Multiple sequence alignment - TraesCS6B01G158100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G158100 chr6B 100.000 2453 0 0 1 2453 160681552 160684004 0.000000e+00 4530.0
1 TraesCS6B01G158100 chr6B 89.628 1639 165 3 1 1638 160715387 160717021 0.000000e+00 2080.0
2 TraesCS6B01G158100 chr6B 87.090 1797 204 17 1 1789 159988246 159990022 0.000000e+00 2008.0
3 TraesCS6B01G158100 chr6B 92.708 96 7 0 2247 2342 160709912 160710007 3.290000e-29 139.0
4 TraesCS6B01G158100 chr6D 89.872 1639 161 3 1 1638 84629429 84631063 0.000000e+00 2102.0
5 TraesCS6B01G158100 chr6D 87.382 1799 204 16 1 1789 84230259 84232044 0.000000e+00 2043.0
6 TraesCS6B01G158100 chr6D 86.581 1796 217 17 2 1788 84618458 84620238 0.000000e+00 1960.0
7 TraesCS6B01G158100 chr6D 85.381 1799 234 18 2 1789 84216558 84218338 0.000000e+00 1838.0
8 TraesCS6B01G158100 chr6D 91.772 632 22 5 1826 2453 84620394 84620999 0.000000e+00 852.0
9 TraesCS6B01G158100 chr6D 100.000 34 0 0 1796 1829 84620266 84620299 2.040000e-06 63.9
10 TraesCS6B01G158100 chr6A 86.923 1797 209 18 1 1789 101561082 101562860 0.000000e+00 1993.0
11 TraesCS6B01G158100 chr6A 86.397 1757 213 20 1 1750 101553190 101554927 0.000000e+00 1897.0
12 TraesCS6B01G158100 chr6A 85.261 1798 237 18 2 1789 101546597 101548376 0.000000e+00 1827.0
13 TraesCS6B01G158100 chr6A 77.622 286 39 17 2064 2342 101851820 101852087 1.520000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G158100 chr6B 160681552 160684004 2452 False 4530.000000 4530 100.000000 1 2453 1 chr6B.!!$F2 2452
1 TraesCS6B01G158100 chr6B 160715387 160717021 1634 False 2080.000000 2080 89.628000 1 1638 1 chr6B.!!$F4 1637
2 TraesCS6B01G158100 chr6B 159988246 159990022 1776 False 2008.000000 2008 87.090000 1 1789 1 chr6B.!!$F1 1788
3 TraesCS6B01G158100 chr6D 84629429 84631063 1634 False 2102.000000 2102 89.872000 1 1638 1 chr6D.!!$F3 1637
4 TraesCS6B01G158100 chr6D 84230259 84232044 1785 False 2043.000000 2043 87.382000 1 1789 1 chr6D.!!$F2 1788
5 TraesCS6B01G158100 chr6D 84216558 84218338 1780 False 1838.000000 1838 85.381000 2 1789 1 chr6D.!!$F1 1787
6 TraesCS6B01G158100 chr6D 84618458 84620999 2541 False 958.633333 1960 92.784333 2 2453 3 chr6D.!!$F4 2451
7 TraesCS6B01G158100 chr6A 101561082 101562860 1778 False 1993.000000 1993 86.923000 1 1789 1 chr6A.!!$F3 1788
8 TraesCS6B01G158100 chr6A 101553190 101554927 1737 False 1897.000000 1897 86.397000 1 1750 1 chr6A.!!$F2 1749
9 TraesCS6B01G158100 chr6A 101546597 101548376 1779 False 1827.000000 1827 85.261000 2 1789 1 chr6A.!!$F1 1787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.17576 GGACGCTGATGCTCCTACAA 59.824 55.0 0.0 0.0 35.26 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2234 0.400213 TTCCCAGTAACCCACAGCTG 59.6 55.0 13.48 13.48 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 166 6.667414 AGTCTAGGATCTTCAGATTTGTGAGT 59.333 38.462 0.00 0.00 34.37 3.41
204 205 2.992124 TCCTTCCAGTCAACGAACAA 57.008 45.000 0.00 0.00 0.00 2.83
212 213 1.333619 AGTCAACGAACAATGGTGCAC 59.666 47.619 8.80 8.80 0.00 4.57
213 214 1.333619 GTCAACGAACAATGGTGCACT 59.666 47.619 17.98 0.00 0.00 4.40
315 316 0.175760 GGACGCTGATGCTCCTACAA 59.824 55.000 0.00 0.00 35.26 2.41
320 321 2.548875 GCTGATGCTCCTACAACTCTG 58.451 52.381 0.00 0.00 36.03 3.35
362 363 5.890334 TGTGATGTTTGTGAAGGAGTTTTC 58.110 37.500 0.00 0.00 0.00 2.29
364 365 5.973565 GTGATGTTTGTGAAGGAGTTTTCAG 59.026 40.000 0.00 0.00 37.72 3.02
407 408 4.397417 GTGCTTCAGATTGCCTATTCTTGT 59.603 41.667 0.00 0.00 0.00 3.16
411 412 6.349611 GCTTCAGATTGCCTATTCTTGTTGAA 60.350 38.462 0.00 0.00 39.24 2.69
420 421 5.447818 GCCTATTCTTGTTGAAATCTCACCG 60.448 44.000 0.00 0.00 38.29 4.94
433 434 1.418264 TCTCACCGTGGAAATGGTTGA 59.582 47.619 0.00 0.00 35.96 3.18
434 435 2.039746 TCTCACCGTGGAAATGGTTGAT 59.960 45.455 0.00 0.00 35.96 2.57
563 564 3.939592 GCGAAGTTTACCTTGCCTAGATT 59.060 43.478 0.00 0.00 32.03 2.40
624 625 4.394300 AGATTTGTGCAGTTGCTCATAGTC 59.606 41.667 9.37 8.17 42.97 2.59
672 675 0.830648 TACCCAAATGGAGCTCCTCG 59.169 55.000 32.28 17.39 37.39 4.63
849 855 4.273318 AGGTAGCATGGAAGATTTCAACC 58.727 43.478 0.00 0.00 0.00 3.77
852 858 1.818674 GCATGGAAGATTTCAACCGGT 59.181 47.619 0.00 0.00 0.00 5.28
866 872 4.035112 TCAACCGGTAGAATCCCACTTAT 58.965 43.478 8.00 0.00 0.00 1.73
933 939 0.385473 GTGTGTTTGGAATGTCGCCG 60.385 55.000 0.00 0.00 0.00 6.46
1113 1119 3.367498 GGTTGCTCGAGATGTTGAGTACT 60.367 47.826 18.75 0.00 36.63 2.73
1272 1278 0.689055 AGAGGTTGACATGCAGCAGA 59.311 50.000 0.00 0.00 0.00 4.26
1509 1515 1.274712 CAGGAGAGGCCAAGAAGAGT 58.725 55.000 5.01 0.00 40.02 3.24
1521 1527 3.259374 CCAAGAAGAGTAGCAGGAACAGA 59.741 47.826 0.00 0.00 0.00 3.41
1533 1539 1.417592 GAACAGATGCAGCACGACG 59.582 57.895 4.07 0.00 0.00 5.12
1547 1553 2.572284 GACGGGAGGAACGGTGAG 59.428 66.667 0.00 0.00 35.23 3.51
1551 1557 1.295746 GGGAGGAACGGTGAGGAAC 59.704 63.158 0.00 0.00 0.00 3.62
1586 1597 4.098807 GTGTTTCTTCCCCTTGTTTTGCTA 59.901 41.667 0.00 0.00 0.00 3.49
1597 1608 4.687483 CCTTGTTTTGCTATTGCTTGAAGG 59.313 41.667 0.00 2.02 40.48 3.46
1620 1632 2.967599 CATGCACTGCTGGTACTCTA 57.032 50.000 1.98 0.00 0.00 2.43
1628 1640 5.623368 GCACTGCTGGTACTCTATATCATCC 60.623 48.000 0.00 0.00 0.00 3.51
1644 1657 3.364549 TCATCCAACAGGGGCTTTATTG 58.635 45.455 0.00 0.00 37.22 1.90
1657 1670 3.441572 GGCTTTATTGTGTGCATCAGAGT 59.558 43.478 0.00 0.00 0.00 3.24
1658 1671 4.437930 GGCTTTATTGTGTGCATCAGAGTC 60.438 45.833 0.00 0.00 0.00 3.36
1659 1672 4.154737 GCTTTATTGTGTGCATCAGAGTCA 59.845 41.667 0.00 0.00 0.00 3.41
1660 1673 5.335113 GCTTTATTGTGTGCATCAGAGTCAA 60.335 40.000 0.00 0.00 0.00 3.18
1661 1674 6.624423 GCTTTATTGTGTGCATCAGAGTCAAT 60.624 38.462 0.00 0.00 0.00 2.57
1662 1675 4.696899 ATTGTGTGCATCAGAGTCAATG 57.303 40.909 0.00 0.00 0.00 2.82
1663 1676 3.405823 TGTGTGCATCAGAGTCAATGA 57.594 42.857 9.12 0.00 0.00 2.57
1664 1677 3.742385 TGTGTGCATCAGAGTCAATGAA 58.258 40.909 9.12 0.00 0.00 2.57
1665 1678 3.499537 TGTGTGCATCAGAGTCAATGAAC 59.500 43.478 8.90 8.90 32.83 3.18
1667 1680 3.749609 TGTGCATCAGAGTCAATGAACAG 59.250 43.478 12.92 0.00 36.67 3.16
1670 1683 3.750130 GCATCAGAGTCAATGAACAGTGT 59.250 43.478 9.12 0.00 0.00 3.55
1677 1690 4.127171 AGTCAATGAACAGTGTACACCAC 58.873 43.478 22.28 11.49 44.89 4.16
1694 1707 4.695455 ACACCACTCATAACATTTTCTCCG 59.305 41.667 0.00 0.00 0.00 4.63
1698 1711 5.181245 CCACTCATAACATTTTCTCCGTGTT 59.819 40.000 0.00 0.00 39.26 3.32
1718 1736 2.512692 ATGTCATGGGTGCAGCTTAA 57.487 45.000 16.65 2.31 0.00 1.85
1752 1772 1.650825 GTTGGTTGGTGCACAAAAGG 58.349 50.000 20.43 0.00 41.58 3.11
1756 1776 1.143620 TTGGTGCACAAAAGGCTGC 59.856 52.632 20.43 0.00 35.79 5.25
1764 1784 2.095718 GCACAAAAGGCTGCAGTACTAC 60.096 50.000 16.64 0.00 33.31 2.73
1789 1809 1.679032 GGAAAGCTACATCCGTGCCTT 60.679 52.381 0.00 0.00 0.00 4.35
1790 1810 1.666189 GAAAGCTACATCCGTGCCTTC 59.334 52.381 0.00 0.00 0.00 3.46
1791 1811 0.905357 AAGCTACATCCGTGCCTTCT 59.095 50.000 0.00 0.00 0.00 2.85
1793 1813 1.409427 AGCTACATCCGTGCCTTCTAC 59.591 52.381 0.00 0.00 0.00 2.59
1933 2071 0.625849 CTACCAGCCCCAAGGTTCAT 59.374 55.000 0.00 0.00 39.31 2.57
2019 2160 7.970384 TCTTAACTGACCTATTTATTGCGTTG 58.030 34.615 0.00 0.00 0.00 4.10
2021 2162 4.006989 ACTGACCTATTTATTGCGTTGCA 58.993 39.130 0.00 0.00 36.47 4.08
2022 2163 4.094887 ACTGACCTATTTATTGCGTTGCAG 59.905 41.667 0.00 0.00 40.61 4.41
2067 2208 1.670406 GCTGCCATCGATAGCCTGG 60.670 63.158 13.35 5.48 40.35 4.45
2096 2237 4.018409 CCCTAGTTTTGGGCCAGC 57.982 61.111 6.23 1.09 37.99 4.85
2097 2238 1.384191 CCCTAGTTTTGGGCCAGCT 59.616 57.895 6.23 9.38 37.99 4.24
2098 2239 0.967380 CCCTAGTTTTGGGCCAGCTG 60.967 60.000 6.23 6.78 37.99 4.24
2099 2240 0.251341 CCTAGTTTTGGGCCAGCTGT 60.251 55.000 13.81 0.00 0.00 4.40
2100 2241 0.883833 CTAGTTTTGGGCCAGCTGTG 59.116 55.000 13.81 5.37 0.00 3.66
2102 2243 2.523902 TTTTGGGCCAGCTGTGGG 60.524 61.111 13.81 0.00 45.17 4.61
2103 2244 3.387609 TTTTGGGCCAGCTGTGGGT 62.388 57.895 13.81 0.00 45.17 4.51
2104 2245 2.887738 TTTTGGGCCAGCTGTGGGTT 62.888 55.000 13.81 0.00 45.17 4.11
2117 2258 3.496331 CTGTGGGTTACTGGGAATTTGT 58.504 45.455 0.00 0.00 0.00 2.83
2127 2268 3.139397 ACTGGGAATTTGTTCACCCTACA 59.861 43.478 0.00 0.00 42.49 2.74
2177 2318 2.498885 GACCGTACCCAAAGATACCAGT 59.501 50.000 0.00 0.00 0.00 4.00
2227 2368 9.768662 ATTTGATAAATAATGCAGAATGGTTCC 57.231 29.630 0.00 0.00 35.86 3.62
2228 2369 7.894753 TGATAAATAATGCAGAATGGTTCCA 57.105 32.000 0.00 0.00 35.86 3.53
2229 2370 7.944061 TGATAAATAATGCAGAATGGTTCCAG 58.056 34.615 0.00 0.00 35.86 3.86
2230 2371 7.560991 TGATAAATAATGCAGAATGGTTCCAGT 59.439 33.333 0.00 0.00 35.86 4.00
2231 2372 6.610075 AAATAATGCAGAATGGTTCCAGTT 57.390 33.333 0.00 0.00 35.86 3.16
2232 2373 7.716799 AAATAATGCAGAATGGTTCCAGTTA 57.283 32.000 0.00 0.00 35.86 2.24
2233 2374 6.949352 ATAATGCAGAATGGTTCCAGTTAG 57.051 37.500 0.00 0.00 35.86 2.34
2234 2375 3.071874 TGCAGAATGGTTCCAGTTAGG 57.928 47.619 0.00 0.00 35.86 2.69
2248 2389 2.806244 CAGTTAGGCAGTTACACCACAC 59.194 50.000 0.00 0.00 0.00 3.82
2409 2550 6.972328 TCTTACTTCATTGTTGTTTCTTGCAC 59.028 34.615 0.00 0.00 0.00 4.57
2426 2567 2.009042 GCACGATGGGAAGAGTTCAGG 61.009 57.143 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.284617 CCAATCACCTTGATGCAGATGA 58.715 45.455 0.00 0.00 37.15 2.92
111 112 0.902531 ATCGACTCACCGGACCAATT 59.097 50.000 9.46 0.00 0.00 2.32
120 121 5.869888 AGACTTATTCAACAATCGACTCACC 59.130 40.000 0.00 0.00 0.00 4.02
204 205 2.158914 TCAATATCTCGCAGTGCACCAT 60.159 45.455 16.83 5.45 0.00 3.55
212 213 5.536260 TCCAGAATCTTCAATATCTCGCAG 58.464 41.667 0.00 0.00 0.00 5.18
213 214 5.535753 TCCAGAATCTTCAATATCTCGCA 57.464 39.130 0.00 0.00 0.00 5.10
307 308 1.902508 TGCCCTTCAGAGTTGTAGGAG 59.097 52.381 2.24 0.00 42.72 3.69
315 316 1.615392 GTTTTGCATGCCCTTCAGAGT 59.385 47.619 16.68 0.00 0.00 3.24
320 321 3.002553 CACAAAAGTTTTGCATGCCCTTC 59.997 43.478 24.86 3.59 0.00 3.46
362 363 6.102663 CACTTGTCCTTCCTATCACTTACTG 58.897 44.000 0.00 0.00 0.00 2.74
364 365 4.870991 GCACTTGTCCTTCCTATCACTTAC 59.129 45.833 0.00 0.00 0.00 2.34
407 408 3.505680 CCATTTCCACGGTGAGATTTCAA 59.494 43.478 10.28 0.00 34.49 2.69
411 412 2.819608 CAACCATTTCCACGGTGAGATT 59.180 45.455 10.28 0.00 35.08 2.40
420 421 3.578688 GCTGTCAATCAACCATTTCCAC 58.421 45.455 0.00 0.00 0.00 4.02
433 434 2.281692 TGCACTGCGGCTGTCAAT 60.282 55.556 9.71 0.00 34.04 2.57
434 435 2.974148 CTGCACTGCGGCTGTCAA 60.974 61.111 9.71 0.70 34.04 3.18
520 521 3.376234 GCCACCCTACCGAATCTAAAAAC 59.624 47.826 0.00 0.00 0.00 2.43
532 533 1.676916 GGTAAACTTCGCCACCCTACC 60.677 57.143 0.00 0.00 0.00 3.18
563 564 5.436175 TGAAGATCAACAACTTCAGTGGAA 58.564 37.500 0.00 0.00 44.59 3.53
624 625 3.473647 TCTGGGGAGCTGCCATCG 61.474 66.667 26.95 13.08 38.95 3.84
672 675 0.396417 TAGGTCAGCTCAGGAGGCTC 60.396 60.000 5.78 5.78 38.03 4.70
933 939 2.421424 CCTCTGCTACAACCAATTGAGC 59.579 50.000 7.12 8.07 39.30 4.26
976 982 2.227388 CGTCTTCTCTTTGCATTGGCTT 59.773 45.455 0.00 0.00 41.91 4.35
983 989 3.325870 CACATACCGTCTTCTCTTTGCA 58.674 45.455 0.00 0.00 0.00 4.08
1098 1104 3.838120 TCTGCAAGTACTCAACATCTCG 58.162 45.455 0.00 0.00 33.76 4.04
1113 1119 3.241530 ACTGACCGGCCTCTGCAA 61.242 61.111 0.00 0.00 40.13 4.08
1236 1242 3.082548 CCTCTCGTACAACTCCTTCTCA 58.917 50.000 0.00 0.00 0.00 3.27
1272 1278 3.314331 CTGGCCGACCTCACCAGT 61.314 66.667 0.00 0.00 44.91 4.00
1425 1431 2.271800 CTTGCCGGACTATCACAAGAC 58.728 52.381 5.05 0.00 40.06 3.01
1431 1437 1.207089 CAGTTCCTTGCCGGACTATCA 59.793 52.381 5.05 0.00 42.97 2.15
1452 1458 1.003233 GGAGAAGCGCAACCTCCTT 60.003 57.895 25.65 5.61 42.36 3.36
1509 1515 0.614812 TGCTGCATCTGTTCCTGCTA 59.385 50.000 0.00 0.00 39.16 3.49
1521 1527 4.457496 CCTCCCGTCGTGCTGCAT 62.457 66.667 5.27 0.00 0.00 3.96
1533 1539 1.295746 GTTCCTCACCGTTCCTCCC 59.704 63.158 0.00 0.00 0.00 4.30
1551 1557 0.673437 AGAAACACCAACCAATGCGG 59.327 50.000 0.00 0.00 42.50 5.69
1586 1597 1.828595 TGCATGCATCCTTCAAGCAAT 59.171 42.857 18.46 0.00 42.15 3.56
1618 1630 4.647564 AAGCCCCTGTTGGATGATATAG 57.352 45.455 0.00 0.00 35.39 1.31
1620 1632 3.979501 AAAGCCCCTGTTGGATGATAT 57.020 42.857 0.00 0.00 35.39 1.63
1628 1640 2.610232 GCACACAATAAAGCCCCTGTTG 60.610 50.000 0.00 0.00 0.00 3.33
1644 1657 3.499537 TGTTCATTGACTCTGATGCACAC 59.500 43.478 0.00 0.00 27.28 3.82
1670 1683 5.872617 CGGAGAAAATGTTATGAGTGGTGTA 59.127 40.000 0.00 0.00 0.00 2.90
1688 1701 2.569853 ACCCATGACATAACACGGAGAA 59.430 45.455 0.00 0.00 0.00 2.87
1689 1702 2.093711 CACCCATGACATAACACGGAGA 60.094 50.000 0.00 0.00 0.00 3.71
1690 1703 2.279741 CACCCATGACATAACACGGAG 58.720 52.381 0.00 0.00 0.00 4.63
1694 1707 1.133025 GCTGCACCCATGACATAACAC 59.867 52.381 0.00 0.00 0.00 3.32
1698 1711 3.544684 CTTAAGCTGCACCCATGACATA 58.455 45.455 1.02 0.00 0.00 2.29
1735 1753 0.975040 AGCCTTTTGTGCACCAACCA 60.975 50.000 15.69 0.00 31.20 3.67
1752 1772 1.153628 CCCACGGTAGTACTGCAGC 60.154 63.158 15.27 0.00 0.00 5.25
1756 1776 1.549170 AGCTTTCCCACGGTAGTACTG 59.451 52.381 5.39 7.62 0.00 2.74
1764 1784 0.810031 CGGATGTAGCTTTCCCACGG 60.810 60.000 0.00 0.00 0.00 4.94
1789 1809 6.710597 ATAAACTAGTTGATGGCGAGTAGA 57.289 37.500 9.34 0.00 35.71 2.59
1790 1810 8.867112 TTTATAAACTAGTTGATGGCGAGTAG 57.133 34.615 14.89 0.00 37.43 2.57
1791 1811 7.437267 GCTTTATAAACTAGTTGATGGCGAGTA 59.563 37.037 14.89 0.00 0.00 2.59
1793 1813 6.480320 AGCTTTATAAACTAGTTGATGGCGAG 59.520 38.462 14.89 8.42 0.00 5.03
1851 1989 7.516198 ACAATGCCTAACATCAATCTAATCC 57.484 36.000 0.00 0.00 38.34 3.01
1854 1992 8.621532 GGATACAATGCCTAACATCAATCTAA 57.378 34.615 0.00 0.00 38.34 2.10
1895 2033 7.429374 TGGTAGATGACAGATTGATTTCTCT 57.571 36.000 0.00 0.00 0.00 3.10
1896 2034 6.202570 GCTGGTAGATGACAGATTGATTTCTC 59.797 42.308 0.00 0.00 36.86 2.87
1897 2035 6.054295 GCTGGTAGATGACAGATTGATTTCT 58.946 40.000 0.00 0.00 36.86 2.52
1933 2071 5.973899 TTTCAGCCATGTAAACATAAGCA 57.026 34.783 15.61 0.00 37.31 3.91
1992 2133 8.142994 ACGCAATAAATAGGTCAGTTAAGATG 57.857 34.615 0.00 0.00 0.00 2.90
2000 2141 4.591202 CTGCAACGCAATAAATAGGTCAG 58.409 43.478 0.00 0.00 38.41 3.51
2004 2145 2.543653 GGGCTGCAACGCAATAAATAGG 60.544 50.000 0.50 0.00 38.41 2.57
2019 2160 3.679389 AGCATATGTACTATTGGGCTGC 58.321 45.455 4.29 0.00 0.00 5.25
2021 2162 5.046304 CCACTAGCATATGTACTATTGGGCT 60.046 44.000 14.14 0.00 36.21 5.19
2022 2163 5.178797 CCACTAGCATATGTACTATTGGGC 58.821 45.833 14.14 0.00 36.21 5.36
2088 2229 2.856494 TAACCCACAGCTGGCCCA 60.856 61.111 19.93 0.00 36.00 5.36
2089 2230 2.361230 GTAACCCACAGCTGGCCC 60.361 66.667 19.93 0.00 36.00 5.80
2090 2231 1.675641 CAGTAACCCACAGCTGGCC 60.676 63.158 19.93 0.00 36.00 5.36
2091 2232 1.675641 CCAGTAACCCACAGCTGGC 60.676 63.158 19.93 0.00 41.46 4.85
2092 2233 1.002134 CCCAGTAACCCACAGCTGG 60.002 63.158 19.93 6.95 45.86 4.85
2093 2234 0.400213 TTCCCAGTAACCCACAGCTG 59.600 55.000 13.48 13.48 0.00 4.24
2094 2235 1.372501 ATTCCCAGTAACCCACAGCT 58.627 50.000 0.00 0.00 0.00 4.24
2095 2236 2.215942 AATTCCCAGTAACCCACAGC 57.784 50.000 0.00 0.00 0.00 4.40
2096 2237 3.496331 ACAAATTCCCAGTAACCCACAG 58.504 45.455 0.00 0.00 0.00 3.66
2097 2238 3.603965 ACAAATTCCCAGTAACCCACA 57.396 42.857 0.00 0.00 0.00 4.17
2098 2239 3.892588 TGAACAAATTCCCAGTAACCCAC 59.107 43.478 0.00 0.00 33.49 4.61
2099 2240 3.892588 GTGAACAAATTCCCAGTAACCCA 59.107 43.478 0.00 0.00 33.49 4.51
2100 2241 3.257375 GGTGAACAAATTCCCAGTAACCC 59.743 47.826 0.00 0.00 33.49 4.11
2101 2242 3.257375 GGGTGAACAAATTCCCAGTAACC 59.743 47.826 0.00 0.00 39.68 2.85
2102 2243 4.149598 AGGGTGAACAAATTCCCAGTAAC 58.850 43.478 0.00 0.00 42.12 2.50
2103 2244 4.463050 AGGGTGAACAAATTCCCAGTAA 57.537 40.909 0.00 0.00 42.12 2.24
2104 2245 4.351407 TGTAGGGTGAACAAATTCCCAGTA 59.649 41.667 0.00 0.00 42.12 2.74
2117 2258 5.781306 TCAAGTATACCAACTGTAGGGTGAA 59.219 40.000 12.75 0.62 38.06 3.18
2225 2366 2.038033 GTGGTGTAACTGCCTAACTGGA 59.962 50.000 0.00 0.00 35.50 3.86
2227 2368 2.806244 GTGTGGTGTAACTGCCTAACTG 59.194 50.000 0.00 0.00 36.74 3.16
2228 2369 2.547218 CGTGTGGTGTAACTGCCTAACT 60.547 50.000 0.00 0.00 36.74 2.24
2229 2370 1.796459 CGTGTGGTGTAACTGCCTAAC 59.204 52.381 0.00 0.00 36.74 2.34
2230 2371 1.687660 TCGTGTGGTGTAACTGCCTAA 59.312 47.619 0.00 0.00 36.74 2.69
2231 2372 1.330234 TCGTGTGGTGTAACTGCCTA 58.670 50.000 0.00 0.00 36.74 3.93
2232 2373 0.685097 ATCGTGTGGTGTAACTGCCT 59.315 50.000 0.00 0.00 36.74 4.75
2233 2374 1.519408 AATCGTGTGGTGTAACTGCC 58.481 50.000 0.00 0.00 36.74 4.85
2234 2375 2.289547 ACAAATCGTGTGGTGTAACTGC 59.710 45.455 0.00 0.00 39.72 4.40
2248 2389 6.128607 TGCATTAAAGCATGGAAAACAAATCG 60.129 34.615 0.28 0.00 40.11 3.34
2288 2429 4.338879 ACCATTTGACTCTCATTTCCAGG 58.661 43.478 0.00 0.00 0.00 4.45
2395 2536 1.336440 CCCATCGTGCAAGAAACAACA 59.664 47.619 6.39 0.00 0.00 3.33
2409 2550 2.101582 CCTACCTGAACTCTTCCCATCG 59.898 54.545 0.00 0.00 0.00 3.84
2426 2567 5.470047 TGAACTGAGAAGAGGAAACCTAC 57.530 43.478 0.00 0.00 31.76 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.