Multiple sequence alignment - TraesCS6B01G154000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G154000 chr6B 100.000 4348 0 0 1 4348 157665616 157661269 0.000000e+00 8030.0
1 TraesCS6B01G154000 chr6B 83.333 174 15 7 113 275 157665271 157665101 9.740000e-32 148.0
2 TraesCS6B01G154000 chr6B 83.333 174 15 7 346 516 157665504 157665342 9.740000e-32 148.0
3 TraesCS6B01G154000 chr6B 85.507 69 10 0 2754 2822 487830725 487830657 6.030000e-09 73.1
4 TraesCS6B01G154000 chr6D 91.762 3423 135 65 392 3733 82637223 82633867 0.000000e+00 4623.0
5 TraesCS6B01G154000 chr6D 86.022 186 11 10 82 264 82637286 82637113 7.430000e-43 185.0
6 TraesCS6B01G154000 chr6D 88.525 61 7 0 2753 2813 332503487 332503547 1.680000e-09 75.0
7 TraesCS6B01G154000 chr6A 90.746 3242 128 79 607 3725 99423278 99426470 0.000000e+00 4167.0
8 TraesCS6B01G154000 chr6A 91.429 175 11 2 90 264 99422544 99422714 2.020000e-58 237.0
9 TraesCS6B01G154000 chr6A 82.162 185 14 11 389 561 99422601 99422778 1.630000e-29 141.0
10 TraesCS6B01G154000 chr6A 100.000 31 0 0 597 627 99423245 99423275 1.690000e-04 58.4
11 TraesCS6B01G154000 chr7B 88.431 631 59 5 3732 4348 5193048 5192418 0.000000e+00 749.0
12 TraesCS6B01G154000 chr7B 88.811 572 63 1 3777 4348 638055873 638055303 0.000000e+00 701.0
13 TraesCS6B01G154000 chr7B 85.374 629 79 8 3729 4348 642506704 642506080 1.320000e-179 640.0
14 TraesCS6B01G154000 chr7B 86.111 72 6 4 27 95 405065596 405065526 1.680000e-09 75.0
15 TraesCS6B01G154000 chr3A 87.560 627 67 5 3730 4348 656251209 656250586 0.000000e+00 715.0
16 TraesCS6B01G154000 chr3A 88.086 512 61 0 3837 4348 605047833 605047322 3.720000e-170 608.0
17 TraesCS6B01G154000 chr3A 100.000 31 0 0 46 76 18820049 18820019 1.690000e-04 58.4
18 TraesCS6B01G154000 chr4D 87.340 624 55 7 3743 4347 476862149 476861531 0.000000e+00 693.0
19 TraesCS6B01G154000 chr4D 92.121 165 12 1 1350 1514 433393662 433393499 9.400000e-57 231.0
20 TraesCS6B01G154000 chr4D 97.436 39 0 1 48 85 174536979 174537017 1.010000e-06 65.8
21 TraesCS6B01G154000 chr3D 86.486 629 63 7 3730 4348 298360253 298360869 0.000000e+00 671.0
22 TraesCS6B01G154000 chr3D 86.499 437 34 17 1361 1795 557925524 557925111 1.430000e-124 457.0
23 TraesCS6B01G154000 chr5B 86.006 636 69 8 3732 4348 687108722 687108088 0.000000e+00 664.0
24 TraesCS6B01G154000 chr5B 85.875 623 77 9 3730 4348 497501508 497500893 0.000000e+00 652.0
25 TraesCS6B01G154000 chr5B 95.918 49 1 1 39 86 662602774 662602726 1.300000e-10 78.7
26 TraesCS6B01G154000 chr5B 100.000 31 0 0 46 76 486482480 486482450 1.690000e-04 58.4
27 TraesCS6B01G154000 chr2B 85.822 529 50 5 3732 4235 767023245 767023773 4.950000e-149 538.0
28 TraesCS6B01G154000 chr3B 86.788 439 33 17 1360 1796 740545089 740544674 2.370000e-127 466.0
29 TraesCS6B01G154000 chr3B 90.854 164 15 0 1351 1514 222318448 222318611 2.040000e-53 220.0
30 TraesCS6B01G154000 chrUn 86.333 439 35 17 1360 1796 295855478 295855063 5.130000e-124 455.0
31 TraesCS6B01G154000 chr2D 80.451 665 73 24 3732 4348 56116379 56115724 5.130000e-124 455.0
32 TraesCS6B01G154000 chr4A 92.903 155 11 0 1360 1514 34787858 34787704 4.380000e-55 226.0
33 TraesCS6B01G154000 chr1D 97.917 48 0 1 39 85 339110936 339110983 1.000000e-11 82.4
34 TraesCS6B01G154000 chr5D 95.918 49 1 1 39 86 526842913 526842865 1.300000e-10 78.7
35 TraesCS6B01G154000 chr7A 97.561 41 0 1 46 85 464911484 464911524 7.800000e-08 69.4
36 TraesCS6B01G154000 chr2A 97.222 36 0 1 51 85 170934381 170934416 4.700000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G154000 chr6B 157661269 157665616 4347 True 2775.333333 8030 88.888667 1 4348 3 chr6B.!!$R2 4347
1 TraesCS6B01G154000 chr6D 82633867 82637286 3419 True 2404.000000 4623 88.892000 82 3733 2 chr6D.!!$R1 3651
2 TraesCS6B01G154000 chr6A 99422544 99426470 3926 False 1150.850000 4167 91.084250 90 3725 4 chr6A.!!$F1 3635
3 TraesCS6B01G154000 chr7B 5192418 5193048 630 True 749.000000 749 88.431000 3732 4348 1 chr7B.!!$R1 616
4 TraesCS6B01G154000 chr7B 638055303 638055873 570 True 701.000000 701 88.811000 3777 4348 1 chr7B.!!$R3 571
5 TraesCS6B01G154000 chr7B 642506080 642506704 624 True 640.000000 640 85.374000 3729 4348 1 chr7B.!!$R4 619
6 TraesCS6B01G154000 chr3A 656250586 656251209 623 True 715.000000 715 87.560000 3730 4348 1 chr3A.!!$R3 618
7 TraesCS6B01G154000 chr3A 605047322 605047833 511 True 608.000000 608 88.086000 3837 4348 1 chr3A.!!$R2 511
8 TraesCS6B01G154000 chr4D 476861531 476862149 618 True 693.000000 693 87.340000 3743 4347 1 chr4D.!!$R2 604
9 TraesCS6B01G154000 chr3D 298360253 298360869 616 False 671.000000 671 86.486000 3730 4348 1 chr3D.!!$F1 618
10 TraesCS6B01G154000 chr5B 687108088 687108722 634 True 664.000000 664 86.006000 3732 4348 1 chr5B.!!$R4 616
11 TraesCS6B01G154000 chr5B 497500893 497501508 615 True 652.000000 652 85.875000 3730 4348 1 chr5B.!!$R2 618
12 TraesCS6B01G154000 chr2B 767023245 767023773 528 False 538.000000 538 85.822000 3732 4235 1 chr2B.!!$F1 503
13 TraesCS6B01G154000 chr2D 56115724 56116379 655 True 455.000000 455 80.451000 3732 4348 1 chr2D.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 1288 0.032615 ATCGCTTCTCCTGTCCTCCT 60.033 55.000 0.00 0.0 0.0 3.69 F
805 1289 0.624254 TCGCTTCTCCTGTCCTCCTA 59.376 55.000 0.00 0.0 0.0 2.94 F
807 1291 0.750249 GCTTCTCCTGTCCTCCTAGC 59.250 60.000 0.00 0.0 0.0 3.42 F
946 1439 1.064208 CACGTATCCACCTCGAGACAG 59.936 57.143 15.71 0.0 0.0 3.51 F
1794 2305 1.067821 GCATCCTCTTCTCCAGGTACG 59.932 57.143 0.00 0.0 32.2 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2729 0.462581 GCTGCAGGATCGATGGTGAA 60.463 55.000 17.12 0.00 0.0 3.18 R
2194 2732 0.463295 CTTGCTGCAGGATCGATGGT 60.463 55.000 17.12 0.00 0.0 3.55 R
2235 2773 0.955919 CTTTGGACAGGGCCTCGTTC 60.956 60.000 0.95 5.18 0.0 3.95 R
2236 2774 1.073199 CTTTGGACAGGGCCTCGTT 59.927 57.895 0.95 0.00 0.0 3.85 R
3547 4161 0.383949 TTTTGTTGTCAGAAGCCGGC 59.616 50.000 21.89 21.89 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 8.807948 AAAATGATCTTATATTATGGGACGGG 57.192 34.615 0.00 0.00 0.00 5.28
79 80 5.950544 TGATCTTATATTATGGGACGGGG 57.049 43.478 0.00 0.00 0.00 5.73
80 81 4.719773 TGATCTTATATTATGGGACGGGGG 59.280 45.833 0.00 0.00 0.00 5.40
81 82 4.423167 TCTTATATTATGGGACGGGGGA 57.577 45.455 0.00 0.00 0.00 4.81
82 83 4.359105 TCTTATATTATGGGACGGGGGAG 58.641 47.826 0.00 0.00 0.00 4.30
83 84 2.735259 ATATTATGGGACGGGGGAGT 57.265 50.000 0.00 0.00 0.00 3.85
84 85 3.858696 ATATTATGGGACGGGGGAGTA 57.141 47.619 0.00 0.00 0.00 2.59
85 86 2.025636 ATTATGGGACGGGGGAGTAG 57.974 55.000 0.00 0.00 0.00 2.57
86 87 0.761702 TTATGGGACGGGGGAGTAGC 60.762 60.000 0.00 0.00 0.00 3.58
87 88 1.951923 TATGGGACGGGGGAGTAGCA 61.952 60.000 0.00 0.00 0.00 3.49
88 89 2.446036 GGGACGGGGGAGTAGCAT 60.446 66.667 0.00 0.00 0.00 3.79
97 98 3.697045 CGGGGGAGTAGCATATAAGAGAG 59.303 52.174 0.00 0.00 0.00 3.20
98 99 4.027437 GGGGGAGTAGCATATAAGAGAGG 58.973 52.174 0.00 0.00 0.00 3.69
118 123 9.884814 AGAGAGGAACTATAAACCATATGTAGT 57.115 33.333 1.24 0.00 41.55 2.73
122 127 9.209048 AGGAACTATAAACCATATGTAGTGTCA 57.791 33.333 1.24 0.00 36.02 3.58
226 231 5.172053 GCTTCTTACATAAAATCACGCATGC 59.828 40.000 7.91 7.91 0.00 4.06
227 232 5.809719 TCTTACATAAAATCACGCATGCA 57.190 34.783 19.57 0.00 0.00 3.96
228 233 6.375945 TCTTACATAAAATCACGCATGCAT 57.624 33.333 19.57 0.00 0.00 3.96
229 234 6.200808 TCTTACATAAAATCACGCATGCATG 58.799 36.000 22.70 22.70 0.00 4.06
230 235 4.635833 ACATAAAATCACGCATGCATGA 57.364 36.364 30.64 19.91 0.00 3.07
231 236 5.190992 ACATAAAATCACGCATGCATGAT 57.809 34.783 30.64 22.80 37.14 2.45
232 237 4.979815 ACATAAAATCACGCATGCATGATG 59.020 37.500 28.12 24.51 35.71 3.07
233 238 3.786516 AAAATCACGCATGCATGATGA 57.213 38.095 28.12 28.35 35.71 2.92
234 239 3.349488 AAATCACGCATGCATGATGAG 57.651 42.857 28.12 18.54 35.71 2.90
235 240 2.249844 ATCACGCATGCATGATGAGA 57.750 45.000 27.03 22.69 35.53 3.27
236 241 1.292992 TCACGCATGCATGATGAGAC 58.707 50.000 30.64 10.15 35.53 3.36
237 242 1.011333 CACGCATGCATGATGAGACA 58.989 50.000 30.64 0.00 35.53 3.41
238 243 1.399089 CACGCATGCATGATGAGACAA 59.601 47.619 30.64 0.00 35.53 3.18
239 244 2.086094 ACGCATGCATGATGAGACAAA 58.914 42.857 30.64 0.00 35.53 2.83
240 245 2.686405 ACGCATGCATGATGAGACAAAT 59.314 40.909 30.64 1.08 35.53 2.32
241 246 3.878699 ACGCATGCATGATGAGACAAATA 59.121 39.130 30.64 0.00 35.53 1.40
242 247 4.517832 ACGCATGCATGATGAGACAAATAT 59.482 37.500 30.64 0.00 35.53 1.28
243 248 5.086727 CGCATGCATGATGAGACAAATATC 58.913 41.667 30.64 6.02 33.89 1.63
244 249 5.106673 CGCATGCATGATGAGACAAATATCT 60.107 40.000 30.64 0.00 33.89 1.98
245 250 6.086871 GCATGCATGATGAGACAAATATCTG 58.913 40.000 30.64 0.00 33.31 2.90
246 251 6.612306 CATGCATGATGAGACAAATATCTGG 58.388 40.000 22.59 0.00 33.31 3.86
247 252 5.687780 TGCATGATGAGACAAATATCTGGT 58.312 37.500 0.00 0.00 0.00 4.00
248 253 6.124340 TGCATGATGAGACAAATATCTGGTT 58.876 36.000 0.00 0.00 0.00 3.67
249 254 6.604396 TGCATGATGAGACAAATATCTGGTTT 59.396 34.615 0.00 0.00 0.00 3.27
250 255 7.123098 TGCATGATGAGACAAATATCTGGTTTT 59.877 33.333 0.00 0.00 0.00 2.43
251 256 7.434307 GCATGATGAGACAAATATCTGGTTTTG 59.566 37.037 0.00 0.00 38.49 2.44
252 257 8.680001 CATGATGAGACAAATATCTGGTTTTGA 58.320 33.333 2.69 0.00 36.54 2.69
253 258 8.812513 TGATGAGACAAATATCTGGTTTTGAT 57.187 30.769 2.69 0.00 36.54 2.57
254 259 9.904198 TGATGAGACAAATATCTGGTTTTGATA 57.096 29.630 2.69 0.00 36.54 2.15
257 262 9.739276 TGAGACAAATATCTGGTTTTGATAAGT 57.261 29.630 2.69 0.00 36.54 2.24
258 263 9.994432 GAGACAAATATCTGGTTTTGATAAGTG 57.006 33.333 2.69 0.00 36.54 3.16
259 264 8.960591 AGACAAATATCTGGTTTTGATAAGTGG 58.039 33.333 2.69 0.00 36.54 4.00
260 265 8.877864 ACAAATATCTGGTTTTGATAAGTGGA 57.122 30.769 2.69 0.00 36.54 4.02
261 266 9.308000 ACAAATATCTGGTTTTGATAAGTGGAA 57.692 29.630 2.69 0.00 36.54 3.53
267 272 8.934023 TCTGGTTTTGATAAGTGGAATTTACT 57.066 30.769 0.00 0.00 0.00 2.24
268 273 9.010029 TCTGGTTTTGATAAGTGGAATTTACTC 57.990 33.333 0.00 0.00 0.00 2.59
269 274 8.117813 TGGTTTTGATAAGTGGAATTTACTCC 57.882 34.615 0.00 0.00 35.88 3.85
270 275 7.726291 TGGTTTTGATAAGTGGAATTTACTCCA 59.274 33.333 0.00 0.00 43.45 3.86
307 312 8.887036 AAGTGGAATTTATTCTTGTTTTCACC 57.113 30.769 2.77 0.00 37.00 4.02
308 313 8.017418 AGTGGAATTTATTCTTGTTTTCACCA 57.983 30.769 2.77 0.00 37.00 4.17
309 314 7.926018 AGTGGAATTTATTCTTGTTTTCACCAC 59.074 33.333 0.00 0.00 40.85 4.16
310 315 7.708752 GTGGAATTTATTCTTGTTTTCACCACA 59.291 33.333 0.00 0.00 40.44 4.17
311 316 7.708752 TGGAATTTATTCTTGTTTTCACCACAC 59.291 33.333 2.77 0.00 37.00 3.82
312 317 7.708752 GGAATTTATTCTTGTTTTCACCACACA 59.291 33.333 2.77 0.00 37.00 3.72
313 318 9.260002 GAATTTATTCTTGTTTTCACCACACAT 57.740 29.630 0.00 0.00 34.05 3.21
314 319 8.592105 ATTTATTCTTGTTTTCACCACACATG 57.408 30.769 0.00 0.00 0.00 3.21
315 320 3.435105 TCTTGTTTTCACCACACATGC 57.565 42.857 0.00 0.00 0.00 4.06
316 321 2.757314 TCTTGTTTTCACCACACATGCA 59.243 40.909 0.00 0.00 0.00 3.96
317 322 3.384146 TCTTGTTTTCACCACACATGCAT 59.616 39.130 0.00 0.00 0.00 3.96
318 323 3.095102 TGTTTTCACCACACATGCATG 57.905 42.857 25.09 25.09 0.00 4.06
319 324 2.223994 TGTTTTCACCACACATGCATGG 60.224 45.455 29.41 20.05 42.13 3.66
320 325 0.317799 TTTCACCACACATGCATGGC 59.682 50.000 29.41 0.00 39.84 4.40
321 326 0.826672 TTCACCACACATGCATGGCA 60.827 50.000 29.41 2.02 44.86 4.92
322 327 0.826672 TCACCACACATGCATGGCAA 60.827 50.000 29.41 3.41 43.62 4.52
323 328 0.033642 CACCACACATGCATGGCAAA 59.966 50.000 29.41 0.00 43.62 3.68
324 329 0.978151 ACCACACATGCATGGCAAAT 59.022 45.000 29.41 10.13 43.62 2.32
325 330 1.066716 ACCACACATGCATGGCAAATC 60.067 47.619 29.41 0.00 43.62 2.17
326 331 1.066787 CCACACATGCATGGCAAATCA 60.067 47.619 29.41 0.00 43.62 2.57
327 332 2.267426 CACACATGCATGGCAAATCAG 58.733 47.619 29.41 11.25 43.62 2.90
328 333 2.094442 CACACATGCATGGCAAATCAGA 60.094 45.455 29.41 0.00 43.62 3.27
329 334 2.094390 ACACATGCATGGCAAATCAGAC 60.094 45.455 29.41 0.00 43.62 3.51
330 335 1.133598 ACATGCATGGCAAATCAGACG 59.866 47.619 29.41 0.88 43.62 4.18
331 336 1.133598 CATGCATGGCAAATCAGACGT 59.866 47.619 19.40 0.00 43.62 4.34
332 337 1.246649 TGCATGGCAAATCAGACGTT 58.753 45.000 0.00 0.00 34.76 3.99
333 338 1.612950 TGCATGGCAAATCAGACGTTT 59.387 42.857 0.00 0.00 34.76 3.60
334 339 2.035704 TGCATGGCAAATCAGACGTTTT 59.964 40.909 0.00 0.00 34.76 2.43
335 340 2.663119 GCATGGCAAATCAGACGTTTTC 59.337 45.455 0.00 0.00 0.00 2.29
336 341 3.612479 GCATGGCAAATCAGACGTTTTCT 60.612 43.478 0.00 0.00 33.33 2.52
337 342 4.379394 GCATGGCAAATCAGACGTTTTCTA 60.379 41.667 0.00 0.00 31.12 2.10
338 343 5.677091 GCATGGCAAATCAGACGTTTTCTAT 60.677 40.000 0.00 0.00 31.12 1.98
339 344 5.295431 TGGCAAATCAGACGTTTTCTATG 57.705 39.130 0.00 0.00 31.12 2.23
340 345 4.155826 TGGCAAATCAGACGTTTTCTATGG 59.844 41.667 0.00 0.00 31.12 2.74
341 346 4.394920 GGCAAATCAGACGTTTTCTATGGA 59.605 41.667 0.00 0.00 31.12 3.41
342 347 5.106317 GGCAAATCAGACGTTTTCTATGGAA 60.106 40.000 0.00 0.00 31.12 3.53
343 348 6.378582 GCAAATCAGACGTTTTCTATGGAAA 58.621 36.000 0.00 0.00 39.38 3.13
344 349 6.861055 GCAAATCAGACGTTTTCTATGGAAAA 59.139 34.615 12.47 12.47 45.62 2.29
356 361 6.935741 TTCTATGGAAAAATGTATGGGTCG 57.064 37.500 0.00 0.00 0.00 4.79
357 362 5.373222 TCTATGGAAAAATGTATGGGTCGG 58.627 41.667 0.00 0.00 0.00 4.79
358 363 3.443145 TGGAAAAATGTATGGGTCGGT 57.557 42.857 0.00 0.00 0.00 4.69
359 364 3.349022 TGGAAAAATGTATGGGTCGGTC 58.651 45.455 0.00 0.00 0.00 4.79
360 365 2.353579 GGAAAAATGTATGGGTCGGTCG 59.646 50.000 0.00 0.00 0.00 4.79
361 366 3.264104 GAAAAATGTATGGGTCGGTCGA 58.736 45.455 0.00 0.00 0.00 4.20
362 367 3.553828 AAAATGTATGGGTCGGTCGAT 57.446 42.857 0.00 0.00 0.00 3.59
363 368 2.526304 AATGTATGGGTCGGTCGATG 57.474 50.000 0.00 0.00 0.00 3.84
364 369 1.410004 ATGTATGGGTCGGTCGATGT 58.590 50.000 0.00 0.00 0.00 3.06
365 370 0.742505 TGTATGGGTCGGTCGATGTC 59.257 55.000 0.00 0.00 0.00 3.06
366 371 1.030457 GTATGGGTCGGTCGATGTCT 58.970 55.000 0.00 0.00 0.00 3.41
367 372 1.001597 GTATGGGTCGGTCGATGTCTC 60.002 57.143 0.00 0.00 0.00 3.36
368 373 1.725557 ATGGGTCGGTCGATGTCTCG 61.726 60.000 0.00 0.00 46.41 4.04
380 385 2.069273 GATGTCTCGATTTATGGGCCG 58.931 52.381 0.00 0.00 0.00 6.13
381 386 0.828022 TGTCTCGATTTATGGGCCGT 59.172 50.000 2.58 2.58 0.00 5.68
382 387 1.217882 GTCTCGATTTATGGGCCGTG 58.782 55.000 8.97 0.00 0.00 4.94
383 388 0.531974 TCTCGATTTATGGGCCGTGC 60.532 55.000 8.97 0.00 0.00 5.34
394 399 2.742746 GGCCGTGCCTAGGTATACT 58.257 57.895 11.31 0.00 46.69 2.12
395 400 1.046204 GGCCGTGCCTAGGTATACTT 58.954 55.000 11.31 0.00 46.69 2.24
396 401 1.415289 GGCCGTGCCTAGGTATACTTT 59.585 52.381 11.31 0.00 46.69 2.66
397 402 2.480845 GCCGTGCCTAGGTATACTTTG 58.519 52.381 11.31 0.00 0.00 2.77
398 403 2.101917 GCCGTGCCTAGGTATACTTTGA 59.898 50.000 11.31 0.00 0.00 2.69
399 404 3.714391 CCGTGCCTAGGTATACTTTGAC 58.286 50.000 11.31 0.00 0.00 3.18
400 405 3.369385 CGTGCCTAGGTATACTTTGACG 58.631 50.000 11.31 0.00 0.00 4.35
401 406 3.065786 CGTGCCTAGGTATACTTTGACGA 59.934 47.826 11.31 0.00 0.00 4.20
402 407 4.261489 CGTGCCTAGGTATACTTTGACGAT 60.261 45.833 11.31 0.00 0.00 3.73
403 408 4.982916 GTGCCTAGGTATACTTTGACGATG 59.017 45.833 11.31 0.00 0.00 3.84
404 409 4.647853 TGCCTAGGTATACTTTGACGATGT 59.352 41.667 11.31 0.00 0.00 3.06
405 410 5.829391 TGCCTAGGTATACTTTGACGATGTA 59.171 40.000 11.31 0.00 0.00 2.29
406 411 6.492429 TGCCTAGGTATACTTTGACGATGTAT 59.508 38.462 11.31 6.50 34.21 2.29
407 412 7.028361 GCCTAGGTATACTTTGACGATGTATC 58.972 42.308 11.31 0.00 32.60 2.24
408 413 7.309012 GCCTAGGTATACTTTGACGATGTATCA 60.309 40.741 11.31 0.00 32.60 2.15
409 414 8.740906 CCTAGGTATACTTTGACGATGTATCAT 58.259 37.037 0.00 0.00 32.60 2.45
449 454 9.458727 TTTCTATCAGAAAATGAATCTGCTTCT 57.541 29.630 0.00 0.00 40.89 2.85
453 458 8.804912 ATCAGAAAATGAATCTGCTTCTAAGT 57.195 30.769 0.00 0.00 43.19 2.24
454 459 9.896645 ATCAGAAAATGAATCTGCTTCTAAGTA 57.103 29.630 0.00 0.00 43.19 2.24
455 460 9.725019 TCAGAAAATGAATCTGCTTCTAAGTAA 57.275 29.630 0.00 0.00 43.19 2.24
463 468 8.454106 TGAATCTGCTTCTAAGTAAAATCAAGC 58.546 33.333 0.00 0.00 37.38 4.01
464 469 7.928307 ATCTGCTTCTAAGTAAAATCAAGCA 57.072 32.000 4.26 4.26 42.95 3.91
465 470 7.928307 TCTGCTTCTAAGTAAAATCAAGCAT 57.072 32.000 4.72 0.00 43.84 3.79
466 471 7.755591 TCTGCTTCTAAGTAAAATCAAGCATG 58.244 34.615 4.72 0.00 43.84 4.06
467 472 6.324819 TGCTTCTAAGTAAAATCAAGCATGC 58.675 36.000 10.51 10.51 40.91 4.06
468 473 6.072008 TGCTTCTAAGTAAAATCAAGCATGCA 60.072 34.615 21.98 0.00 40.91 3.96
510 515 7.556844 TCTGGTTGATAAGTAGAATTCACTCC 58.443 38.462 8.44 6.32 0.00 3.85
513 518 7.770433 TGGTTGATAAGTAGAATTCACTCCATG 59.230 37.037 8.44 0.00 0.00 3.66
514 519 7.227512 GGTTGATAAGTAGAATTCACTCCATGG 59.772 40.741 4.97 4.97 0.00 3.66
515 520 7.437713 TGATAAGTAGAATTCACTCCATGGT 57.562 36.000 12.58 0.00 0.00 3.55
518 523 8.738645 ATAAGTAGAATTCACTCCATGGTTTC 57.261 34.615 12.58 6.87 0.00 2.78
519 524 6.126863 AGTAGAATTCACTCCATGGTTTCA 57.873 37.500 12.58 0.00 0.00 2.69
520 525 5.940470 AGTAGAATTCACTCCATGGTTTCAC 59.060 40.000 12.58 7.72 0.00 3.18
543 559 5.007034 CCACACATGTTTAACCTGGTGATA 58.993 41.667 16.62 0.00 0.00 2.15
561 579 3.314080 TGATATGTGTGATGTGCATGCTG 59.686 43.478 20.33 0.00 0.00 4.41
573 591 3.865700 CATGCTGCATGCCACTATG 57.134 52.632 27.56 10.66 42.00 2.23
574 592 0.313987 CATGCTGCATGCCACTATGG 59.686 55.000 27.56 3.16 42.00 2.74
575 593 0.106369 ATGCTGCATGCCACTATGGT 60.106 50.000 15.44 0.00 40.46 3.55
576 594 0.545646 TGCTGCATGCCACTATGGTA 59.454 50.000 16.68 0.00 40.46 3.25
581 599 2.368548 TGCATGCCACTATGGTAGGTAG 59.631 50.000 16.68 0.00 40.46 3.18
593 611 1.694696 GGTAGGTAGAGCAAGGATGGG 59.305 57.143 0.00 0.00 0.00 4.00
594 612 1.070914 GTAGGTAGAGCAAGGATGGGC 59.929 57.143 0.00 0.00 0.00 5.36
595 613 1.227674 GGTAGAGCAAGGATGGGCG 60.228 63.158 0.00 0.00 34.54 6.13
682 1155 0.462047 CGCCACGCCCTTCTTATTCT 60.462 55.000 0.00 0.00 0.00 2.40
737 1218 3.775654 CCTCACCCTCGGCCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
755 1236 2.786495 CCCCTCCTCCGTCACATCG 61.786 68.421 0.00 0.00 0.00 3.84
802 1286 0.387565 GGATCGCTTCTCCTGTCCTC 59.612 60.000 0.00 0.00 0.00 3.71
803 1287 0.387565 GATCGCTTCTCCTGTCCTCC 59.612 60.000 0.00 0.00 0.00 4.30
804 1288 0.032615 ATCGCTTCTCCTGTCCTCCT 60.033 55.000 0.00 0.00 0.00 3.69
805 1289 0.624254 TCGCTTCTCCTGTCCTCCTA 59.376 55.000 0.00 0.00 0.00 2.94
806 1290 1.028905 CGCTTCTCCTGTCCTCCTAG 58.971 60.000 0.00 0.00 0.00 3.02
807 1291 0.750249 GCTTCTCCTGTCCTCCTAGC 59.250 60.000 0.00 0.00 0.00 3.42
808 1292 1.687996 GCTTCTCCTGTCCTCCTAGCT 60.688 57.143 0.00 0.00 0.00 3.32
835 1320 2.424601 CTCGTCGTATTCACCCCACTAA 59.575 50.000 0.00 0.00 0.00 2.24
859 1352 3.314331 CACCACCGTCTCCTGCCT 61.314 66.667 0.00 0.00 0.00 4.75
860 1353 3.314331 ACCACCGTCTCCTGCCTG 61.314 66.667 0.00 0.00 0.00 4.85
861 1354 4.767255 CCACCGTCTCCTGCCTGC 62.767 72.222 0.00 0.00 0.00 4.85
862 1355 4.767255 CACCGTCTCCTGCCTGCC 62.767 72.222 0.00 0.00 0.00 4.85
864 1357 3.790437 CCGTCTCCTGCCTGCCAT 61.790 66.667 0.00 0.00 0.00 4.40
945 1438 1.092348 CACGTATCCACCTCGAGACA 58.908 55.000 15.71 0.00 0.00 3.41
946 1439 1.064208 CACGTATCCACCTCGAGACAG 59.936 57.143 15.71 0.00 0.00 3.51
948 1441 1.600013 CGTATCCACCTCGAGACAGAG 59.400 57.143 15.71 0.00 37.97 3.35
993 1487 4.289672 AGAGAAAGAGACCAGAGAGAGAGT 59.710 45.833 0.00 0.00 0.00 3.24
1206 1709 4.722535 AAGAGGAGCCAGCCCGGA 62.723 66.667 0.73 0.00 36.56 5.14
1274 1778 2.290577 GGTCCCTGAAATCTGAAGCTGT 60.291 50.000 0.00 0.00 0.00 4.40
1276 1780 3.935828 GTCCCTGAAATCTGAAGCTGTAC 59.064 47.826 0.00 0.00 0.00 2.90
1321 1825 6.042777 GCAAGCTGGTTAGGGAATTAATTTC 58.957 40.000 1.43 0.00 0.00 2.17
1694 2205 4.299547 TGGAAGTGCGAGCGCTGT 62.300 61.111 18.48 0.00 42.51 4.40
1792 2303 1.794714 GGCATCCTCTTCTCCAGGTA 58.205 55.000 0.00 0.00 32.20 3.08
1793 2304 1.414550 GGCATCCTCTTCTCCAGGTAC 59.585 57.143 0.00 0.00 32.20 3.34
1794 2305 1.067821 GCATCCTCTTCTCCAGGTACG 59.932 57.143 0.00 0.00 32.20 3.67
1795 2306 2.379972 CATCCTCTTCTCCAGGTACGT 58.620 52.381 0.00 0.00 32.20 3.57
1796 2307 3.552875 CATCCTCTTCTCCAGGTACGTA 58.447 50.000 0.00 0.00 32.20 3.57
1797 2308 2.996631 TCCTCTTCTCCAGGTACGTAC 58.003 52.381 17.56 17.56 32.20 3.67
1910 2421 7.770801 TTTATCTGAATTCTCATGGTACGTG 57.229 36.000 7.05 0.00 0.00 4.49
1980 2497 2.811431 TGTTACAAAGGGATTCACTGCG 59.189 45.455 0.00 0.00 0.00 5.18
1981 2498 1.448985 TACAAAGGGATTCACTGCGC 58.551 50.000 0.00 0.00 0.00 6.09
1982 2499 1.135315 CAAAGGGATTCACTGCGCG 59.865 57.895 0.00 0.00 0.00 6.86
1983 2500 2.690778 AAAGGGATTCACTGCGCGC 61.691 57.895 27.26 27.26 0.00 6.86
1988 2505 4.183686 ATTCACTGCGCGCATGCC 62.184 61.111 36.48 3.44 38.08 4.40
2100 2629 6.430925 TCCCTTTTCACTTGATGTGTTCATAG 59.569 38.462 0.00 0.00 46.27 2.23
2107 2636 7.610865 TCACTTGATGTGTTCATAGTCATACA 58.389 34.615 0.00 0.00 46.27 2.29
2108 2637 7.545615 TCACTTGATGTGTTCATAGTCATACAC 59.454 37.037 0.00 0.00 46.27 2.90
2109 2638 7.547019 CACTTGATGTGTTCATAGTCATACACT 59.453 37.037 0.00 0.00 41.03 3.55
2110 2639 7.761704 ACTTGATGTGTTCATAGTCATACACTC 59.238 37.037 0.00 0.00 41.03 3.51
2111 2640 7.169158 TGATGTGTTCATAGTCATACACTCA 57.831 36.000 0.00 0.00 41.03 3.41
2112 2641 7.785033 TGATGTGTTCATAGTCATACACTCAT 58.215 34.615 0.00 0.00 41.03 2.90
2113 2642 8.912988 TGATGTGTTCATAGTCATACACTCATA 58.087 33.333 0.00 0.00 41.03 2.15
2114 2643 9.186323 GATGTGTTCATAGTCATACACTCATAC 57.814 37.037 0.00 0.00 41.03 2.39
2115 2644 8.293699 TGTGTTCATAGTCATACACTCATACT 57.706 34.615 0.00 0.00 41.03 2.12
2116 2645 9.403583 TGTGTTCATAGTCATACACTCATACTA 57.596 33.333 0.00 0.00 41.03 1.82
2117 2646 9.885934 GTGTTCATAGTCATACACTCATACTAG 57.114 37.037 0.00 0.00 38.23 2.57
2190 2728 9.541143 TTGAAAGAATATTTCCTGGTCAAAAAC 57.459 29.630 0.00 0.00 0.00 2.43
2191 2729 8.923270 TGAAAGAATATTTCCTGGTCAAAAACT 58.077 29.630 0.00 0.00 0.00 2.66
2193 2731 9.764363 AAAGAATATTTCCTGGTCAAAAACTTC 57.236 29.630 0.00 0.00 0.00 3.01
2194 2732 8.477419 AGAATATTTCCTGGTCAAAAACTTCA 57.523 30.769 0.00 0.00 0.00 3.02
2196 2734 4.729227 TTTCCTGGTCAAAAACTTCACC 57.271 40.909 0.00 0.00 0.00 4.02
2197 2735 3.374042 TCCTGGTCAAAAACTTCACCA 57.626 42.857 0.00 0.00 37.37 4.17
2198 2736 3.909732 TCCTGGTCAAAAACTTCACCAT 58.090 40.909 0.00 0.00 38.26 3.55
2199 2737 3.888930 TCCTGGTCAAAAACTTCACCATC 59.111 43.478 0.00 0.00 38.26 3.51
2200 2738 3.304659 CCTGGTCAAAAACTTCACCATCG 60.305 47.826 0.00 0.00 38.26 3.84
2235 2773 3.184986 GCACTTAATTTTGGCTGTGCAAG 59.815 43.478 10.44 0.00 46.64 4.01
2236 2774 4.619973 CACTTAATTTTGGCTGTGCAAGA 58.380 39.130 0.00 0.00 0.00 3.02
2270 2809 4.702131 GTCCAAAGCTTGCCTATATATGGG 59.298 45.833 10.71 10.71 0.00 4.00
2273 2812 5.591877 CCAAAGCTTGCCTATATATGGGATC 59.408 44.000 18.76 2.81 0.00 3.36
2320 2873 1.025041 GGCATTTGTAGGTAGCCTGC 58.975 55.000 0.00 0.00 42.01 4.85
2552 3116 1.227764 AGCTATCACCTGCATGCGG 60.228 57.895 20.13 20.13 0.00 5.69
2565 3129 2.013563 GCATGCGGATCCTTGACTTCA 61.014 52.381 10.75 0.00 0.00 3.02
2594 3158 1.129917 CTCCCTCTCTCACATGGCAT 58.870 55.000 0.00 0.00 0.00 4.40
2624 3191 7.962934 TTTCTTCAACAAAGTTGAATACACG 57.037 32.000 21.35 12.10 37.72 4.49
2632 3201 6.622549 ACAAAGTTGAATACACGGTTCAAAA 58.377 32.000 3.18 0.00 44.46 2.44
2678 3255 5.111293 TCATGCATGCATATATACGAGTGG 58.889 41.667 31.73 15.26 34.91 4.00
2694 3273 3.120199 CGAGTGGTAGCCAACAAATTGAG 60.120 47.826 0.00 0.00 38.15 3.02
2723 3313 4.828939 TGGCTGATTATTTCATGTCATCCC 59.171 41.667 0.00 0.00 32.72 3.85
2739 3329 4.873827 GTCATCCCATATGTGTTAACGTGT 59.126 41.667 1.24 0.00 0.00 4.49
2745 3335 1.144969 ATGTGTTAACGTGTGGCTCG 58.855 50.000 0.26 0.00 0.00 5.03
2845 3436 0.931662 GCAGCTGCGAACAACAACAG 60.932 55.000 25.23 0.00 0.00 3.16
2847 3441 2.005537 GCTGCGAACAACAACAGCG 61.006 57.895 0.00 0.00 45.23 5.18
2850 3444 2.425124 CGAACAACAACAGCGCCG 60.425 61.111 2.29 0.00 0.00 6.46
2946 3549 1.443802 GCCACTCTTTCTCCCTTTCG 58.556 55.000 0.00 0.00 0.00 3.46
3071 3680 0.932211 ACCTCCCTATGACTACCGGT 59.068 55.000 13.98 13.98 0.00 5.28
3186 3795 0.526662 CTTCCTAGGCGTCGACAACT 59.473 55.000 17.16 14.67 0.00 3.16
3252 3861 4.189188 CGTACCAGGGACGCTCCG 62.189 72.222 12.48 0.00 37.43 4.63
3396 4005 1.340248 GACCACCGAAGACTTGACAGA 59.660 52.381 0.00 0.00 0.00 3.41
3452 4061 5.776744 AGCTCTTGTCCATGATTGTTTTTC 58.223 37.500 0.00 0.00 0.00 2.29
3547 4161 1.153369 ATGTGATCGCCTGGTTCCG 60.153 57.895 3.31 0.00 0.00 4.30
3635 4261 0.468226 TCGTCCACAGCCTGTTCTTT 59.532 50.000 0.00 0.00 0.00 2.52
3659 4285 1.429463 CTAGCCACACGAACACCTTC 58.571 55.000 0.00 0.00 0.00 3.46
3681 4307 3.786368 TGATGTCCATGGTTGTCTTCA 57.214 42.857 12.58 11.28 0.00 3.02
3682 4308 4.305539 TGATGTCCATGGTTGTCTTCAT 57.694 40.909 12.58 6.44 0.00 2.57
3772 4399 0.897863 CAAATCCGGGCCCTCAAACA 60.898 55.000 22.43 0.00 0.00 2.83
3822 4477 0.793478 CTCGTCAAATCGCGTCGTCT 60.793 55.000 5.77 0.00 0.00 4.18
3880 4537 8.552083 TCCATACTATAGCATGCAACATTAAG 57.448 34.615 21.98 9.26 0.00 1.85
3887 4544 3.991773 AGCATGCAACATTAAGCAAACTG 59.008 39.130 21.98 0.00 44.88 3.16
4008 4699 8.641499 AACTTGAAATTAAAATCAACTTCGCA 57.359 26.923 3.01 0.00 32.46 5.10
4064 4759 1.638388 CGTAGCTGTACCCGTCGTCA 61.638 60.000 0.00 0.00 0.00 4.35
4073 4768 3.991051 CCGTCGTCAGCTGGTGGT 61.991 66.667 15.13 0.00 0.00 4.16
4080 4775 2.821366 CAGCTGGTGGTGGATCGC 60.821 66.667 5.57 0.00 37.97 4.58
4086 4781 1.224592 GGTGGTGGATCGCCTGATT 59.775 57.895 6.52 0.00 34.09 2.57
4087 4782 0.815615 GGTGGTGGATCGCCTGATTC 60.816 60.000 6.52 0.00 34.09 2.52
4088 4783 1.143838 TGGTGGATCGCCTGATTCG 59.856 57.895 6.52 0.00 32.18 3.34
4203 4927 3.068881 CCTTCTCCAACGCCTCCA 58.931 61.111 0.00 0.00 0.00 3.86
4204 4928 1.374947 CCTTCTCCAACGCCTCCAA 59.625 57.895 0.00 0.00 0.00 3.53
4207 4931 0.472471 TTCTCCAACGCCTCCAACTT 59.528 50.000 0.00 0.00 0.00 2.66
4287 5019 0.318360 CATATCCGCCGTCGTAAGCA 60.318 55.000 0.00 0.00 37.18 3.91
4335 5068 2.835431 CGTCCTCATCGGGCTCCT 60.835 66.667 0.00 0.00 34.28 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.243105 CCCGTCCCATAATATAAGATCATTTTT 57.757 33.333 0.00 0.00 0.00 1.94
53 54 7.834181 CCCCGTCCCATAATATAAGATCATTTT 59.166 37.037 0.00 0.00 0.00 1.82
54 55 7.346471 CCCCGTCCCATAATATAAGATCATTT 58.654 38.462 0.00 0.00 0.00 2.32
55 56 6.126478 CCCCCGTCCCATAATATAAGATCATT 60.126 42.308 0.00 0.00 0.00 2.57
56 57 5.369699 CCCCCGTCCCATAATATAAGATCAT 59.630 44.000 0.00 0.00 0.00 2.45
57 58 4.719773 CCCCCGTCCCATAATATAAGATCA 59.280 45.833 0.00 0.00 0.00 2.92
58 59 4.966805 TCCCCCGTCCCATAATATAAGATC 59.033 45.833 0.00 0.00 0.00 2.75
59 60 4.967871 TCCCCCGTCCCATAATATAAGAT 58.032 43.478 0.00 0.00 0.00 2.40
60 61 4.202858 ACTCCCCCGTCCCATAATATAAGA 60.203 45.833 0.00 0.00 0.00 2.10
61 62 4.101856 ACTCCCCCGTCCCATAATATAAG 58.898 47.826 0.00 0.00 0.00 1.73
62 63 4.150516 ACTCCCCCGTCCCATAATATAA 57.849 45.455 0.00 0.00 0.00 0.98
63 64 3.858696 ACTCCCCCGTCCCATAATATA 57.141 47.619 0.00 0.00 0.00 0.86
64 65 2.735259 ACTCCCCCGTCCCATAATAT 57.265 50.000 0.00 0.00 0.00 1.28
65 66 2.824303 GCTACTCCCCCGTCCCATAATA 60.824 54.545 0.00 0.00 0.00 0.98
66 67 2.025636 CTACTCCCCCGTCCCATAAT 57.974 55.000 0.00 0.00 0.00 1.28
67 68 0.761702 GCTACTCCCCCGTCCCATAA 60.762 60.000 0.00 0.00 0.00 1.90
68 69 1.152398 GCTACTCCCCCGTCCCATA 60.152 63.158 0.00 0.00 0.00 2.74
69 70 2.446036 GCTACTCCCCCGTCCCAT 60.446 66.667 0.00 0.00 0.00 4.00
70 71 1.951923 TATGCTACTCCCCCGTCCCA 61.952 60.000 0.00 0.00 0.00 4.37
71 72 0.544595 ATATGCTACTCCCCCGTCCC 60.545 60.000 0.00 0.00 0.00 4.46
72 73 2.226962 TATATGCTACTCCCCCGTCC 57.773 55.000 0.00 0.00 0.00 4.79
73 74 3.428532 TCTTATATGCTACTCCCCCGTC 58.571 50.000 0.00 0.00 0.00 4.79
74 75 3.075582 TCTCTTATATGCTACTCCCCCGT 59.924 47.826 0.00 0.00 0.00 5.28
75 76 3.697045 CTCTCTTATATGCTACTCCCCCG 59.303 52.174 0.00 0.00 0.00 5.73
76 77 4.027437 CCTCTCTTATATGCTACTCCCCC 58.973 52.174 0.00 0.00 0.00 5.40
77 78 4.936802 TCCTCTCTTATATGCTACTCCCC 58.063 47.826 0.00 0.00 0.00 4.81
78 79 6.014012 AGTTCCTCTCTTATATGCTACTCCC 58.986 44.000 0.00 0.00 0.00 4.30
79 80 8.817092 ATAGTTCCTCTCTTATATGCTACTCC 57.183 38.462 0.00 0.00 0.00 3.85
84 85 9.381038 TGGTTTATAGTTCCTCTCTTATATGCT 57.619 33.333 0.00 0.00 0.00 3.79
97 98 9.826574 TTGACACTACATATGGTTTATAGTTCC 57.173 33.333 7.80 1.10 0.00 3.62
220 225 2.836479 TTTGTCTCATCATGCATGCG 57.164 45.000 22.25 14.93 31.70 4.73
226 231 8.680001 TCAAAACCAGATATTTGTCTCATCATG 58.320 33.333 0.00 0.00 37.68 3.07
227 232 8.812513 TCAAAACCAGATATTTGTCTCATCAT 57.187 30.769 0.00 0.00 37.68 2.45
228 233 8.812513 ATCAAAACCAGATATTTGTCTCATCA 57.187 30.769 0.00 0.00 37.68 3.07
231 236 9.739276 ACTTATCAAAACCAGATATTTGTCTCA 57.261 29.630 0.00 0.00 37.68 3.27
232 237 9.994432 CACTTATCAAAACCAGATATTTGTCTC 57.006 33.333 0.00 0.00 37.68 3.36
233 238 8.960591 CCACTTATCAAAACCAGATATTTGTCT 58.039 33.333 0.00 0.00 37.68 3.41
234 239 8.956426 TCCACTTATCAAAACCAGATATTTGTC 58.044 33.333 0.00 0.00 37.68 3.18
235 240 8.877864 TCCACTTATCAAAACCAGATATTTGT 57.122 30.769 0.00 0.00 37.68 2.83
241 246 9.533831 AGTAAATTCCACTTATCAAAACCAGAT 57.466 29.630 0.00 0.00 0.00 2.90
242 247 8.934023 AGTAAATTCCACTTATCAAAACCAGA 57.066 30.769 0.00 0.00 0.00 3.86
243 248 8.244113 GGAGTAAATTCCACTTATCAAAACCAG 58.756 37.037 0.00 0.00 37.20 4.00
244 249 7.726291 TGGAGTAAATTCCACTTATCAAAACCA 59.274 33.333 0.00 0.00 42.24 3.67
245 250 8.117813 TGGAGTAAATTCCACTTATCAAAACC 57.882 34.615 0.00 0.00 42.24 3.27
281 286 9.325198 GGTGAAAACAAGAATAAATTCCACTTT 57.675 29.630 0.00 0.00 37.51 2.66
282 287 8.482128 TGGTGAAAACAAGAATAAATTCCACTT 58.518 29.630 0.00 0.00 37.51 3.16
283 288 7.926018 GTGGTGAAAACAAGAATAAATTCCACT 59.074 33.333 0.00 0.00 37.51 4.00
284 289 7.708752 TGTGGTGAAAACAAGAATAAATTCCAC 59.291 33.333 0.00 0.00 37.51 4.02
285 290 7.708752 GTGTGGTGAAAACAAGAATAAATTCCA 59.291 33.333 0.00 0.00 37.51 3.53
286 291 7.708752 TGTGTGGTGAAAACAAGAATAAATTCC 59.291 33.333 0.00 0.00 37.51 3.01
287 292 8.641499 TGTGTGGTGAAAACAAGAATAAATTC 57.359 30.769 0.00 0.00 37.06 2.17
288 293 9.044150 CATGTGTGGTGAAAACAAGAATAAATT 57.956 29.630 0.00 0.00 0.00 1.82
289 294 7.171337 GCATGTGTGGTGAAAACAAGAATAAAT 59.829 33.333 0.00 0.00 0.00 1.40
290 295 6.478344 GCATGTGTGGTGAAAACAAGAATAAA 59.522 34.615 0.00 0.00 0.00 1.40
291 296 5.982516 GCATGTGTGGTGAAAACAAGAATAA 59.017 36.000 0.00 0.00 0.00 1.40
292 297 5.068329 TGCATGTGTGGTGAAAACAAGAATA 59.932 36.000 0.00 0.00 0.00 1.75
293 298 4.141981 TGCATGTGTGGTGAAAACAAGAAT 60.142 37.500 0.00 0.00 0.00 2.40
294 299 3.194329 TGCATGTGTGGTGAAAACAAGAA 59.806 39.130 0.00 0.00 0.00 2.52
295 300 2.757314 TGCATGTGTGGTGAAAACAAGA 59.243 40.909 0.00 0.00 0.00 3.02
296 301 3.162202 TGCATGTGTGGTGAAAACAAG 57.838 42.857 0.00 0.00 0.00 3.16
297 302 3.455327 CATGCATGTGTGGTGAAAACAA 58.545 40.909 18.91 0.00 0.00 2.83
298 303 2.223994 CCATGCATGTGTGGTGAAAACA 60.224 45.455 24.58 0.00 0.00 2.83
299 304 2.406130 CCATGCATGTGTGGTGAAAAC 58.594 47.619 24.58 0.00 0.00 2.43
300 305 1.270199 GCCATGCATGTGTGGTGAAAA 60.270 47.619 24.58 0.00 37.81 2.29
301 306 0.317799 GCCATGCATGTGTGGTGAAA 59.682 50.000 24.58 0.00 37.81 2.69
302 307 0.826672 TGCCATGCATGTGTGGTGAA 60.827 50.000 24.58 0.22 37.81 3.18
303 308 0.826672 TTGCCATGCATGTGTGGTGA 60.827 50.000 24.58 2.07 38.76 4.02
304 309 0.033642 TTTGCCATGCATGTGTGGTG 59.966 50.000 24.58 9.73 38.76 4.17
305 310 0.978151 ATTTGCCATGCATGTGTGGT 59.022 45.000 24.58 5.70 38.76 4.16
306 311 1.066787 TGATTTGCCATGCATGTGTGG 60.067 47.619 24.58 12.75 38.76 4.17
307 312 2.094442 TCTGATTTGCCATGCATGTGTG 60.094 45.455 24.58 11.18 38.76 3.82
308 313 2.094390 GTCTGATTTGCCATGCATGTGT 60.094 45.455 24.58 6.13 38.76 3.72
309 314 2.536365 GTCTGATTTGCCATGCATGTG 58.464 47.619 24.58 16.68 38.76 3.21
310 315 1.133598 CGTCTGATTTGCCATGCATGT 59.866 47.619 24.58 6.18 38.76 3.21
311 316 1.133598 ACGTCTGATTTGCCATGCATG 59.866 47.619 20.19 20.19 38.76 4.06
312 317 1.466856 ACGTCTGATTTGCCATGCAT 58.533 45.000 0.00 0.00 38.76 3.96
313 318 1.246649 AACGTCTGATTTGCCATGCA 58.753 45.000 0.00 0.00 36.47 3.96
314 319 2.352503 AAACGTCTGATTTGCCATGC 57.647 45.000 0.00 0.00 0.00 4.06
315 320 4.164822 AGAAAACGTCTGATTTGCCATG 57.835 40.909 0.00 0.00 34.29 3.66
316 321 5.163622 CCATAGAAAACGTCTGATTTGCCAT 60.164 40.000 0.00 0.00 37.12 4.40
317 322 4.155826 CCATAGAAAACGTCTGATTTGCCA 59.844 41.667 0.00 0.00 37.12 4.92
318 323 4.394920 TCCATAGAAAACGTCTGATTTGCC 59.605 41.667 0.00 0.00 37.12 4.52
319 324 5.545658 TCCATAGAAAACGTCTGATTTGC 57.454 39.130 0.00 0.00 37.12 3.68
332 337 6.320164 CCGACCCATACATTTTTCCATAGAAA 59.680 38.462 0.00 0.00 40.26 2.52
333 338 5.825679 CCGACCCATACATTTTTCCATAGAA 59.174 40.000 0.00 0.00 0.00 2.10
334 339 5.104277 ACCGACCCATACATTTTTCCATAGA 60.104 40.000 0.00 0.00 0.00 1.98
335 340 5.130350 ACCGACCCATACATTTTTCCATAG 58.870 41.667 0.00 0.00 0.00 2.23
336 341 5.118729 ACCGACCCATACATTTTTCCATA 57.881 39.130 0.00 0.00 0.00 2.74
337 342 3.951680 GACCGACCCATACATTTTTCCAT 59.048 43.478 0.00 0.00 0.00 3.41
338 343 3.349022 GACCGACCCATACATTTTTCCA 58.651 45.455 0.00 0.00 0.00 3.53
339 344 2.353579 CGACCGACCCATACATTTTTCC 59.646 50.000 0.00 0.00 0.00 3.13
340 345 3.264104 TCGACCGACCCATACATTTTTC 58.736 45.455 0.00 0.00 0.00 2.29
341 346 3.337694 TCGACCGACCCATACATTTTT 57.662 42.857 0.00 0.00 0.00 1.94
342 347 3.202906 CATCGACCGACCCATACATTTT 58.797 45.455 0.00 0.00 0.00 1.82
343 348 2.169769 ACATCGACCGACCCATACATTT 59.830 45.455 0.00 0.00 0.00 2.32
344 349 1.760613 ACATCGACCGACCCATACATT 59.239 47.619 0.00 0.00 0.00 2.71
345 350 1.340248 GACATCGACCGACCCATACAT 59.660 52.381 0.00 0.00 0.00 2.29
346 351 0.742505 GACATCGACCGACCCATACA 59.257 55.000 0.00 0.00 0.00 2.29
347 352 1.001597 GAGACATCGACCGACCCATAC 60.002 57.143 0.00 0.00 0.00 2.39
348 353 1.315690 GAGACATCGACCGACCCATA 58.684 55.000 0.00 0.00 0.00 2.74
349 354 2.116383 GAGACATCGACCGACCCAT 58.884 57.895 0.00 0.00 0.00 4.00
350 355 3.599584 GAGACATCGACCGACCCA 58.400 61.111 0.00 0.00 0.00 4.51
360 365 2.069273 CGGCCCATAAATCGAGACATC 58.931 52.381 0.00 0.00 0.00 3.06
361 366 1.416401 ACGGCCCATAAATCGAGACAT 59.584 47.619 0.00 0.00 0.00 3.06
362 367 0.828022 ACGGCCCATAAATCGAGACA 59.172 50.000 0.00 0.00 0.00 3.41
363 368 1.217882 CACGGCCCATAAATCGAGAC 58.782 55.000 0.00 0.00 0.00 3.36
364 369 0.531974 GCACGGCCCATAAATCGAGA 60.532 55.000 0.00 0.00 0.00 4.04
365 370 1.507141 GGCACGGCCCATAAATCGAG 61.507 60.000 0.00 0.00 44.06 4.04
366 371 1.525077 GGCACGGCCCATAAATCGA 60.525 57.895 0.00 0.00 44.06 3.59
367 372 3.030652 GGCACGGCCCATAAATCG 58.969 61.111 0.00 0.00 44.06 3.34
377 382 2.101917 TCAAAGTATACCTAGGCACGGC 59.898 50.000 9.30 0.00 0.00 5.68
378 383 3.714391 GTCAAAGTATACCTAGGCACGG 58.286 50.000 9.30 0.95 0.00 4.94
379 384 3.065786 TCGTCAAAGTATACCTAGGCACG 59.934 47.826 9.30 3.86 0.00 5.34
380 385 4.644103 TCGTCAAAGTATACCTAGGCAC 57.356 45.455 9.30 4.58 0.00 5.01
381 386 4.647853 ACATCGTCAAAGTATACCTAGGCA 59.352 41.667 9.30 0.00 0.00 4.75
382 387 5.197682 ACATCGTCAAAGTATACCTAGGC 57.802 43.478 9.30 0.00 0.00 3.93
383 388 8.107399 TGATACATCGTCAAAGTATACCTAGG 57.893 38.462 7.41 7.41 0.00 3.02
423 428 9.458727 AGAAGCAGATTCATTTTCTGATAGAAA 57.541 29.630 0.31 0.14 42.63 2.52
427 432 9.896645 ACTTAGAAGCAGATTCATTTTCTGATA 57.103 29.630 0.31 0.00 42.63 2.15
428 433 8.804912 ACTTAGAAGCAGATTCATTTTCTGAT 57.195 30.769 0.31 0.00 42.63 2.90
429 434 9.725019 TTACTTAGAAGCAGATTCATTTTCTGA 57.275 29.630 0.31 0.42 42.63 3.27
437 442 8.454106 GCTTGATTTTACTTAGAAGCAGATTCA 58.546 33.333 0.31 0.00 40.67 2.57
438 443 8.454106 TGCTTGATTTTACTTAGAAGCAGATTC 58.546 33.333 0.00 0.00 40.53 2.52
439 444 8.340618 TGCTTGATTTTACTTAGAAGCAGATT 57.659 30.769 0.00 0.00 40.53 2.40
440 445 7.928307 TGCTTGATTTTACTTAGAAGCAGAT 57.072 32.000 0.00 0.00 40.53 2.90
441 446 7.627088 GCATGCTTGATTTTACTTAGAAGCAGA 60.627 37.037 11.37 0.00 46.39 4.26
442 447 6.471519 GCATGCTTGATTTTACTTAGAAGCAG 59.528 38.462 11.37 0.00 46.39 4.24
444 449 6.252228 GTGCATGCTTGATTTTACTTAGAAGC 59.748 38.462 20.33 0.00 37.04 3.86
445 450 7.307694 TGTGCATGCTTGATTTTACTTAGAAG 58.692 34.615 20.33 0.00 0.00 2.85
446 451 7.213216 TGTGCATGCTTGATTTTACTTAGAA 57.787 32.000 20.33 0.00 0.00 2.10
447 452 6.816134 TGTGCATGCTTGATTTTACTTAGA 57.184 33.333 20.33 0.00 0.00 2.10
448 453 7.252708 TCATGTGCATGCTTGATTTTACTTAG 58.747 34.615 20.33 1.00 38.65 2.18
449 454 7.155655 TCATGTGCATGCTTGATTTTACTTA 57.844 32.000 20.33 0.00 38.65 2.24
450 455 6.028146 TCATGTGCATGCTTGATTTTACTT 57.972 33.333 20.33 1.23 38.65 2.24
451 456 5.648178 TCATGTGCATGCTTGATTTTACT 57.352 34.783 20.33 0.00 38.65 2.24
452 457 6.037726 TCATCATGTGCATGCTTGATTTTAC 58.962 36.000 20.33 6.41 38.65 2.01
453 458 6.095720 TCTCATCATGTGCATGCTTGATTTTA 59.904 34.615 20.33 10.71 38.65 1.52
454 459 5.079689 TCATCATGTGCATGCTTGATTTT 57.920 34.783 20.33 2.41 38.65 1.82
455 460 4.401202 TCTCATCATGTGCATGCTTGATTT 59.599 37.500 20.33 3.08 38.65 2.17
456 461 3.951680 TCTCATCATGTGCATGCTTGATT 59.048 39.130 20.33 7.00 38.65 2.57
457 462 3.315470 GTCTCATCATGTGCATGCTTGAT 59.685 43.478 20.33 19.61 38.65 2.57
458 463 2.681344 GTCTCATCATGTGCATGCTTGA 59.319 45.455 20.33 18.29 38.65 3.02
459 464 2.422127 TGTCTCATCATGTGCATGCTTG 59.578 45.455 20.33 13.65 38.65 4.01
460 465 2.718563 TGTCTCATCATGTGCATGCTT 58.281 42.857 20.33 0.46 38.65 3.91
461 466 2.413310 TGTCTCATCATGTGCATGCT 57.587 45.000 20.33 0.00 38.65 3.79
462 467 3.497297 TTTGTCTCATCATGTGCATGC 57.503 42.857 11.82 11.82 38.65 4.06
463 468 7.078228 CAGATATTTGTCTCATCATGTGCATG 58.922 38.462 5.86 5.86 40.09 4.06
464 469 6.206829 CCAGATATTTGTCTCATCATGTGCAT 59.793 38.462 0.00 0.00 0.00 3.96
465 470 5.529800 CCAGATATTTGTCTCATCATGTGCA 59.470 40.000 0.00 0.00 0.00 4.57
466 471 5.530171 ACCAGATATTTGTCTCATCATGTGC 59.470 40.000 0.00 0.00 0.00 4.57
467 472 7.281549 TCAACCAGATATTTGTCTCATCATGTG 59.718 37.037 0.00 0.00 0.00 3.21
468 473 7.341030 TCAACCAGATATTTGTCTCATCATGT 58.659 34.615 0.00 0.00 0.00 3.21
514 519 5.040635 CAGGTTAAACATGTGTGGTGAAAC 58.959 41.667 0.00 0.00 0.00 2.78
515 520 4.098654 CCAGGTTAAACATGTGTGGTGAAA 59.901 41.667 0.00 0.00 0.00 2.69
518 523 2.955660 ACCAGGTTAAACATGTGTGGTG 59.044 45.455 0.00 0.00 35.49 4.17
519 524 2.955660 CACCAGGTTAAACATGTGTGGT 59.044 45.455 0.00 3.37 37.30 4.16
520 525 3.218453 TCACCAGGTTAAACATGTGTGG 58.782 45.455 0.00 2.72 34.36 4.17
522 527 6.150976 CACATATCACCAGGTTAAACATGTGT 59.849 38.462 0.00 0.00 37.20 3.72
561 579 2.632996 TCTACCTACCATAGTGGCATGC 59.367 50.000 9.90 9.90 42.67 4.06
563 581 2.900546 GCTCTACCTACCATAGTGGCAT 59.099 50.000 0.00 0.00 42.67 4.40
564 582 2.317040 GCTCTACCTACCATAGTGGCA 58.683 52.381 0.00 0.00 42.67 4.92
565 583 2.317040 TGCTCTACCTACCATAGTGGC 58.683 52.381 0.00 0.00 42.67 5.01
566 584 3.322254 CCTTGCTCTACCTACCATAGTGG 59.678 52.174 0.00 0.00 45.02 4.00
567 585 4.215908 TCCTTGCTCTACCTACCATAGTG 58.784 47.826 0.00 0.00 0.00 2.74
568 586 4.537945 TCCTTGCTCTACCTACCATAGT 57.462 45.455 0.00 0.00 0.00 2.12
570 588 4.160329 CCATCCTTGCTCTACCTACCATA 58.840 47.826 0.00 0.00 0.00 2.74
571 589 2.975489 CCATCCTTGCTCTACCTACCAT 59.025 50.000 0.00 0.00 0.00 3.55
572 590 2.398588 CCATCCTTGCTCTACCTACCA 58.601 52.381 0.00 0.00 0.00 3.25
573 591 1.694696 CCCATCCTTGCTCTACCTACC 59.305 57.143 0.00 0.00 0.00 3.18
574 592 1.070914 GCCCATCCTTGCTCTACCTAC 59.929 57.143 0.00 0.00 0.00 3.18
575 593 1.424638 GCCCATCCTTGCTCTACCTA 58.575 55.000 0.00 0.00 0.00 3.08
576 594 1.690219 CGCCCATCCTTGCTCTACCT 61.690 60.000 0.00 0.00 0.00 3.08
581 599 3.512516 GCACGCCCATCCTTGCTC 61.513 66.667 0.00 0.00 32.00 4.26
593 611 1.866853 AAAAAGCTAGCCAGGCACGC 61.867 55.000 15.80 15.49 0.00 5.34
594 612 1.398390 CTAAAAAGCTAGCCAGGCACG 59.602 52.381 15.80 4.76 0.00 5.34
595 613 2.420372 GACTAAAAAGCTAGCCAGGCAC 59.580 50.000 15.80 2.14 0.00 5.01
734 1215 2.283676 GTGACGGAGGAGGGGTGA 60.284 66.667 0.00 0.00 0.00 4.02
735 1216 1.961180 GATGTGACGGAGGAGGGGTG 61.961 65.000 0.00 0.00 0.00 4.61
736 1217 1.686110 GATGTGACGGAGGAGGGGT 60.686 63.158 0.00 0.00 0.00 4.95
737 1218 2.786495 CGATGTGACGGAGGAGGGG 61.786 68.421 0.00 0.00 0.00 4.79
755 1236 1.673329 GGAAAAGGCGTCAGAGAGGAC 60.673 57.143 0.00 0.00 34.42 3.85
835 1320 1.183676 GGAGACGGTGGTGGTACTGT 61.184 60.000 0.00 0.00 42.62 3.55
859 1352 0.536724 AGACTGCGTGTGATATGGCA 59.463 50.000 0.00 0.00 0.00 4.92
860 1353 0.933097 CAGACTGCGTGTGATATGGC 59.067 55.000 0.00 0.00 0.00 4.40
861 1354 0.933097 GCAGACTGCGTGTGATATGG 59.067 55.000 12.53 0.00 31.71 2.74
945 1438 2.509964 GTCTCCCCTTCTCTCTCTCTCT 59.490 54.545 0.00 0.00 0.00 3.10
946 1439 2.745152 CGTCTCCCCTTCTCTCTCTCTC 60.745 59.091 0.00 0.00 0.00 3.20
948 1441 1.210967 TCGTCTCCCCTTCTCTCTCTC 59.789 57.143 0.00 0.00 0.00 3.20
993 1487 3.405823 TCACAGAGCATCATGTTCACA 57.594 42.857 4.11 0.00 37.82 3.58
1062 1562 2.659016 CTGCTGAAGCCGAGGTCA 59.341 61.111 0.00 0.00 41.18 4.02
1206 1709 5.081728 GGGTAACTTTTCATACCTGGGTTT 58.918 41.667 0.00 0.00 41.13 3.27
1274 1778 5.348724 GCTTGATGAGAGAAATCAACACGTA 59.651 40.000 0.00 0.00 38.73 3.57
1276 1780 4.152938 TGCTTGATGAGAGAAATCAACACG 59.847 41.667 0.00 0.00 38.73 4.49
1321 1825 4.954875 ACAGAGAGAGAAACCACAAGAAG 58.045 43.478 0.00 0.00 0.00 2.85
1571 2082 4.208686 GGCTCGGGGCAGACGTAG 62.209 72.222 2.81 0.00 44.01 3.51
1766 2277 1.219124 GAAGAGGATGCCGCAGTCA 59.781 57.895 0.00 0.00 0.00 3.41
1797 2308 1.858458 CTTGGGATACATGCGTACGTG 59.142 52.381 17.90 10.72 38.85 4.49
1813 2324 1.666054 GAGAGAATCCAGCAGCTTGG 58.334 55.000 0.00 0.00 39.70 3.61
1980 2497 0.874175 TATGTGTCTACGGCATGCGC 60.874 55.000 12.44 0.00 37.44 6.09
1981 2498 0.852777 GTATGTGTCTACGGCATGCG 59.147 55.000 12.44 9.76 0.00 4.73
1982 2499 1.934589 TGTATGTGTCTACGGCATGC 58.065 50.000 9.90 9.90 0.00 4.06
1983 2500 4.260743 CCAAATGTATGTGTCTACGGCATG 60.261 45.833 0.00 0.00 0.00 4.06
2030 2549 4.842911 GCAGCGATCGATGAATTAATTGAC 59.157 41.667 35.26 10.77 32.62 3.18
2138 2667 5.585844 GGAAATGGGAATTCGAAAATTGCAT 59.414 36.000 0.00 0.00 43.00 3.96
2190 2728 1.579698 CTGCAGGATCGATGGTGAAG 58.420 55.000 0.54 0.00 0.00 3.02
2191 2729 0.462581 GCTGCAGGATCGATGGTGAA 60.463 55.000 17.12 0.00 0.00 3.18
2193 2731 0.745486 TTGCTGCAGGATCGATGGTG 60.745 55.000 17.12 0.24 0.00 4.17
2194 2732 0.463295 CTTGCTGCAGGATCGATGGT 60.463 55.000 17.12 0.00 0.00 3.55
2196 2734 1.647629 GCTTGCTGCAGGATCGATG 59.352 57.895 17.12 2.36 42.31 3.84
2197 2735 4.137879 GCTTGCTGCAGGATCGAT 57.862 55.556 17.12 0.00 42.31 3.59
2235 2773 0.955919 CTTTGGACAGGGCCTCGTTC 60.956 60.000 0.95 5.18 0.00 3.95
2236 2774 1.073199 CTTTGGACAGGGCCTCGTT 59.927 57.895 0.95 0.00 0.00 3.85
2270 2809 5.371526 TCATCAATGCCTCTTGGTTAGATC 58.628 41.667 0.00 0.00 35.27 2.75
2273 2812 5.183713 TGTTTCATCAATGCCTCTTGGTTAG 59.816 40.000 0.00 0.00 35.27 2.34
2320 2873 2.332063 AAACGATCATACTGCAGGGG 57.668 50.000 19.93 6.94 0.00 4.79
2331 2884 7.921786 AGAAATGGAAGTATGAAAACGATCA 57.078 32.000 0.00 0.00 0.00 2.92
2389 2942 2.288640 GCTTGCTTGAATCTGCACCTTT 60.289 45.455 1.58 0.00 39.05 3.11
2552 3116 7.440856 GGAGAGTTATGATTGAAGTCAAGGATC 59.559 40.741 0.00 0.00 39.47 3.36
2565 3129 5.523588 TGTGAGAGAGGGAGAGTTATGATT 58.476 41.667 0.00 0.00 0.00 2.57
2650 3219 8.733458 ACTCGTATATATGCATGCATGAAAAAT 58.267 29.630 37.43 25.82 37.82 1.82
2653 3222 6.092533 CCACTCGTATATATGCATGCATGAAA 59.907 38.462 37.43 24.12 37.82 2.69
2654 3223 5.581874 CCACTCGTATATATGCATGCATGAA 59.418 40.000 37.43 26.39 37.82 2.57
2678 3255 5.393962 CAAGTAGCTCAATTTGTTGGCTAC 58.606 41.667 25.37 25.37 43.71 3.58
2694 3273 6.038603 TGACATGAAATAATCAGCCAAGTAGC 59.961 38.462 0.00 0.00 42.53 3.58
2723 3313 3.241963 CGAGCCACACGTTAACACATATG 60.242 47.826 6.39 0.00 0.00 1.78
2850 3444 1.954362 TTGTTGTTGCAGGTGGTGGC 61.954 55.000 0.00 0.00 0.00 5.01
2890 3493 3.950087 TGAGCATATTGTTGATGTCGC 57.050 42.857 0.00 0.00 0.00 5.19
2946 3549 4.400961 AGCGTGAGGAGGGCTTGC 62.401 66.667 0.00 0.00 31.91 4.01
3023 3632 4.410400 GTCAGGGGCTGGAACGGG 62.410 72.222 0.00 0.00 33.56 5.28
3186 3795 4.124943 CTCCTCGACCTCCCCGGA 62.125 72.222 0.73 0.00 36.31 5.14
3234 3843 3.834799 GGAGCGTCCCTGGTACGG 61.835 72.222 13.81 0.00 40.64 4.02
3396 4005 3.434637 CGCACACAAAGCTAGTTTTTGT 58.565 40.909 16.74 16.74 46.54 2.83
3540 4152 4.697756 CAGAAGCCGGCGGAACCA 62.698 66.667 33.44 0.00 39.03 3.67
3547 4161 0.383949 TTTTGTTGTCAGAAGCCGGC 59.616 50.000 21.89 21.89 0.00 6.13
3603 4221 3.562182 TGTGGACGATAGATAAGCTGGA 58.438 45.455 0.00 0.00 41.38 3.86
3659 4285 4.074259 TGAAGACAACCATGGACATCAAG 58.926 43.478 21.47 2.14 0.00 3.02
3719 4345 5.410924 TGTAGATGCTCTAATGTGTGACAC 58.589 41.667 9.14 9.14 29.58 3.67
3746 4372 1.678970 GGCCCGGATTTGCAAGTCT 60.679 57.895 19.83 0.04 0.00 3.24
3806 4460 1.609932 TGTAGACGACGCGATTTGAC 58.390 50.000 15.93 3.87 0.00 3.18
3822 4477 3.751698 CGGATATGAGAGACACGGATGTA 59.248 47.826 0.00 0.00 39.95 2.29
3880 4537 2.541762 GGAGATGATCTACGCAGTTTGC 59.458 50.000 0.00 0.00 37.78 3.68
4064 4759 4.101448 GGCGATCCACCACCAGCT 62.101 66.667 0.00 0.00 0.00 4.24
4080 4775 1.064296 CCTCCGACGACGAATCAGG 59.936 63.158 9.28 4.67 42.66 3.86
4086 4781 2.125229 CTCCTCCTCCGACGACGA 60.125 66.667 9.28 0.00 42.66 4.20
4087 4782 2.436292 ACTCCTCCTCCGACGACG 60.436 66.667 0.00 0.00 39.43 5.12
4088 4783 2.462782 CGACTCCTCCTCCGACGAC 61.463 68.421 0.00 0.00 0.00 4.34
4203 4927 1.251251 GCCATTGAGCAGTCCAAGTT 58.749 50.000 0.00 0.00 0.00 2.66
4204 4928 0.111061 TGCCATTGAGCAGTCCAAGT 59.889 50.000 0.00 0.00 38.00 3.16
4207 4931 1.246056 GCTTGCCATTGAGCAGTCCA 61.246 55.000 0.00 0.00 45.13 4.02
4271 5003 1.808390 GTTGCTTACGACGGCGGAT 60.808 57.895 18.49 0.00 43.17 4.18
4287 5019 2.341176 GTGTGTCTACCGCCGGTT 59.659 61.111 16.82 0.00 37.09 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.