Multiple sequence alignment - TraesCS6B01G155000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G155000 chr6B 100.000 4100 0 0 1 4100 158150790 158146691 0.000000e+00 7572
1 TraesCS6B01G155000 chr6B 93.504 2771 177 2 937 3707 159402015 159404782 0.000000e+00 4117
2 TraesCS6B01G155000 chr6B 85.144 2181 299 16 940 3110 158103943 158101778 0.000000e+00 2209
3 TraesCS6B01G155000 chr6B 92.887 239 16 1 3863 4100 159405477 159405715 3.030000e-91 346
4 TraesCS6B01G155000 chr6B 87.912 273 25 6 106 372 158149932 158149662 8.560000e-82 315
5 TraesCS6B01G155000 chr6B 89.212 241 21 5 3863 4100 159597862 159598100 3.100000e-76 296
6 TraesCS6B01G155000 chr6B 93.197 147 7 3 8 151 159401875 159402021 3.210000e-51 213
7 TraesCS6B01G155000 chr6B 86.010 193 23 2 185 373 159402016 159402208 1.930000e-48 204
8 TraesCS6B01G155000 chr6D 95.387 3685 122 13 1 3677 83125711 83122067 0.000000e+00 5819
9 TraesCS6B01G155000 chr6D 92.857 2940 202 4 937 3871 83540547 83543483 0.000000e+00 4259
10 TraesCS6B01G155000 chr6D 86.059 2195 279 20 940 3123 83057984 83055806 0.000000e+00 2333
11 TraesCS6B01G155000 chr6D 86.236 2107 271 18 1025 3123 83046834 83044739 0.000000e+00 2266
12 TraesCS6B01G155000 chr6D 94.360 461 17 3 3418 3871 83104994 83104536 0.000000e+00 699
13 TraesCS6B01G155000 chr6D 86.607 336 33 4 3499 3832 84028491 84028816 1.080000e-95 361
14 TraesCS6B01G155000 chr6D 90.417 240 18 2 3863 4100 83114840 83114604 1.110000e-80 311
15 TraesCS6B01G155000 chr6D 87.732 269 25 6 110 372 83124859 83124593 1.430000e-79 307
16 TraesCS6B01G155000 chr6D 89.712 243 19 4 3863 4100 84029314 84029555 5.150000e-79 305
17 TraesCS6B01G155000 chr6D 83.333 246 31 7 3863 4100 83104021 83103778 6.900000e-53 219
18 TraesCS6B01G155000 chr6D 84.454 238 20 9 630 862 83827285 83827510 6.900000e-53 219
19 TraesCS6B01G155000 chr6D 84.549 233 18 10 636 862 83539939 83540159 8.930000e-52 215
20 TraesCS6B01G155000 chr6D 82.902 193 29 2 185 373 83540548 83540740 1.960000e-38 171
21 TraesCS6B01G155000 chr6D 86.842 152 13 4 1 151 83827765 83827910 3.280000e-36 163
22 TraesCS6B01G155000 chr6D 81.000 200 26 8 182 369 83057990 83057791 9.180000e-32 148
23 TraesCS6B01G155000 chr6A 95.108 2882 111 6 897 3777 100185183 100182331 0.000000e+00 4514
24 TraesCS6B01G155000 chr6A 93.333 2835 171 6 937 3770 100802991 100805808 0.000000e+00 4172
25 TraesCS6B01G155000 chr6A 93.529 2380 152 2 937 3314 100760921 100763300 0.000000e+00 3541
26 TraesCS6B01G155000 chr6A 94.923 847 27 6 1 839 100186023 100185185 0.000000e+00 1312
27 TraesCS6B01G155000 chr6A 91.165 532 34 6 3320 3850 100763260 100763779 0.000000e+00 710
28 TraesCS6B01G155000 chr6A 92.857 490 31 3 3320 3808 100809897 100810383 0.000000e+00 708
29 TraesCS6B01G155000 chr6A 88.406 276 26 5 859 1129 100185918 100185644 1.100000e-85 327
30 TraesCS6B01G155000 chr6A 85.470 234 12 3 3863 4095 100808958 100809170 1.480000e-54 224
31 TraesCS6B01G155000 chr6A 92.000 150 9 3 4 151 100760779 100760927 1.490000e-49 207
32 TraesCS6B01G155000 chr6A 86.010 193 23 2 185 373 100760922 100761114 1.930000e-48 204
33 TraesCS6B01G155000 chr6A 79.283 251 21 11 630 851 100760289 100760537 3.300000e-31 147
34 TraesCS6B01G155000 chr6A 91.919 99 8 0 630 728 100802366 100802464 5.530000e-29 139
35 TraesCS6B01G155000 chr6A 79.581 191 30 7 185 373 100802992 100803175 1.200000e-25 128
36 TraesCS6B01G155000 chr4B 75.000 412 64 21 3430 3833 636107536 636107916 1.970000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G155000 chr6B 158146691 158150790 4099 True 3943.500000 7572 93.956000 1 4100 2 chr6B.!!$R2 4099
1 TraesCS6B01G155000 chr6B 158101778 158103943 2165 True 2209.000000 2209 85.144000 940 3110 1 chr6B.!!$R1 2170
2 TraesCS6B01G155000 chr6B 159401875 159405715 3840 False 1220.000000 4117 91.399500 8 4100 4 chr6B.!!$F2 4092
3 TraesCS6B01G155000 chr6D 83122067 83125711 3644 True 3063.000000 5819 91.559500 1 3677 2 chr6D.!!$R5 3676
4 TraesCS6B01G155000 chr6D 83044739 83046834 2095 True 2266.000000 2266 86.236000 1025 3123 1 chr6D.!!$R1 2098
5 TraesCS6B01G155000 chr6D 83539939 83543483 3544 False 1548.333333 4259 86.769333 185 3871 3 chr6D.!!$F1 3686
6 TraesCS6B01G155000 chr6D 83055806 83057990 2184 True 1240.500000 2333 83.529500 182 3123 2 chr6D.!!$R3 2941
7 TraesCS6B01G155000 chr6D 83103778 83104994 1216 True 459.000000 699 88.846500 3418 4100 2 chr6D.!!$R4 682
8 TraesCS6B01G155000 chr6D 84028491 84029555 1064 False 333.000000 361 88.159500 3499 4100 2 chr6D.!!$F3 601
9 TraesCS6B01G155000 chr6A 100182331 100186023 3692 True 2051.000000 4514 92.812333 1 3777 3 chr6A.!!$R1 3776
10 TraesCS6B01G155000 chr6A 100802366 100805808 3442 False 1479.666667 4172 88.277667 185 3770 3 chr6A.!!$F2 3585
11 TraesCS6B01G155000 chr6A 100760289 100763779 3490 False 961.800000 3541 88.397400 4 3850 5 chr6A.!!$F1 3846
12 TraesCS6B01G155000 chr6A 100808958 100810383 1425 False 466.000000 708 89.163500 3320 4095 2 chr6A.!!$F3 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 631 0.108472 CAGAGATGAGCTTCCACGCA 60.108 55.0 0.00 0.0 0.00 5.24 F
632 634 0.392193 AGATGAGCTTCCACGCAAGG 60.392 55.0 0.00 0.0 46.39 3.61 F
2086 2498 0.319900 CAAGCTGACTGCACTACGGT 60.320 55.0 7.11 0.0 45.94 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 2158 0.182061 TGATGCCATCAAGAGCTCCC 59.818 55.0 10.93 0.0 36.11 4.30 R
2584 2996 1.090052 GCACTGGGCGTGAGGTATTC 61.090 60.0 0.00 0.0 46.81 1.75 R
3214 3626 0.254178 ATCATTGGAGCGCCTCTTGT 59.746 50.0 8.34 0.0 34.31 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 201 2.806244 GTTGCTAGTTTCACCACGACAT 59.194 45.455 0.00 0.00 0.00 3.06
222 224 4.154015 TCGTGCATCCACTATTTTTCACAG 59.846 41.667 0.00 0.00 39.86 3.66
229 231 7.651808 CATCCACTATTTTTCACAGAACAAGT 58.348 34.615 0.00 0.00 0.00 3.16
231 233 8.149973 TCCACTATTTTTCACAGAACAAGTAC 57.850 34.615 0.00 0.00 0.00 2.73
232 234 7.771361 TCCACTATTTTTCACAGAACAAGTACA 59.229 33.333 0.00 0.00 0.00 2.90
233 235 7.855904 CCACTATTTTTCACAGAACAAGTACAC 59.144 37.037 0.00 0.00 0.00 2.90
234 236 8.612619 CACTATTTTTCACAGAACAAGTACACT 58.387 33.333 0.00 0.00 0.00 3.55
238 240 8.780846 TTTTTCACAGAACAAGTACACTAAGA 57.219 30.769 0.00 0.00 0.00 2.10
240 242 8.958119 TTTCACAGAACAAGTACACTAAGAAT 57.042 30.769 0.00 0.00 0.00 2.40
250 252 9.893305 ACAAGTACACTAAGAATTTTAACATGC 57.107 29.630 0.00 0.00 0.00 4.06
253 255 9.297037 AGTACACTAAGAATTTTAACATGCCTT 57.703 29.630 0.00 0.00 0.00 4.35
254 256 9.556030 GTACACTAAGAATTTTAACATGCCTTC 57.444 33.333 0.00 0.00 0.00 3.46
255 257 8.177119 ACACTAAGAATTTTAACATGCCTTCA 57.823 30.769 0.00 0.00 0.00 3.02
257 259 9.643693 CACTAAGAATTTTAACATGCCTTCATT 57.356 29.630 0.00 0.00 0.00 2.57
261 263 8.707938 AGAATTTTAACATGCCTTCATTTAGC 57.292 30.769 0.00 0.00 0.00 3.09
263 265 9.154847 GAATTTTAACATGCCTTCATTTAGCTT 57.845 29.630 0.00 0.00 0.00 3.74
266 268 5.573337 AACATGCCTTCATTTAGCTTCTC 57.427 39.130 0.00 0.00 0.00 2.87
267 269 4.853007 ACATGCCTTCATTTAGCTTCTCT 58.147 39.130 0.00 0.00 0.00 3.10
269 271 3.614092 TGCCTTCATTTAGCTTCTCTGG 58.386 45.455 0.00 0.00 0.00 3.86
275 277 1.813513 TTTAGCTTCTCTGGTGCTGC 58.186 50.000 0.00 0.00 37.62 5.25
277 279 0.248565 TAGCTTCTCTGGTGCTGCTG 59.751 55.000 0.00 0.00 37.62 4.41
279 281 1.003597 CTTCTCTGGTGCTGCTGCT 60.004 57.895 17.00 0.00 40.48 4.24
282 284 1.448189 CTCTGGTGCTGCTGCTCTC 60.448 63.158 17.00 7.90 40.48 3.20
289 291 0.604780 TGCTGCTGCTCTCTTTGGTC 60.605 55.000 17.00 0.00 40.48 4.02
291 293 1.724429 CTGCTGCTCTCTTTGGTCTC 58.276 55.000 0.00 0.00 0.00 3.36
293 295 1.274728 TGCTGCTCTCTTTGGTCTCTC 59.725 52.381 0.00 0.00 0.00 3.20
295 297 0.891373 TGCTCTCTTTGGTCTCTCCG 59.109 55.000 0.00 0.00 39.52 4.63
296 298 1.178276 GCTCTCTTTGGTCTCTCCGA 58.822 55.000 0.00 0.00 39.52 4.55
297 299 1.135228 GCTCTCTTTGGTCTCTCCGAC 60.135 57.143 0.00 0.00 42.07 4.79
298 300 2.163509 CTCTCTTTGGTCTCTCCGACA 58.836 52.381 0.00 0.00 44.68 4.35
299 301 2.558795 CTCTCTTTGGTCTCTCCGACAA 59.441 50.000 0.00 0.00 44.68 3.18
301 303 1.000955 TCTTTGGTCTCTCCGACAAGC 59.999 52.381 0.00 0.00 44.68 4.01
302 304 1.001406 CTTTGGTCTCTCCGACAAGCT 59.999 52.381 0.00 0.00 44.68 3.74
304 306 1.251527 TGGTCTCTCCGACAAGCTCC 61.252 60.000 0.00 0.00 44.68 4.70
305 307 0.968393 GGTCTCTCCGACAAGCTCCT 60.968 60.000 0.00 0.00 44.68 3.69
306 308 0.172352 GTCTCTCCGACAAGCTCCTG 59.828 60.000 0.00 0.00 42.37 3.86
307 309 1.153667 CTCTCCGACAAGCTCCTGC 60.154 63.158 0.00 0.00 40.05 4.85
308 310 1.881903 CTCTCCGACAAGCTCCTGCA 61.882 60.000 0.00 0.00 42.74 4.41
310 312 2.743928 CCGACAAGCTCCTGCACC 60.744 66.667 0.00 0.00 42.74 5.01
312 314 2.343758 GACAAGCTCCTGCACCGA 59.656 61.111 0.00 0.00 42.74 4.69
313 315 1.739562 GACAAGCTCCTGCACCGAG 60.740 63.158 2.24 2.24 42.74 4.63
337 339 0.338120 AGTAGCTCCCTTCTCCAGCT 59.662 55.000 0.00 0.00 45.59 4.24
339 341 0.397816 TAGCTCCCTTCTCCAGCTCC 60.398 60.000 0.00 0.00 42.65 4.70
342 344 1.380515 TCCCTTCTCCAGCTCCTCG 60.381 63.158 0.00 0.00 0.00 4.63
345 347 3.423162 CTTCTCCAGCTCCTCGCCG 62.423 68.421 0.00 0.00 40.39 6.46
360 362 3.610669 CCGGGCTCTCTCGGGATG 61.611 72.222 0.00 0.00 42.32 3.51
361 363 3.610669 CGGGCTCTCTCGGGATGG 61.611 72.222 0.00 0.00 0.00 3.51
362 364 3.934962 GGGCTCTCTCGGGATGGC 61.935 72.222 3.83 3.83 0.00 4.40
363 365 4.292178 GGCTCTCTCGGGATGGCG 62.292 72.222 0.00 0.00 0.00 5.69
364 366 4.292178 GCTCTCTCGGGATGGCGG 62.292 72.222 0.00 0.00 0.00 6.13
373 375 4.899239 GGATGGCGGCCTCACGAG 62.899 72.222 21.46 0.00 35.47 4.18
375 377 3.371097 GATGGCGGCCTCACGAGAA 62.371 63.158 21.46 0.00 35.47 2.87
376 378 2.650813 GATGGCGGCCTCACGAGAAT 62.651 60.000 21.46 1.83 35.47 2.40
378 380 2.586357 GCGGCCTCACGAGAATCC 60.586 66.667 0.00 0.00 35.47 3.01
379 381 2.892640 CGGCCTCACGAGAATCCA 59.107 61.111 0.00 0.00 35.47 3.41
380 382 1.227089 CGGCCTCACGAGAATCCAG 60.227 63.158 0.00 0.00 35.47 3.86
382 384 1.219124 GCCTCACGAGAATCCAGCA 59.781 57.895 0.00 0.00 0.00 4.41
383 385 0.809241 GCCTCACGAGAATCCAGCAG 60.809 60.000 0.00 0.00 0.00 4.24
384 386 0.809241 CCTCACGAGAATCCAGCAGC 60.809 60.000 0.00 0.00 0.00 5.25
386 388 0.538584 TCACGAGAATCCAGCAGCAT 59.461 50.000 0.00 0.00 0.00 3.79
389 391 1.209019 ACGAGAATCCAGCAGCATTCT 59.791 47.619 6.23 6.23 41.22 2.40
391 393 3.070734 ACGAGAATCCAGCAGCATTCTAT 59.929 43.478 6.47 0.00 39.09 1.98
393 395 4.083961 CGAGAATCCAGCAGCATTCTATTG 60.084 45.833 6.47 0.00 39.09 1.90
394 396 5.045012 AGAATCCAGCAGCATTCTATTGA 57.955 39.130 4.94 0.00 37.55 2.57
395 397 5.443283 AGAATCCAGCAGCATTCTATTGAA 58.557 37.500 4.94 0.00 37.55 2.69
396 398 5.531659 AGAATCCAGCAGCATTCTATTGAAG 59.468 40.000 4.94 0.00 37.55 3.02
399 401 4.397103 TCCAGCAGCATTCTATTGAAGTTG 59.603 41.667 0.00 0.00 35.44 3.16
400 402 4.397103 CCAGCAGCATTCTATTGAAGTTGA 59.603 41.667 0.00 0.00 35.44 3.18
401 403 5.448768 CCAGCAGCATTCTATTGAAGTTGAG 60.449 44.000 0.00 0.00 35.44 3.02
402 404 5.353400 CAGCAGCATTCTATTGAAGTTGAGA 59.647 40.000 0.00 0.00 35.44 3.27
403 405 5.585445 AGCAGCATTCTATTGAAGTTGAGAG 59.415 40.000 0.00 0.00 35.44 3.20
404 406 5.583854 GCAGCATTCTATTGAAGTTGAGAGA 59.416 40.000 0.00 0.00 35.44 3.10
406 408 7.201714 GCAGCATTCTATTGAAGTTGAGAGAAT 60.202 37.037 0.00 0.00 35.44 2.40
407 409 9.322773 CAGCATTCTATTGAAGTTGAGAGAATA 57.677 33.333 5.75 0.00 33.10 1.75
408 410 9.896645 AGCATTCTATTGAAGTTGAGAGAATAA 57.103 29.630 5.75 0.00 33.10 1.40
413 415 6.998968 ATTGAAGTTGAGAGAATAAGCTGG 57.001 37.500 0.00 0.00 0.00 4.85
414 416 5.745312 TGAAGTTGAGAGAATAAGCTGGA 57.255 39.130 0.00 0.00 0.00 3.86
415 417 5.728471 TGAAGTTGAGAGAATAAGCTGGAG 58.272 41.667 0.00 0.00 0.00 3.86
416 418 5.247110 TGAAGTTGAGAGAATAAGCTGGAGT 59.753 40.000 0.00 0.00 0.00 3.85
417 419 6.437477 TGAAGTTGAGAGAATAAGCTGGAGTA 59.563 38.462 0.00 0.00 0.00 2.59
420 422 7.856415 AGTTGAGAGAATAAGCTGGAGTAAAT 58.144 34.615 0.00 0.00 0.00 1.40
421 423 8.982723 AGTTGAGAGAATAAGCTGGAGTAAATA 58.017 33.333 0.00 0.00 0.00 1.40
422 424 9.601217 GTTGAGAGAATAAGCTGGAGTAAATAA 57.399 33.333 0.00 0.00 0.00 1.40
435 437 9.569167 GCTGGAGTAAATAATTTTGACTTTACC 57.431 33.333 0.00 0.00 35.61 2.85
449 451 8.980143 TTTGACTTTACCTTTCTTTGACTTTG 57.020 30.769 0.00 0.00 0.00 2.77
451 453 8.343168 TGACTTTACCTTTCTTTGACTTTGAA 57.657 30.769 0.00 0.00 0.00 2.69
452 454 8.798402 TGACTTTACCTTTCTTTGACTTTGAAA 58.202 29.630 0.00 0.00 0.00 2.69
454 456 9.803315 ACTTTACCTTTCTTTGACTTTGAAATC 57.197 29.630 0.00 0.00 0.00 2.17
455 457 8.850454 TTTACCTTTCTTTGACTTTGAAATCG 57.150 30.769 0.00 0.00 0.00 3.34
457 459 4.681483 CCTTTCTTTGACTTTGAAATCGCC 59.319 41.667 0.00 0.00 0.00 5.54
458 460 5.507985 CCTTTCTTTGACTTTGAAATCGCCT 60.508 40.000 0.00 0.00 0.00 5.52
459 461 4.749245 TCTTTGACTTTGAAATCGCCTC 57.251 40.909 0.00 0.00 0.00 4.70
460 462 3.502211 TCTTTGACTTTGAAATCGCCTCC 59.498 43.478 0.00 0.00 0.00 4.30
461 463 1.438651 TGACTTTGAAATCGCCTCCG 58.561 50.000 0.00 0.00 0.00 4.63
462 464 0.727398 GACTTTGAAATCGCCTCCGG 59.273 55.000 0.00 0.00 34.56 5.14
463 465 1.305930 ACTTTGAAATCGCCTCCGGC 61.306 55.000 0.00 0.00 46.75 6.13
472 474 3.231298 GCCTCCGGCCACTCTTAT 58.769 61.111 2.24 0.00 44.06 1.73
473 475 1.527370 GCCTCCGGCCACTCTTATT 59.473 57.895 2.24 0.00 44.06 1.40
477 479 1.417890 CTCCGGCCACTCTTATTCCAT 59.582 52.381 2.24 0.00 0.00 3.41
478 480 1.140852 TCCGGCCACTCTTATTCCATG 59.859 52.381 2.24 0.00 0.00 3.66
479 481 1.134098 CCGGCCACTCTTATTCCATGT 60.134 52.381 2.24 0.00 0.00 3.21
480 482 2.213499 CGGCCACTCTTATTCCATGTC 58.787 52.381 2.24 0.00 0.00 3.06
483 485 3.620488 GCCACTCTTATTCCATGTCCAA 58.380 45.455 0.00 0.00 0.00 3.53
484 486 4.016444 GCCACTCTTATTCCATGTCCAAA 58.984 43.478 0.00 0.00 0.00 3.28
485 487 4.096984 GCCACTCTTATTCCATGTCCAAAG 59.903 45.833 0.00 0.00 0.00 2.77
486 488 4.641989 CCACTCTTATTCCATGTCCAAAGG 59.358 45.833 0.00 0.00 0.00 3.11
487 489 4.641989 CACTCTTATTCCATGTCCAAAGGG 59.358 45.833 0.00 0.00 0.00 3.95
489 491 5.222337 ACTCTTATTCCATGTCCAAAGGGTT 60.222 40.000 0.00 0.00 34.93 4.11
490 492 5.261216 TCTTATTCCATGTCCAAAGGGTTC 58.739 41.667 0.00 0.00 34.93 3.62
491 493 3.833559 ATTCCATGTCCAAAGGGTTCT 57.166 42.857 0.00 0.00 34.93 3.01
492 494 3.611025 TTCCATGTCCAAAGGGTTCTT 57.389 42.857 0.00 0.00 34.93 2.52
493 495 3.154827 TCCATGTCCAAAGGGTTCTTC 57.845 47.619 0.00 0.00 34.93 2.87
495 497 2.821969 CCATGTCCAAAGGGTTCTTCAG 59.178 50.000 0.00 0.00 34.93 3.02
496 498 3.490348 CATGTCCAAAGGGTTCTTCAGT 58.510 45.455 0.00 0.00 34.93 3.41
497 499 3.662759 TGTCCAAAGGGTTCTTCAGTT 57.337 42.857 0.00 0.00 34.93 3.16
498 500 3.551846 TGTCCAAAGGGTTCTTCAGTTC 58.448 45.455 0.00 0.00 34.93 3.01
503 505 4.517075 CCAAAGGGTTCTTCAGTTCTTCTC 59.483 45.833 0.00 0.00 31.82 2.87
505 507 2.640332 AGGGTTCTTCAGTTCTTCTCCC 59.360 50.000 0.00 0.00 0.00 4.30
506 508 2.640332 GGGTTCTTCAGTTCTTCTCCCT 59.360 50.000 0.00 0.00 0.00 4.20
511 513 1.840737 TCAGTTCTTCTCCCTCCTCG 58.159 55.000 0.00 0.00 0.00 4.63
512 514 1.354705 TCAGTTCTTCTCCCTCCTCGA 59.645 52.381 0.00 0.00 0.00 4.04
513 515 1.748493 CAGTTCTTCTCCCTCCTCGAG 59.252 57.143 5.13 5.13 0.00 4.04
522 524 2.291856 CCTCCTCGAGGCCTTCTTT 58.708 57.895 27.39 0.00 43.29 2.52
523 525 0.176910 CCTCCTCGAGGCCTTCTTTC 59.823 60.000 27.39 0.00 43.29 2.62
525 527 1.136110 CTCCTCGAGGCCTTCTTTCTC 59.864 57.143 27.39 0.00 34.44 2.87
528 530 1.552792 CTCGAGGCCTTCTTTCTCCTT 59.447 52.381 6.77 0.00 0.00 3.36
531 533 2.761208 CGAGGCCTTCTTTCTCCTTCTA 59.239 50.000 6.77 0.00 0.00 2.10
532 534 3.195825 CGAGGCCTTCTTTCTCCTTCTAA 59.804 47.826 6.77 0.00 0.00 2.10
533 535 4.322801 CGAGGCCTTCTTTCTCCTTCTAAA 60.323 45.833 6.77 0.00 0.00 1.85
534 536 5.172687 AGGCCTTCTTTCTCCTTCTAAAG 57.827 43.478 0.00 0.00 34.65 1.85
535 537 4.599676 AGGCCTTCTTTCTCCTTCTAAAGT 59.400 41.667 0.00 0.00 34.88 2.66
536 538 4.938832 GGCCTTCTTTCTCCTTCTAAAGTC 59.061 45.833 0.00 0.00 34.88 3.01
537 539 4.938832 GCCTTCTTTCTCCTTCTAAAGTCC 59.061 45.833 0.00 0.00 34.88 3.85
538 540 5.513267 GCCTTCTTTCTCCTTCTAAAGTCCA 60.513 44.000 0.00 0.00 34.88 4.02
541 543 5.155905 TCTTTCTCCTTCTAAAGTCCACCT 58.844 41.667 0.00 0.00 34.88 4.00
542 544 5.607171 TCTTTCTCCTTCTAAAGTCCACCTT 59.393 40.000 0.00 0.00 34.88 3.50
544 546 4.489737 TCTCCTTCTAAAGTCCACCTTCA 58.510 43.478 0.00 0.00 31.27 3.02
545 547 4.283722 TCTCCTTCTAAAGTCCACCTTCAC 59.716 45.833 0.00 0.00 31.27 3.18
547 549 3.559384 CCTTCTAAAGTCCACCTTCACCC 60.559 52.174 0.00 0.00 31.27 4.61
548 550 2.696775 TCTAAAGTCCACCTTCACCCA 58.303 47.619 0.00 0.00 31.27 4.51
549 551 3.256704 TCTAAAGTCCACCTTCACCCAT 58.743 45.455 0.00 0.00 31.27 4.00
550 552 3.655777 TCTAAAGTCCACCTTCACCCATT 59.344 43.478 0.00 0.00 31.27 3.16
551 553 3.328535 AAAGTCCACCTTCACCCATTT 57.671 42.857 0.00 0.00 31.27 2.32
552 554 2.292828 AGTCCACCTTCACCCATTTG 57.707 50.000 0.00 0.00 0.00 2.32
553 555 1.203050 AGTCCACCTTCACCCATTTGG 60.203 52.381 0.00 0.00 41.37 3.28
566 568 4.419522 CCCATTTGGTCGTTTTAGTGAG 57.580 45.455 0.00 0.00 0.00 3.51
567 569 4.069304 CCCATTTGGTCGTTTTAGTGAGA 58.931 43.478 0.00 0.00 0.00 3.27
568 570 4.700213 CCCATTTGGTCGTTTTAGTGAGAT 59.300 41.667 0.00 0.00 0.00 2.75
569 571 5.183140 CCCATTTGGTCGTTTTAGTGAGATT 59.817 40.000 0.00 0.00 0.00 2.40
570 572 6.294508 CCCATTTGGTCGTTTTAGTGAGATTT 60.295 38.462 0.00 0.00 0.00 2.17
572 574 7.114811 CCATTTGGTCGTTTTAGTGAGATTTTG 59.885 37.037 0.00 0.00 0.00 2.44
573 575 5.682943 TGGTCGTTTTAGTGAGATTTTGG 57.317 39.130 0.00 0.00 0.00 3.28
575 577 5.591067 TGGTCGTTTTAGTGAGATTTTGGTT 59.409 36.000 0.00 0.00 0.00 3.67
577 579 6.238538 GGTCGTTTTAGTGAGATTTTGGTTGA 60.239 38.462 0.00 0.00 0.00 3.18
580 582 7.012894 TCGTTTTAGTGAGATTTTGGTTGATGT 59.987 33.333 0.00 0.00 0.00 3.06
581 583 7.323656 CGTTTTAGTGAGATTTTGGTTGATGTC 59.676 37.037 0.00 0.00 0.00 3.06
582 584 7.815840 TTTAGTGAGATTTTGGTTGATGTCA 57.184 32.000 0.00 0.00 0.00 3.58
583 585 7.815840 TTAGTGAGATTTTGGTTGATGTCAA 57.184 32.000 0.00 0.00 28.88 3.18
584 586 6.713762 AGTGAGATTTTGGTTGATGTCAAA 57.286 33.333 0.00 0.00 37.63 2.69
585 587 7.294017 AGTGAGATTTTGGTTGATGTCAAAT 57.706 32.000 0.00 0.00 37.63 2.32
615 617 6.723298 AACTCAAAAGAAGAGAGTCAGAGA 57.277 37.500 0.00 0.00 41.45 3.10
616 618 6.916360 ACTCAAAAGAAGAGAGTCAGAGAT 57.084 37.500 0.00 0.00 38.13 2.75
619 621 6.923012 TCAAAAGAAGAGAGTCAGAGATGAG 58.077 40.000 0.00 0.00 0.00 2.90
620 622 4.989279 AAGAAGAGAGTCAGAGATGAGC 57.011 45.455 0.00 0.00 0.00 4.26
621 623 4.240881 AGAAGAGAGTCAGAGATGAGCT 57.759 45.455 0.00 0.00 0.00 4.09
622 624 4.603131 AGAAGAGAGTCAGAGATGAGCTT 58.397 43.478 0.00 0.00 0.00 3.74
624 626 3.290710 AGAGAGTCAGAGATGAGCTTCC 58.709 50.000 0.00 0.00 0.00 3.46
625 627 3.023119 GAGAGTCAGAGATGAGCTTCCA 58.977 50.000 0.00 0.00 0.00 3.53
627 629 1.476085 AGTCAGAGATGAGCTTCCACG 59.524 52.381 0.00 0.00 0.00 4.94
628 630 0.174389 TCAGAGATGAGCTTCCACGC 59.826 55.000 0.00 0.00 0.00 5.34
629 631 0.108472 CAGAGATGAGCTTCCACGCA 60.108 55.000 0.00 0.00 0.00 5.24
630 632 0.610174 AGAGATGAGCTTCCACGCAA 59.390 50.000 0.00 0.00 0.00 4.85
632 634 0.392193 AGATGAGCTTCCACGCAAGG 60.392 55.000 0.00 0.00 46.39 3.61
633 635 1.372087 GATGAGCTTCCACGCAAGGG 61.372 60.000 0.00 0.00 46.39 3.95
634 636 3.435186 GAGCTTCCACGCAAGGGC 61.435 66.667 0.00 0.00 41.83 5.19
635 637 3.909086 GAGCTTCCACGCAAGGGCT 62.909 63.158 0.00 0.00 41.83 5.19
636 638 3.435186 GCTTCCACGCAAGGGCTC 61.435 66.667 0.00 0.00 41.83 4.70
637 639 2.032528 CTTCCACGCAAGGGCTCA 59.967 61.111 0.00 0.00 41.83 4.26
638 640 2.281484 TTCCACGCAAGGGCTCAC 60.281 61.111 0.00 0.00 41.83 3.51
807 836 4.077300 TCTTCAAAGTCTGCTGTCATGT 57.923 40.909 0.00 0.00 0.00 3.21
888 1292 8.600449 TCAGAAACTGTCAAACAACAAATTTT 57.400 26.923 0.00 0.00 32.61 1.82
890 1294 9.739786 CAGAAACTGTCAAACAACAAATTTTAC 57.260 29.630 0.00 0.00 0.00 2.01
1204 1615 4.407296 ACCAAGATAGGAAGGTCACTGATC 59.593 45.833 0.00 0.00 0.00 2.92
1270 1681 1.671379 GGCAACCTCACCGGACTTC 60.671 63.158 9.46 0.00 36.31 3.01
1303 1714 1.076559 TCCCGGAACTCGCTATCCA 60.077 57.895 0.73 0.00 35.34 3.41
1544 1955 4.901197 TTACTGGTCAGATGCCAACTAA 57.099 40.909 4.84 0.00 35.32 2.24
1820 2232 1.372087 GGGAATGAGCTCAACGGCAG 61.372 60.000 22.50 0.00 34.17 4.85
2004 2416 4.245660 TCGCAAGTCTGTCCAATCTAAAG 58.754 43.478 0.00 0.00 39.48 1.85
2086 2498 0.319900 CAAGCTGACTGCACTACGGT 60.320 55.000 7.11 0.00 45.94 4.83
2252 2664 5.076873 CCTTTATCTTGGGTTCAACTTCCA 58.923 41.667 0.00 0.00 0.00 3.53
2287 2699 3.495629 GCCAGAGGATGTCAGCATTGATA 60.496 47.826 0.00 0.00 35.39 2.15
2386 2798 6.877322 GCTACCGAATTTAGGGATGCTATTTA 59.123 38.462 0.45 0.00 0.00 1.40
2501 2913 3.056107 GGGGAAATTCCAAGTGCCTTAAC 60.056 47.826 14.68 0.00 38.64 2.01
2526 2938 5.045012 AGATGCCAATGCTAGAATCAGAA 57.955 39.130 0.00 0.00 38.71 3.02
3045 3457 1.305201 TGACTGCCTTCGGTGTTTTC 58.695 50.000 0.00 0.00 30.45 2.29
3046 3458 1.134220 TGACTGCCTTCGGTGTTTTCT 60.134 47.619 0.00 0.00 30.45 2.52
3049 3461 2.099098 ACTGCCTTCGGTGTTTTCTTTG 59.901 45.455 0.00 0.00 0.00 2.77
3050 3462 2.096248 TGCCTTCGGTGTTTTCTTTGT 58.904 42.857 0.00 0.00 0.00 2.83
3051 3463 3.280295 TGCCTTCGGTGTTTTCTTTGTA 58.720 40.909 0.00 0.00 0.00 2.41
3052 3464 3.314080 TGCCTTCGGTGTTTTCTTTGTAG 59.686 43.478 0.00 0.00 0.00 2.74
3053 3465 3.314357 GCCTTCGGTGTTTTCTTTGTAGT 59.686 43.478 0.00 0.00 0.00 2.73
3054 3466 4.788521 GCCTTCGGTGTTTTCTTTGTAGTG 60.789 45.833 0.00 0.00 0.00 2.74
3055 3467 4.261031 CCTTCGGTGTTTTCTTTGTAGTGG 60.261 45.833 0.00 0.00 0.00 4.00
3057 3469 3.118334 TCGGTGTTTTCTTTGTAGTGGGA 60.118 43.478 0.00 0.00 0.00 4.37
3059 3471 4.204799 GGTGTTTTCTTTGTAGTGGGAGT 58.795 43.478 0.00 0.00 0.00 3.85
3060 3472 4.275196 GGTGTTTTCTTTGTAGTGGGAGTC 59.725 45.833 0.00 0.00 0.00 3.36
3062 3474 4.165372 TGTTTTCTTTGTAGTGGGAGTCCT 59.835 41.667 9.58 0.00 0.00 3.85
3063 3475 5.367352 TGTTTTCTTTGTAGTGGGAGTCCTA 59.633 40.000 9.58 0.00 0.00 2.94
3064 3476 6.043938 TGTTTTCTTTGTAGTGGGAGTCCTAT 59.956 38.462 9.58 0.00 0.00 2.57
3065 3477 7.236019 TGTTTTCTTTGTAGTGGGAGTCCTATA 59.764 37.037 9.58 0.00 0.00 1.31
3066 3478 7.989947 TTTCTTTGTAGTGGGAGTCCTATAT 57.010 36.000 9.58 0.00 0.00 0.86
3067 3479 6.978674 TCTTTGTAGTGGGAGTCCTATATG 57.021 41.667 9.58 0.00 0.00 1.78
3068 3480 6.679542 TCTTTGTAGTGGGAGTCCTATATGA 58.320 40.000 9.58 0.00 0.00 2.15
3069 3481 7.306013 TCTTTGTAGTGGGAGTCCTATATGAT 58.694 38.462 9.58 0.00 0.00 2.45
3071 3483 6.214177 TGTAGTGGGAGTCCTATATGATCA 57.786 41.667 9.58 0.00 0.00 2.92
3072 3484 6.249192 TGTAGTGGGAGTCCTATATGATCAG 58.751 44.000 9.58 0.00 0.00 2.90
3073 3485 5.607168 AGTGGGAGTCCTATATGATCAGA 57.393 43.478 9.58 0.00 0.00 3.27
3077 3489 6.268847 GTGGGAGTCCTATATGATCAGAAAGT 59.731 42.308 9.58 0.00 0.00 2.66
3078 3490 6.495181 TGGGAGTCCTATATGATCAGAAAGTC 59.505 42.308 9.58 0.00 0.00 3.01
3081 3493 9.303116 GGAGTCCTATATGATCAGAAAGTCTTA 57.697 37.037 0.41 0.00 0.00 2.10
3083 3495 8.802267 AGTCCTATATGATCAGAAAGTCTTAGC 58.198 37.037 0.09 0.00 0.00 3.09
3084 3496 8.802267 GTCCTATATGATCAGAAAGTCTTAGCT 58.198 37.037 0.09 0.00 0.00 3.32
3107 3519 5.806654 AGACATTTTGGCTAAAACCATGT 57.193 34.783 10.40 10.98 40.13 3.21
3108 3520 6.909550 AGACATTTTGGCTAAAACCATGTA 57.090 33.333 10.40 0.00 40.13 2.29
3110 3522 7.151976 AGACATTTTGGCTAAAACCATGTAAC 58.848 34.615 10.40 1.52 40.13 2.50
3112 3524 4.506886 TTTGGCTAAAACCATGTAACCG 57.493 40.909 0.00 0.00 40.13 4.44
3113 3525 3.143211 TGGCTAAAACCATGTAACCGT 57.857 42.857 0.00 0.00 33.75 4.83
3115 3527 4.649692 TGGCTAAAACCATGTAACCGTTA 58.350 39.130 0.00 0.00 33.75 3.18
3116 3528 5.254901 TGGCTAAAACCATGTAACCGTTAT 58.745 37.500 0.00 0.00 33.75 1.89
3117 3529 5.354792 TGGCTAAAACCATGTAACCGTTATC 59.645 40.000 0.00 0.00 33.75 1.75
3118 3530 5.354792 GGCTAAAACCATGTAACCGTTATCA 59.645 40.000 0.00 0.00 0.00 2.15
3119 3531 6.253013 GCTAAAACCATGTAACCGTTATCAC 58.747 40.000 0.00 0.00 0.00 3.06
3122 3534 1.595794 CCATGTAACCGTTATCACCGC 59.404 52.381 0.00 0.00 0.00 5.68
3125 3537 3.042871 TGTAACCGTTATCACCGCTTT 57.957 42.857 0.00 0.00 0.00 3.51
3126 3538 2.995258 TGTAACCGTTATCACCGCTTTC 59.005 45.455 0.00 0.00 0.00 2.62
3127 3539 2.172851 AACCGTTATCACCGCTTTCA 57.827 45.000 0.00 0.00 0.00 2.69
3130 3542 3.078837 ACCGTTATCACCGCTTTCAAAT 58.921 40.909 0.00 0.00 0.00 2.32
3131 3543 3.119990 ACCGTTATCACCGCTTTCAAATG 60.120 43.478 0.00 0.00 0.00 2.32
3133 3545 3.119990 CGTTATCACCGCTTTCAAATGGT 60.120 43.478 0.00 0.00 34.29 3.55
3135 3547 5.391097 CGTTATCACCGCTTTCAAATGGTTA 60.391 40.000 0.00 0.00 30.72 2.85
3137 3549 5.659440 ATCACCGCTTTCAAATGGTTAAT 57.341 34.783 0.00 0.00 30.72 1.40
3138 3550 6.767524 ATCACCGCTTTCAAATGGTTAATA 57.232 33.333 0.00 0.00 30.72 0.98
3139 3551 6.767524 TCACCGCTTTCAAATGGTTAATAT 57.232 33.333 0.00 0.00 30.72 1.28
3142 3554 7.543868 TCACCGCTTTCAAATGGTTAATATTTG 59.456 33.333 16.16 16.16 43.48 2.32
3143 3555 7.330700 CACCGCTTTCAAATGGTTAATATTTGT 59.669 33.333 19.20 4.78 42.94 2.83
3144 3556 8.524487 ACCGCTTTCAAATGGTTAATATTTGTA 58.476 29.630 19.20 12.24 42.94 2.41
3182 3594 8.169977 AGAAAATAAGAACATTTGACTCAGCA 57.830 30.769 0.00 0.00 0.00 4.41
3183 3595 8.295288 AGAAAATAAGAACATTTGACTCAGCAG 58.705 33.333 0.00 0.00 0.00 4.24
3193 3605 1.155042 GACTCAGCAGTCCAGCAAAG 58.845 55.000 0.00 0.00 43.14 2.77
3194 3606 0.761187 ACTCAGCAGTCCAGCAAAGA 59.239 50.000 0.00 0.00 36.85 2.52
3196 3608 0.761187 TCAGCAGTCCAGCAAAGAGT 59.239 50.000 0.00 0.00 36.85 3.24
3198 3610 2.568956 TCAGCAGTCCAGCAAAGAGTAT 59.431 45.455 0.00 0.00 36.85 2.12
3199 3611 2.935201 CAGCAGTCCAGCAAAGAGTATC 59.065 50.000 0.00 0.00 36.85 2.24
3200 3612 2.836981 AGCAGTCCAGCAAAGAGTATCT 59.163 45.455 0.00 0.00 42.80 1.98
3201 3613 4.026744 AGCAGTCCAGCAAAGAGTATCTA 58.973 43.478 0.00 0.00 40.69 1.98
3202 3614 4.142049 AGCAGTCCAGCAAAGAGTATCTAC 60.142 45.833 0.00 0.00 40.69 2.59
3203 3615 6.565249 AGCAGTCCAGCAAAGAGTATCTACA 61.565 44.000 0.00 0.00 40.69 2.74
3204 3616 8.297290 AGCAGTCCAGCAAAGAGTATCTACAG 62.297 46.154 0.00 0.00 40.69 2.74
3214 3626 4.737855 GAGTATCTACAGGGAAAGCACA 57.262 45.455 0.00 0.00 0.00 4.57
3215 3627 4.434520 GAGTATCTACAGGGAAAGCACAC 58.565 47.826 0.00 0.00 0.00 3.82
3216 3628 3.838317 AGTATCTACAGGGAAAGCACACA 59.162 43.478 0.00 0.00 0.00 3.72
3218 3630 3.126001 TCTACAGGGAAAGCACACAAG 57.874 47.619 0.00 0.00 0.00 3.16
3219 3631 2.703536 TCTACAGGGAAAGCACACAAGA 59.296 45.455 0.00 0.00 0.00 3.02
3220 3632 1.972872 ACAGGGAAAGCACACAAGAG 58.027 50.000 0.00 0.00 0.00 2.85
3222 3634 0.538287 AGGGAAAGCACACAAGAGGC 60.538 55.000 0.00 0.00 0.00 4.70
3223 3635 1.576421 GGAAAGCACACAAGAGGCG 59.424 57.895 0.00 0.00 0.00 5.52
3224 3636 1.081840 GAAAGCACACAAGAGGCGC 60.082 57.895 0.00 0.00 0.00 6.53
3225 3637 1.510480 GAAAGCACACAAGAGGCGCT 61.510 55.000 7.64 0.00 33.45 5.92
3226 3638 1.510480 AAAGCACACAAGAGGCGCTC 61.510 55.000 7.64 2.67 31.17 5.03
3228 3640 2.031012 CACACAAGAGGCGCTCCA 59.969 61.111 7.64 0.00 33.74 3.86
3230 3642 0.957395 CACACAAGAGGCGCTCCAAT 60.957 55.000 7.64 0.00 33.74 3.16
3231 3643 0.957395 ACACAAGAGGCGCTCCAATG 60.957 55.000 7.64 3.19 33.74 2.82
3232 3644 0.674581 CACAAGAGGCGCTCCAATGA 60.675 55.000 7.64 0.00 33.74 2.57
3233 3645 0.254178 ACAAGAGGCGCTCCAATGAT 59.746 50.000 7.64 0.00 33.74 2.45
3234 3646 1.486310 ACAAGAGGCGCTCCAATGATA 59.514 47.619 7.64 0.00 33.74 2.15
3235 3647 2.105477 ACAAGAGGCGCTCCAATGATAT 59.895 45.455 7.64 0.00 33.74 1.63
3236 3648 2.740981 CAAGAGGCGCTCCAATGATATC 59.259 50.000 7.64 0.00 33.74 1.63
3237 3649 2.255406 AGAGGCGCTCCAATGATATCT 58.745 47.619 7.64 0.00 33.74 1.98
3239 3651 3.834813 AGAGGCGCTCCAATGATATCTTA 59.165 43.478 7.64 0.00 33.74 2.10
3240 3652 4.469227 AGAGGCGCTCCAATGATATCTTAT 59.531 41.667 7.64 0.00 33.74 1.73
3241 3653 4.764172 AGGCGCTCCAATGATATCTTATC 58.236 43.478 7.64 0.00 33.74 1.75
3242 3654 4.223700 AGGCGCTCCAATGATATCTTATCA 59.776 41.667 7.64 0.05 33.74 2.15
3243 3655 4.331168 GGCGCTCCAATGATATCTTATCAC 59.669 45.833 7.64 0.00 0.00 3.06
3244 3656 4.931601 GCGCTCCAATGATATCTTATCACA 59.068 41.667 0.00 0.00 0.00 3.58
3265 3677 5.254669 CAAAAATGTCATTTTGCGTCTCC 57.745 39.130 21.36 0.00 41.70 3.71
3266 3678 4.853924 AAAATGTCATTTTGCGTCTCCT 57.146 36.364 20.27 0.00 40.69 3.69
3267 3679 4.853924 AAATGTCATTTTGCGTCTCCTT 57.146 36.364 4.91 0.00 0.00 3.36
3269 3681 3.624326 TGTCATTTTGCGTCTCCTTTG 57.376 42.857 0.00 0.00 0.00 2.77
3271 3683 4.130857 TGTCATTTTGCGTCTCCTTTGTA 58.869 39.130 0.00 0.00 0.00 2.41
3272 3684 4.213270 TGTCATTTTGCGTCTCCTTTGTAG 59.787 41.667 0.00 0.00 0.00 2.74
3273 3685 3.188460 TCATTTTGCGTCTCCTTTGTAGC 59.812 43.478 0.00 0.00 0.00 3.58
3274 3686 1.519408 TTTGCGTCTCCTTTGTAGCC 58.481 50.000 0.00 0.00 0.00 3.93
3275 3687 0.685097 TTGCGTCTCCTTTGTAGCCT 59.315 50.000 0.00 0.00 0.00 4.58
3279 3691 1.135333 CGTCTCCTTTGTAGCCTCTCC 59.865 57.143 0.00 0.00 0.00 3.71
3280 3692 2.462723 GTCTCCTTTGTAGCCTCTCCT 58.537 52.381 0.00 0.00 0.00 3.69
3281 3693 2.167487 GTCTCCTTTGTAGCCTCTCCTG 59.833 54.545 0.00 0.00 0.00 3.86
3282 3694 0.905357 TCCTTTGTAGCCTCTCCTGC 59.095 55.000 0.00 0.00 0.00 4.85
3283 3695 0.107459 CCTTTGTAGCCTCTCCTGCC 60.107 60.000 0.00 0.00 0.00 4.85
3284 3696 0.908198 CTTTGTAGCCTCTCCTGCCT 59.092 55.000 0.00 0.00 0.00 4.75
3285 3697 2.111384 CTTTGTAGCCTCTCCTGCCTA 58.889 52.381 0.00 0.00 0.00 3.93
3286 3698 2.247699 TTGTAGCCTCTCCTGCCTAA 57.752 50.000 0.00 0.00 0.00 2.69
3287 3699 2.247699 TGTAGCCTCTCCTGCCTAAA 57.752 50.000 0.00 0.00 0.00 1.85
3288 3700 2.111384 TGTAGCCTCTCCTGCCTAAAG 58.889 52.381 0.00 0.00 0.00 1.85
3289 3701 1.123928 TAGCCTCTCCTGCCTAAAGC 58.876 55.000 0.00 0.00 44.14 3.51
3290 3702 0.620121 AGCCTCTCCTGCCTAAAGCT 60.620 55.000 0.00 0.00 44.23 3.74
3291 3703 0.463474 GCCTCTCCTGCCTAAAGCTG 60.463 60.000 0.00 0.00 44.23 4.24
3292 3704 1.198713 CCTCTCCTGCCTAAAGCTGA 58.801 55.000 0.00 0.00 42.76 4.26
3293 3705 1.767681 CCTCTCCTGCCTAAAGCTGAT 59.232 52.381 0.00 0.00 42.76 2.90
3294 3706 2.172293 CCTCTCCTGCCTAAAGCTGATT 59.828 50.000 0.00 0.00 42.76 2.57
3295 3707 3.389329 CCTCTCCTGCCTAAAGCTGATTA 59.611 47.826 0.00 0.00 42.76 1.75
3296 3708 4.502950 CCTCTCCTGCCTAAAGCTGATTAG 60.503 50.000 0.00 0.00 42.76 1.73
3325 3737 7.846101 AAAACATTTCTTTCCATTCTCTCCT 57.154 32.000 0.00 0.00 0.00 3.69
3326 3738 8.940397 AAAACATTTCTTTCCATTCTCTCCTA 57.060 30.769 0.00 0.00 0.00 2.94
3327 3739 8.572855 AAACATTTCTTTCCATTCTCTCCTAG 57.427 34.615 0.00 0.00 0.00 3.02
3542 4006 7.550906 ACTGACTTCATTTCTTCCTACATAAGC 59.449 37.037 0.00 0.00 0.00 3.09
3633 4099 7.433680 GTGGAACCACTAATTTCAGAACAATT 58.566 34.615 15.69 0.00 43.12 2.32
3792 4266 5.138125 ACCATGGTAAAAAGAATGCACAG 57.862 39.130 18.10 0.00 0.00 3.66
3820 4294 7.912056 TTCTAGGCATGAATAATACATCAGC 57.088 36.000 0.00 0.00 0.00 4.26
3851 4332 8.723942 AAATGTCTAGCAAAGGTAGAATAGTG 57.276 34.615 7.43 0.00 42.92 2.74
3861 4342 2.633481 GGTAGAATAGTGTAGCAGGGGG 59.367 54.545 0.00 0.00 0.00 5.40
3880 4893 3.288092 GGGAGGCATAAAGGTTGTAAGG 58.712 50.000 0.00 0.00 0.00 2.69
3889 4902 9.496873 GGCATAAAGGTTGTAAGGTTTAAAATT 57.503 29.630 0.00 0.00 0.00 1.82
3918 4931 4.778213 TTGCCCTTGCTCTAAGATACAT 57.222 40.909 0.00 0.00 38.76 2.29
3933 4946 9.665719 TCTAAGATACATTTCATGCAACTTACA 57.334 29.630 0.00 0.00 0.00 2.41
4038 5064 9.827411 CATATCAACAATATCAATCAGCTTCAG 57.173 33.333 0.00 0.00 0.00 3.02
4090 5116 7.986889 ACTATCAAAGCATGTCACATATGTGTA 59.013 33.333 30.03 21.85 45.76 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 201 4.068599 TGTGAAAAATAGTGGATGCACGA 58.931 39.130 12.02 7.22 0.00 4.35
229 231 9.290988 TGAAGGCATGTTAAAATTCTTAGTGTA 57.709 29.630 0.00 0.00 0.00 2.90
231 233 9.643693 AATGAAGGCATGTTAAAATTCTTAGTG 57.356 29.630 0.00 0.00 34.26 2.74
238 240 9.154847 GAAGCTAAATGAAGGCATGTTAAAATT 57.845 29.630 0.00 0.00 34.26 1.82
240 242 7.895759 AGAAGCTAAATGAAGGCATGTTAAAA 58.104 30.769 0.00 0.00 34.26 1.52
246 248 4.036498 CCAGAGAAGCTAAATGAAGGCATG 59.964 45.833 0.00 0.00 34.26 4.06
247 249 4.205587 CCAGAGAAGCTAAATGAAGGCAT 58.794 43.478 0.00 0.00 35.92 4.40
250 252 3.376546 GCACCAGAGAAGCTAAATGAAGG 59.623 47.826 0.00 0.00 0.00 3.46
253 255 3.603532 CAGCACCAGAGAAGCTAAATGA 58.396 45.455 0.00 0.00 36.73 2.57
254 256 2.097142 GCAGCACCAGAGAAGCTAAATG 59.903 50.000 0.00 0.00 36.73 2.32
255 257 2.026449 AGCAGCACCAGAGAAGCTAAAT 60.026 45.455 0.00 0.00 36.73 1.40
257 259 0.979665 AGCAGCACCAGAGAAGCTAA 59.020 50.000 0.00 0.00 36.73 3.09
258 260 0.248565 CAGCAGCACCAGAGAAGCTA 59.751 55.000 0.00 0.00 36.73 3.32
259 261 1.003597 CAGCAGCACCAGAGAAGCT 60.004 57.895 0.00 0.00 39.63 3.74
260 262 2.688794 GCAGCAGCACCAGAGAAGC 61.689 63.158 0.00 0.00 41.58 3.86
261 263 1.003597 AGCAGCAGCACCAGAGAAG 60.004 57.895 3.17 0.00 45.49 2.85
263 265 1.886253 GAGAGCAGCAGCACCAGAGA 61.886 60.000 3.17 0.00 45.49 3.10
266 268 0.605860 AAAGAGAGCAGCAGCACCAG 60.606 55.000 3.17 0.00 45.49 4.00
267 269 0.887836 CAAAGAGAGCAGCAGCACCA 60.888 55.000 3.17 0.00 45.49 4.17
269 271 0.888285 ACCAAAGAGAGCAGCAGCAC 60.888 55.000 3.17 0.00 45.49 4.40
275 277 1.135141 CGGAGAGACCAAAGAGAGCAG 60.135 57.143 0.00 0.00 38.90 4.24
277 279 1.135228 GTCGGAGAGACCAAAGAGAGC 60.135 57.143 0.00 0.00 43.95 4.09
289 291 1.153667 GCAGGAGCTTGTCGGAGAG 60.154 63.158 0.00 0.00 35.35 3.20
291 293 1.739562 GTGCAGGAGCTTGTCGGAG 60.740 63.158 0.00 0.00 42.74 4.63
293 295 2.743928 GGTGCAGGAGCTTGTCGG 60.744 66.667 0.00 0.00 42.74 4.79
295 297 1.739562 CTCGGTGCAGGAGCTTGTC 60.740 63.158 2.04 0.00 42.74 3.18
296 298 2.345244 CTCGGTGCAGGAGCTTGT 59.655 61.111 2.04 0.00 42.74 3.16
304 306 1.140589 CTACTCCAGCTCGGTGCAG 59.859 63.158 4.74 0.00 45.94 4.41
305 307 3.288484 CTACTCCAGCTCGGTGCA 58.712 61.111 4.74 0.00 45.94 4.57
317 319 0.750249 GCTGGAGAAGGGAGCTACTC 59.250 60.000 0.00 0.00 0.00 2.59
318 320 0.338120 AGCTGGAGAAGGGAGCTACT 59.662 55.000 0.00 0.00 41.33 2.57
320 322 0.397816 GGAGCTGGAGAAGGGAGCTA 60.398 60.000 0.00 0.00 43.18 3.32
325 327 3.087666 GCGAGGAGCTGGAGAAGGG 62.088 68.421 0.00 0.00 44.04 3.95
326 328 2.498726 GCGAGGAGCTGGAGAAGG 59.501 66.667 0.00 0.00 44.04 3.46
345 347 3.934962 GCCATCCCGAGAGAGCCC 61.935 72.222 0.00 0.00 0.00 5.19
347 349 4.292178 CCGCCATCCCGAGAGAGC 62.292 72.222 0.00 0.00 0.00 4.09
348 350 4.292178 GCCGCCATCCCGAGAGAG 62.292 72.222 0.00 0.00 0.00 3.20
358 360 2.650813 GATTCTCGTGAGGCCGCCAT 62.651 60.000 13.15 0.00 0.00 4.40
359 361 3.371097 GATTCTCGTGAGGCCGCCA 62.371 63.158 13.15 0.00 0.00 5.69
360 362 2.586357 GATTCTCGTGAGGCCGCC 60.586 66.667 3.22 0.00 0.00 6.13
361 363 2.586357 GGATTCTCGTGAGGCCGC 60.586 66.667 0.00 0.00 0.00 6.53
362 364 1.227089 CTGGATTCTCGTGAGGCCG 60.227 63.158 0.00 0.00 0.00 6.13
363 365 1.522580 GCTGGATTCTCGTGAGGCC 60.523 63.158 0.00 0.00 0.00 5.19
364 366 0.809241 CTGCTGGATTCTCGTGAGGC 60.809 60.000 0.00 0.00 0.00 4.70
366 368 0.108472 TGCTGCTGGATTCTCGTGAG 60.108 55.000 0.00 0.00 0.00 3.51
367 369 0.538584 ATGCTGCTGGATTCTCGTGA 59.461 50.000 0.00 0.00 0.00 4.35
368 370 1.329906 GAATGCTGCTGGATTCTCGTG 59.670 52.381 24.25 0.00 44.33 4.35
373 375 5.298777 ACTTCAATAGAATGCTGCTGGATTC 59.701 40.000 24.16 24.16 46.88 2.52
375 377 4.789807 ACTTCAATAGAATGCTGCTGGAT 58.210 39.130 0.00 0.00 32.31 3.41
376 378 4.226427 ACTTCAATAGAATGCTGCTGGA 57.774 40.909 0.00 0.00 32.31 3.86
378 380 5.353400 TCTCAACTTCAATAGAATGCTGCTG 59.647 40.000 0.00 0.00 32.31 4.41
379 381 5.494724 TCTCAACTTCAATAGAATGCTGCT 58.505 37.500 0.00 0.00 32.31 4.24
380 382 5.583854 TCTCTCAACTTCAATAGAATGCTGC 59.416 40.000 0.00 0.00 32.31 5.25
382 384 9.896645 TTATTCTCTCAACTTCAATAGAATGCT 57.103 29.630 0.00 0.00 35.76 3.79
386 388 9.376075 CAGCTTATTCTCTCAACTTCAATAGAA 57.624 33.333 0.00 0.00 0.00 2.10
389 391 7.851228 TCCAGCTTATTCTCTCAACTTCAATA 58.149 34.615 0.00 0.00 0.00 1.90
391 393 6.114187 TCCAGCTTATTCTCTCAACTTCAA 57.886 37.500 0.00 0.00 0.00 2.69
393 395 5.729510 ACTCCAGCTTATTCTCTCAACTTC 58.270 41.667 0.00 0.00 0.00 3.01
394 396 5.753721 ACTCCAGCTTATTCTCTCAACTT 57.246 39.130 0.00 0.00 0.00 2.66
395 397 6.859112 TTACTCCAGCTTATTCTCTCAACT 57.141 37.500 0.00 0.00 0.00 3.16
396 398 9.601217 TTATTTACTCCAGCTTATTCTCTCAAC 57.399 33.333 0.00 0.00 0.00 3.18
409 411 9.569167 GGTAAAGTCAAAATTATTTACTCCAGC 57.431 33.333 6.63 0.00 37.93 4.85
423 425 9.418045 CAAAGTCAAAGAAAGGTAAAGTCAAAA 57.582 29.630 0.00 0.00 0.00 2.44
424 426 8.798402 TCAAAGTCAAAGAAAGGTAAAGTCAAA 58.202 29.630 0.00 0.00 0.00 2.69
425 427 8.343168 TCAAAGTCAAAGAAAGGTAAAGTCAA 57.657 30.769 0.00 0.00 0.00 3.18
426 428 7.931578 TCAAAGTCAAAGAAAGGTAAAGTCA 57.068 32.000 0.00 0.00 0.00 3.41
427 429 9.803315 ATTTCAAAGTCAAAGAAAGGTAAAGTC 57.197 29.630 0.00 0.00 35.05 3.01
429 431 8.958043 CGATTTCAAAGTCAAAGAAAGGTAAAG 58.042 33.333 0.00 0.00 35.05 1.85
430 432 7.434013 GCGATTTCAAAGTCAAAGAAAGGTAAA 59.566 33.333 0.00 0.00 35.05 2.01
434 436 4.681483 GGCGATTTCAAAGTCAAAGAAAGG 59.319 41.667 0.00 0.00 35.05 3.11
435 437 5.523369 AGGCGATTTCAAAGTCAAAGAAAG 58.477 37.500 0.00 0.00 35.05 2.62
438 440 3.502211 GGAGGCGATTTCAAAGTCAAAGA 59.498 43.478 0.00 0.00 0.00 2.52
439 441 3.667960 CGGAGGCGATTTCAAAGTCAAAG 60.668 47.826 0.00 0.00 0.00 2.77
440 442 2.225491 CGGAGGCGATTTCAAAGTCAAA 59.775 45.455 0.00 0.00 0.00 2.69
443 445 0.727398 CCGGAGGCGATTTCAAAGTC 59.273 55.000 0.00 0.00 46.14 3.01
457 459 0.830648 TGGAATAAGAGTGGCCGGAG 59.169 55.000 5.05 0.00 0.00 4.63
458 460 1.140852 CATGGAATAAGAGTGGCCGGA 59.859 52.381 5.05 0.00 0.00 5.14
459 461 1.134098 ACATGGAATAAGAGTGGCCGG 60.134 52.381 0.00 0.00 0.00 6.13
460 462 2.213499 GACATGGAATAAGAGTGGCCG 58.787 52.381 0.00 0.00 0.00 6.13
461 463 2.092429 TGGACATGGAATAAGAGTGGCC 60.092 50.000 0.00 0.00 38.49 5.36
462 464 3.281727 TGGACATGGAATAAGAGTGGC 57.718 47.619 0.00 0.00 0.00 5.01
463 465 4.641989 CCTTTGGACATGGAATAAGAGTGG 59.358 45.833 0.00 0.00 0.00 4.00
464 466 4.641989 CCCTTTGGACATGGAATAAGAGTG 59.358 45.833 0.00 0.00 0.00 3.51
465 467 4.292306 ACCCTTTGGACATGGAATAAGAGT 59.708 41.667 0.00 0.00 34.81 3.24
466 468 4.860022 ACCCTTTGGACATGGAATAAGAG 58.140 43.478 0.00 0.00 34.81 2.85
467 469 4.946160 ACCCTTTGGACATGGAATAAGA 57.054 40.909 0.00 0.00 34.81 2.10
470 472 4.946160 AGAACCCTTTGGACATGGAATA 57.054 40.909 0.00 0.00 34.81 1.75
471 473 3.833559 AGAACCCTTTGGACATGGAAT 57.166 42.857 0.00 0.00 34.81 3.01
472 474 3.117322 TGAAGAACCCTTTGGACATGGAA 60.117 43.478 0.00 0.00 34.81 3.53
473 475 2.445145 TGAAGAACCCTTTGGACATGGA 59.555 45.455 0.00 0.00 34.81 3.41
477 479 3.202151 AGAACTGAAGAACCCTTTGGACA 59.798 43.478 0.00 0.00 34.81 4.02
478 480 3.821748 AGAACTGAAGAACCCTTTGGAC 58.178 45.455 0.00 0.00 34.81 4.02
479 481 4.166144 AGAAGAACTGAAGAACCCTTTGGA 59.834 41.667 0.00 0.00 34.81 3.53
480 482 4.464947 AGAAGAACTGAAGAACCCTTTGG 58.535 43.478 0.00 0.00 31.62 3.28
483 485 3.073209 GGGAGAAGAACTGAAGAACCCTT 59.927 47.826 0.00 0.00 34.81 3.95
484 486 2.640332 GGGAGAAGAACTGAAGAACCCT 59.360 50.000 0.00 0.00 32.93 4.34
485 487 2.640332 AGGGAGAAGAACTGAAGAACCC 59.360 50.000 0.00 0.00 35.53 4.11
486 488 3.307129 GGAGGGAGAAGAACTGAAGAACC 60.307 52.174 0.00 0.00 0.00 3.62
487 489 3.580895 AGGAGGGAGAAGAACTGAAGAAC 59.419 47.826 0.00 0.00 0.00 3.01
489 491 3.436243 GAGGAGGGAGAAGAACTGAAGA 58.564 50.000 0.00 0.00 0.00 2.87
490 492 2.165437 CGAGGAGGGAGAAGAACTGAAG 59.835 54.545 0.00 0.00 0.00 3.02
491 493 2.171840 CGAGGAGGGAGAAGAACTGAA 58.828 52.381 0.00 0.00 0.00 3.02
492 494 1.354705 TCGAGGAGGGAGAAGAACTGA 59.645 52.381 0.00 0.00 0.00 3.41
493 495 1.748493 CTCGAGGAGGGAGAAGAACTG 59.252 57.143 3.91 0.00 33.27 3.16
495 497 1.107945 CCTCGAGGAGGGAGAAGAAC 58.892 60.000 28.21 0.00 45.43 3.01
496 498 3.598273 CCTCGAGGAGGGAGAAGAA 57.402 57.895 28.21 0.00 45.43 2.52
505 507 1.136110 GAGAAAGAAGGCCTCGAGGAG 59.864 57.143 35.69 10.21 37.39 3.69
506 508 1.187087 GAGAAAGAAGGCCTCGAGGA 58.813 55.000 35.69 0.00 37.39 3.71
511 513 4.828072 TTAGAAGGAGAAAGAAGGCCTC 57.172 45.455 5.23 0.00 0.00 4.70
512 514 4.599676 ACTTTAGAAGGAGAAAGAAGGCCT 59.400 41.667 0.00 0.00 36.39 5.19
513 515 4.912586 ACTTTAGAAGGAGAAAGAAGGCC 58.087 43.478 0.00 0.00 36.39 5.19
515 517 5.935206 GTGGACTTTAGAAGGAGAAAGAAGG 59.065 44.000 1.60 0.00 36.39 3.46
516 518 5.935206 GGTGGACTTTAGAAGGAGAAAGAAG 59.065 44.000 1.60 0.00 36.39 2.85
517 519 5.607171 AGGTGGACTTTAGAAGGAGAAAGAA 59.393 40.000 1.60 0.00 36.39 2.52
518 520 5.155905 AGGTGGACTTTAGAAGGAGAAAGA 58.844 41.667 1.60 0.00 36.39 2.52
522 524 4.283722 GTGAAGGTGGACTTTAGAAGGAGA 59.716 45.833 0.00 0.00 40.21 3.71
523 525 4.563786 GGTGAAGGTGGACTTTAGAAGGAG 60.564 50.000 0.00 0.00 40.21 3.69
525 527 3.559384 GGGTGAAGGTGGACTTTAGAAGG 60.559 52.174 0.00 0.00 40.21 3.46
528 530 2.696775 TGGGTGAAGGTGGACTTTAGA 58.303 47.619 0.00 0.00 40.21 2.10
531 533 2.965147 CAAATGGGTGAAGGTGGACTTT 59.035 45.455 0.00 0.00 40.21 2.66
532 534 2.597455 CAAATGGGTGAAGGTGGACTT 58.403 47.619 0.00 0.00 43.65 3.01
533 535 1.203050 CCAAATGGGTGAAGGTGGACT 60.203 52.381 0.00 0.00 0.00 3.85
534 536 1.256812 CCAAATGGGTGAAGGTGGAC 58.743 55.000 0.00 0.00 0.00 4.02
535 537 3.763931 CCAAATGGGTGAAGGTGGA 57.236 52.632 0.00 0.00 0.00 4.02
545 547 4.069304 TCTCACTAAAACGACCAAATGGG 58.931 43.478 4.17 0.00 44.81 4.00
547 549 7.114811 CCAAAATCTCACTAAAACGACCAAATG 59.885 37.037 0.00 0.00 0.00 2.32
548 550 7.145323 CCAAAATCTCACTAAAACGACCAAAT 58.855 34.615 0.00 0.00 0.00 2.32
549 551 6.095720 ACCAAAATCTCACTAAAACGACCAAA 59.904 34.615 0.00 0.00 0.00 3.28
550 552 5.591067 ACCAAAATCTCACTAAAACGACCAA 59.409 36.000 0.00 0.00 0.00 3.67
551 553 5.127491 ACCAAAATCTCACTAAAACGACCA 58.873 37.500 0.00 0.00 0.00 4.02
552 554 5.684550 ACCAAAATCTCACTAAAACGACC 57.315 39.130 0.00 0.00 0.00 4.79
553 555 6.721321 TCAACCAAAATCTCACTAAAACGAC 58.279 36.000 0.00 0.00 0.00 4.34
555 557 7.138736 ACATCAACCAAAATCTCACTAAAACG 58.861 34.615 0.00 0.00 0.00 3.60
558 560 7.815840 TGACATCAACCAAAATCTCACTAAA 57.184 32.000 0.00 0.00 0.00 1.85
559 561 7.815840 TTGACATCAACCAAAATCTCACTAA 57.184 32.000 0.00 0.00 0.00 2.24
561 563 6.713762 TTTGACATCAACCAAAATCTCACT 57.286 33.333 0.00 0.00 35.28 3.41
562 564 9.643693 ATTATTTGACATCAACCAAAATCTCAC 57.356 29.630 0.00 0.00 36.10 3.51
589 591 9.521841 TCTCTGACTCTCTTCTTTTGAGTTATA 57.478 33.333 0.00 0.00 40.63 0.98
592 594 6.723298 TCTCTGACTCTCTTCTTTTGAGTT 57.277 37.500 0.00 0.00 40.63 3.01
594 596 6.923012 TCATCTCTGACTCTCTTCTTTTGAG 58.077 40.000 0.00 0.00 0.00 3.02
595 597 6.572119 GCTCATCTCTGACTCTCTTCTTTTGA 60.572 42.308 0.00 0.00 0.00 2.69
596 598 5.577945 GCTCATCTCTGACTCTCTTCTTTTG 59.422 44.000 0.00 0.00 0.00 2.44
597 599 5.481473 AGCTCATCTCTGACTCTCTTCTTTT 59.519 40.000 0.00 0.00 0.00 2.27
598 600 5.018809 AGCTCATCTCTGACTCTCTTCTTT 58.981 41.667 0.00 0.00 0.00 2.52
599 601 4.603131 AGCTCATCTCTGACTCTCTTCTT 58.397 43.478 0.00 0.00 0.00 2.52
601 603 4.202050 GGAAGCTCATCTCTGACTCTCTTC 60.202 50.000 0.00 0.00 0.00 2.87
606 608 2.479389 CGTGGAAGCTCATCTCTGACTC 60.479 54.545 0.00 0.00 0.00 3.36
607 609 1.476085 CGTGGAAGCTCATCTCTGACT 59.524 52.381 0.00 0.00 0.00 3.41
608 610 1.919918 CGTGGAAGCTCATCTCTGAC 58.080 55.000 0.00 0.00 0.00 3.51
609 611 0.174389 GCGTGGAAGCTCATCTCTGA 59.826 55.000 0.00 0.00 0.00 3.27
610 612 0.108472 TGCGTGGAAGCTCATCTCTG 60.108 55.000 0.00 0.00 38.13 3.35
612 614 1.005340 CTTGCGTGGAAGCTCATCTC 58.995 55.000 0.00 0.00 38.13 2.75
613 615 0.392193 CCTTGCGTGGAAGCTCATCT 60.392 55.000 0.00 0.00 38.13 2.90
614 616 1.372087 CCCTTGCGTGGAAGCTCATC 61.372 60.000 0.00 0.00 38.13 2.92
615 617 1.377725 CCCTTGCGTGGAAGCTCAT 60.378 57.895 0.00 0.00 38.13 2.90
616 618 2.032528 CCCTTGCGTGGAAGCTCA 59.967 61.111 0.00 0.00 38.13 4.26
619 621 3.435186 GAGCCCTTGCGTGGAAGC 61.435 66.667 0.00 0.00 44.33 3.86
620 622 2.032528 TGAGCCCTTGCGTGGAAG 59.967 61.111 0.00 0.00 44.33 3.46
621 623 2.281484 GTGAGCCCTTGCGTGGAA 60.281 61.111 0.00 0.00 44.33 3.53
622 624 3.535629 CTGTGAGCCCTTGCGTGGA 62.536 63.158 0.00 0.00 44.33 4.02
624 626 2.031012 TCTGTGAGCCCTTGCGTG 59.969 61.111 0.00 0.00 44.33 5.34
625 627 2.031163 GTCTGTGAGCCCTTGCGT 59.969 61.111 0.00 0.00 44.33 5.24
627 629 0.607489 ATGTGTCTGTGAGCCCTTGC 60.607 55.000 0.00 0.00 37.95 4.01
628 630 1.162698 CATGTGTCTGTGAGCCCTTG 58.837 55.000 0.00 0.00 0.00 3.61
629 631 0.607489 GCATGTGTCTGTGAGCCCTT 60.607 55.000 0.00 0.00 0.00 3.95
630 632 1.002868 GCATGTGTCTGTGAGCCCT 60.003 57.895 0.00 0.00 0.00 5.19
631 633 2.042831 GGCATGTGTCTGTGAGCCC 61.043 63.158 0.00 0.00 36.17 5.19
632 634 2.042831 GGGCATGTGTCTGTGAGCC 61.043 63.158 0.00 0.00 41.29 4.70
633 635 2.393768 CGGGCATGTGTCTGTGAGC 61.394 63.158 0.00 0.00 0.00 4.26
634 636 1.004560 ACGGGCATGTGTCTGTGAG 60.005 57.895 0.00 0.00 37.94 3.51
635 637 1.005037 GACGGGCATGTGTCTGTGA 60.005 57.895 3.44 0.00 39.73 3.58
636 638 0.884259 TTGACGGGCATGTGTCTGTG 60.884 55.000 3.44 0.00 39.73 3.66
637 639 0.884704 GTTGACGGGCATGTGTCTGT 60.885 55.000 13.48 0.00 42.82 3.41
638 640 0.603707 AGTTGACGGGCATGTGTCTG 60.604 55.000 13.48 0.00 36.10 3.51
807 836 2.351455 TCTGTTTGTGACGCACAGAAA 58.649 42.857 12.65 7.00 45.39 2.52
888 1292 2.679450 CGAACGGAACTGTCCATTGTA 58.321 47.619 0.00 0.00 45.26 2.41
890 1294 0.165944 GCGAACGGAACTGTCCATTG 59.834 55.000 0.00 0.00 45.26 2.82
1204 1615 0.801251 CCTCGAGAAGCCAGCAAAAG 59.199 55.000 15.71 0.00 0.00 2.27
1245 1656 1.237285 CGGTGAGGTTGCCAAGGAAG 61.237 60.000 0.00 0.00 0.00 3.46
1270 1681 2.743928 GGACAGGTTGAGGCGCAG 60.744 66.667 10.83 0.00 0.00 5.18
1544 1955 2.040544 GGCGCACTAACACATGGCT 61.041 57.895 10.83 0.00 0.00 4.75
1687 2098 5.479375 ACGAGGTTACCTTGAAGAGTTCATA 59.521 40.000 24.34 0.00 39.84 2.15
1746 2158 0.182061 TGATGCCATCAAGAGCTCCC 59.818 55.000 10.93 0.00 36.11 4.30
1814 2226 1.853963 AGACTCTGGAATACTGCCGT 58.146 50.000 0.00 0.00 0.00 5.68
1820 2232 7.885922 TCAGATCACCTATAGACTCTGGAATAC 59.114 40.741 0.00 0.00 32.83 1.89
2086 2498 7.638444 TGACCATGGAAAGGATTGTAAGATAA 58.362 34.615 21.47 0.00 0.00 1.75
2287 2699 5.574970 AGAACCTGGAGATTCTTGAAACT 57.425 39.130 0.00 0.00 30.88 2.66
2386 2798 5.016173 TCCAGTTAGTTTATTGCCTTGCAT 58.984 37.500 0.00 0.00 38.76 3.96
2501 2913 2.245159 TTCTAGCATTGGCATCTCCG 57.755 50.000 0.00 0.00 44.61 4.63
2526 2938 5.242795 AGAATACCTTTGGTGCAGTACTT 57.757 39.130 0.00 0.00 36.19 2.24
2584 2996 1.090052 GCACTGGGCGTGAGGTATTC 61.090 60.000 0.00 0.00 46.81 1.75
2961 3373 3.142174 GGAAACTGAACTTGCTACTGCT 58.858 45.455 0.00 0.00 40.48 4.24
2966 3378 4.518970 GGTCAATGGAAACTGAACTTGCTA 59.481 41.667 0.00 0.00 0.00 3.49
3045 3457 6.978674 TCATATAGGACTCCCACTACAAAG 57.021 41.667 0.00 0.00 33.88 2.77
3046 3458 7.073208 TGATCATATAGGACTCCCACTACAAA 58.927 38.462 0.00 0.00 33.88 2.83
3049 3461 6.486056 TCTGATCATATAGGACTCCCACTAC 58.514 44.000 0.00 0.00 33.88 2.73
3050 3462 6.720217 TCTGATCATATAGGACTCCCACTA 57.280 41.667 0.00 0.00 33.88 2.74
3051 3463 5.607168 TCTGATCATATAGGACTCCCACT 57.393 43.478 0.00 0.00 33.88 4.00
3052 3464 6.268847 ACTTTCTGATCATATAGGACTCCCAC 59.731 42.308 0.00 0.00 33.88 4.61
3053 3465 6.385443 ACTTTCTGATCATATAGGACTCCCA 58.615 40.000 0.00 0.00 33.88 4.37
3054 3466 6.723977 AGACTTTCTGATCATATAGGACTCCC 59.276 42.308 0.00 0.00 0.00 4.30
3055 3467 7.775053 AGACTTTCTGATCATATAGGACTCC 57.225 40.000 0.00 0.00 0.00 3.85
3057 3469 8.802267 GCTAAGACTTTCTGATCATATAGGACT 58.198 37.037 0.00 0.00 0.00 3.85
3059 3471 8.948401 AGCTAAGACTTTCTGATCATATAGGA 57.052 34.615 0.00 0.00 0.00 2.94
3077 3489 7.120726 GGTTTTAGCCAAAATGTCTAGCTAAGA 59.879 37.037 0.00 0.00 44.33 2.10
3078 3490 7.094377 TGGTTTTAGCCAAAATGTCTAGCTAAG 60.094 37.037 0.00 0.00 44.33 2.18
3081 3493 5.076873 TGGTTTTAGCCAAAATGTCTAGCT 58.923 37.500 0.00 0.00 36.10 3.32
3082 3494 5.385509 TGGTTTTAGCCAAAATGTCTAGC 57.614 39.130 0.00 0.00 36.10 3.42
3083 3495 6.924111 ACATGGTTTTAGCCAAAATGTCTAG 58.076 36.000 0.00 0.00 42.48 2.43
3084 3496 6.909550 ACATGGTTTTAGCCAAAATGTCTA 57.090 33.333 0.00 0.00 42.48 2.59
3086 3498 6.367695 GGTTACATGGTTTTAGCCAAAATGTC 59.632 38.462 0.00 0.00 42.48 3.06
3087 3499 6.227522 GGTTACATGGTTTTAGCCAAAATGT 58.772 36.000 0.00 0.00 42.48 2.71
3088 3500 5.347364 CGGTTACATGGTTTTAGCCAAAATG 59.653 40.000 0.00 0.00 42.48 2.32
3089 3501 5.011227 ACGGTTACATGGTTTTAGCCAAAAT 59.989 36.000 0.00 0.00 42.48 1.82
3090 3502 4.341520 ACGGTTACATGGTTTTAGCCAAAA 59.658 37.500 0.00 0.00 42.48 2.44
3094 3506 5.354792 TGATAACGGTTACATGGTTTTAGCC 59.645 40.000 2.10 0.00 0.00 3.93
3096 3508 6.455913 CGGTGATAACGGTTACATGGTTTTAG 60.456 42.308 2.10 0.00 0.00 1.85
3097 3509 5.350914 CGGTGATAACGGTTACATGGTTTTA 59.649 40.000 2.10 0.00 0.00 1.52
3098 3510 4.154556 CGGTGATAACGGTTACATGGTTTT 59.845 41.667 2.10 0.00 0.00 2.43
3110 3522 3.425404 CATTTGAAAGCGGTGATAACGG 58.575 45.455 0.00 0.00 0.00 4.44
3112 3524 4.434713 ACCATTTGAAAGCGGTGATAAC 57.565 40.909 1.43 0.00 0.00 1.89
3113 3525 6.576662 TTAACCATTTGAAAGCGGTGATAA 57.423 33.333 2.94 0.00 0.00 1.75
3115 3527 5.659440 ATTAACCATTTGAAAGCGGTGAT 57.341 34.783 2.94 0.00 0.00 3.06
3116 3528 6.767524 ATATTAACCATTTGAAAGCGGTGA 57.232 33.333 2.94 0.00 0.00 4.02
3117 3529 7.330700 ACAAATATTAACCATTTGAAAGCGGTG 59.669 33.333 22.18 3.48 43.14 4.94
3118 3530 7.382898 ACAAATATTAACCATTTGAAAGCGGT 58.617 30.769 22.18 0.00 43.14 5.68
3119 3531 7.826260 ACAAATATTAACCATTTGAAAGCGG 57.174 32.000 22.18 0.00 43.14 5.52
3157 3569 8.169977 TGCTGAGTCAAATGTTCTTATTTTCT 57.830 30.769 0.00 0.00 0.00 2.52
3158 3570 8.078596 ACTGCTGAGTCAAATGTTCTTATTTTC 58.921 33.333 0.00 0.00 0.00 2.29
3159 3571 7.945134 ACTGCTGAGTCAAATGTTCTTATTTT 58.055 30.769 0.00 0.00 0.00 1.82
3175 3587 0.761187 TCTTTGCTGGACTGCTGAGT 59.239 50.000 0.00 0.00 33.98 3.41
3176 3588 1.270732 ACTCTTTGCTGGACTGCTGAG 60.271 52.381 0.00 9.26 34.50 3.35
3177 3589 0.761187 ACTCTTTGCTGGACTGCTGA 59.239 50.000 0.00 0.00 0.00 4.26
3178 3590 2.462456 TACTCTTTGCTGGACTGCTG 57.538 50.000 2.94 0.00 0.00 4.41
3179 3591 2.836981 AGATACTCTTTGCTGGACTGCT 59.163 45.455 2.94 0.00 0.00 4.24
3180 3592 3.258971 AGATACTCTTTGCTGGACTGC 57.741 47.619 0.00 0.00 0.00 4.40
3181 3593 5.330455 TGTAGATACTCTTTGCTGGACTG 57.670 43.478 0.00 0.00 0.00 3.51
3182 3594 4.404073 CCTGTAGATACTCTTTGCTGGACT 59.596 45.833 0.00 0.00 0.00 3.85
3183 3595 4.442192 CCCTGTAGATACTCTTTGCTGGAC 60.442 50.000 0.00 0.00 0.00 4.02
3185 3597 3.706594 TCCCTGTAGATACTCTTTGCTGG 59.293 47.826 0.00 0.00 0.00 4.85
3187 3599 5.627968 GCTTTCCCTGTAGATACTCTTTGCT 60.628 44.000 0.00 0.00 0.00 3.91
3188 3600 4.572795 GCTTTCCCTGTAGATACTCTTTGC 59.427 45.833 0.00 0.00 0.00 3.68
3189 3601 5.582665 GTGCTTTCCCTGTAGATACTCTTTG 59.417 44.000 0.00 0.00 0.00 2.77
3193 3605 4.081642 TGTGTGCTTTCCCTGTAGATACTC 60.082 45.833 0.00 0.00 0.00 2.59
3194 3606 3.838317 TGTGTGCTTTCCCTGTAGATACT 59.162 43.478 0.00 0.00 0.00 2.12
3196 3608 4.530553 TCTTGTGTGCTTTCCCTGTAGATA 59.469 41.667 0.00 0.00 0.00 1.98
3198 3610 2.703536 TCTTGTGTGCTTTCCCTGTAGA 59.296 45.455 0.00 0.00 0.00 2.59
3199 3611 3.070018 CTCTTGTGTGCTTTCCCTGTAG 58.930 50.000 0.00 0.00 0.00 2.74
3200 3612 2.224523 CCTCTTGTGTGCTTTCCCTGTA 60.225 50.000 0.00 0.00 0.00 2.74
3201 3613 1.477558 CCTCTTGTGTGCTTTCCCTGT 60.478 52.381 0.00 0.00 0.00 4.00
3202 3614 1.242076 CCTCTTGTGTGCTTTCCCTG 58.758 55.000 0.00 0.00 0.00 4.45
3203 3615 0.538287 GCCTCTTGTGTGCTTTCCCT 60.538 55.000 0.00 0.00 0.00 4.20
3204 3616 1.856265 CGCCTCTTGTGTGCTTTCCC 61.856 60.000 0.00 0.00 0.00 3.97
3207 3619 1.526917 AGCGCCTCTTGTGTGCTTT 60.527 52.632 2.29 0.00 46.80 3.51
3210 3622 3.426568 GGAGCGCCTCTTGTGTGC 61.427 66.667 2.29 0.00 39.48 4.57
3211 3623 0.957395 ATTGGAGCGCCTCTTGTGTG 60.957 55.000 8.34 0.00 34.31 3.82
3212 3624 0.957395 CATTGGAGCGCCTCTTGTGT 60.957 55.000 8.34 0.00 34.31 3.72
3213 3625 0.674581 TCATTGGAGCGCCTCTTGTG 60.675 55.000 8.34 0.00 34.31 3.33
3214 3626 0.254178 ATCATTGGAGCGCCTCTTGT 59.746 50.000 8.34 0.00 34.31 3.16
3215 3627 2.245159 TATCATTGGAGCGCCTCTTG 57.755 50.000 8.34 2.84 34.31 3.02
3216 3628 2.636893 AGATATCATTGGAGCGCCTCTT 59.363 45.455 8.34 0.00 34.31 2.85
3218 3630 2.758736 AGATATCATTGGAGCGCCTC 57.241 50.000 8.34 0.22 34.31 4.70
3219 3631 4.223700 TGATAAGATATCATTGGAGCGCCT 59.776 41.667 8.34 0.00 34.31 5.52
3220 3632 4.331168 GTGATAAGATATCATTGGAGCGCC 59.669 45.833 2.29 0.00 0.00 6.53
3222 3634 7.425577 TTTGTGATAAGATATCATTGGAGCG 57.574 36.000 5.32 0.00 0.00 5.03
3242 3654 4.744631 GGAGACGCAAAATGACATTTTTGT 59.255 37.500 20.94 20.59 44.62 2.83
3243 3655 4.984161 AGGAGACGCAAAATGACATTTTTG 59.016 37.500 20.94 18.09 45.25 2.44
3244 3656 5.200368 AGGAGACGCAAAATGACATTTTT 57.800 34.783 20.94 9.29 40.27 1.94
3249 3661 2.948979 ACAAAGGAGACGCAAAATGACA 59.051 40.909 0.00 0.00 0.00 3.58
3250 3662 3.626028 ACAAAGGAGACGCAAAATGAC 57.374 42.857 0.00 0.00 0.00 3.06
3252 3664 3.492313 GCTACAAAGGAGACGCAAAATG 58.508 45.455 0.00 0.00 0.00 2.32
3253 3665 2.488153 GGCTACAAAGGAGACGCAAAAT 59.512 45.455 0.00 0.00 0.00 1.82
3254 3666 1.877443 GGCTACAAAGGAGACGCAAAA 59.123 47.619 0.00 0.00 0.00 2.44
3255 3667 1.071699 AGGCTACAAAGGAGACGCAAA 59.928 47.619 0.00 0.00 0.00 3.68
3258 3670 0.533032 AGAGGCTACAAAGGAGACGC 59.467 55.000 0.00 0.00 0.00 5.19
3259 3671 1.135333 GGAGAGGCTACAAAGGAGACG 59.865 57.143 0.00 0.00 0.00 4.18
3260 3672 2.167487 CAGGAGAGGCTACAAAGGAGAC 59.833 54.545 0.00 0.00 0.00 3.36
3261 3673 2.461695 CAGGAGAGGCTACAAAGGAGA 58.538 52.381 0.00 0.00 0.00 3.71
3262 3674 1.134551 GCAGGAGAGGCTACAAAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
3265 3677 0.908198 AGGCAGGAGAGGCTACAAAG 59.092 55.000 0.00 0.00 43.28 2.77
3266 3678 2.247699 TAGGCAGGAGAGGCTACAAA 57.752 50.000 0.00 0.00 44.66 2.83
3267 3679 2.247699 TTAGGCAGGAGAGGCTACAA 57.752 50.000 0.00 0.00 45.03 2.41
3269 3681 1.202592 GCTTTAGGCAGGAGAGGCTAC 60.203 57.143 0.00 0.00 45.03 3.58
3272 3684 0.463474 CAGCTTTAGGCAGGAGAGGC 60.463 60.000 0.00 0.00 44.79 4.70
3273 3685 1.198713 TCAGCTTTAGGCAGGAGAGG 58.801 55.000 0.00 0.00 44.79 3.69
3274 3686 3.557228 AATCAGCTTTAGGCAGGAGAG 57.443 47.619 0.00 0.00 44.79 3.20
3275 3687 3.389329 CCTAATCAGCTTTAGGCAGGAGA 59.611 47.826 10.59 0.00 41.25 3.71
3300 3712 8.255111 AGGAGAGAATGGAAAGAAATGTTTTT 57.745 30.769 0.00 0.00 0.00 1.94
3301 3713 7.846101 AGGAGAGAATGGAAAGAAATGTTTT 57.154 32.000 0.00 0.00 0.00 2.43
3302 3714 7.121907 GCTAGGAGAGAATGGAAAGAAATGTTT 59.878 37.037 0.00 0.00 0.00 2.83
3303 3715 6.601217 GCTAGGAGAGAATGGAAAGAAATGTT 59.399 38.462 0.00 0.00 0.00 2.71
3304 3716 6.069731 AGCTAGGAGAGAATGGAAAGAAATGT 60.070 38.462 0.00 0.00 0.00 2.71
3305 3717 6.355747 AGCTAGGAGAGAATGGAAAGAAATG 58.644 40.000 0.00 0.00 0.00 2.32
3306 3718 6.573712 AGCTAGGAGAGAATGGAAAGAAAT 57.426 37.500 0.00 0.00 0.00 2.17
3307 3719 7.496346 TTAGCTAGGAGAGAATGGAAAGAAA 57.504 36.000 0.00 0.00 0.00 2.52
3308 3720 7.496346 TTTAGCTAGGAGAGAATGGAAAGAA 57.504 36.000 0.00 0.00 0.00 2.52
3309 3721 6.407525 GCTTTAGCTAGGAGAGAATGGAAAGA 60.408 42.308 9.64 0.00 38.21 2.52
3310 3722 5.757808 GCTTTAGCTAGGAGAGAATGGAAAG 59.242 44.000 9.64 2.29 38.21 2.62
3311 3723 5.675538 GCTTTAGCTAGGAGAGAATGGAAA 58.324 41.667 9.64 0.00 38.21 3.13
3312 3724 5.283457 GCTTTAGCTAGGAGAGAATGGAA 57.717 43.478 9.64 0.00 38.21 3.53
3313 3725 4.946478 GCTTTAGCTAGGAGAGAATGGA 57.054 45.455 9.64 0.00 38.21 3.41
3515 3979 9.442047 CTTATGTAGGAAGAAATGAAGTCAGTT 57.558 33.333 0.00 0.00 36.82 3.16
3516 3980 7.550906 GCTTATGTAGGAAGAAATGAAGTCAGT 59.449 37.037 0.00 0.00 0.00 3.41
3657 4125 4.142881 GCTCGTGGGAGAATCAGTAAAAAC 60.143 45.833 0.00 0.00 43.27 2.43
3820 4294 8.099364 TCTACCTTTGCTAGACATTTTTCAAG 57.901 34.615 0.00 0.00 0.00 3.02
3851 4332 0.843984 TTTATGCCTCCCCCTGCTAC 59.156 55.000 0.00 0.00 0.00 3.58
3861 4342 5.977489 AAACCTTACAACCTTTATGCCTC 57.023 39.130 0.00 0.00 0.00 4.70
4038 5064 6.463995 TGCCTGGGATATTTGTTTTGTATC 57.536 37.500 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.