 59.767 37.037 23.52 14.55 45.49 2.66
322 323 7.542824 GCTAAGTCTAGGTTGACTAAGACTTTG 59.457 40.741 23.52 22.23 45.49 2.77
323 324 5.785243 AGTCTAGGTTGACTAAGACTTTGC 58.215 41.667 10.88 0.00 44.53 3.68
324 325 5.540719 AGTCTAGGTTGACTAAGACTTTGCT 59.459 40.000 10.88 0.00 44.53 3.91
325 326 6.720288 AGTCTAGGTTGACTAAGACTTTGCTA 59.280 38.462 10.88 0.00 44.53 3.49
326 327 7.397761 AGTCTAGGTTGACTAAGACTTTGCTAT 59.602 37.037 10.88 0.00 44.53 2.97
327 328 7.489757 GTCTAGGTTGACTAAGACTTTGCTATG 59.510 40.741 0.00 0.00 34.39 2.23
328 329 6.115448 AGGTTGACTAAGACTTTGCTATGT 57.885 37.500 0.00 0.00 0.00 2.29
329 330 6.166982 AGGTTGACTAAGACTTTGCTATGTC 58.833 40.000 6.14 6.14 0.00 3.06
330 331 5.351740 GGTTGACTAAGACTTTGCTATGTCC 59.648 44.000 9.90 0.00 34.02 4.02
331 332 5.086104 TGACTAAGACTTTGCTATGTCCC 57.914 43.478 9.90 0.00 34.02 4.46
332 333 4.530553 TGACTAAGACTTTGCTATGTCCCA 59.469 41.667 9.90 0.00 34.02 4.37
333 334 5.091261 ACTAAGACTTTGCTATGTCCCAG 57.909 43.478 9.90 9.63 34.02 4.45
334 335 4.532521 ACTAAGACTTTGCTATGTCCCAGT 59.467 41.667 9.90 10.13 34.02 4.00
335 336 3.618690 AGACTTTGCTATGTCCCAGTC 57.381 47.619 9.90 0.00 34.02 3.51
336 337 2.093973 AGACTTTGCTATGTCCCAGTCG 60.094 50.000 9.90 0.00 36.56 4.18
337 338 1.899814 ACTTTGCTATGTCCCAGTCGA 59.100 47.619 0.00 0.00 0.00 4.20
338 339 2.501723 ACTTTGCTATGTCCCAGTCGAT 59.498 45.455 0.00 0.00 0.00 3.59
339 340 3.704566 ACTTTGCTATGTCCCAGTCGATA 59.295 43.478 0.00 0.00 0.00 2.92
340 341 4.345257 ACTTTGCTATGTCCCAGTCGATAT 59.655 41.667 0.00 0.00 0.00 1.63
341 342 4.955811 TTGCTATGTCCCAGTCGATATT 57.044 40.909 0.00 0.00 0.00 1.28
342 343 6.041637 ACTTTGCTATGTCCCAGTCGATATTA 59.958 38.462 0.00 0.00 0.00 0.98
343 344 6.605471 TTGCTATGTCCCAGTCGATATTAT 57.395 37.500 0.00 0.00 0.00 1.28
344 345 6.208988 TGCTATGTCCCAGTCGATATTATC 57.791 41.667 0.00 0.00 0.00 1.75
345 346 5.952347 TGCTATGTCCCAGTCGATATTATCT 59.048 40.000 2.36 0.00 0.00 1.98
346 347 6.437477 TGCTATGTCCCAGTCGATATTATCTT 59.563 38.462 2.36 0.00 0.00 2.40
347 348 6.975772 GCTATGTCCCAGTCGATATTATCTTC 59.024 42.308 2.36 0.00 0.00 2.87
348 349 5.723672 TGTCCCAGTCGATATTATCTTCC 57.276 43.478 2.36 0.00 0.00 3.46
349 350 4.527038 TGTCCCAGTCGATATTATCTTCCC 59.473 45.833 2.36 0.00 0.00 3.97
350 351 4.773149 GTCCCAGTCGATATTATCTTCCCT 59.227 45.833 2.36 0.00 0.00 4.20
351 352 5.246429 GTCCCAGTCGATATTATCTTCCCTT 59.754 44.000 2.36 0.00 0.00 3.95
352 353 5.246203 TCCCAGTCGATATTATCTTCCCTTG 59.754 44.000 2.36 0.00 0.00 3.61
353 354 5.246203 CCCAGTCGATATTATCTTCCCTTGA 59.754 44.000 2.36 0.00 0.00 3.02
354 355 6.070538 CCCAGTCGATATTATCTTCCCTTGAT 60.071 42.308 2.36 0.00 0.00 2.57
355 356 7.390027 CCAGTCGATATTATCTTCCCTTGATT 58.610 38.462 2.36 0.00 0.00 2.57
356 357 7.880195 CCAGTCGATATTATCTTCCCTTGATTT 59.120 37.037 2.36 0.00 0.00 2.17
357 358 9.277783 CAGTCGATATTATCTTCCCTTGATTTT 57.722 33.333 2.36 0.00 0.00 1.82
358 359 9.277783 AGTCGATATTATCTTCCCTTGATTTTG 57.722 33.333 2.36 0.00 0.00 2.44
359 360 9.273016 GTCGATATTATCTTCCCTTGATTTTGA 57.727 33.333 2.36 0.00 0.00 2.69
360 361 9.273016 TCGATATTATCTTCCCTTGATTTTGAC 57.727 33.333 2.36 0.00 0.00 3.18
361 362 9.277783 CGATATTATCTTCCCTTGATTTTGACT 57.722 33.333 2.36 0.00 0.00 3.41
364 365 8.884124 ATTATCTTCCCTTGATTTTGACTGAA 57.116 30.769 0.00 0.00 0.00 3.02
365 366 6.830873 ATCTTCCCTTGATTTTGACTGAAG 57.169 37.500 0.00 0.00 0.00 3.02
366 367 5.940617 TCTTCCCTTGATTTTGACTGAAGA 58.059 37.500 0.00 0.00 35.80 2.87
367 368 6.546484 TCTTCCCTTGATTTTGACTGAAGAT 58.454 36.000 0.00 0.00 33.89 2.40
368 369 6.656693 TCTTCCCTTGATTTTGACTGAAGATC 59.343 38.462 0.00 0.00 33.89 2.75
369 370 4.937620 TCCCTTGATTTTGACTGAAGATCG 59.062 41.667 0.00 0.00 0.00 3.69
370 371 4.697352 CCCTTGATTTTGACTGAAGATCGT 59.303 41.667 0.00 0.00 0.00 3.73
371 372 5.391310 CCCTTGATTTTGACTGAAGATCGTG 60.391 44.000 0.00 0.00 0.00 4.35
372 373 4.668576 TGATTTTGACTGAAGATCGTGC 57.331 40.909 0.00 0.00 0.00 5.34
373 374 4.064388 TGATTTTGACTGAAGATCGTGCA 58.936 39.130 0.00 0.00 0.00 4.57
374 375 4.514816 TGATTTTGACTGAAGATCGTGCAA 59.485 37.500 0.00 0.00 0.00 4.08
375 376 4.891627 TTTTGACTGAAGATCGTGCAAA 57.108 36.364 0.00 0.00 0.00 3.68
376 377 4.891627 TTTGACTGAAGATCGTGCAAAA 57.108 36.364 0.00 0.00 0.00 2.44
377 378 4.891627 TTGACTGAAGATCGTGCAAAAA 57.108 36.364 0.00 0.00 0.00 1.94
433 434 8.728833 ACGTACTAGAATACTATATCACTTGGC 58.271 37.037 0.00 0.00 0.00 4.52
434 435 8.948145 CGTACTAGAATACTATATCACTTGGCT 58.052 37.037 0.00 0.00 0.00 4.75
440 441 9.594936 AGAATACTATATCACTTGGCTTAGACT 57.405 33.333 0.00 0.00 0.00 3.24
442 443 9.988815 AATACTATATCACTTGGCTTAGACTTG 57.011 33.333 0.00 0.00 0.00 3.16
443 444 6.821388 ACTATATCACTTGGCTTAGACTTGG 58.179 40.000 0.00 0.00 0.00 3.61
444 445 5.700402 ATATCACTTGGCTTAGACTTGGT 57.300 39.130 0.00 0.00 0.00 3.67
445 446 3.857157 TCACTTGGCTTAGACTTGGTT 57.143 42.857 0.00 0.00 0.00 3.67
446 447 4.967084 TCACTTGGCTTAGACTTGGTTA 57.033 40.909 0.00 0.00 0.00 2.85
447 448 5.298989 TCACTTGGCTTAGACTTGGTTAA 57.701 39.130 0.00 0.00 0.00 2.01
448 449 5.305585 TCACTTGGCTTAGACTTGGTTAAG 58.694 41.667 0.00 0.00 39.86 1.85
460 461 5.615925 ACTTGGTTAAGTCTCAGTTGACT 57.384 39.130 0.00 0.00 43.53 3.41
461 462 5.360591 ACTTGGTTAAGTCTCAGTTGACTG 58.639 41.667 4.77 4.77 43.53 3.51
462 463 5.128827 ACTTGGTTAAGTCTCAGTTGACTGA 59.871 40.000 12.83 12.83 45.53 3.41
474 475 5.826601 CAGTTGACTGAGATCTAGCTACA 57.173 43.478 5.19 0.00 46.59 2.74
475 476 6.389830 CAGTTGACTGAGATCTAGCTACAT 57.610 41.667 5.19 0.00 46.59 2.29
476 477 6.437928 CAGTTGACTGAGATCTAGCTACATC 58.562 44.000 5.19 0.97 46.59 3.06
477 478 5.534654 AGTTGACTGAGATCTAGCTACATCC 59.465 44.000 5.47 0.00 0.00 3.51
478 479 5.317600 TGACTGAGATCTAGCTACATCCT 57.682 43.478 5.47 0.00 0.00 3.24
479 480 5.700183 TGACTGAGATCTAGCTACATCCTT 58.300 41.667 5.47 0.00 0.00 3.36
480 481 6.842676 TGACTGAGATCTAGCTACATCCTTA 58.157 40.000 5.47 0.00 0.00 2.69
481 482 7.465960 TGACTGAGATCTAGCTACATCCTTAT 58.534 38.462 5.47 0.00 0.00 1.73
482 483 8.606830 TGACTGAGATCTAGCTACATCCTTATA 58.393 37.037 5.47 0.00 0.00 0.98
483 484 9.627123 GACTGAGATCTAGCTACATCCTTATAT 57.373 37.037 5.47 0.00 0.00 0.86
484 485 9.989296 ACTGAGATCTAGCTACATCCTTATATT 57.011 33.333 5.47 0.00 0.00 1.28
497 498 8.848474 ACATCCTTATATTAAAGATCCAACGG 57.152 34.615 0.00 0.00 0.00 4.44
498 499 7.390718 ACATCCTTATATTAAAGATCCAACGGC 59.609 37.037 0.00 0.00 0.00 5.68
499 500 7.074653 TCCTTATATTAAAGATCCAACGGCT 57.925 36.000 0.00 0.00 0.00 5.52
500 501 6.934645 TCCTTATATTAAAGATCCAACGGCTG 59.065 38.462 0.00 0.00 0.00 4.85
501 502 6.348540 CCTTATATTAAAGATCCAACGGCTGC 60.349 42.308 0.00 0.00 0.00 5.25
502 503 2.489938 TTAAAGATCCAACGGCTGCT 57.510 45.000 0.00 0.00 0.00 4.24
503 504 2.024176 TAAAGATCCAACGGCTGCTC 57.976 50.000 0.00 0.00 0.00 4.26
504 505 0.326264 AAAGATCCAACGGCTGCTCT 59.674 50.000 0.00 0.00 0.00 4.09
505 506 1.195115 AAGATCCAACGGCTGCTCTA 58.805 50.000 0.00 0.00 0.00 2.43
506 507 0.461961 AGATCCAACGGCTGCTCTAC 59.538 55.000 0.00 0.00 0.00 2.59
520 521 2.231478 TGCTCTACTTTCTCCTTCCACG 59.769 50.000 0.00 0.00 0.00 4.94
536 537 5.474189 CCTTCCACGAAATTAACTTACCCAA 59.526 40.000 0.00 0.00 0.00 4.12
572 573 9.713713 TTAGTCAACTTACATGTAACTATTGCA 57.286 29.630 14.35 7.15 0.00 4.08
573 574 8.256611 AGTCAACTTACATGTAACTATTGCAG 57.743 34.615 14.35 4.92 0.00 4.41
574 575 8.094548 AGTCAACTTACATGTAACTATTGCAGA 58.905 33.333 14.35 4.02 0.00 4.26
575 576 8.717821 GTCAACTTACATGTAACTATTGCAGAA 58.282 33.333 14.35 2.09 0.00 3.02
594 595 7.378181 TGCAGAAGGAAGGAAAAACATATTTC 58.622 34.615 0.00 0.00 38.34 2.17
729 737 1.525077 GGACACGCACCAAACTCCA 60.525 57.895 0.00 0.00 0.00 3.86
730 738 1.098712 GGACACGCACCAAACTCCAA 61.099 55.000 0.00 0.00 0.00 3.53
731 739 0.736053 GACACGCACCAAACTCCAAA 59.264 50.000 0.00 0.00 0.00 3.28
732 740 0.738389 ACACGCACCAAACTCCAAAG 59.262 50.000 0.00 0.00 0.00 2.77
733 741 0.738389 CACGCACCAAACTCCAAAGT 59.262 50.000 0.00 0.00 37.32 2.66
734 742 1.021968 ACGCACCAAACTCCAAAGTC 58.978 50.000 0.00 0.00 33.48 3.01
735 743 0.310854 CGCACCAAACTCCAAAGTCC 59.689 55.000 0.00 0.00 33.48 3.85
942 1022 0.907486 CTTGCTCATCCCTCTGGTGA 59.093 55.000 0.00 0.00 0.00 4.02
1093 1182 4.148825 GCACGTCTCCCTCGCCAT 62.149 66.667 0.00 0.00 0.00 4.40
1618 1710 4.641645 CCAAGGTGGGCGTGCTCA 62.642 66.667 0.00 0.00 32.67 4.26
1640 1732 0.941542 CGAGTGGTTTTCGCCAAGAA 59.058 50.000 0.00 0.00 40.68 2.52
1729 1845 1.823470 GCACAGGAGCAACACCACA 60.823 57.895 0.00 0.00 0.00 4.17
1828 1947 3.750130 CAGACAGCATATCAAGGCCATAC 59.250 47.826 5.01 0.00 31.05 2.39
1969 2466 6.918569 GCACAGATACGTCATACATAGTTCTT 59.081 38.462 0.00 0.00 0.00 2.52
1975 2472 5.103000 ACGTCATACATAGTTCTTGAGTGC 58.897 41.667 0.00 0.00 0.00 4.40
2085 2582 2.125912 CGAGGACGACTTGGCCAG 60.126 66.667 5.11 2.72 42.66 4.85
2116 2613 0.766131 TAAAGGCCACCGTGAAGGAA 59.234 50.000 5.01 0.00 45.00 3.36
2168 2665 2.038813 TCCCGCACCTCTCCATGA 59.961 61.111 0.00 0.00 0.00 3.07
2188 2685 2.621000 GAATGCGACATCGACGGC 59.379 61.111 5.26 0.00 43.02 5.68
2203 2700 1.301479 CGGCTATAAAGTCCCCGCC 60.301 63.158 0.00 0.00 31.87 6.13
2204 2701 1.834301 GGCTATAAAGTCCCCGCCA 59.166 57.895 0.00 0.00 37.48 5.69
2205 2702 0.250338 GGCTATAAAGTCCCCGCCAG 60.250 60.000 0.00 0.00 37.48 4.85
2407 2904 1.741732 GCGTCTGTGGAGATCATGCTT 60.742 52.381 0.00 0.00 0.00 3.91
2533 3030 5.223449 AGTTATTTCTTGTCCCGAGAACA 57.777 39.130 0.00 0.00 34.06 3.18
2534 3031 4.995487 AGTTATTTCTTGTCCCGAGAACAC 59.005 41.667 0.00 0.00 34.06 3.32
2707 3204 3.371034 TCATCCCATTTCTAGTCCACGA 58.629 45.455 0.00 0.00 0.00 4.35
2880 3384 8.919145 CCTCACTTATATCCACTCTAAGACTTT 58.081 37.037 0.00 0.00 0.00 2.66
2927 3431 0.541863 ACCATCCTTTCTACCGGCAG 59.458 55.000 0.00 0.00 0.00 4.85
3065 3619 2.318908 ACTACCTACCACCAACGACAA 58.681 47.619 0.00 0.00 0.00 3.18
3097 3651 1.612463 GGACGACGCCCTTATCATAGT 59.388 52.381 0.00 0.00 0.00 2.12
3117 3671 5.741962 AGTTAAGTTCTCACCCTAAGACC 57.258 43.478 0.00 0.00 0.00 3.85
3193 3747 1.741394 CGTGCTTGGCATCAGATCTCA 60.741 52.381 0.00 0.00 41.91 3.27
3252 3806 1.279271 CCCAAGGAGACGACAGGAATT 59.721 52.381 0.00 0.00 0.00 2.17
3319 3873 1.398692 GATCGGAGCTCAGAAGACCT 58.601 55.000 20.56 3.53 0.00 3.85
3334 3888 5.245075 CAGAAGACCTACTCAAAGAAGAGGT 59.755 44.000 0.00 0.00 43.28 3.85
3336 3890 3.259625 AGACCTACTCAAAGAAGAGGTGC 59.740 47.826 0.00 0.00 40.65 5.01
3350 3904 3.503363 GTGCTGTCATCCGCCTGC 61.503 66.667 0.00 0.00 0.00 4.85
3398 3952 4.582240 CCCTAACCTAAACTACTAGTCGGG 59.418 50.000 0.00 0.00 0.00 5.14
3456 4011 1.448717 GAGCGCAAGAAGAGGGGAC 60.449 63.158 11.47 0.00 43.02 4.46
3460 4015 2.125512 CAAGAAGAGGGGACGCGG 60.126 66.667 12.47 0.00 34.13 6.46
3505 4060 3.916989 AGGGACCTTCTTTGGTTCATAGT 59.083 43.478 0.00 0.00 41.00 2.12
3725 4286 4.767409 AGGCCTCAAAGAACATTTTCCTAC 59.233 41.667 0.00 0.00 31.28 3.18
3767 4328 7.756614 AGAATTCCTAAAAGTTCCTGTAACCT 58.243 34.615 0.65 0.00 39.03 3.50
3783 4344 3.682592 AACCTAAAGGGGCCCTAAATC 57.317 47.619 29.08 3.84 40.27 2.17
3792 4353 2.241430 GGGGCCCTAAATCAGTAACAGT 59.759 50.000 24.38 0.00 0.00 3.55
3819 4380 8.908903 TGAAGATCTCTTACTCCTAAATGAGAC 58.091 37.037 0.00 0.00 36.11 3.36
3950 5349 2.803492 CGTCTGAGCCCAGTTATAAGCC 60.803 54.545 0.00 0.00 41.16 4.35
3990 5389 2.619697 TGGGCAATCCAGAAAATCCA 57.380 45.000 0.00 0.00 41.46 3.41
3991 5390 2.899975 TGGGCAATCCAGAAAATCCAA 58.100 42.857 0.00 0.00 41.46 3.53
3992 5391 2.833338 TGGGCAATCCAGAAAATCCAAG 59.167 45.455 0.00 0.00 41.46 3.61
3993 5392 2.419159 GGGCAATCCAGAAAATCCAAGC 60.419 50.000 0.00 0.00 35.00 4.01
3994 5393 2.419159 GGCAATCCAGAAAATCCAAGCC 60.419 50.000 0.00 0.00 0.00 4.35
3995 5394 2.419159 GCAATCCAGAAAATCCAAGCCC 60.419 50.000 0.00 0.00 0.00 5.19
3996 5395 3.102204 CAATCCAGAAAATCCAAGCCCT 58.898 45.455 0.00 0.00 0.00 5.19
3997 5396 2.514458 TCCAGAAAATCCAAGCCCTC 57.486 50.000 0.00 0.00 0.00 4.30
3998 5397 1.098050 CCAGAAAATCCAAGCCCTCG 58.902 55.000 0.00 0.00 0.00 4.63
3999 5398 0.453390 CAGAAAATCCAAGCCCTCGC 59.547 55.000 0.00 0.00 0.00 5.03
4038 5437 2.474410 AACTCTAAGCCCAACCTTCG 57.526 50.000 0.00 0.00 0.00 3.79
4064 5488 1.767681 GGCAAATATTCCCCCATTGCA 59.232 47.619 10.48 0.00 46.12 4.08
4098 5522 2.352805 GGTGCCACCTTCTCCCTG 59.647 66.667 6.63 0.00 34.73 4.45
4142 5568 1.414181 AGCCATCGAACATACTCCCAG 59.586 52.381 0.00 0.00 0.00 4.45
4143 5569 1.871080 CCATCGAACATACTCCCAGC 58.129 55.000 0.00 0.00 0.00 4.85
4144 5570 1.541233 CCATCGAACATACTCCCAGCC 60.541 57.143 0.00 0.00 0.00 4.85
4145 5571 0.759346 ATCGAACATACTCCCAGCCC 59.241 55.000 0.00 0.00 0.00 5.19
4146 5572 1.146263 CGAACATACTCCCAGCCCC 59.854 63.158 0.00 0.00 0.00 5.80
4240 5667 0.960364 GAGTTGGGCTGCCGAAATCA 60.960 55.000 30.13 13.64 36.59 2.57
4348 5790 7.120923 ACTCGCCCAGTTCTCTATTTTATTA 57.879 36.000 0.00 0.00 26.56 0.98
4363 5901 9.745880 TCTATTTTATTAGTGTTCTCGCTTAGG 57.254 33.333 0.00 0.00 35.84 2.69
4367 5905 8.644318 TTTATTAGTGTTCTCGCTTAGGAATC 57.356 34.615 0.00 0.00 35.84 2.52
4369 5907 2.753452 AGTGTTCTCGCTTAGGAATCGA 59.247 45.455 0.00 0.00 0.00 3.59
4390 5928 3.340928 AGGTGGAGTTAACCGCAATTAC 58.659 45.455 0.88 0.00 42.89 1.89
4392 5930 4.223477 AGGTGGAGTTAACCGCAATTACTA 59.777 41.667 0.88 0.00 42.89 1.82
4394 5932 5.173664 GTGGAGTTAACCGCAATTACTAGT 58.826 41.667 0.00 0.00 39.86 2.57
4395 5933 6.332630 GTGGAGTTAACCGCAATTACTAGTA 58.667 40.000 0.88 0.00 39.86 1.82
4396 5934 6.982724 GTGGAGTTAACCGCAATTACTAGTAT 59.017 38.462 2.79 0.00 39.86 2.12
4397 5935 7.493645 GTGGAGTTAACCGCAATTACTAGTATT 59.506 37.037 2.79 0.00 39.86 1.89
4398 5936 8.042515 TGGAGTTAACCGCAATTACTAGTATTT 58.957 33.333 2.79 3.81 0.00 1.40
4399 5937 8.333186 GGAGTTAACCGCAATTACTAGTATTTG 58.667 37.037 23.91 23.91 32.54 2.32
4400 5938 9.090692 GAGTTAACCGCAATTACTAGTATTTGA 57.909 33.333 29.00 13.45 31.59 2.69
4401 5939 8.876790 AGTTAACCGCAATTACTAGTATTTGAC 58.123 33.333 29.00 21.40 31.59 3.18
4402 5940 8.876790 GTTAACCGCAATTACTAGTATTTGACT 58.123 33.333 29.00 16.96 42.69 3.41
4429 5969 6.796705 TGTTAAGCCAAAAGTTAGAGCTAC 57.203 37.500 0.00 0.00 32.39 3.58
4441 5981 4.467795 AGTTAGAGCTACTGATCCTGCAAA 59.532 41.667 0.00 0.00 0.00 3.68
4452 5992 1.032014 TCCTGCAAACTTTGTCAGCC 58.968 50.000 15.17 0.00 35.16 4.85
4456 5996 1.824230 TGCAAACTTTGTCAGCCAAGT 59.176 42.857 3.48 0.00 33.75 3.16
4457 5997 3.020274 TGCAAACTTTGTCAGCCAAGTA 58.980 40.909 3.48 0.00 33.75 2.24
4462 6002 2.706190 ACTTTGTCAGCCAAGTAGACCT 59.294 45.455 0.00 0.00 33.75 3.85
4463 6003 2.839486 TTGTCAGCCAAGTAGACCTG 57.161 50.000 0.00 0.00 0.00 4.00
4465 6005 1.344438 TGTCAGCCAAGTAGACCTGTG 59.656 52.381 0.00 0.00 0.00 3.66
4506 6046 5.458891 TCTTCGTACAGCTCTTAACAAGTC 58.541 41.667 0.00 0.00 0.00 3.01
4513 6053 4.282195 ACAGCTCTTAACAAGTCTGCTAGT 59.718 41.667 0.00 0.00 35.33 2.57
4520 6060 8.813643 TCTTAACAAGTCTGCTAGTTAGAAAC 57.186 34.615 1.16 0.00 0.00 2.78
4521 6061 8.418662 TCTTAACAAGTCTGCTAGTTAGAAACA 58.581 33.333 1.16 0.00 0.00 2.83
4530 6070 7.171678 GTCTGCTAGTTAGAAACACAAACATCT 59.828 37.037 1.16 0.00 0.00 2.90
4531 6071 7.171508 TCTGCTAGTTAGAAACACAAACATCTG 59.828 37.037 0.00 0.00 0.00 2.90
4532 6072 6.989759 TGCTAGTTAGAAACACAAACATCTGA 59.010 34.615 0.00 0.00 0.00 3.27
4533 6073 7.497579 TGCTAGTTAGAAACACAAACATCTGAA 59.502 33.333 0.00 0.00 0.00 3.02
4534 6074 8.507249 GCTAGTTAGAAACACAAACATCTGAAT 58.493 33.333 0.00 0.00 0.00 2.57
4628 6172 4.019174 AGTTGATGTGGGCTTATCCAAAG 58.981 43.478 0.00 0.00 38.72 2.77
4717 6261 4.607293 AGATGACCTTATCGCTGCATTA 57.393 40.909 0.00 0.00 32.33 1.90
4811 6355 0.821711 TTGGGTTCCCGTCAAAGCTG 60.822 55.000 3.27 0.00 0.00 4.24
5006 6550 6.914665 TGATTGTGGGATCTCTCCATAAAAT 58.085 36.000 0.00 0.00 44.08 1.82
5170 6732 8.865090 CATATATATTGGTAGATCAGGGAGGTC 58.135 40.741 0.00 0.00 0.00 3.85
5402 6975 2.223377 CCTTCCAGTAAACGAACACTGC 59.777 50.000 8.78 0.00 40.69 4.40
5522 7096 1.817099 CCTGCAGCTCTTAAGGGCG 60.817 63.158 21.42 16.61 0.00 6.13
5535 7109 0.177836 AAGGGCGTGCAAAGCTTTTT 59.822 45.000 9.53 0.00 42.50 1.94
5636 7210 0.893727 GGAAATGGTTGGCCGACAGT 60.894 55.000 24.82 9.50 37.67 3.55
5638 7212 0.110486 AAATGGTTGGCCGACAGTCT 59.890 50.000 24.82 3.38 37.67 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.528078 ACTTTCTTCCTTATCCCTTCCCC 59.472 47.826 0.00 0.00 0.00 4.81
1 2 4.227527 TCACTTTCTTCCTTATCCCTTCCC 59.772 45.833 0.00 0.00 0.00 3.97
2 3 5.432645 CTCACTTTCTTCCTTATCCCTTCC 58.567 45.833 0.00 0.00 0.00 3.46
3 4 4.878971 GCTCACTTTCTTCCTTATCCCTTC 59.121 45.833 0.00 0.00 0.00 3.46
4 5 4.624125 CGCTCACTTTCTTCCTTATCCCTT 60.624 45.833 0.00 0.00 0.00 3.95
5 6 3.118592 CGCTCACTTTCTTCCTTATCCCT 60.119 47.826 0.00 0.00 0.00 4.20
6 7 3.198872 CGCTCACTTTCTTCCTTATCCC 58.801 50.000 0.00 0.00 0.00 3.85
7 8 3.863041 ACGCTCACTTTCTTCCTTATCC 58.137 45.455 0.00 0.00 0.00 2.59
8 9 3.548268 CGACGCTCACTTTCTTCCTTATC 59.452 47.826 0.00 0.00 0.00 1.75
9 10 3.512680 CGACGCTCACTTTCTTCCTTAT 58.487 45.455 0.00 0.00 0.00 1.73
10 11 2.925306 GCGACGCTCACTTTCTTCCTTA 60.925 50.000 13.73 0.00 0.00 2.69
11 12 1.784525 CGACGCTCACTTTCTTCCTT 58.215 50.000 0.00 0.00 0.00 3.36
12 13 0.667792 GCGACGCTCACTTTCTTCCT 60.668 55.000 13.73 0.00 0.00 3.36
13 14 0.944311 TGCGACGCTCACTTTCTTCC 60.944 55.000 22.08 0.00 0.00 3.46
14 15 1.071605 ATGCGACGCTCACTTTCTTC 58.928 50.000 22.08 0.00 0.00 2.87
15 16 0.792640 CATGCGACGCTCACTTTCTT 59.207 50.000 22.08 0.00 0.00 2.52
16 17 0.038251 TCATGCGACGCTCACTTTCT 60.038 50.000 22.08 0.00 0.00 2.52
17 18 1.002366 ATCATGCGACGCTCACTTTC 58.998 50.000 22.08 0.00 0.00 2.62
18 19 1.002366 GATCATGCGACGCTCACTTT 58.998 50.000 22.08 0.77 0.00 2.66
19 20 0.807667 GGATCATGCGACGCTCACTT 60.808 55.000 22.08 1.91 0.00 3.16
20 21 1.227089 GGATCATGCGACGCTCACT 60.227 57.895 22.08 3.25 0.00 3.41
21 22 1.485838 CTGGATCATGCGACGCTCAC 61.486 60.000 22.08 7.81 0.00 3.51
22 23 1.227060 CTGGATCATGCGACGCTCA 60.227 57.895 22.08 1.02 0.00 4.26
23 24 0.319383 ATCTGGATCATGCGACGCTC 60.319 55.000 22.08 9.85 0.00 5.03
24 25 0.319383 GATCTGGATCATGCGACGCT 60.319 55.000 22.08 0.00 37.74 5.07
25 26 0.598419 TGATCTGGATCATGCGACGC 60.598 55.000 14.19 14.19 42.42 5.19
26 27 1.856802 TTGATCTGGATCATGCGACG 58.143 50.000 13.14 0.00 46.12 5.12
27 28 3.811497 TCATTTGATCTGGATCATGCGAC 59.189 43.478 13.14 0.00 46.12 5.19
28 29 4.075963 TCATTTGATCTGGATCATGCGA 57.924 40.909 13.14 7.78 46.12 5.10
29 30 4.823790 TTCATTTGATCTGGATCATGCG 57.176 40.909 13.14 5.92 46.12 4.73
30 31 6.475727 CAGTTTTCATTTGATCTGGATCATGC 59.524 38.462 13.14 0.00 46.12 4.06
31 32 7.768240 TCAGTTTTCATTTGATCTGGATCATG 58.232 34.615 13.14 10.02 46.12 3.07
32 33 7.416438 GCTCAGTTTTCATTTGATCTGGATCAT 60.416 37.037 13.14 0.00 46.12 2.45
33 34 6.127814 GCTCAGTTTTCATTTGATCTGGATCA 60.128 38.462 8.96 8.96 45.30 2.92
34 35 6.264088 GCTCAGTTTTCATTTGATCTGGATC 58.736 40.000 3.83 3.83 38.29 3.36
35 36 5.163683 CGCTCAGTTTTCATTTGATCTGGAT 60.164 40.000 0.00 0.00 0.00 3.41
36 37 4.154737 CGCTCAGTTTTCATTTGATCTGGA 59.845 41.667 0.00 0.00 0.00 3.86
37 38 4.083110 ACGCTCAGTTTTCATTTGATCTGG 60.083 41.667 0.00 0.00 0.00 3.86
38 39 5.039480 ACGCTCAGTTTTCATTTGATCTG 57.961 39.130 0.00 0.00 0.00 2.90
39 40 4.999950 AGACGCTCAGTTTTCATTTGATCT 59.000 37.500 0.00 0.00 0.00 2.75
40 41 5.084722 CAGACGCTCAGTTTTCATTTGATC 58.915 41.667 0.00 0.00 0.00 2.92
41 42 4.083110 CCAGACGCTCAGTTTTCATTTGAT 60.083 41.667 0.00 0.00 0.00 2.57
42 43 3.250762 CCAGACGCTCAGTTTTCATTTGA 59.749 43.478 0.00 0.00 0.00 2.69
43 44 3.558505 CCAGACGCTCAGTTTTCATTTG 58.441 45.455 0.00 0.00 0.00 2.32
44 45 2.030805 GCCAGACGCTCAGTTTTCATTT 60.031 45.455 0.00 0.00 0.00 2.32
45 46 1.537202 GCCAGACGCTCAGTTTTCATT 59.463 47.619 0.00 0.00 0.00 2.57
46 47 1.160137 GCCAGACGCTCAGTTTTCAT 58.840 50.000 0.00 0.00 0.00 2.57
47 48 0.884704 GGCCAGACGCTCAGTTTTCA 60.885 55.000 0.00 0.00 37.74 2.69
48 49 1.869690 GGCCAGACGCTCAGTTTTC 59.130 57.895 0.00 0.00 37.74 2.29
49 50 1.961277 CGGCCAGACGCTCAGTTTT 60.961 57.895 2.24 0.00 37.74 2.43
50 51 2.357517 CGGCCAGACGCTCAGTTT 60.358 61.111 2.24 0.00 37.74 2.66
51 52 3.165160 AACGGCCAGACGCTCAGTT 62.165 57.895 2.24 0.00 37.74 3.16
52 53 3.616721 AACGGCCAGACGCTCAGT 61.617 61.111 2.24 0.00 37.74 3.41
53 54 3.114616 CAACGGCCAGACGCTCAG 61.115 66.667 2.24 0.00 37.74 3.35
54 55 3.611674 TCAACGGCCAGACGCTCA 61.612 61.111 2.24 0.00 37.74 4.26
55 56 3.112709 GTCAACGGCCAGACGCTC 61.113 66.667 2.24 0.00 37.74 5.03
56 57 2.933878 TTTGTCAACGGCCAGACGCT 62.934 55.000 2.24 0.00 37.58 5.07
57 58 2.054140 TTTTGTCAACGGCCAGACGC 62.054 55.000 2.24 0.00 37.58 5.19
58 59 0.316689 GTTTTGTCAACGGCCAGACG 60.317 55.000 2.24 0.00 37.58 4.18
59 60 0.736053 TGTTTTGTCAACGGCCAGAC 59.264 50.000 2.24 8.36 35.37 3.51
60 61 1.464734 TTGTTTTGTCAACGGCCAGA 58.535 45.000 2.24 0.00 0.00 3.86
61 62 2.285827 TTTGTTTTGTCAACGGCCAG 57.714 45.000 2.24 0.00 0.00 4.85
62 63 2.428890 AGATTTGTTTTGTCAACGGCCA 59.571 40.909 2.24 0.00 0.00 5.36
63 64 3.092334 AGATTTGTTTTGTCAACGGCC 57.908 42.857 0.00 0.00 0.00 6.13
64 65 5.689961 ACATTAGATTTGTTTTGTCAACGGC 59.310 36.000 0.00 0.00 0.00 5.68
65 66 7.357206 CGAACATTAGATTTGTTTTGTCAACGG 60.357 37.037 0.00 0.00 37.43 4.44
66 67 7.165154 ACGAACATTAGATTTGTTTTGTCAACG 59.835 33.333 0.00 0.00 37.43 4.10
67 68 8.335256 ACGAACATTAGATTTGTTTTGTCAAC 57.665 30.769 0.00 0.00 37.43 3.18
68 69 8.918961 AACGAACATTAGATTTGTTTTGTCAA 57.081 26.923 0.00 0.00 37.43 3.18
144 145 9.512435 GAGGATCAAATGAACATTAGATGTTTG 57.488 33.333 7.64 3.13 44.23 2.93
176 177 8.863086 TCCGCTGTAGGTGTTATTTACTAATAT 58.137 33.333 0.00 0.00 0.00 1.28
177 178 8.236585 TCCGCTGTAGGTGTTATTTACTAATA 57.763 34.615 0.00 0.00 0.00 0.98
178 179 7.116075 TCCGCTGTAGGTGTTATTTACTAAT 57.884 36.000 0.00 0.00 0.00 1.73
179 180 6.153340 ACTCCGCTGTAGGTGTTATTTACTAA 59.847 38.462 0.00 0.00 34.69 2.24
180 181 5.653769 ACTCCGCTGTAGGTGTTATTTACTA 59.346 40.000 0.00 0.00 34.69 1.82
181 182 4.465305 ACTCCGCTGTAGGTGTTATTTACT 59.535 41.667 0.00 0.00 34.69 2.24
182 183 4.565564 CACTCCGCTGTAGGTGTTATTTAC 59.434 45.833 0.00 0.00 36.01 2.01
183 184 4.221262 ACACTCCGCTGTAGGTGTTATTTA 59.779 41.667 0.00 0.00 39.47 1.40
184 185 3.007614 ACACTCCGCTGTAGGTGTTATTT 59.992 43.478 0.00 0.00 39.47 1.40
185 186 2.565834 ACACTCCGCTGTAGGTGTTATT 59.434 45.455 0.00 0.00 39.47 1.40
186 187 2.176889 ACACTCCGCTGTAGGTGTTAT 58.823 47.619 0.00 0.00 39.47 1.89
187 188 1.624336 ACACTCCGCTGTAGGTGTTA 58.376 50.000 0.00 0.00 39.47 2.41
188 189 0.756903 AACACTCCGCTGTAGGTGTT 59.243 50.000 0.00 0.00 44.61 3.32
189 190 0.033504 CAACACTCCGCTGTAGGTGT 59.966 55.000 0.00 0.00 43.51 4.16
190 191 0.033504 ACAACACTCCGCTGTAGGTG 59.966 55.000 0.00 0.00 35.99 4.00
191 192 0.033504 CACAACACTCCGCTGTAGGT 59.966 55.000 0.00 0.00 0.00 3.08
192 193 0.033504 ACACAACACTCCGCTGTAGG 59.966 55.000 0.00 0.00 0.00 3.18
193 194 1.865865 AACACAACACTCCGCTGTAG 58.134 50.000 0.00 0.00 0.00 2.74
194 195 3.671008 ATAACACAACACTCCGCTGTA 57.329 42.857 0.00 0.00 0.00 2.74
195 196 2.543777 ATAACACAACACTCCGCTGT 57.456 45.000 0.00 0.00 0.00 4.40
196 197 3.896648 AAATAACACAACACTCCGCTG 57.103 42.857 0.00 0.00 0.00 5.18
197 198 3.880490 TCAAAATAACACAACACTCCGCT 59.120 39.130 0.00 0.00 0.00 5.52
198 199 4.217754 TCAAAATAACACAACACTCCGC 57.782 40.909 0.00 0.00 0.00 5.54
199 200 6.055231 TCTTCAAAATAACACAACACTCCG 57.945 37.500 0.00 0.00 0.00 4.63
217 218 8.939929 GCAACTTGCATATAGCTTATATCTTCA 58.060 33.333 8.97 0.00 44.26 3.02
234 235 7.861372 CCAAAATAAATTTTCATGCAACTTGCA 59.139 29.630 18.60 18.60 46.54 4.08
235 236 7.861872 ACCAAAATAAATTTTCATGCAACTTGC 59.138 29.630 6.82 6.82 39.75 4.01
236 237 9.733219 AACCAAAATAAATTTTCATGCAACTTG 57.267 25.926 0.00 0.00 37.86 3.16
250 251 9.981114 CCAGAAGTTGACTTAACCAAAATAAAT 57.019 29.630 0.00 0.00 40.24 1.40
251 252 7.923878 GCCAGAAGTTGACTTAACCAAAATAAA 59.076 33.333 0.00 0.00 40.24 1.40
252 253 7.068839 TGCCAGAAGTTGACTTAACCAAAATAA 59.931 33.333 0.00 0.00 40.24 1.40
253 254 6.547880 TGCCAGAAGTTGACTTAACCAAAATA 59.452 34.615 0.00 0.00 40.24 1.40
254 255 5.362430 TGCCAGAAGTTGACTTAACCAAAAT 59.638 36.000 0.00 0.00 40.24 1.82
255 256 4.707448 TGCCAGAAGTTGACTTAACCAAAA 59.293 37.500 0.00 0.00 40.24 2.44
256 257 4.274147 TGCCAGAAGTTGACTTAACCAAA 58.726 39.130 0.00 0.00 40.24 3.28
257 258 3.892284 TGCCAGAAGTTGACTTAACCAA 58.108 40.909 0.00 0.00 40.24 3.67
258 259 3.569194 TGCCAGAAGTTGACTTAACCA 57.431 42.857 0.00 0.00 40.24 3.67
259 260 5.453567 AATTGCCAGAAGTTGACTTAACC 57.546 39.130 0.00 0.00 40.24 2.85
260 261 7.593825 ACATAATTGCCAGAAGTTGACTTAAC 58.406 34.615 0.00 0.00 36.11 2.01
261 262 7.759489 ACATAATTGCCAGAAGTTGACTTAA 57.241 32.000 0.00 0.00 36.11 1.85
262 263 7.759489 AACATAATTGCCAGAAGTTGACTTA 57.241 32.000 0.00 0.00 36.11 2.24
263 264 6.655078 AACATAATTGCCAGAAGTTGACTT 57.345 33.333 0.00 0.00 39.23 3.01
264 265 7.230510 TGTTAACATAATTGCCAGAAGTTGACT 59.769 33.333 3.59 0.00 0.00 3.41
265 266 7.367285 TGTTAACATAATTGCCAGAAGTTGAC 58.633 34.615 3.59 0.00 0.00 3.18
266 267 7.230510 ACTGTTAACATAATTGCCAGAAGTTGA 59.769 33.333 9.13 0.00 0.00 3.18
267 268 7.370383 ACTGTTAACATAATTGCCAGAAGTTG 58.630 34.615 9.13 0.00 0.00 3.16
268 269 7.524717 ACTGTTAACATAATTGCCAGAAGTT 57.475 32.000 9.13 0.00 0.00 2.66
269 270 7.524717 AACTGTTAACATAATTGCCAGAAGT 57.475 32.000 9.13 0.00 0.00 3.01
270 271 8.702438 CAAAACTGTTAACATAATTGCCAGAAG 58.298 33.333 9.13 0.00 0.00 2.85
271 272 7.170658 GCAAAACTGTTAACATAATTGCCAGAA 59.829 33.333 26.10 0.00 34.32 3.02
272 273 6.644592 GCAAAACTGTTAACATAATTGCCAGA 59.355 34.615 26.10 0.00 34.32 3.86
273 274 6.646240 AGCAAAACTGTTAACATAATTGCCAG 59.354 34.615 29.34 13.36 37.70 4.85
274 275 6.520272 AGCAAAACTGTTAACATAATTGCCA 58.480 32.000 29.34 3.56 37.70 4.92
275 276 8.527567 TTAGCAAAACTGTTAACATAATTGCC 57.472 30.769 29.34 19.72 37.70 4.52
276 277 9.191995 ACTTAGCAAAACTGTTAACATAATTGC 57.808 29.630 27.63 27.63 37.47 3.56
281 282 9.431887 CCTAGACTTAGCAAAACTGTTAACATA 57.568 33.333 9.13 0.00 0.00 2.29
282 283 7.937394 ACCTAGACTTAGCAAAACTGTTAACAT 59.063 33.333 9.13 0.00 0.00 2.71
283 284 7.277396 ACCTAGACTTAGCAAAACTGTTAACA 58.723 34.615 8.28 8.28 0.00 2.41
284 285 7.725818 ACCTAGACTTAGCAAAACTGTTAAC 57.274 36.000 0.00 0.00 0.00 2.01
285 286 7.988599 TCAACCTAGACTTAGCAAAACTGTTAA 59.011 33.333 0.00 0.00 0.00 2.01
286 287 7.440255 GTCAACCTAGACTTAGCAAAACTGTTA 59.560 37.037 0.00 0.00 35.65 2.41
287 288 6.260271 GTCAACCTAGACTTAGCAAAACTGTT 59.740 38.462 0.00 0.00 35.65 3.16
288 289 5.758784 GTCAACCTAGACTTAGCAAAACTGT 59.241 40.000 0.00 0.00 35.65 3.55
289 290 5.992217 AGTCAACCTAGACTTAGCAAAACTG 59.008 40.000 0.00 0.00 46.26 3.16
290 291 6.176014 AGTCAACCTAGACTTAGCAAAACT 57.824 37.500 0.00 0.00 46.26 2.66
291 292 7.871463 TCTTAGTCAACCTAGACTTAGCAAAAC 59.129 37.037 1.61 0.00 46.26 2.43
292 293 7.871463 GTCTTAGTCAACCTAGACTTAGCAAAA 59.129 37.037 1.61 0.00 46.26 2.44
293 294 7.232941 AGTCTTAGTCAACCTAGACTTAGCAAA 59.767 37.037 1.61 0.00 46.26 3.68
294 295 6.720288 AGTCTTAGTCAACCTAGACTTAGCAA 59.280 38.462 1.61 0.00 46.26 3.91
295 296 6.246919 AGTCTTAGTCAACCTAGACTTAGCA 58.753 40.000 1.61 0.00 46.26 3.49
296 297 6.762702 AGTCTTAGTCAACCTAGACTTAGC 57.237 41.667 1.61 0.60 46.26 3.09
297 298 7.542824 GCAAAGTCTTAGTCAACCTAGACTTAG 59.457 40.741 19.46 3.13 46.26 2.18
298 299 7.232941 AGCAAAGTCTTAGTCAACCTAGACTTA 59.767 37.037 19.46 0.00 46.26 2.24
299 300 6.042208 AGCAAAGTCTTAGTCAACCTAGACTT 59.958 38.462 16.00 16.00 46.26 3.01
301 302 5.785243 AGCAAAGTCTTAGTCAACCTAGAC 58.215 41.667 0.00 0.00 38.81 2.59
302 303 7.178628 ACATAGCAAAGTCTTAGTCAACCTAGA 59.821 37.037 0.00 0.00 0.00 2.43
303 304 7.324178 ACATAGCAAAGTCTTAGTCAACCTAG 58.676 38.462 0.00 0.00 0.00 3.02
304 305 7.241042 ACATAGCAAAGTCTTAGTCAACCTA 57.759 36.000 0.00 0.00 0.00 3.08
305 306 6.115448 ACATAGCAAAGTCTTAGTCAACCT 57.885 37.500 0.00 0.00 0.00 3.50
306 307 5.351740 GGACATAGCAAAGTCTTAGTCAACC 59.648 44.000 0.00 0.00 35.18 3.77
307 308 5.351740 GGGACATAGCAAAGTCTTAGTCAAC 59.648 44.000 0.00 0.00 35.18 3.18
308 309 5.012664 TGGGACATAGCAAAGTCTTAGTCAA 59.987 40.000 0.00 0.00 35.18 3.18
309 310 4.530553 TGGGACATAGCAAAGTCTTAGTCA 59.469 41.667 0.00 0.00 35.18 3.41
310 311 5.086104 TGGGACATAGCAAAGTCTTAGTC 57.914 43.478 0.00 0.00 35.18 2.59
311 312 4.532521 ACTGGGACATAGCAAAGTCTTAGT 59.467 41.667 0.00 0.00 38.20 2.24
312 313 5.091261 ACTGGGACATAGCAAAGTCTTAG 57.909 43.478 0.00 0.00 38.20 2.18
313 314 4.381612 CGACTGGGACATAGCAAAGTCTTA 60.382 45.833 0.00 0.00 38.20 2.10
314 315 3.617531 CGACTGGGACATAGCAAAGTCTT 60.618 47.826 0.00 0.00 38.20 3.01
315 316 2.093973 CGACTGGGACATAGCAAAGTCT 60.094 50.000 0.00 0.00 38.20 3.24
316 317 2.094182 TCGACTGGGACATAGCAAAGTC 60.094 50.000 0.00 0.00 38.20 3.01
317 318 1.899814 TCGACTGGGACATAGCAAAGT 59.100 47.619 0.00 0.00 38.20 2.66
318 319 2.672961 TCGACTGGGACATAGCAAAG 57.327 50.000 0.00 0.00 38.20 2.77
319 320 4.955811 ATATCGACTGGGACATAGCAAA 57.044 40.909 0.00 0.00 38.20 3.68
320 321 4.955811 AATATCGACTGGGACATAGCAA 57.044 40.909 0.00 0.00 38.20 3.91
321 322 5.952347 AGATAATATCGACTGGGACATAGCA 59.048 40.000 0.00 0.00 38.20 3.49
322 323 6.458232 AGATAATATCGACTGGGACATAGC 57.542 41.667 0.00 0.00 38.20 2.97
323 324 7.416890 GGGAAGATAATATCGACTGGGACATAG 60.417 44.444 0.00 0.00 38.20 2.23
324 325 6.380274 GGGAAGATAATATCGACTGGGACATA 59.620 42.308 0.00 0.00 38.20 2.29
325 326 5.187967 GGGAAGATAATATCGACTGGGACAT 59.812 44.000 0.00 0.00 38.20 3.06
326 327 4.527038 GGGAAGATAATATCGACTGGGACA 59.473 45.833 0.00 0.00 0.00 4.02
327 328 4.773149 AGGGAAGATAATATCGACTGGGAC 59.227 45.833 0.00 0.00 0.00 4.46
328 329 5.011982 AGGGAAGATAATATCGACTGGGA 57.988 43.478 0.00 0.00 0.00 4.37
329 330 5.246203 TCAAGGGAAGATAATATCGACTGGG 59.754 44.000 0.00 0.00 0.00 4.45
330 331 6.346477 TCAAGGGAAGATAATATCGACTGG 57.654 41.667 0.00 0.00 0.00 4.00
331 332 8.839310 AAATCAAGGGAAGATAATATCGACTG 57.161 34.615 0.00 0.00 0.00 3.51
332 333 9.277783 CAAAATCAAGGGAAGATAATATCGACT 57.722 33.333 0.00 0.00 0.00 4.18
333 334 9.273016 TCAAAATCAAGGGAAGATAATATCGAC 57.727 33.333 0.00 0.00 0.00 4.20
334 335 9.273016 GTCAAAATCAAGGGAAGATAATATCGA 57.727 33.333 0.00 0.00 0.00 3.59
335 336 9.277783 AGTCAAAATCAAGGGAAGATAATATCG 57.722 33.333 0.00 0.00 0.00 2.92
338 339 9.973661 TTCAGTCAAAATCAAGGGAAGATAATA 57.026 29.630 0.00 0.00 0.00 0.98
339 340 8.884124 TTCAGTCAAAATCAAGGGAAGATAAT 57.116 30.769 0.00 0.00 0.00 1.28
340 341 8.163408 TCTTCAGTCAAAATCAAGGGAAGATAA 58.837 33.333 0.00 0.00 35.80 1.75
341 342 7.689299 TCTTCAGTCAAAATCAAGGGAAGATA 58.311 34.615 0.00 0.00 35.80 1.98
342 343 6.546484 TCTTCAGTCAAAATCAAGGGAAGAT 58.454 36.000 0.00 0.00 35.80 2.40
343 344 5.940617 TCTTCAGTCAAAATCAAGGGAAGA 58.059 37.500 0.00 0.00 37.69 2.87
344 345 6.402983 CGATCTTCAGTCAAAATCAAGGGAAG 60.403 42.308 0.00 0.00 33.59 3.46
345 346 5.412594 CGATCTTCAGTCAAAATCAAGGGAA 59.587 40.000 0.00 0.00 0.00 3.97
346 347 4.937620 CGATCTTCAGTCAAAATCAAGGGA 59.062 41.667 0.00 0.00 0.00 4.20
347 348 4.697352 ACGATCTTCAGTCAAAATCAAGGG 59.303 41.667 0.00 0.00 0.00 3.95
348 349 5.625251 CACGATCTTCAGTCAAAATCAAGG 58.375 41.667 0.00 0.00 0.00 3.61
349 350 5.084722 GCACGATCTTCAGTCAAAATCAAG 58.915 41.667 0.00 0.00 0.00 3.02
350 351 4.514816 TGCACGATCTTCAGTCAAAATCAA 59.485 37.500 0.00 0.00 0.00 2.57
351 352 4.064388 TGCACGATCTTCAGTCAAAATCA 58.936 39.130 0.00 0.00 0.00 2.57
352 353 4.668576 TGCACGATCTTCAGTCAAAATC 57.331 40.909 0.00 0.00 0.00 2.17
353 354 5.437289 TTTGCACGATCTTCAGTCAAAAT 57.563 34.783 0.00 0.00 0.00 1.82
354 355 4.891627 TTTGCACGATCTTCAGTCAAAA 57.108 36.364 0.00 0.00 0.00 2.44
355 356 4.891627 TTTTGCACGATCTTCAGTCAAA 57.108 36.364 0.00 0.00 0.00 2.69
356 357 4.891627 TTTTTGCACGATCTTCAGTCAA 57.108 36.364 0.00 0.00 0.00 3.18
407 408 8.728833 GCCAAGTGATATAGTATTCTAGTACGT 58.271 37.037 0.00 0.00 0.00 3.57
408 409 8.948145 AGCCAAGTGATATAGTATTCTAGTACG 58.052 37.037 0.00 0.00 0.00 3.67
414 415 9.594936 AGTCTAAGCCAAGTGATATAGTATTCT 57.405 33.333 0.00 0.00 0.00 2.40
416 417 9.988815 CAAGTCTAAGCCAAGTGATATAGTATT 57.011 33.333 0.00 0.00 0.00 1.89
417 418 8.589338 CCAAGTCTAAGCCAAGTGATATAGTAT 58.411 37.037 0.00 0.00 0.00 2.12
418 419 7.563924 ACCAAGTCTAAGCCAAGTGATATAGTA 59.436 37.037 0.00 0.00 0.00 1.82
419 420 6.384305 ACCAAGTCTAAGCCAAGTGATATAGT 59.616 38.462 0.00 0.00 0.00 2.12
420 421 6.821388 ACCAAGTCTAAGCCAAGTGATATAG 58.179 40.000 0.00 0.00 0.00 1.31
421 422 6.808321 ACCAAGTCTAAGCCAAGTGATATA 57.192 37.500 0.00 0.00 0.00 0.86
422 423 5.700402 ACCAAGTCTAAGCCAAGTGATAT 57.300 39.130 0.00 0.00 0.00 1.63
423 424 5.499004 AACCAAGTCTAAGCCAAGTGATA 57.501 39.130 0.00 0.00 0.00 2.15
424 425 4.373156 AACCAAGTCTAAGCCAAGTGAT 57.627 40.909 0.00 0.00 0.00 3.06
425 426 3.857157 AACCAAGTCTAAGCCAAGTGA 57.143 42.857 0.00 0.00 0.00 3.41
426 427 5.063880 ACTTAACCAAGTCTAAGCCAAGTG 58.936 41.667 0.00 0.00 41.25 3.16
427 428 5.306114 ACTTAACCAAGTCTAAGCCAAGT 57.694 39.130 0.00 0.00 41.25 3.16
437 438 5.463724 CAGTCAACTGAGACTTAACCAAGTC 59.536 44.000 4.05 9.06 46.26 3.01
438 439 5.128827 TCAGTCAACTGAGACTTAACCAAGT 59.871 40.000 8.75 0.00 46.26 3.16
439 440 5.601662 TCAGTCAACTGAGACTTAACCAAG 58.398 41.667 8.75 0.00 46.26 3.61
440 441 5.607939 TCAGTCAACTGAGACTTAACCAA 57.392 39.130 8.75 0.00 46.26 3.67
452 453 5.826601 TGTAGCTAGATCTCAGTCAACTG 57.173 43.478 0.00 3.69 45.08 3.16
453 454 5.534654 GGATGTAGCTAGATCTCAGTCAACT 59.465 44.000 25.24 0.00 0.00 3.16
454 455 5.534654 AGGATGTAGCTAGATCTCAGTCAAC 59.465 44.000 25.24 10.10 0.00 3.18
455 456 5.700183 AGGATGTAGCTAGATCTCAGTCAA 58.300 41.667 25.24 0.00 0.00 3.18
456 457 5.317600 AGGATGTAGCTAGATCTCAGTCA 57.682 43.478 25.24 4.34 0.00 3.41
457 458 7.938140 ATAAGGATGTAGCTAGATCTCAGTC 57.062 40.000 25.24 11.91 0.00 3.51
458 459 9.989296 AATATAAGGATGTAGCTAGATCTCAGT 57.011 33.333 25.24 14.36 0.00 3.41
471 472 9.938280 CCGTTGGATCTTTAATATAAGGATGTA 57.062 33.333 0.17 0.00 0.00 2.29
472 473 7.390718 GCCGTTGGATCTTTAATATAAGGATGT 59.609 37.037 0.17 0.00 0.00 3.06
473 474 7.607991 AGCCGTTGGATCTTTAATATAAGGATG 59.392 37.037 0.17 0.00 0.00 3.51
474 475 7.607991 CAGCCGTTGGATCTTTAATATAAGGAT 59.392 37.037 0.00 0.00 0.00 3.24
475 476 6.934645 CAGCCGTTGGATCTTTAATATAAGGA 59.065 38.462 0.00 0.00 0.00 3.36
476 477 6.348540 GCAGCCGTTGGATCTTTAATATAAGG 60.349 42.308 0.00 0.00 0.00 2.69
477 478 6.428159 AGCAGCCGTTGGATCTTTAATATAAG 59.572 38.462 0.00 0.00 0.00 1.73
478 479 6.296026 AGCAGCCGTTGGATCTTTAATATAA 58.704 36.000 0.00 0.00 0.00 0.98
479 480 5.865085 AGCAGCCGTTGGATCTTTAATATA 58.135 37.500 0.00 0.00 0.00 0.86
480 481 4.718961 AGCAGCCGTTGGATCTTTAATAT 58.281 39.130 0.00 0.00 0.00 1.28
481 482 4.127171 GAGCAGCCGTTGGATCTTTAATA 58.873 43.478 0.00 0.00 0.00 0.98
482 483 2.945668 GAGCAGCCGTTGGATCTTTAAT 59.054 45.455 0.00 0.00 0.00 1.40
483 484 2.027192 AGAGCAGCCGTTGGATCTTTAA 60.027 45.455 0.00 0.00 0.00 1.52
484 485 1.555075 AGAGCAGCCGTTGGATCTTTA 59.445 47.619 0.00 0.00 0.00 1.85
485 486 0.326264 AGAGCAGCCGTTGGATCTTT 59.674 50.000 0.00 0.00 0.00 2.52
486 487 1.134670 GTAGAGCAGCCGTTGGATCTT 60.135 52.381 0.00 0.00 0.00 2.40
487 488 0.461961 GTAGAGCAGCCGTTGGATCT 59.538 55.000 0.00 0.00 0.00 2.75
488 489 0.461961 AGTAGAGCAGCCGTTGGATC 59.538 55.000 0.00 0.00 0.00 3.36
489 490 0.905357 AAGTAGAGCAGCCGTTGGAT 59.095 50.000 0.00 0.00 0.00 3.41
490 491 0.685097 AAAGTAGAGCAGCCGTTGGA 59.315 50.000 0.00 0.00 0.00 3.53
491 492 1.079503 GAAAGTAGAGCAGCCGTTGG 58.920 55.000 0.00 0.00 0.00 3.77
492 493 1.996191 GAGAAAGTAGAGCAGCCGTTG 59.004 52.381 0.00 0.00 0.00 4.10
493 494 1.066787 GGAGAAAGTAGAGCAGCCGTT 60.067 52.381 0.00 0.00 0.00 4.44
494 495 0.533032 GGAGAAAGTAGAGCAGCCGT 59.467 55.000 0.00 0.00 0.00 5.68
495 496 0.820871 AGGAGAAAGTAGAGCAGCCG 59.179 55.000 0.00 0.00 0.00 5.52
496 497 2.419436 GGAAGGAGAAAGTAGAGCAGCC 60.419 54.545 0.00 0.00 0.00 4.85
497 498 2.234908 TGGAAGGAGAAAGTAGAGCAGC 59.765 50.000 0.00 0.00 0.00 5.25
498 499 3.674682 CGTGGAAGGAGAAAGTAGAGCAG 60.675 52.174 0.00 0.00 0.00 4.24
499 500 2.231478 CGTGGAAGGAGAAAGTAGAGCA 59.769 50.000 0.00 0.00 0.00 4.26
500 501 2.492484 TCGTGGAAGGAGAAAGTAGAGC 59.508 50.000 0.00 0.00 0.00 4.09
501 502 4.785511 TTCGTGGAAGGAGAAAGTAGAG 57.214 45.455 0.00 0.00 29.54 2.43
502 503 5.740290 ATTTCGTGGAAGGAGAAAGTAGA 57.260 39.130 0.00 0.00 37.31 2.59
503 504 7.603024 AGTTAATTTCGTGGAAGGAGAAAGTAG 59.397 37.037 0.00 0.00 36.34 2.57
504 505 7.447594 AGTTAATTTCGTGGAAGGAGAAAGTA 58.552 34.615 0.00 0.00 37.31 2.24
505 506 6.296803 AGTTAATTTCGTGGAAGGAGAAAGT 58.703 36.000 0.00 0.00 37.31 2.66
506 507 6.803154 AGTTAATTTCGTGGAAGGAGAAAG 57.197 37.500 0.00 0.00 37.31 2.62
560 561 5.755409 TCCTTCCTTCTGCAATAGTTACA 57.245 39.130 0.00 0.00 0.00 2.41
729 737 3.315191 CGTGACAATGAGGTTTGGACTTT 59.685 43.478 0.00 0.00 0.00 2.66
730 738 2.878406 CGTGACAATGAGGTTTGGACTT 59.122 45.455 0.00 0.00 0.00 3.01
731 739 2.158813 ACGTGACAATGAGGTTTGGACT 60.159 45.455 0.00 0.00 0.00 3.85
732 740 2.218603 ACGTGACAATGAGGTTTGGAC 58.781 47.619 0.00 0.00 0.00 4.02
733 741 2.631160 ACGTGACAATGAGGTTTGGA 57.369 45.000 0.00 0.00 0.00 3.53
734 742 2.159627 GCTACGTGACAATGAGGTTTGG 59.840 50.000 0.00 0.00 0.00 3.28
735 743 2.805671 TGCTACGTGACAATGAGGTTTG 59.194 45.455 0.00 0.00 0.00 2.93
815 837 2.850647 GTCGTATTTGTAGCTGGTCGAC 59.149 50.000 7.13 7.13 39.21 4.20
1629 1721 2.325583 ACTGACTGTTCTTGGCGAAA 57.674 45.000 0.00 0.00 32.41 3.46
1640 1732 4.392940 CCATTTCCTCTTCAACTGACTGT 58.607 43.478 0.00 0.00 0.00 3.55
1729 1845 2.462456 TCTTCTTGCTGATCGTGCTT 57.538 45.000 11.02 0.00 0.00 3.91
1879 2375 6.314784 GTCAGCACACTTAAAATATGACCAC 58.685 40.000 0.00 0.00 31.79 4.16
1911 2408 3.866703 TGTCCTGTGTATGGGTTCAAA 57.133 42.857 0.00 0.00 0.00 2.69
2082 2579 1.477558 CCTTTAGGTAGGCCATGCTGG 60.478 57.143 5.01 0.00 41.55 4.85
2106 2603 2.380410 CGGAGCGTTTCCTTCACGG 61.380 63.158 6.55 0.00 44.41 4.94
2116 2613 4.078516 GGGTGTAGCCGGAGCGTT 62.079 66.667 5.05 0.00 46.67 4.84
2168 2665 1.872234 CGTCGATGTCGCATTCGGT 60.872 57.895 0.00 0.00 39.60 4.69
2188 2685 2.484947 GGTTCTGGCGGGGACTTTATAG 60.485 54.545 0.00 0.00 0.00 1.31
2203 2700 2.357327 TTACGATGACACGGGTTCTG 57.643 50.000 0.00 0.00 37.61 3.02
2204 2701 2.680577 GTTTACGATGACACGGGTTCT 58.319 47.619 0.00 0.00 37.61 3.01
2205 2702 1.387756 CGTTTACGATGACACGGGTTC 59.612 52.381 0.00 0.00 43.02 3.62
2215 2712 0.373716 GAGCCCAAGCGTTTACGATG 59.626 55.000 6.44 4.22 46.67 3.84
2270 2767 0.693049 AACCTCTCCGGCATGAACTT 59.307 50.000 0.00 0.00 35.61 2.66
2353 2850 0.830444 TCCCGGGACATATCCTTCGG 60.830 60.000 22.63 1.03 44.94 4.30
2407 2904 5.565509 TCATAACAATAGACAAGGTTGGCA 58.434 37.500 0.00 0.00 39.18 4.92
2509 3006 6.647895 GTGTTCTCGGGACAAGAAATAACTTA 59.352 38.462 0.00 0.00 0.00 2.24
2533 3030 9.881649 AGATATTATGCATGATTAACATCTCGT 57.118 29.630 10.16 0.00 37.07 4.18
2560 3057 7.541783 GCTTTACAAGTGCACATAATTCATGAA 59.458 33.333 21.04 11.26 38.10 2.57
2707 3204 6.154363 ACCATCAATAAAACCCATTTGATCGT 59.846 34.615 0.00 0.00 36.84 3.73
2756 3260 3.821033 ACTTGATGAGGTAGGCAACAAAC 59.179 43.478 0.00 0.00 41.41 2.93
2761 3265 3.869912 GCAAGACTTGATGAGGTAGGCAA 60.870 47.826 19.51 0.00 0.00 4.52
2849 3353 5.529289 AGAGTGGATATAAGTGAGGTCCAA 58.471 41.667 0.00 0.00 40.38 3.53
2927 3431 3.001736 GCTTGCCTTGTCTCATATCGTTC 59.998 47.826 0.00 0.00 0.00 3.95
3012 3565 8.448816 TGGATAGGAGAGAGAATTGTGACTATA 58.551 37.037 0.00 0.00 0.00 1.31
3020 3573 9.050601 GTTGTAAATGGATAGGAGAGAGAATTG 57.949 37.037 0.00 0.00 0.00 2.32
3022 3575 8.560124 AGTTGTAAATGGATAGGAGAGAGAAT 57.440 34.615 0.00 0.00 0.00 2.40
3065 3619 2.029290 GGCGTCGTCCCATGTATTCTAT 60.029 50.000 0.00 0.00 0.00 1.98
3097 3651 5.842328 TCAAGGTCTTAGGGTGAGAACTTAA 59.158 40.000 4.29 0.00 46.56 1.85
3117 3671 8.290325 GTCTAAGATGTGTTTTAGGGTTTCAAG 58.710 37.037 0.00 0.00 0.00 3.02
3193 3747 2.941064 CTCATCATCTGTTTGCGATGGT 59.059 45.455 0.00 0.00 38.95 3.55
3252 3806 1.134340 ACCAACAGAGTGCCAACGTAA 60.134 47.619 0.00 0.00 0.00 3.18
3289 3843 1.791103 GCTCCGATCCTCCTCGAGTG 61.791 65.000 12.31 3.02 41.12 3.51
3319 3873 3.641436 TGACAGCACCTCTTCTTTGAGTA 59.359 43.478 0.00 0.00 32.50 2.59
3334 3888 4.019312 TGCAGGCGGATGACAGCA 62.019 61.111 0.00 0.00 38.87 4.41
3336 3890 2.046988 TGTGCAGGCGGATGACAG 60.047 61.111 0.00 0.00 0.00 3.51
3350 3904 3.680786 TCCTCGCAGGACGGTGTG 61.681 66.667 1.25 0.00 40.06 3.82
3357 3911 1.002773 GGGTTTTTAGTCCTCGCAGGA 59.997 52.381 1.25 1.25 43.43 3.86
3398 3952 1.725164 GAGAATTTCGGTGTGTCGACC 59.275 52.381 14.12 5.06 39.01 4.79
3404 3958 2.472695 TGGAGGAGAATTTCGGTGTG 57.527 50.000 0.00 0.00 0.00 3.82
3447 4002 3.155167 GGATCCGCGTCCCCTCTT 61.155 66.667 4.92 0.00 31.82 2.85
3481 4036 1.248486 GAACCAAAGAAGGTCCCTGC 58.752 55.000 0.00 0.00 42.25 4.85
3485 4040 8.429641 TCATATACTATGAACCAAAGAAGGTCC 58.570 37.037 0.00 0.00 42.25 4.46
3742 4303 7.756614 AGGTTACAGGAACTTTTAGGAATTCT 58.243 34.615 5.23 0.00 34.60 2.40
3755 4316 2.619849 GGCCCCTTTAGGTTACAGGAAC 60.620 54.545 0.00 0.00 37.31 3.62
3756 4317 1.637035 GGCCCCTTTAGGTTACAGGAA 59.363 52.381 0.00 0.00 0.00 3.36
3759 4320 1.296002 AGGGCCCCTTTAGGTTACAG 58.704 55.000 21.43 0.00 0.00 2.74
3765 4326 2.514160 ACTGATTTAGGGCCCCTTTAGG 59.486 50.000 21.43 6.37 34.61 2.69
3767 4328 4.540906 TGTTACTGATTTAGGGCCCCTTTA 59.459 41.667 21.43 0.30 34.61 1.85
3783 4344 7.757624 GGAGTAAGAGATCTTCAACTGTTACTG 59.242 40.741 16.99 0.00 45.95 2.74
3792 4353 9.480861 TCTCATTTAGGAGTAAGAGATCTTCAA 57.519 33.333 0.00 0.00 36.30 2.69
3888 5287 0.538287 AACCAGCCCAGTTGAGCTTC 60.538 55.000 0.00 0.00 37.18 3.86
3950 5349 4.760047 CTGTCCGGAACCAGCCCG 62.760 72.222 5.23 0.00 46.10 6.13
4012 5411 4.714802 AGGTTGGGCTTAGAGTTTGTTTTT 59.285 37.500 0.00 0.00 0.00 1.94
4013 5412 4.286707 AGGTTGGGCTTAGAGTTTGTTTT 58.713 39.130 0.00 0.00 0.00 2.43
4014 5413 3.910989 AGGTTGGGCTTAGAGTTTGTTT 58.089 40.909 0.00 0.00 0.00 2.83
4015 5414 3.595190 AGGTTGGGCTTAGAGTTTGTT 57.405 42.857 0.00 0.00 0.00 2.83
4016 5415 3.487372 GAAGGTTGGGCTTAGAGTTTGT 58.513 45.455 0.00 0.00 0.00 2.83
4017 5416 2.484264 CGAAGGTTGGGCTTAGAGTTTG 59.516 50.000 0.00 0.00 0.00 2.93
4018 5417 2.779506 CGAAGGTTGGGCTTAGAGTTT 58.220 47.619 0.00 0.00 0.00 2.66
4019 5418 1.610886 GCGAAGGTTGGGCTTAGAGTT 60.611 52.381 0.00 0.00 0.00 3.01
4020 5419 0.036294 GCGAAGGTTGGGCTTAGAGT 60.036 55.000 0.00 0.00 0.00 3.24
4021 5420 1.084370 CGCGAAGGTTGGGCTTAGAG 61.084 60.000 0.00 0.00 0.00 2.43
4022 5421 1.079405 CGCGAAGGTTGGGCTTAGA 60.079 57.895 0.00 0.00 0.00 2.10
4038 5437 0.668535 GGGGAATATTTGCCAGTCGC 59.331 55.000 0.15 0.00 43.95 5.19
4143 5569 4.371231 AAGTGGGGAGGGGAGGGG 62.371 72.222 0.00 0.00 0.00 4.79
4144 5570 3.017581 CAAGTGGGGAGGGGAGGG 61.018 72.222 0.00 0.00 0.00 4.30
4145 5571 2.840203 TAGCAAGTGGGGAGGGGAGG 62.840 65.000 0.00 0.00 0.00 4.30
4146 5572 1.306997 TAGCAAGTGGGGAGGGGAG 60.307 63.158 0.00 0.00 0.00 4.30
4187 5613 2.115291 GGGGCTGCGAAGATGTTCC 61.115 63.158 0.00 0.00 0.00 3.62
4230 5657 1.602668 GCTTGCTGTTTGATTTCGGCA 60.603 47.619 0.00 0.00 42.99 5.69
4235 5662 0.664166 CGCGGCTTGCTGTTTGATTT 60.664 50.000 0.00 0.00 43.27 2.17
4240 5667 2.904866 TTCCGCGGCTTGCTGTTT 60.905 55.556 23.51 0.00 43.27 2.83
4348 5790 2.753452 TCGATTCCTAAGCGAGAACACT 59.247 45.455 0.00 0.00 45.18 3.55
4363 5901 2.537401 CGGTTAACTCCACCTCGATTC 58.463 52.381 5.42 0.00 31.32 2.52
4367 5905 0.320073 TTGCGGTTAACTCCACCTCG 60.320 55.000 5.42 0.00 31.32 4.63
4369 5907 2.579410 AATTGCGGTTAACTCCACCT 57.421 45.000 5.42 0.00 31.32 4.00
4395 5933 9.830975 AACTTTTGGCTTAACAAATAGTCAAAT 57.169 25.926 0.00 0.00 43.22 2.32
4397 5935 9.959749 CTAACTTTTGGCTTAACAAATAGTCAA 57.040 29.630 0.00 0.00 39.80 3.18
4398 5936 9.344772 TCTAACTTTTGGCTTAACAAATAGTCA 57.655 29.630 0.00 0.00 39.80 3.41
4399 5937 9.827411 CTCTAACTTTTGGCTTAACAAATAGTC 57.173 33.333 0.00 0.00 39.80 2.59
4400 5938 8.297426 GCTCTAACTTTTGGCTTAACAAATAGT 58.703 33.333 0.00 0.00 39.80 2.12
4401 5939 8.515414 AGCTCTAACTTTTGGCTTAACAAATAG 58.485 33.333 0.00 0.00 39.80 1.73
4402 5940 8.404107 AGCTCTAACTTTTGGCTTAACAAATA 57.596 30.769 0.00 0.00 39.80 1.40
4429 5969 3.611057 GCTGACAAAGTTTGCAGGATCAG 60.611 47.826 26.78 23.90 36.21 2.90
4441 5981 2.706190 AGGTCTACTTGGCTGACAAAGT 59.294 45.455 0.00 0.62 38.91 2.66
4452 5992 4.694339 GGTATAAGCCACAGGTCTACTTG 58.306 47.826 0.00 0.00 0.00 3.16
4456 5996 2.313317 CCGGTATAAGCCACAGGTCTA 58.687 52.381 0.00 0.00 0.00 2.59
4457 5997 1.120530 CCGGTATAAGCCACAGGTCT 58.879 55.000 0.00 0.00 0.00 3.85
4462 6002 1.153249 GCTGCCGGTATAAGCCACA 60.153 57.895 1.90 0.00 0.00 4.17
4463 6003 3.732470 GCTGCCGGTATAAGCCAC 58.268 61.111 1.90 0.00 0.00 5.01
4467 6007 2.417719 GAAGATGGCTGCCGGTATAAG 58.582 52.381 14.98 0.00 0.00 1.73
4506 6046 7.171508 TCAGATGTTTGTGTTTCTAACTAGCAG 59.828 37.037 0.00 0.00 34.03 4.24
4536 6076 8.404000 GCATATTGCTAGCTTGCTGAATAATAT 58.596 33.333 20.64 16.26 40.96 1.28
4554 6096 6.633500 TGGATAAGGTAGTTTGCATATTGC 57.367 37.500 0.00 0.00 45.29 3.56
4717 6261 3.294214 GTCTCCATCATCCCTGCAAAAT 58.706 45.455 0.00 0.00 0.00 1.82
4811 6355 0.033504 TGAGCACCTTTCAGACGTCC 59.966 55.000 13.01 0.00 0.00 4.79
4972 6516 2.874014 TCCCACAATCAATCTGCAACA 58.126 42.857 0.00 0.00 0.00 3.33
5006 6550 9.849166 CTTTACCTAAACTTGAGTTTCAACAAA 57.151 29.630 12.05 8.51 44.15 2.83
5089 6633 2.305635 TGGCCTAAAGTGCTGAATCTCA 59.694 45.455 3.32 0.00 0.00 3.27
5170 6732 2.579873 CTGCCATCTATTTGGACCCAG 58.420 52.381 0.00 0.00 39.25 4.45
5402 6975 3.405831 TCTTCAGTTTCTGTCCATGCAG 58.594 45.455 0.00 0.00 37.81 4.41
5535 7109 7.338196 TGTTAGAAACTCCTTCACAAACATCAA 59.662 33.333 0.00 0.00 36.40 2.57
5636 7210 0.599558 GCAATTTGGCTGCACTGAGA 59.400 50.000 0.50 0.00 39.69 3.27
5638 7212 2.736197 AGCAATTTGGCTGCACTGA 58.264 47.368 0.50 0.00 43.89 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.