Multiple sequence alignment - TraesCS6B01G156400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G156400 chr6B 100.000 2291 0 0 1 2291 159146927 159149217 0.000000e+00 4231
1 TraesCS6B01G156400 chr6B 87.419 1383 171 3 1 1381 412284212 412282831 0.000000e+00 1587
2 TraesCS6B01G156400 chr6B 87.094 1387 173 4 1 1381 708043398 708042012 0.000000e+00 1565
3 TraesCS6B01G156400 chr6B 94.512 164 9 0 1955 2118 368489050 368489213 1.050000e-63 254
4 TraesCS6B01G156400 chr7B 98.188 1380 23 2 1 1379 580877361 580875983 0.000000e+00 2409
5 TraesCS6B01G156400 chr1B 97.683 1381 30 2 1 1380 321687303 321688682 0.000000e+00 2372
6 TraesCS6B01G156400 chr1B 87.274 1383 171 5 1 1381 550680009 550681388 0.000000e+00 1574
7 TraesCS6B01G156400 chr1B 94.611 167 8 1 1955 2121 83203809 83203644 8.120000e-65 257
8 TraesCS6B01G156400 chr3D 96.671 1382 43 3 1 1381 433508730 433510109 0.000000e+00 2294
9 TraesCS6B01G156400 chr3D 95.062 162 8 0 1962 2123 613760509 613760348 2.920000e-64 255
10 TraesCS6B01G156400 chr3D 94.479 163 9 0 1956 2118 23144021 23144183 3.780000e-63 252
11 TraesCS6B01G156400 chr3D 93.452 168 10 1 1957 2124 428438283 428438117 4.890000e-62 248
12 TraesCS6B01G156400 chr4A 91.100 1382 120 2 1 1381 67263559 67262180 0.000000e+00 1868
13 TraesCS6B01G156400 chr2A 90.338 1273 122 1 91 1362 554506905 554508177 0.000000e+00 1668
14 TraesCS6B01G156400 chr2B 87.202 1383 175 2 1 1381 383360205 383361587 0.000000e+00 1572
15 TraesCS6B01G156400 chr4B 96.207 580 22 0 1381 1960 435296473 435295894 0.000000e+00 950
16 TraesCS6B01G156400 chr4B 82.090 603 80 14 1381 1960 338452360 338452957 7.350000e-135 490
17 TraesCS6B01G156400 chr4B 96.512 172 6 0 2120 2291 435295894 435295723 3.730000e-73 285
18 TraesCS6B01G156400 chr6A 83.612 598 74 13 1381 1960 403001425 403000834 7.200000e-150 540
19 TraesCS6B01G156400 chr6A 86.188 181 16 4 2120 2291 325277980 325277800 1.080000e-43 187
20 TraesCS6B01G156400 chr7A 83.472 599 73 15 1381 1960 690828683 690829274 3.350000e-148 534
21 TraesCS6B01G156400 chr5D 82.255 603 80 13 1381 1960 152782858 152783456 1.580000e-136 496
22 TraesCS6B01G156400 chr5B 96.319 163 6 0 1962 2124 491710531 491710369 3.750000e-68 268
23 TraesCS6B01G156400 chr3B 96.250 160 6 0 1962 2121 126006043 126005884 1.750000e-66 263
24 TraesCS6B01G156400 chr3B 95.679 162 7 0 1963 2124 428100892 428100731 6.280000e-66 261
25 TraesCS6B01G156400 chrUn 94.012 167 9 1 1952 2118 141680739 141680904 3.780000e-63 252
26 TraesCS6B01G156400 chr3A 88.679 159 6 5 2142 2291 711419015 711418860 1.400000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G156400 chr6B 159146927 159149217 2290 False 4231.0 4231 100.0000 1 2291 1 chr6B.!!$F1 2290
1 TraesCS6B01G156400 chr6B 412282831 412284212 1381 True 1587.0 1587 87.4190 1 1381 1 chr6B.!!$R1 1380
2 TraesCS6B01G156400 chr6B 708042012 708043398 1386 True 1565.0 1565 87.0940 1 1381 1 chr6B.!!$R2 1380
3 TraesCS6B01G156400 chr7B 580875983 580877361 1378 True 2409.0 2409 98.1880 1 1379 1 chr7B.!!$R1 1378
4 TraesCS6B01G156400 chr1B 321687303 321688682 1379 False 2372.0 2372 97.6830 1 1380 1 chr1B.!!$F1 1379
5 TraesCS6B01G156400 chr1B 550680009 550681388 1379 False 1574.0 1574 87.2740 1 1381 1 chr1B.!!$F2 1380
6 TraesCS6B01G156400 chr3D 433508730 433510109 1379 False 2294.0 2294 96.6710 1 1381 1 chr3D.!!$F2 1380
7 TraesCS6B01G156400 chr4A 67262180 67263559 1379 True 1868.0 1868 91.1000 1 1381 1 chr4A.!!$R1 1380
8 TraesCS6B01G156400 chr2A 554506905 554508177 1272 False 1668.0 1668 90.3380 91 1362 1 chr2A.!!$F1 1271
9 TraesCS6B01G156400 chr2B 383360205 383361587 1382 False 1572.0 1572 87.2020 1 1381 1 chr2B.!!$F1 1380
10 TraesCS6B01G156400 chr4B 435295723 435296473 750 True 617.5 950 96.3595 1381 2291 2 chr4B.!!$R1 910
11 TraesCS6B01G156400 chr4B 338452360 338452957 597 False 490.0 490 82.0900 1381 1960 1 chr4B.!!$F1 579
12 TraesCS6B01G156400 chr6A 403000834 403001425 591 True 540.0 540 83.6120 1381 1960 1 chr6A.!!$R2 579
13 TraesCS6B01G156400 chr7A 690828683 690829274 591 False 534.0 534 83.4720 1381 1960 1 chr7A.!!$F1 579
14 TraesCS6B01G156400 chr5D 152782858 152783456 598 False 496.0 496 82.2550 1381 1960 1 chr5D.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 870 0.597568 TCTTCGCTTGGTTGGCAATG 59.402 50.0 1.92 0.0 0.0 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 2301 0.398948 ATTCATGGGATGGGGGCAAC 60.399 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
291 298 1.846007 TGGGAACAAGTGTGCAAGTT 58.154 45.000 0.00 0.00 37.44 2.66
324 331 1.783365 AGGCCTGGGAATCCTAAATCC 59.217 52.381 3.11 0.00 34.85 3.01
553 560 6.126332 TGGCCCCTAAAATATATGAGTTGTCA 60.126 38.462 0.00 0.00 37.02 3.58
806 814 4.211125 ACTGACACTGAGATGGTATCGAT 58.789 43.478 2.16 2.16 0.00 3.59
861 870 0.597568 TCTTCGCTTGGTTGGCAATG 59.402 50.000 1.92 0.00 0.00 2.82
1106 1115 5.536161 ACAATGCTACCAAGAAGACACAATT 59.464 36.000 0.00 0.00 0.00 2.32
1481 1503 1.246649 ACAATCTGCCAATTGTCGCA 58.753 45.000 4.43 6.94 44.53 5.10
1484 1506 1.753930 ATCTGCCAATTGTCGCATCA 58.246 45.000 9.42 1.58 33.78 3.07
1650 1672 1.745320 AACTGAGGAACCAGTCGCGT 61.745 55.000 5.77 0.00 45.82 6.01
1686 1708 7.504238 ACCACTGACACCACTTGAATTAAATTA 59.496 33.333 0.00 0.00 0.00 1.40
1690 1712 9.612620 CTGACACCACTTGAATTAAATTAGAAC 57.387 33.333 0.00 0.00 0.00 3.01
1741 1772 0.326264 TTCTGAGAAAGAGGGCAGGC 59.674 55.000 0.00 0.00 35.91 4.85
1893 1924 1.270305 TGGAGAAAGAGTGGCTCAACG 60.270 52.381 0.00 0.00 32.06 4.10
1961 1992 6.183360 GGAAGGAATAATGCGACTATATGTGC 60.183 42.308 0.00 0.00 0.00 4.57
1962 1993 6.042638 AGGAATAATGCGACTATATGTGCT 57.957 37.500 0.00 0.00 0.00 4.40
1963 1994 6.102663 AGGAATAATGCGACTATATGTGCTC 58.897 40.000 0.00 0.00 0.00 4.26
1964 1995 5.292101 GGAATAATGCGACTATATGTGCTCC 59.708 44.000 0.00 0.00 0.00 4.70
1965 1996 2.751166 ATGCGACTATATGTGCTCCC 57.249 50.000 0.00 0.00 0.00 4.30
1966 1997 1.704641 TGCGACTATATGTGCTCCCT 58.295 50.000 0.00 0.00 0.00 4.20
1967 1998 1.613925 TGCGACTATATGTGCTCCCTC 59.386 52.381 0.00 0.00 0.00 4.30
1968 1999 1.067495 GCGACTATATGTGCTCCCTCC 60.067 57.143 0.00 0.00 0.00 4.30
1969 2000 1.200252 CGACTATATGTGCTCCCTCCG 59.800 57.143 0.00 0.00 0.00 4.63
1970 2001 2.240279 GACTATATGTGCTCCCTCCGT 58.760 52.381 0.00 0.00 0.00 4.69
1971 2002 2.628657 GACTATATGTGCTCCCTCCGTT 59.371 50.000 0.00 0.00 0.00 4.44
1972 2003 2.628657 ACTATATGTGCTCCCTCCGTTC 59.371 50.000 0.00 0.00 0.00 3.95
1973 2004 0.759346 ATATGTGCTCCCTCCGTTCC 59.241 55.000 0.00 0.00 0.00 3.62
1974 2005 0.325296 TATGTGCTCCCTCCGTTCCT 60.325 55.000 0.00 0.00 0.00 3.36
1975 2006 0.325296 ATGTGCTCCCTCCGTTCCTA 60.325 55.000 0.00 0.00 0.00 2.94
1976 2007 0.543410 TGTGCTCCCTCCGTTCCTAA 60.543 55.000 0.00 0.00 0.00 2.69
1977 2008 0.611714 GTGCTCCCTCCGTTCCTAAA 59.388 55.000 0.00 0.00 0.00 1.85
1978 2009 1.209747 GTGCTCCCTCCGTTCCTAAAT 59.790 52.381 0.00 0.00 0.00 1.40
1979 2010 1.209504 TGCTCCCTCCGTTCCTAAATG 59.790 52.381 0.00 0.00 0.00 2.32
1980 2011 1.209747 GCTCCCTCCGTTCCTAAATGT 59.790 52.381 0.00 0.00 0.00 2.71
1981 2012 2.433239 GCTCCCTCCGTTCCTAAATGTA 59.567 50.000 0.00 0.00 0.00 2.29
1982 2013 3.118519 GCTCCCTCCGTTCCTAAATGTAA 60.119 47.826 0.00 0.00 0.00 2.41
1983 2014 4.694339 CTCCCTCCGTTCCTAAATGTAAG 58.306 47.826 0.00 0.00 0.00 2.34
1984 2015 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
1985 2016 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
1986 2017 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
1987 2018 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1988 2019 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1989 2020 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
1990 2021 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
1991 2022 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
1992 2023 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
1993 2024 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
2030 2061 7.770366 AACTACATACGGATGTATATGGACA 57.230 36.000 20.64 0.00 45.42 4.02
2031 2062 7.956328 ACTACATACGGATGTATATGGACAT 57.044 36.000 20.64 0.00 45.42 3.06
2032 2063 9.470399 AACTACATACGGATGTATATGGACATA 57.530 33.333 20.64 0.00 45.42 2.29
2033 2064 9.642343 ACTACATACGGATGTATATGGACATAT 57.358 33.333 20.64 9.53 45.42 1.78
2051 2082 9.817809 TGGACATATTTTAGAGTGTAGATTCAC 57.182 33.333 0.00 0.00 38.46 3.18
2063 2094 7.856145 AGTGTAGATTCACTCATTTTGATCC 57.144 36.000 0.00 0.00 44.07 3.36
2064 2095 6.536582 AGTGTAGATTCACTCATTTTGATCCG 59.463 38.462 0.00 0.00 44.07 4.18
2065 2096 6.313905 GTGTAGATTCACTCATTTTGATCCGT 59.686 38.462 0.00 0.00 35.68 4.69
2066 2097 7.491372 GTGTAGATTCACTCATTTTGATCCGTA 59.509 37.037 0.00 0.00 35.68 4.02
2067 2098 8.204160 TGTAGATTCACTCATTTTGATCCGTAT 58.796 33.333 0.00 0.00 0.00 3.06
2068 2099 7.721286 AGATTCACTCATTTTGATCCGTATC 57.279 36.000 0.00 0.00 0.00 2.24
2069 2100 7.504403 AGATTCACTCATTTTGATCCGTATCT 58.496 34.615 0.00 0.00 32.93 1.98
2070 2101 6.908870 TTCACTCATTTTGATCCGTATCTG 57.091 37.500 0.00 0.00 32.93 2.90
2071 2102 5.359756 TCACTCATTTTGATCCGTATCTGG 58.640 41.667 0.00 0.00 32.93 3.86
2072 2103 5.104941 TCACTCATTTTGATCCGTATCTGGT 60.105 40.000 0.00 0.00 32.93 4.00
2073 2104 5.586243 CACTCATTTTGATCCGTATCTGGTT 59.414 40.000 0.00 0.00 32.93 3.67
2074 2105 5.817816 ACTCATTTTGATCCGTATCTGGTTC 59.182 40.000 0.00 0.00 32.93 3.62
2075 2106 5.739959 TCATTTTGATCCGTATCTGGTTCA 58.260 37.500 0.00 0.00 36.25 3.18
2076 2107 6.356556 TCATTTTGATCCGTATCTGGTTCAT 58.643 36.000 0.00 0.00 37.52 2.57
2077 2108 7.505258 TCATTTTGATCCGTATCTGGTTCATA 58.495 34.615 0.00 0.00 37.52 2.15
2078 2109 7.657354 TCATTTTGATCCGTATCTGGTTCATAG 59.343 37.037 0.00 0.00 37.52 2.23
2079 2110 6.479972 TTTGATCCGTATCTGGTTCATAGT 57.520 37.500 0.00 0.00 37.52 2.12
2080 2111 7.591421 TTTGATCCGTATCTGGTTCATAGTA 57.409 36.000 0.00 0.00 37.52 1.82
2081 2112 7.591421 TTGATCCGTATCTGGTTCATAGTAA 57.409 36.000 0.00 0.00 37.52 2.24
2082 2113 7.591421 TGATCCGTATCTGGTTCATAGTAAA 57.409 36.000 0.00 0.00 33.78 2.01
2083 2114 8.014070 TGATCCGTATCTGGTTCATAGTAAAA 57.986 34.615 0.00 0.00 33.78 1.52
2084 2115 8.647796 TGATCCGTATCTGGTTCATAGTAAAAT 58.352 33.333 0.00 0.00 33.78 1.82
2085 2116 9.141400 GATCCGTATCTGGTTCATAGTAAAATC 57.859 37.037 0.00 0.00 0.00 2.17
2086 2117 8.246430 TCCGTATCTGGTTCATAGTAAAATCT 57.754 34.615 0.00 0.00 0.00 2.40
2087 2118 8.358148 TCCGTATCTGGTTCATAGTAAAATCTC 58.642 37.037 0.00 0.00 0.00 2.75
2088 2119 8.361139 CCGTATCTGGTTCATAGTAAAATCTCT 58.639 37.037 0.00 0.00 0.00 3.10
2115 2146 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2116 2147 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2117 2148 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2118 2149 6.842807 AGACTTATATTTAGGAACGGAGGGAA 59.157 38.462 0.00 0.00 0.00 3.97
2119 2150 7.513091 AGACTTATATTTAGGAACGGAGGGAAT 59.487 37.037 0.00 0.00 0.00 3.01
2141 2172 4.067972 ACAAGCGTTGAGTAAAGGAAGA 57.932 40.909 5.01 0.00 0.00 2.87
2251 2282 9.406828 GGTGATTTATTTCCTCAAACTTTGTAC 57.593 33.333 1.44 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
291 298 1.281867 CCAGGCCTCCATGTAGTTTGA 59.718 52.381 0.00 0.00 0.00 2.69
553 560 5.760253 TCGAACTGAGCAATTCTTCTTCTTT 59.240 36.000 0.00 0.00 0.00 2.52
770 778 2.488153 GTGTCAGTATGGCCAAAGAACC 59.512 50.000 10.96 0.00 42.68 3.62
806 814 0.878416 CGCCCAAATCTTCCAAACGA 59.122 50.000 0.00 0.00 0.00 3.85
861 870 3.065371 CCGCTGTCCAAATCCTATTGTTC 59.935 47.826 0.00 0.00 0.00 3.18
1106 1115 0.884704 GGAAGCAAGTGGTCTTCGCA 60.885 55.000 0.00 0.00 39.54 5.10
1481 1503 5.010922 TGAAATAAGTGCACTGCCTTTTGAT 59.989 36.000 22.49 3.34 0.00 2.57
1484 1506 4.935352 TGAAATAAGTGCACTGCCTTTT 57.065 36.364 22.49 16.69 0.00 2.27
1571 1593 3.417069 ACAGCCAAGTTAGTATGTGCA 57.583 42.857 0.00 0.00 0.00 4.57
1572 1594 4.332819 CCTAACAGCCAAGTTAGTATGTGC 59.667 45.833 15.78 0.00 45.98 4.57
1650 1672 1.454847 GTCAGTGGTTGGGTTGGCA 60.455 57.895 0.00 0.00 0.00 4.92
1686 1708 7.546250 TTCTTACCTGATCTCTTTCTGTTCT 57.454 36.000 0.00 0.00 0.00 3.01
1690 1712 6.976636 GGTTTCTTACCTGATCTCTTTCTG 57.023 41.667 0.00 0.00 44.10 3.02
1741 1772 1.283029 TGCAGATTCCCCTTCTTCCTG 59.717 52.381 0.00 0.00 0.00 3.86
1893 1924 1.446966 GTCTTCTCTGGCAGCCGTC 60.447 63.158 10.34 0.00 0.00 4.79
1961 1992 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1962 1993 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1963 1994 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1964 1995 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1965 1996 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
1966 1997 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
1967 1998 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
2025 2056 9.817809 GTGAATCTACACTCTAAAATATGTCCA 57.182 33.333 0.00 0.00 37.73 4.02
2040 2071 6.313905 ACGGATCAAAATGAGTGAATCTACAC 59.686 38.462 0.00 0.00 40.60 2.90
2041 2072 6.406370 ACGGATCAAAATGAGTGAATCTACA 58.594 36.000 0.00 0.00 0.00 2.74
2042 2073 6.910536 ACGGATCAAAATGAGTGAATCTAC 57.089 37.500 0.00 0.00 0.00 2.59
2043 2074 8.642432 AGATACGGATCAAAATGAGTGAATCTA 58.358 33.333 10.99 0.00 34.17 1.98
2044 2075 7.440556 CAGATACGGATCAAAATGAGTGAATCT 59.559 37.037 10.99 0.00 34.17 2.40
2045 2076 7.307632 CCAGATACGGATCAAAATGAGTGAATC 60.308 40.741 10.99 0.00 34.17 2.52
2046 2077 6.484643 CCAGATACGGATCAAAATGAGTGAAT 59.515 38.462 10.99 0.00 34.17 2.57
2047 2078 5.817296 CCAGATACGGATCAAAATGAGTGAA 59.183 40.000 10.99 0.00 34.17 3.18
2048 2079 5.104941 ACCAGATACGGATCAAAATGAGTGA 60.105 40.000 10.99 0.00 34.17 3.41
2049 2080 5.118990 ACCAGATACGGATCAAAATGAGTG 58.881 41.667 10.99 0.00 34.17 3.51
2050 2081 5.359194 ACCAGATACGGATCAAAATGAGT 57.641 39.130 10.99 0.00 34.17 3.41
2051 2082 5.817296 TGAACCAGATACGGATCAAAATGAG 59.183 40.000 10.99 0.00 35.14 2.90
2052 2083 5.739959 TGAACCAGATACGGATCAAAATGA 58.260 37.500 10.99 0.00 35.14 2.57
2053 2084 6.624352 ATGAACCAGATACGGATCAAAATG 57.376 37.500 10.99 0.00 40.75 2.32
2054 2085 7.509546 ACTATGAACCAGATACGGATCAAAAT 58.490 34.615 10.99 0.00 40.75 1.82
2055 2086 6.884832 ACTATGAACCAGATACGGATCAAAA 58.115 36.000 10.99 0.00 40.75 2.44
2056 2087 6.479972 ACTATGAACCAGATACGGATCAAA 57.520 37.500 10.99 0.00 40.75 2.69
2057 2088 7.591421 TTACTATGAACCAGATACGGATCAA 57.409 36.000 10.99 0.00 40.75 2.57
2058 2089 7.591421 TTTACTATGAACCAGATACGGATCA 57.409 36.000 10.99 0.00 41.51 2.92
2059 2090 9.141400 GATTTTACTATGAACCAGATACGGATC 57.859 37.037 0.00 0.00 0.00 3.36
2060 2091 8.871125 AGATTTTACTATGAACCAGATACGGAT 58.129 33.333 0.00 0.00 0.00 4.18
2061 2092 8.246430 AGATTTTACTATGAACCAGATACGGA 57.754 34.615 0.00 0.00 0.00 4.69
2062 2093 8.361139 AGAGATTTTACTATGAACCAGATACGG 58.639 37.037 0.00 0.00 0.00 4.02
2089 2120 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2090 2121 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2091 2122 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2092 2123 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2093 2124 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2094 2125 6.661304 TCCCTCCGTTCCTAAATATAAGTC 57.339 41.667 0.00 0.00 0.00 3.01
2095 2126 7.628501 ATTCCCTCCGTTCCTAAATATAAGT 57.371 36.000 0.00 0.00 0.00 2.24
2096 2127 8.591072 TGTATTCCCTCCGTTCCTAAATATAAG 58.409 37.037 0.00 0.00 0.00 1.73
2097 2128 8.495160 TGTATTCCCTCCGTTCCTAAATATAA 57.505 34.615 0.00 0.00 0.00 0.98
2098 2129 8.495160 TTGTATTCCCTCCGTTCCTAAATATA 57.505 34.615 0.00 0.00 0.00 0.86
2099 2130 7.383156 TTGTATTCCCTCCGTTCCTAAATAT 57.617 36.000 0.00 0.00 0.00 1.28
2100 2131 6.687139 GCTTGTATTCCCTCCGTTCCTAAATA 60.687 42.308 0.00 0.00 0.00 1.40
2101 2132 5.681639 CTTGTATTCCCTCCGTTCCTAAAT 58.318 41.667 0.00 0.00 0.00 1.40
2102 2133 4.624604 GCTTGTATTCCCTCCGTTCCTAAA 60.625 45.833 0.00 0.00 0.00 1.85
2103 2134 3.118519 GCTTGTATTCCCTCCGTTCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
2104 2135 2.433239 GCTTGTATTCCCTCCGTTCCTA 59.567 50.000 0.00 0.00 0.00 2.94
2105 2136 1.209747 GCTTGTATTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
2106 2137 1.664873 GCTTGTATTCCCTCCGTTCC 58.335 55.000 0.00 0.00 0.00 3.62
2107 2138 1.287425 CGCTTGTATTCCCTCCGTTC 58.713 55.000 0.00 0.00 0.00 3.95
2108 2139 0.611714 ACGCTTGTATTCCCTCCGTT 59.388 50.000 0.00 0.00 0.00 4.44
2109 2140 0.611714 AACGCTTGTATTCCCTCCGT 59.388 50.000 0.00 0.00 0.00 4.69
2110 2141 1.006832 CAACGCTTGTATTCCCTCCG 58.993 55.000 0.00 0.00 0.00 4.63
2111 2142 2.280628 CTCAACGCTTGTATTCCCTCC 58.719 52.381 0.00 0.00 0.00 4.30
2112 2143 2.973945 ACTCAACGCTTGTATTCCCTC 58.026 47.619 0.00 0.00 0.00 4.30
2113 2144 4.546829 TTACTCAACGCTTGTATTCCCT 57.453 40.909 0.00 0.00 0.00 4.20
2114 2145 4.094442 CCTTTACTCAACGCTTGTATTCCC 59.906 45.833 0.00 0.00 0.00 3.97
2115 2146 4.933400 TCCTTTACTCAACGCTTGTATTCC 59.067 41.667 0.00 0.00 0.00 3.01
2116 2147 6.367969 TCTTCCTTTACTCAACGCTTGTATTC 59.632 38.462 0.00 0.00 0.00 1.75
2117 2148 6.228258 TCTTCCTTTACTCAACGCTTGTATT 58.772 36.000 0.00 0.00 0.00 1.89
2118 2149 5.790593 TCTTCCTTTACTCAACGCTTGTAT 58.209 37.500 0.00 0.00 0.00 2.29
2119 2150 5.204409 TCTTCCTTTACTCAACGCTTGTA 57.796 39.130 0.00 0.00 0.00 2.41
2251 2282 1.202651 ACCAACCGTTCCTCAGTTGAG 60.203 52.381 2.09 2.09 42.76 3.02
2256 2287 1.515521 GGCAACCAACCGTTCCTCAG 61.516 60.000 0.00 0.00 29.93 3.35
2270 2301 0.398948 ATTCATGGGATGGGGGCAAC 60.399 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.