Multiple sequence alignment - TraesCS6B01G153400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G153400 chr6B 100.000 5186 0 0 1 5186 157110376 157105191 0.000000e+00 9577.0
1 TraesCS6B01G153400 chr6B 80.560 3750 637 57 636 4351 157489628 157485937 0.000000e+00 2802.0
2 TraesCS6B01G153400 chr6B 81.656 3429 564 48 977 4361 156550968 156547561 0.000000e+00 2787.0
3 TraesCS6B01G153400 chr6B 81.316 3420 569 46 894 4278 156654927 156651543 0.000000e+00 2712.0
4 TraesCS6B01G153400 chr6B 82.854 834 109 13 827 1654 125052396 125051591 0.000000e+00 717.0
5 TraesCS6B01G153400 chr6B 79.497 795 149 13 936 1722 157130896 157130108 2.110000e-153 553.0
6 TraesCS6B01G153400 chr6B 90.698 86 4 1 4403 4484 156651628 156651543 1.530000e-20 111.0
7 TraesCS6B01G153400 chr6B 88.000 75 8 1 115 188 156533985 156533911 2.570000e-13 87.9
8 TraesCS6B01G153400 chr6D 96.038 3559 131 6 850 4405 82204122 82200571 0.000000e+00 5782.0
9 TraesCS6B01G153400 chr6D 87.232 3399 381 32 867 4248 82220616 82217254 0.000000e+00 3823.0
10 TraesCS6B01G153400 chr6D 82.132 3414 530 60 982 4361 81773871 81770504 0.000000e+00 2852.0
11 TraesCS6B01G153400 chr6D 81.239 3550 585 58 894 4401 81926272 81922762 0.000000e+00 2791.0
12 TraesCS6B01G153400 chr6D 85.292 2298 323 12 705 2996 83108823 83106535 0.000000e+00 2357.0
13 TraesCS6B01G153400 chr6D 79.895 2293 365 53 746 3021 46901238 46903451 0.000000e+00 1592.0
14 TraesCS6B01G153400 chr6D 78.936 1410 256 28 1622 3020 83210510 83209131 0.000000e+00 920.0
15 TraesCS6B01G153400 chr6D 87.946 224 14 10 4543 4759 362901718 362901501 8.620000e-63 252.0
16 TraesCS6B01G153400 chr6D 89.809 157 10 3 4403 4554 81922973 81922818 4.100000e-46 196.0
17 TraesCS6B01G153400 chr6D 85.263 95 11 2 95 188 81764755 81764663 1.540000e-15 95.3
18 TraesCS6B01G153400 chr6D 97.778 45 1 0 115 159 82970130 82970086 1.550000e-10 78.7
19 TraesCS6B01G153400 chr6A 90.638 3856 324 18 576 4405 98888529 98884685 0.000000e+00 5086.0
20 TraesCS6B01G153400 chr6A 86.789 3762 409 43 636 4373 99016523 99012826 0.000000e+00 4113.0
21 TraesCS6B01G153400 chr6A 83.864 3768 520 47 657 4405 98982687 98978989 0.000000e+00 3509.0
22 TraesCS6B01G153400 chr6A 82.094 3362 541 44 977 4309 98309995 98306666 0.000000e+00 2817.0
23 TraesCS6B01G153400 chr6A 81.268 3534 583 55 894 4386 98316058 98312563 0.000000e+00 2785.0
24 TraesCS6B01G153400 chr6A 92.796 583 27 4 1 575 98889018 98888443 0.000000e+00 830.0
25 TraesCS6B01G153400 chr6A 88.000 75 8 1 115 188 98257200 98257126 2.570000e-13 87.9
26 TraesCS6B01G153400 chr6A 96.078 51 2 0 111 161 98814389 98814339 3.330000e-12 84.2
27 TraesCS6B01G153400 chr7A 75.109 2298 481 72 765 3006 645087622 645089884 0.000000e+00 990.0
28 TraesCS6B01G153400 chr5B 99.594 493 2 0 4694 5186 577298411 577298903 0.000000e+00 900.0
29 TraesCS6B01G153400 chr5B 96.378 497 16 2 4692 5186 55537067 55536571 0.000000e+00 817.0
30 TraesCS6B01G153400 chr5B 94.949 495 22 3 4694 5186 712870734 712870241 0.000000e+00 773.0
31 TraesCS6B01G153400 chr5B 100.000 147 0 0 4550 4696 577298339 577298485 6.620000e-69 272.0
32 TraesCS6B01G153400 chr5B 95.570 158 5 2 4540 4696 712870816 712870660 8.620000e-63 252.0
33 TraesCS6B01G153400 chr5B 80.357 112 13 6 39 141 20172837 20172948 5.570000e-10 76.8
34 TraesCS6B01G153400 chr7B 96.378 497 16 2 4692 5186 73718771 73718275 0.000000e+00 817.0
35 TraesCS6B01G153400 chrUn 96.177 497 17 2 4692 5186 82576862 82577358 0.000000e+00 811.0
36 TraesCS6B01G153400 chrUn 94.949 495 22 3 4694 5186 77075139 77075632 0.000000e+00 773.0
37 TraesCS6B01G153400 chr3B 95.363 496 22 1 4692 5186 255989203 255989698 0.000000e+00 787.0
38 TraesCS6B01G153400 chr5A 95.171 497 21 3 4692 5186 37638296 37638791 0.000000e+00 782.0
39 TraesCS6B01G153400 chr1B 94.990 499 19 4 4694 5186 330229271 330228773 0.000000e+00 778.0
40 TraesCS6B01G153400 chr3D 89.423 208 13 6 4554 4756 388799912 388799709 2.400000e-63 254.0
41 TraesCS6B01G153400 chr3D 88.517 209 17 6 4552 4756 598901280 598901075 4.010000e-61 246.0
42 TraesCS6B01G153400 chr3D 87.981 208 15 7 4554 4756 600580116 600579914 2.410000e-58 237.0
43 TraesCS6B01G153400 chr1D 86.726 226 21 8 4539 4759 148667662 148667441 5.190000e-60 243.0
44 TraesCS6B01G153400 chr1D 86.190 210 22 6 4554 4759 419293080 419292874 2.430000e-53 220.0
45 TraesCS6B01G153400 chr7D 86.512 215 11 10 4552 4759 235370939 235371142 2.430000e-53 220.0
46 TraesCS6B01G153400 chr7D 84.112 214 21 10 4554 4759 131322335 131322127 1.470000e-45 195.0
47 TraesCS6B01G153400 chr2B 86.275 153 13 3 4406 4554 49185706 49185558 5.370000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G153400 chr6B 157105191 157110376 5185 True 9577.0 9577 100.0000 1 5186 1 chr6B.!!$R4 5185
1 TraesCS6B01G153400 chr6B 157485937 157489628 3691 True 2802.0 2802 80.5600 636 4351 1 chr6B.!!$R6 3715
2 TraesCS6B01G153400 chr6B 156547561 156550968 3407 True 2787.0 2787 81.6560 977 4361 1 chr6B.!!$R3 3384
3 TraesCS6B01G153400 chr6B 156651543 156654927 3384 True 1411.5 2712 86.0070 894 4484 2 chr6B.!!$R7 3590
4 TraesCS6B01G153400 chr6B 125051591 125052396 805 True 717.0 717 82.8540 827 1654 1 chr6B.!!$R1 827
5 TraesCS6B01G153400 chr6B 157130108 157130896 788 True 553.0 553 79.4970 936 1722 1 chr6B.!!$R5 786
6 TraesCS6B01G153400 chr6D 82200571 82204122 3551 True 5782.0 5782 96.0380 850 4405 1 chr6D.!!$R3 3555
7 TraesCS6B01G153400 chr6D 82217254 82220616 3362 True 3823.0 3823 87.2320 867 4248 1 chr6D.!!$R4 3381
8 TraesCS6B01G153400 chr6D 81770504 81773871 3367 True 2852.0 2852 82.1320 982 4361 1 chr6D.!!$R2 3379
9 TraesCS6B01G153400 chr6D 83106535 83108823 2288 True 2357.0 2357 85.2920 705 2996 1 chr6D.!!$R6 2291
10 TraesCS6B01G153400 chr6D 46901238 46903451 2213 False 1592.0 1592 79.8950 746 3021 1 chr6D.!!$F1 2275
11 TraesCS6B01G153400 chr6D 81922762 81926272 3510 True 1493.5 2791 85.5240 894 4554 2 chr6D.!!$R9 3660
12 TraesCS6B01G153400 chr6D 83209131 83210510 1379 True 920.0 920 78.9360 1622 3020 1 chr6D.!!$R7 1398
13 TraesCS6B01G153400 chr6A 99012826 99016523 3697 True 4113.0 4113 86.7890 636 4373 1 chr6A.!!$R4 3737
14 TraesCS6B01G153400 chr6A 98978989 98982687 3698 True 3509.0 3509 83.8640 657 4405 1 chr6A.!!$R3 3748
15 TraesCS6B01G153400 chr6A 98884685 98889018 4333 True 2958.0 5086 91.7170 1 4405 2 chr6A.!!$R6 4404
16 TraesCS6B01G153400 chr6A 98306666 98316058 9392 True 2801.0 2817 81.6810 894 4386 2 chr6A.!!$R5 3492
17 TraesCS6B01G153400 chr7A 645087622 645089884 2262 False 990.0 990 75.1090 765 3006 1 chr7A.!!$F1 2241
18 TraesCS6B01G153400 chr5B 577298339 577298903 564 False 586.0 900 99.7970 4550 5186 2 chr5B.!!$F2 636
19 TraesCS6B01G153400 chr5B 712870241 712870816 575 True 512.5 773 95.2595 4540 5186 2 chr5B.!!$R2 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 636 0.034670 AAGAGAAGTGATGCCAGGGC 60.035 55.000 2.62 2.62 42.35 5.19 F
2091 2207 0.178981 ACAACAGCTTCAGTGGCCAT 60.179 50.000 9.72 0.00 0.00 4.40 F
2667 8776 1.529010 CGTGTACCTATTGCTTTGCGC 60.529 52.381 0.00 0.00 39.77 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2535 2651 2.954318 CTCCATAAGGGCTGTTGGAATG 59.046 50.0 0.0 0.0 37.78 2.67 R
3078 9187 0.234884 CTCCGAAGAACACGCCAAAC 59.765 55.0 0.0 0.0 0.00 2.93 R
4281 10416 0.040958 CAACTTGTTCGGCTCTGTGC 60.041 55.0 0.0 0.0 41.94 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.785453 CCAGAGCCGGCCTTCCAC 62.785 72.222 26.15 8.02 0.00 4.02
37 38 3.710722 CAGAGCCGGCCTTCCACT 61.711 66.667 26.15 10.33 0.00 4.00
38 39 2.930562 AGAGCCGGCCTTCCACTT 60.931 61.111 26.15 0.00 0.00 3.16
39 40 2.747855 GAGCCGGCCTTCCACTTG 60.748 66.667 26.15 0.00 0.00 3.16
59 60 3.418068 GTGCCAGAGCTCACACGC 61.418 66.667 17.77 11.57 40.80 5.34
70 71 1.460504 CTCACACGCTACCCAGTCTA 58.539 55.000 0.00 0.00 0.00 2.59
94 102 5.010012 ACTTTGAACCGCTTCAGATGAAAAT 59.990 36.000 0.00 0.00 37.70 1.82
108 116 5.882000 CAGATGAAAATCACAGTCCATGGTA 59.118 40.000 12.58 0.00 0.00 3.25
109 117 6.544931 CAGATGAAAATCACAGTCCATGGTAT 59.455 38.462 12.58 0.00 0.00 2.73
169 177 6.165577 GGAAAACAACAGCAAATGTATCCAT 58.834 36.000 11.97 0.00 43.00 3.41
172 180 5.571784 ACAACAGCAAATGTATCCATCAG 57.428 39.130 0.00 0.00 43.00 2.90
190 198 2.943034 CCGAAGCTCGTACGCGTC 60.943 66.667 18.63 6.85 38.40 5.19
198 206 1.463805 CTCGTACGCGTCATAACTGG 58.536 55.000 18.63 0.00 39.49 4.00
199 207 0.804364 TCGTACGCGTCATAACTGGT 59.196 50.000 18.63 0.00 39.49 4.00
273 281 2.207501 CTCCAGCAGGCCAACCATCT 62.208 60.000 5.01 0.00 39.06 2.90
312 320 5.526115 CAACATGATTGCACTTCTTCTTGT 58.474 37.500 0.00 0.00 0.00 3.16
314 322 4.217118 ACATGATTGCACTTCTTCTTGTCC 59.783 41.667 0.00 0.00 0.00 4.02
323 331 2.550830 TCTTCTTGTCCTCCACTTGC 57.449 50.000 0.00 0.00 0.00 4.01
348 356 2.700371 TGTCCACACACTGATTGAGACT 59.300 45.455 0.00 0.00 0.00 3.24
354 362 3.119316 ACACACTGATTGAGACTCCGATC 60.119 47.826 0.00 4.69 0.00 3.69
361 369 3.685139 TTGAGACTCCGATCTTTGCTT 57.315 42.857 0.00 0.00 0.00 3.91
367 375 4.162320 AGACTCCGATCTTTGCTTTGGATA 59.838 41.667 0.00 0.00 0.00 2.59
420 428 0.037303 CCATCTGGCCGGCTGAATAT 59.963 55.000 28.56 10.31 0.00 1.28
477 486 3.118775 GGCTTTTCCTGTTCACCAAAAGT 60.119 43.478 0.00 0.00 37.89 2.66
488 497 5.888724 TGTTCACCAAAAGTCAAAGGATGTA 59.111 36.000 0.00 0.00 0.00 2.29
493 502 6.488683 CACCAAAAGTCAAAGGATGTAGGTAA 59.511 38.462 0.00 0.00 0.00 2.85
523 532 7.571080 AGATTTGTTTAGTGAAACCGGTAAA 57.429 32.000 8.00 0.00 43.74 2.01
525 534 7.916977 AGATTTGTTTAGTGAAACCGGTAAAAC 59.083 33.333 8.00 12.23 43.74 2.43
526 535 5.497635 TGTTTAGTGAAACCGGTAAAACC 57.502 39.130 8.00 0.00 43.74 3.27
529 538 3.286329 AGTGAAACCGGTAAAACCAGT 57.714 42.857 8.00 1.72 38.47 4.00
575 584 6.103997 AGGCATGCTGTAAAAATTCATCAAG 58.896 36.000 18.92 0.00 0.00 3.02
576 585 5.292589 GGCATGCTGTAAAAATTCATCAAGG 59.707 40.000 18.92 0.00 0.00 3.61
577 586 5.292589 GCATGCTGTAAAAATTCATCAAGGG 59.707 40.000 11.37 0.00 0.00 3.95
579 588 6.418057 TGCTGTAAAAATTCATCAAGGGTT 57.582 33.333 0.00 0.00 0.00 4.11
580 589 6.222389 TGCTGTAAAAATTCATCAAGGGTTG 58.778 36.000 0.00 0.00 0.00 3.77
581 590 6.041409 TGCTGTAAAAATTCATCAAGGGTTGA 59.959 34.615 0.00 0.00 45.01 3.18
582 591 6.587608 GCTGTAAAAATTCATCAAGGGTTGAG 59.412 38.462 0.00 0.00 43.98 3.02
583 592 6.991938 TGTAAAAATTCATCAAGGGTTGAGG 58.008 36.000 0.00 0.00 43.98 3.86
584 593 4.541973 AAAATTCATCAAGGGTTGAGGC 57.458 40.909 0.00 0.00 43.98 4.70
585 594 3.463048 AATTCATCAAGGGTTGAGGCT 57.537 42.857 0.00 0.00 43.98 4.58
586 595 4.591321 AATTCATCAAGGGTTGAGGCTA 57.409 40.909 0.00 0.00 43.98 3.93
587 596 3.634397 TTCATCAAGGGTTGAGGCTAG 57.366 47.619 0.00 0.00 43.98 3.42
588 597 2.832838 TCATCAAGGGTTGAGGCTAGA 58.167 47.619 0.00 0.00 43.98 2.43
589 598 3.387962 TCATCAAGGGTTGAGGCTAGAT 58.612 45.455 0.00 0.00 43.98 1.98
590 599 3.782523 TCATCAAGGGTTGAGGCTAGATT 59.217 43.478 0.00 0.00 43.98 2.40
591 600 4.228210 TCATCAAGGGTTGAGGCTAGATTT 59.772 41.667 0.00 0.00 43.98 2.17
592 601 3.955471 TCAAGGGTTGAGGCTAGATTTG 58.045 45.455 0.00 0.00 34.08 2.32
593 602 3.330701 TCAAGGGTTGAGGCTAGATTTGT 59.669 43.478 0.00 0.00 34.08 2.83
594 603 4.082125 CAAGGGTTGAGGCTAGATTTGTT 58.918 43.478 0.00 0.00 0.00 2.83
595 604 4.388577 AGGGTTGAGGCTAGATTTGTTT 57.611 40.909 0.00 0.00 0.00 2.83
596 605 5.514500 AGGGTTGAGGCTAGATTTGTTTA 57.486 39.130 0.00 0.00 0.00 2.01
597 606 5.501156 AGGGTTGAGGCTAGATTTGTTTAG 58.499 41.667 0.00 0.00 0.00 1.85
598 607 5.014228 AGGGTTGAGGCTAGATTTGTTTAGT 59.986 40.000 0.00 0.00 0.00 2.24
599 608 5.123979 GGGTTGAGGCTAGATTTGTTTAGTG 59.876 44.000 0.00 0.00 0.00 2.74
600 609 5.938125 GGTTGAGGCTAGATTTGTTTAGTGA 59.062 40.000 0.00 0.00 0.00 3.41
601 610 6.430000 GGTTGAGGCTAGATTTGTTTAGTGAA 59.570 38.462 0.00 0.00 0.00 3.18
602 611 7.361286 GGTTGAGGCTAGATTTGTTTAGTGAAG 60.361 40.741 0.00 0.00 0.00 3.02
603 612 6.769512 TGAGGCTAGATTTGTTTAGTGAAGT 58.230 36.000 0.00 0.00 0.00 3.01
604 613 6.874134 TGAGGCTAGATTTGTTTAGTGAAGTC 59.126 38.462 0.00 0.00 0.00 3.01
605 614 5.869888 AGGCTAGATTTGTTTAGTGAAGTCG 59.130 40.000 0.00 0.00 0.00 4.18
606 615 5.063564 GGCTAGATTTGTTTAGTGAAGTCGG 59.936 44.000 0.00 0.00 0.00 4.79
607 616 5.446073 GCTAGATTTGTTTAGTGAAGTCGGC 60.446 44.000 0.00 0.00 0.00 5.54
608 617 4.385825 AGATTTGTTTAGTGAAGTCGGCA 58.614 39.130 0.00 0.00 0.00 5.69
609 618 4.819630 AGATTTGTTTAGTGAAGTCGGCAA 59.180 37.500 0.00 0.00 0.00 4.52
610 619 4.545823 TTTGTTTAGTGAAGTCGGCAAG 57.454 40.909 0.00 0.00 0.00 4.01
611 620 3.462483 TGTTTAGTGAAGTCGGCAAGA 57.538 42.857 0.00 0.00 0.00 3.02
612 621 3.390135 TGTTTAGTGAAGTCGGCAAGAG 58.610 45.455 0.00 0.00 0.00 2.85
613 622 3.069016 TGTTTAGTGAAGTCGGCAAGAGA 59.931 43.478 0.00 0.00 0.00 3.10
614 623 4.056050 GTTTAGTGAAGTCGGCAAGAGAA 58.944 43.478 0.00 0.00 0.00 2.87
615 624 2.447244 AGTGAAGTCGGCAAGAGAAG 57.553 50.000 0.00 0.00 0.00 2.85
616 625 1.689273 AGTGAAGTCGGCAAGAGAAGT 59.311 47.619 0.00 0.00 0.00 3.01
617 626 1.795286 GTGAAGTCGGCAAGAGAAGTG 59.205 52.381 0.00 0.00 0.00 3.16
618 627 1.686587 TGAAGTCGGCAAGAGAAGTGA 59.313 47.619 0.00 0.00 0.00 3.41
619 628 2.300152 TGAAGTCGGCAAGAGAAGTGAT 59.700 45.455 0.00 0.00 0.00 3.06
620 629 2.376808 AGTCGGCAAGAGAAGTGATG 57.623 50.000 0.00 0.00 0.00 3.07
621 630 0.723981 GTCGGCAAGAGAAGTGATGC 59.276 55.000 0.00 0.00 38.06 3.91
625 634 1.093159 GCAAGAGAAGTGATGCCAGG 58.907 55.000 0.00 0.00 32.73 4.45
626 635 1.747709 CAAGAGAAGTGATGCCAGGG 58.252 55.000 0.00 0.00 0.00 4.45
627 636 0.034670 AAGAGAAGTGATGCCAGGGC 60.035 55.000 2.62 2.62 42.35 5.19
638 647 3.957288 GCCAGGGCAAGAGAAGTAA 57.043 52.632 5.20 0.00 41.49 2.24
639 648 1.743996 GCCAGGGCAAGAGAAGTAAG 58.256 55.000 5.20 0.00 41.49 2.34
640 649 1.279271 GCCAGGGCAAGAGAAGTAAGA 59.721 52.381 5.20 0.00 41.49 2.10
641 650 2.290323 GCCAGGGCAAGAGAAGTAAGAA 60.290 50.000 5.20 0.00 41.49 2.52
648 657 5.882557 GGGCAAGAGAAGTAAGAATTCATCA 59.117 40.000 8.44 0.00 0.00 3.07
650 659 7.094205 GGGCAAGAGAAGTAAGAATTCATCAAA 60.094 37.037 8.44 0.00 0.00 2.69
668 677 5.604758 TCAAAGATCGAGTCAAGGATGAT 57.395 39.130 0.00 0.00 38.01 2.45
678 687 6.986817 TCGAGTCAAGGATGATTAGAAAATCC 59.013 38.462 0.00 0.00 40.78 3.01
682 691 7.555554 AGTCAAGGATGATTAGAAAATCCACAG 59.444 37.037 3.91 0.00 42.04 3.66
693 702 5.111293 AGAAAATCCACAGTGCAGTTTTTG 58.889 37.500 5.78 0.00 0.00 2.44
695 704 4.470334 AATCCACAGTGCAGTTTTTGTT 57.530 36.364 0.00 0.00 0.00 2.83
696 705 3.951775 TCCACAGTGCAGTTTTTGTTT 57.048 38.095 0.00 0.00 0.00 2.83
697 706 4.264460 TCCACAGTGCAGTTTTTGTTTT 57.736 36.364 0.00 0.00 0.00 2.43
698 707 4.241681 TCCACAGTGCAGTTTTTGTTTTC 58.758 39.130 0.00 0.00 0.00 2.29
731 753 1.064758 TGGGCAGTTGACTTGTCAGTT 60.065 47.619 3.61 0.00 31.22 3.16
732 754 2.024414 GGGCAGTTGACTTGTCAGTTT 58.976 47.619 3.61 0.00 31.22 2.66
733 755 2.427095 GGGCAGTTGACTTGTCAGTTTT 59.573 45.455 3.61 0.00 31.22 2.43
758 780 2.615447 CAGCATGCAACCGATAGTGAAT 59.385 45.455 21.98 0.00 0.00 2.57
821 847 3.515104 CTGGGGGCAATTGTGTAAAATCT 59.485 43.478 7.40 0.00 0.00 2.40
823 849 4.709397 TGGGGGCAATTGTGTAAAATCTAG 59.291 41.667 7.40 0.00 0.00 2.43
838 864 9.362151 TGTAAAATCTAGTTTTCTTGACCCAAT 57.638 29.630 0.00 0.00 40.40 3.16
970 1025 3.773119 GTCAGGGGACAACATAACCTCTA 59.227 47.826 0.00 0.00 43.73 2.43
1061 1123 2.969821 TTGCACATACCTTCCCTTGT 57.030 45.000 0.00 0.00 0.00 3.16
1095 1160 1.252904 TGCTGATTTGCTTGGCCTCC 61.253 55.000 3.32 0.00 0.00 4.30
1130 1195 3.726144 GGAGCAGGAGCAGGGCTT 61.726 66.667 0.00 0.00 45.49 4.35
2091 2207 0.178981 ACAACAGCTTCAGTGGCCAT 60.179 50.000 9.72 0.00 0.00 4.40
2394 2510 7.553760 GGAGGATGCAAATTATTTGGACAAATT 59.446 33.333 17.89 1.33 43.81 1.82
2459 2575 9.778741 AATCTTGTCTTACAATCAACTTACTGA 57.221 29.630 0.00 0.00 37.48 3.41
2460 2576 9.950496 ATCTTGTCTTACAATCAACTTACTGAT 57.050 29.630 0.00 0.00 37.48 2.90
2521 2637 9.476202 TGTTCTATCTGGACATATCAAATAACG 57.524 33.333 0.00 0.00 0.00 3.18
2591 8682 1.801178 GTCAAAGAAGAGTGAAGCCCG 59.199 52.381 0.00 0.00 0.00 6.13
2667 8776 1.529010 CGTGTACCTATTGCTTTGCGC 60.529 52.381 0.00 0.00 39.77 6.09
2811 8920 5.069318 TCAACATGCAATCTCACAAACCTA 58.931 37.500 0.00 0.00 0.00 3.08
3037 9146 5.013495 GGATCAGATTCAATACCTCCATCCA 59.987 44.000 0.00 0.00 0.00 3.41
3078 9187 1.203812 GGCCGTTTTTGCAATTGCG 59.796 52.632 24.58 10.10 45.83 4.85
3124 9233 3.636300 TGCTATTCTTTTGTTGCTGGTGT 59.364 39.130 0.00 0.00 0.00 4.16
3151 9263 4.006319 CCTTGTCTCAATCAAGAAGGGTC 58.994 47.826 7.16 0.00 43.17 4.46
3152 9264 4.505566 CCTTGTCTCAATCAAGAAGGGTCA 60.506 45.833 7.16 0.00 43.17 4.02
3194 9309 4.511527 GAGAGCAATGGAGATGTTGAAGA 58.488 43.478 0.00 0.00 0.00 2.87
3687 9802 0.251165 ACCCTCAAATTGTCCACCGG 60.251 55.000 0.00 0.00 0.00 5.28
3768 9883 1.003003 GGGCTAGCCAGATTGATCCTC 59.997 57.143 34.09 9.23 37.98 3.71
3882 9997 5.187186 AGGTGATATGTACAGTTTCGGAGTT 59.813 40.000 0.33 0.00 0.00 3.01
3982 10097 1.383248 ATGAGGTCCGAGGGGAAGG 60.383 63.158 0.00 0.00 46.08 3.46
4022 10137 0.687354 ACACTTCGAGGCACAGGATT 59.313 50.000 0.00 0.00 0.00 3.01
4072 10187 0.865111 TGCTTCCAAATGTGTCGACG 59.135 50.000 11.62 0.00 0.00 5.12
4165 10280 2.202479 GCGCAAAGATCGGCCAAC 60.202 61.111 0.30 0.00 0.00 3.77
4283 10418 7.897575 AATCAGTTTGTTTTGTACTTTTGCA 57.102 28.000 0.00 0.00 0.00 4.08
4284 10419 6.698359 TCAGTTTGTTTTGTACTTTTGCAC 57.302 33.333 0.00 0.00 0.00 4.57
4285 10420 6.216569 TCAGTTTGTTTTGTACTTTTGCACA 58.783 32.000 0.00 0.00 0.00 4.57
4286 10421 6.364706 TCAGTTTGTTTTGTACTTTTGCACAG 59.635 34.615 0.00 0.00 0.00 3.66
4287 10422 6.364706 CAGTTTGTTTTGTACTTTTGCACAGA 59.635 34.615 0.00 0.00 0.00 3.41
4288 10423 6.586082 AGTTTGTTTTGTACTTTTGCACAGAG 59.414 34.615 0.00 0.00 0.00 3.35
4289 10424 4.420168 TGTTTTGTACTTTTGCACAGAGC 58.580 39.130 0.00 0.00 45.96 4.09
4290 10425 3.708563 TTTGTACTTTTGCACAGAGCC 57.291 42.857 0.00 0.00 44.83 4.70
4291 10426 1.225855 TGTACTTTTGCACAGAGCCG 58.774 50.000 0.00 0.00 44.83 5.52
4292 10427 1.202592 TGTACTTTTGCACAGAGCCGA 60.203 47.619 0.00 0.00 44.83 5.54
4293 10428 1.871039 GTACTTTTGCACAGAGCCGAA 59.129 47.619 0.00 0.00 44.83 4.30
4294 10429 0.663153 ACTTTTGCACAGAGCCGAAC 59.337 50.000 0.00 0.00 44.83 3.95
4295 10430 0.662619 CTTTTGCACAGAGCCGAACA 59.337 50.000 0.00 0.00 44.83 3.18
4296 10431 1.065401 CTTTTGCACAGAGCCGAACAA 59.935 47.619 0.00 0.00 44.83 2.83
4297 10432 0.662619 TTTGCACAGAGCCGAACAAG 59.337 50.000 0.00 0.00 44.83 3.16
4298 10433 0.463654 TTGCACAGAGCCGAACAAGT 60.464 50.000 0.00 0.00 44.83 3.16
4299 10434 0.463654 TGCACAGAGCCGAACAAGTT 60.464 50.000 0.00 0.00 44.83 2.66
4300 10435 0.040958 GCACAGAGCCGAACAAGTTG 60.041 55.000 0.00 0.00 37.23 3.16
4301 10436 0.040958 CACAGAGCCGAACAAGTTGC 60.041 55.000 1.81 0.00 0.00 4.17
4302 10437 1.166531 ACAGAGCCGAACAAGTTGCC 61.167 55.000 1.81 0.00 0.00 4.52
4303 10438 1.148273 AGAGCCGAACAAGTTGCCA 59.852 52.632 1.81 0.00 0.00 4.92
4304 10439 0.250901 AGAGCCGAACAAGTTGCCAT 60.251 50.000 1.81 0.00 0.00 4.40
4305 10440 0.169009 GAGCCGAACAAGTTGCCATC 59.831 55.000 1.81 0.00 0.00 3.51
4306 10441 0.250901 AGCCGAACAAGTTGCCATCT 60.251 50.000 1.81 0.00 0.00 2.90
4307 10442 0.598065 GCCGAACAAGTTGCCATCTT 59.402 50.000 1.81 0.00 0.00 2.40
4308 10443 1.666888 GCCGAACAAGTTGCCATCTTG 60.667 52.381 12.78 12.78 45.15 3.02
4309 10444 1.879380 CCGAACAAGTTGCCATCTTGA 59.121 47.619 19.60 0.00 43.17 3.02
4310 10445 2.095567 CCGAACAAGTTGCCATCTTGAG 60.096 50.000 19.60 11.12 43.17 3.02
4311 10446 2.666619 CGAACAAGTTGCCATCTTGAGC 60.667 50.000 19.60 10.81 43.17 4.26
4312 10447 2.283145 ACAAGTTGCCATCTTGAGCT 57.717 45.000 19.60 0.00 43.17 4.09
4313 10448 2.590821 ACAAGTTGCCATCTTGAGCTT 58.409 42.857 19.60 0.00 43.17 3.74
4314 10449 2.961062 ACAAGTTGCCATCTTGAGCTTT 59.039 40.909 19.60 0.00 43.17 3.51
4315 10450 4.144297 ACAAGTTGCCATCTTGAGCTTTA 58.856 39.130 19.60 0.00 43.17 1.85
4316 10451 4.022849 ACAAGTTGCCATCTTGAGCTTTAC 60.023 41.667 19.60 0.00 43.17 2.01
4317 10452 2.744202 AGTTGCCATCTTGAGCTTTACG 59.256 45.455 0.00 0.00 0.00 3.18
4318 10453 2.472695 TGCCATCTTGAGCTTTACGT 57.527 45.000 0.00 0.00 0.00 3.57
4319 10454 2.076100 TGCCATCTTGAGCTTTACGTG 58.924 47.619 0.00 0.00 0.00 4.49
4320 10455 2.076863 GCCATCTTGAGCTTTACGTGT 58.923 47.619 0.00 0.00 0.00 4.49
4321 10456 2.484264 GCCATCTTGAGCTTTACGTGTT 59.516 45.455 0.00 0.00 0.00 3.32
4322 10457 3.058224 GCCATCTTGAGCTTTACGTGTTT 60.058 43.478 0.00 0.00 0.00 2.83
4323 10458 4.712763 CCATCTTGAGCTTTACGTGTTTC 58.287 43.478 0.00 0.00 0.00 2.78
4324 10459 4.213270 CCATCTTGAGCTTTACGTGTTTCA 59.787 41.667 0.00 0.00 0.00 2.69
4325 10460 5.106555 CCATCTTGAGCTTTACGTGTTTCAT 60.107 40.000 0.00 0.00 0.00 2.57
4326 10461 6.373779 CATCTTGAGCTTTACGTGTTTCATT 58.626 36.000 0.00 0.00 0.00 2.57
4327 10462 7.360861 CCATCTTGAGCTTTACGTGTTTCATTA 60.361 37.037 0.00 0.00 0.00 1.90
4328 10463 7.485418 TCTTGAGCTTTACGTGTTTCATTAA 57.515 32.000 0.00 0.00 0.00 1.40
4329 10464 7.572759 TCTTGAGCTTTACGTGTTTCATTAAG 58.427 34.615 0.00 0.00 0.00 1.85
4330 10465 6.236017 TGAGCTTTACGTGTTTCATTAAGG 57.764 37.500 0.00 0.00 0.00 2.69
4331 10466 5.992829 TGAGCTTTACGTGTTTCATTAAGGA 59.007 36.000 0.00 0.00 0.00 3.36
4332 10467 6.483974 TGAGCTTTACGTGTTTCATTAAGGAA 59.516 34.615 0.00 0.00 0.00 3.36
4333 10468 7.012515 TGAGCTTTACGTGTTTCATTAAGGAAA 59.987 33.333 11.06 11.06 34.56 3.13
4334 10469 7.360361 AGCTTTACGTGTTTCATTAAGGAAAG 58.640 34.615 15.12 7.09 37.44 2.62
4335 10470 7.227910 AGCTTTACGTGTTTCATTAAGGAAAGA 59.772 33.333 15.12 11.60 37.44 2.52
4336 10471 8.021396 GCTTTACGTGTTTCATTAAGGAAAGAT 58.979 33.333 15.12 3.71 37.44 2.40
4337 10472 9.893305 CTTTACGTGTTTCATTAAGGAAAGATT 57.107 29.630 15.12 8.36 37.44 2.40
4340 10475 8.574196 ACGTGTTTCATTAAGGAAAGATTTTG 57.426 30.769 15.12 8.52 37.44 2.44
4341 10476 7.651704 ACGTGTTTCATTAAGGAAAGATTTTGG 59.348 33.333 15.12 6.04 37.44 3.28
4342 10477 7.651704 CGTGTTTCATTAAGGAAAGATTTTGGT 59.348 33.333 15.12 0.00 37.44 3.67
4343 10478 9.974980 GTGTTTCATTAAGGAAAGATTTTGGTA 57.025 29.630 15.12 0.00 37.44 3.25
4353 10488 8.298729 AGGAAAGATTTTGGTATTCATCTTCC 57.701 34.615 0.00 0.00 35.37 3.46
4354 10489 8.118600 AGGAAAGATTTTGGTATTCATCTTCCT 58.881 33.333 0.00 0.00 35.37 3.36
4355 10490 8.753133 GGAAAGATTTTGGTATTCATCTTCCTT 58.247 33.333 0.00 0.00 35.37 3.36
4356 10491 9.794685 GAAAGATTTTGGTATTCATCTTCCTTC 57.205 33.333 0.00 0.00 35.37 3.46
4357 10492 8.884124 AAGATTTTGGTATTCATCTTCCTTCA 57.116 30.769 0.00 0.00 31.59 3.02
4358 10493 8.517062 AGATTTTGGTATTCATCTTCCTTCAG 57.483 34.615 0.00 0.00 0.00 3.02
4359 10494 8.331740 AGATTTTGGTATTCATCTTCCTTCAGA 58.668 33.333 0.00 0.00 0.00 3.27
4360 10495 9.129532 GATTTTGGTATTCATCTTCCTTCAGAT 57.870 33.333 0.00 0.00 33.44 2.90
4361 10496 8.511604 TTTTGGTATTCATCTTCCTTCAGATC 57.488 34.615 0.00 0.00 30.50 2.75
4362 10497 7.443302 TTGGTATTCATCTTCCTTCAGATCT 57.557 36.000 0.00 0.00 30.50 2.75
4363 10498 7.443302 TGGTATTCATCTTCCTTCAGATCTT 57.557 36.000 0.00 0.00 30.50 2.40
4364 10499 7.865820 TGGTATTCATCTTCCTTCAGATCTTT 58.134 34.615 0.00 0.00 30.50 2.52
4365 10500 8.331740 TGGTATTCATCTTCCTTCAGATCTTTT 58.668 33.333 0.00 0.00 30.50 2.27
4366 10501 9.183368 GGTATTCATCTTCCTTCAGATCTTTTT 57.817 33.333 0.00 0.00 30.50 1.94
4384 10519 3.526931 TTTTGCGAGGACCTCTAGATG 57.473 47.619 19.39 4.53 0.00 2.90
4385 10520 2.145397 TTGCGAGGACCTCTAGATGT 57.855 50.000 19.39 0.00 0.00 3.06
4386 10521 2.145397 TGCGAGGACCTCTAGATGTT 57.855 50.000 19.39 0.00 0.00 2.71
4387 10522 2.457598 TGCGAGGACCTCTAGATGTTT 58.542 47.619 19.39 0.00 0.00 2.83
4388 10523 2.427453 TGCGAGGACCTCTAGATGTTTC 59.573 50.000 19.39 3.53 0.00 2.78
4389 10524 2.691011 GCGAGGACCTCTAGATGTTTCT 59.309 50.000 19.39 3.89 35.90 2.52
4390 10525 3.490078 GCGAGGACCTCTAGATGTTTCTG 60.490 52.174 19.39 0.41 33.17 3.02
4391 10526 3.697045 CGAGGACCTCTAGATGTTTCTGT 59.303 47.826 19.39 0.00 33.17 3.41
4392 10527 4.439426 CGAGGACCTCTAGATGTTTCTGTG 60.439 50.000 19.39 0.00 33.17 3.66
4393 10528 4.421131 AGGACCTCTAGATGTTTCTGTGT 58.579 43.478 1.95 0.00 33.17 3.72
4394 10529 4.221703 AGGACCTCTAGATGTTTCTGTGTG 59.778 45.833 1.95 0.00 33.17 3.82
4395 10530 4.021016 GGACCTCTAGATGTTTCTGTGTGT 60.021 45.833 1.95 0.00 33.17 3.72
4396 10531 5.185249 GGACCTCTAGATGTTTCTGTGTGTA 59.815 44.000 1.95 0.00 33.17 2.90
4397 10532 6.127310 GGACCTCTAGATGTTTCTGTGTGTAT 60.127 42.308 1.95 0.00 33.17 2.29
4398 10533 7.246171 ACCTCTAGATGTTTCTGTGTGTATT 57.754 36.000 0.00 0.00 33.17 1.89
4399 10534 8.362464 ACCTCTAGATGTTTCTGTGTGTATTA 57.638 34.615 0.00 0.00 33.17 0.98
4400 10535 8.982723 ACCTCTAGATGTTTCTGTGTGTATTAT 58.017 33.333 0.00 0.00 33.17 1.28
4413 10548 9.535878 TCTGTGTGTATTATATATTTTCGTGCA 57.464 29.630 0.00 0.00 0.00 4.57
4414 10549 9.797473 CTGTGTGTATTATATATTTTCGTGCAG 57.203 33.333 0.00 0.00 0.00 4.41
4415 10550 9.535878 TGTGTGTATTATATATTTTCGTGCAGA 57.464 29.630 0.00 0.00 0.00 4.26
4434 10569 7.744087 TGCAGAATGTACATGTAACTTTCTT 57.256 32.000 20.92 11.95 38.54 2.52
4435 10570 8.840833 TGCAGAATGTACATGTAACTTTCTTA 57.159 30.769 20.92 15.20 38.54 2.10
4436 10571 8.935844 TGCAGAATGTACATGTAACTTTCTTAG 58.064 33.333 20.92 16.03 38.54 2.18
4437 10572 8.936864 GCAGAATGTACATGTAACTTTCTTAGT 58.063 33.333 20.92 8.90 38.54 2.24
4515 10651 2.564062 CCTCACAGGTTGCCATTTTCAT 59.436 45.455 0.00 0.00 0.00 2.57
4531 10667 7.148967 GCCATTTTCATCTTTACGTGTTTCTTC 60.149 37.037 0.00 0.00 0.00 2.87
4545 10681 8.842358 ACGTGTTTCTTCAAGGAAAGATATTA 57.158 30.769 0.00 0.00 36.12 0.98
4665 10806 2.345942 GCACGTCCTCTCGATTTCTTTC 59.654 50.000 0.00 0.00 34.70 2.62
4666 10807 2.924290 CACGTCCTCTCGATTTCTTTCC 59.076 50.000 0.00 0.00 34.70 3.13
4667 10808 2.826725 ACGTCCTCTCGATTTCTTTCCT 59.173 45.455 0.00 0.00 34.70 3.36
4668 10809 3.258622 ACGTCCTCTCGATTTCTTTCCTT 59.741 43.478 0.00 0.00 34.70 3.36
4669 10810 4.246458 CGTCCTCTCGATTTCTTTCCTTT 58.754 43.478 0.00 0.00 0.00 3.11
4670 10811 4.327627 CGTCCTCTCGATTTCTTTCCTTTC 59.672 45.833 0.00 0.00 0.00 2.62
4671 10812 4.632251 GTCCTCTCGATTTCTTTCCTTTCC 59.368 45.833 0.00 0.00 0.00 3.13
4672 10813 3.942115 CCTCTCGATTTCTTTCCTTTCCC 59.058 47.826 0.00 0.00 0.00 3.97
4673 10814 3.596214 TCTCGATTTCTTTCCTTTCCCG 58.404 45.455 0.00 0.00 0.00 5.14
4674 10815 2.081462 TCGATTTCTTTCCTTTCCCGC 58.919 47.619 0.00 0.00 0.00 6.13
4675 10816 1.810151 CGATTTCTTTCCTTTCCCGCA 59.190 47.619 0.00 0.00 0.00 5.69
4676 10817 2.414161 CGATTTCTTTCCTTTCCCGCAC 60.414 50.000 0.00 0.00 0.00 5.34
4677 10818 0.948678 TTTCTTTCCTTTCCCGCACG 59.051 50.000 0.00 0.00 0.00 5.34
4678 10819 1.512156 TTCTTTCCTTTCCCGCACGC 61.512 55.000 0.00 0.00 0.00 5.34
4679 10820 2.978018 CTTTCCTTTCCCGCACGCC 61.978 63.158 0.00 0.00 0.00 5.68
4680 10821 3.485346 TTTCCTTTCCCGCACGCCT 62.485 57.895 0.00 0.00 0.00 5.52
4681 10822 3.894547 TTCCTTTCCCGCACGCCTC 62.895 63.158 0.00 0.00 0.00 4.70
4689 10830 4.933064 CGCACGCCTCCCGATCTC 62.933 72.222 0.00 0.00 41.02 2.75
4690 10831 4.593864 GCACGCCTCCCGATCTCC 62.594 72.222 0.00 0.00 41.02 3.71
4691 10832 2.835431 CACGCCTCCCGATCTCCT 60.835 66.667 0.00 0.00 41.02 3.69
4692 10833 2.042843 ACGCCTCCCGATCTCCTT 60.043 61.111 0.00 0.00 41.02 3.36
4693 10834 2.128507 ACGCCTCCCGATCTCCTTC 61.129 63.158 0.00 0.00 41.02 3.46
4694 10835 2.862223 CGCCTCCCGATCTCCTTCC 61.862 68.421 0.00 0.00 40.02 3.46
4695 10836 1.458588 GCCTCCCGATCTCCTTCCT 60.459 63.158 0.00 0.00 0.00 3.36
4696 10837 1.468506 GCCTCCCGATCTCCTTCCTC 61.469 65.000 0.00 0.00 0.00 3.71
4697 10838 0.830023 CCTCCCGATCTCCTTCCTCC 60.830 65.000 0.00 0.00 0.00 4.30
4698 10839 0.830023 CTCCCGATCTCCTTCCTCCC 60.830 65.000 0.00 0.00 0.00 4.30
4699 10840 2.203771 CCCGATCTCCTTCCTCCCG 61.204 68.421 0.00 0.00 0.00 5.14
4700 10841 1.152735 CCGATCTCCTTCCTCCCGA 60.153 63.158 0.00 0.00 0.00 5.14
4701 10842 0.540830 CCGATCTCCTTCCTCCCGAT 60.541 60.000 0.00 0.00 0.00 4.18
4702 10843 0.885196 CGATCTCCTTCCTCCCGATC 59.115 60.000 0.00 0.00 0.00 3.69
4703 10844 1.546773 CGATCTCCTTCCTCCCGATCT 60.547 57.143 0.00 0.00 0.00 2.75
4704 10845 2.167662 GATCTCCTTCCTCCCGATCTC 58.832 57.143 0.00 0.00 0.00 2.75
4705 10846 0.186386 TCTCCTTCCTCCCGATCTCC 59.814 60.000 0.00 0.00 0.00 3.71
4706 10847 0.187361 CTCCTTCCTCCCGATCTCCT 59.813 60.000 0.00 0.00 0.00 3.69
4707 10848 0.637195 TCCTTCCTCCCGATCTCCTT 59.363 55.000 0.00 0.00 0.00 3.36
4708 10849 1.044611 CCTTCCTCCCGATCTCCTTC 58.955 60.000 0.00 0.00 0.00 3.46
4709 10850 1.044611 CTTCCTCCCGATCTCCTTCC 58.955 60.000 0.00 0.00 0.00 3.46
4710 10851 0.637195 TTCCTCCCGATCTCCTTCCT 59.363 55.000 0.00 0.00 0.00 3.36
4711 10852 0.637195 TCCTCCCGATCTCCTTCCTT 59.363 55.000 0.00 0.00 0.00 3.36
4712 10853 1.008449 TCCTCCCGATCTCCTTCCTTT 59.992 52.381 0.00 0.00 0.00 3.11
4713 10854 1.414550 CCTCCCGATCTCCTTCCTTTC 59.585 57.143 0.00 0.00 0.00 2.62
4714 10855 1.414550 CTCCCGATCTCCTTCCTTTCC 59.585 57.143 0.00 0.00 0.00 3.13
4715 10856 0.470341 CCCGATCTCCTTCCTTTCCC 59.530 60.000 0.00 0.00 0.00 3.97
4716 10857 0.105039 CCGATCTCCTTCCTTTCCCG 59.895 60.000 0.00 0.00 0.00 5.14
4717 10858 0.530870 CGATCTCCTTCCTTTCCCGC 60.531 60.000 0.00 0.00 0.00 6.13
4718 10859 0.541863 GATCTCCTTCCTTTCCCGCA 59.458 55.000 0.00 0.00 0.00 5.69
4719 10860 0.253327 ATCTCCTTCCTTTCCCGCAC 59.747 55.000 0.00 0.00 0.00 5.34
4720 10861 1.741770 CTCCTTCCTTTCCCGCACG 60.742 63.158 0.00 0.00 0.00 5.34
4721 10862 2.032071 CCTTCCTTTCCCGCACGT 59.968 61.111 0.00 0.00 0.00 4.49
4722 10863 2.033194 CCTTCCTTTCCCGCACGTC 61.033 63.158 0.00 0.00 0.00 4.34
4723 10864 2.031465 TTCCTTTCCCGCACGTCC 59.969 61.111 0.00 0.00 0.00 4.79
4724 10865 2.450479 CTTCCTTTCCCGCACGTCCT 62.450 60.000 0.00 0.00 0.00 3.85
4725 10866 2.434359 CCTTTCCCGCACGTCCTC 60.434 66.667 0.00 0.00 0.00 3.71
4726 10867 2.657237 CTTTCCCGCACGTCCTCT 59.343 61.111 0.00 0.00 0.00 3.69
4727 10868 1.446272 CTTTCCCGCACGTCCTCTC 60.446 63.158 0.00 0.00 0.00 3.20
4728 10869 3.277211 TTTCCCGCACGTCCTCTCG 62.277 63.158 0.00 0.00 0.00 4.04
4729 10870 4.710167 TCCCGCACGTCCTCTCGA 62.710 66.667 0.00 0.00 34.70 4.04
4730 10871 3.518998 CCCGCACGTCCTCTCGAT 61.519 66.667 0.00 0.00 34.70 3.59
4731 10872 2.490217 CCGCACGTCCTCTCGATT 59.510 61.111 0.00 0.00 34.70 3.34
4732 10873 1.153823 CCGCACGTCCTCTCGATTT 60.154 57.895 0.00 0.00 34.70 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.302271 TGAGCTCTGGCACTGCAAG 60.302 57.895 16.19 0.36 41.70 4.01
37 38 1.598962 GTGAGCTCTGGCACTGCAA 60.599 57.895 16.19 0.00 41.70 4.08
38 39 2.031616 GTGAGCTCTGGCACTGCA 59.968 61.111 16.19 0.00 41.70 4.41
39 40 2.031616 TGTGAGCTCTGGCACTGC 59.968 61.111 16.19 0.00 41.70 4.40
40 41 2.025969 CGTGTGAGCTCTGGCACTG 61.026 63.158 23.54 16.94 41.70 3.66
41 42 2.341543 CGTGTGAGCTCTGGCACT 59.658 61.111 23.54 0.00 41.70 4.40
59 60 3.846360 CGGTTCAAAGTAGACTGGGTAG 58.154 50.000 0.00 0.00 0.00 3.18
70 71 3.126001 TCATCTGAAGCGGTTCAAAGT 57.874 42.857 28.03 15.32 42.27 2.66
108 116 5.008613 CCACTGGCGCACTATTATTTTGTAT 59.991 40.000 10.83 0.00 0.00 2.29
109 117 4.334203 CCACTGGCGCACTATTATTTTGTA 59.666 41.667 10.83 0.00 0.00 2.41
190 198 5.882557 AGCATGAACTTCCTTACCAGTTATG 59.117 40.000 0.00 0.00 33.22 1.90
198 206 4.327680 ACCTGAAGCATGAACTTCCTTAC 58.672 43.478 0.00 0.00 44.50 2.34
199 207 4.041567 TGACCTGAAGCATGAACTTCCTTA 59.958 41.667 0.00 0.00 44.50 2.69
273 281 1.629353 TGTTGCTTAATGGACGGGGTA 59.371 47.619 0.00 0.00 0.00 3.69
323 331 2.611751 TCAATCAGTGTGTGGACAAACG 59.388 45.455 0.00 0.00 39.07 3.60
348 356 3.206150 GCTATCCAAAGCAAAGATCGGA 58.794 45.455 0.00 0.00 42.30 4.55
361 369 2.083774 CGAAAGGTGCTTGCTATCCAA 58.916 47.619 0.00 0.00 0.00 3.53
420 428 9.606631 AAAAACAGTTGGTAAAGATATGCAAAA 57.393 25.926 0.00 0.00 0.00 2.44
452 461 0.591659 GGTGAACAGGAAAAGCCGTC 59.408 55.000 0.00 0.00 43.43 4.79
477 486 7.801893 TCTAACCTTTACCTACATCCTTTGA 57.198 36.000 0.00 0.00 0.00 2.69
488 497 9.856162 TTCACTAAACAAATCTAACCTTTACCT 57.144 29.630 0.00 0.00 0.00 3.08
493 502 7.255346 CCGGTTTCACTAAACAAATCTAACCTT 60.255 37.037 0.00 0.00 45.68 3.50
517 526 4.127171 CCCTGATATCACTGGTTTTACCG 58.873 47.826 0.00 0.00 42.58 4.02
523 532 2.578021 ACTTGCCCTGATATCACTGGTT 59.422 45.455 14.92 0.07 0.00 3.67
525 534 4.422073 TTACTTGCCCTGATATCACTGG 57.578 45.455 0.00 6.73 0.00 4.00
526 535 5.431765 ACTTTACTTGCCCTGATATCACTG 58.568 41.667 0.00 0.00 0.00 3.66
529 538 6.591935 CCTTACTTTACTTGCCCTGATATCA 58.408 40.000 5.07 5.07 0.00 2.15
575 584 5.123979 CACTAAACAAATCTAGCCTCAACCC 59.876 44.000 0.00 0.00 0.00 4.11
576 585 5.938125 TCACTAAACAAATCTAGCCTCAACC 59.062 40.000 0.00 0.00 0.00 3.77
577 586 7.173390 ACTTCACTAAACAAATCTAGCCTCAAC 59.827 37.037 0.00 0.00 0.00 3.18
579 588 6.769512 ACTTCACTAAACAAATCTAGCCTCA 58.230 36.000 0.00 0.00 0.00 3.86
580 589 6.035112 CGACTTCACTAAACAAATCTAGCCTC 59.965 42.308 0.00 0.00 0.00 4.70
581 590 5.869888 CGACTTCACTAAACAAATCTAGCCT 59.130 40.000 0.00 0.00 0.00 4.58
582 591 5.063564 CCGACTTCACTAAACAAATCTAGCC 59.936 44.000 0.00 0.00 0.00 3.93
583 592 5.446073 GCCGACTTCACTAAACAAATCTAGC 60.446 44.000 0.00 0.00 0.00 3.42
584 593 5.637810 TGCCGACTTCACTAAACAAATCTAG 59.362 40.000 0.00 0.00 0.00 2.43
585 594 5.543714 TGCCGACTTCACTAAACAAATCTA 58.456 37.500 0.00 0.00 0.00 1.98
586 595 4.385825 TGCCGACTTCACTAAACAAATCT 58.614 39.130 0.00 0.00 0.00 2.40
587 596 4.742438 TGCCGACTTCACTAAACAAATC 57.258 40.909 0.00 0.00 0.00 2.17
588 597 4.819630 TCTTGCCGACTTCACTAAACAAAT 59.180 37.500 0.00 0.00 0.00 2.32
589 598 4.193090 TCTTGCCGACTTCACTAAACAAA 58.807 39.130 0.00 0.00 0.00 2.83
590 599 3.799366 TCTTGCCGACTTCACTAAACAA 58.201 40.909 0.00 0.00 0.00 2.83
591 600 3.069016 TCTCTTGCCGACTTCACTAAACA 59.931 43.478 0.00 0.00 0.00 2.83
592 601 3.650139 TCTCTTGCCGACTTCACTAAAC 58.350 45.455 0.00 0.00 0.00 2.01
593 602 4.202223 ACTTCTCTTGCCGACTTCACTAAA 60.202 41.667 0.00 0.00 0.00 1.85
594 603 3.321111 ACTTCTCTTGCCGACTTCACTAA 59.679 43.478 0.00 0.00 0.00 2.24
595 604 2.891580 ACTTCTCTTGCCGACTTCACTA 59.108 45.455 0.00 0.00 0.00 2.74
596 605 1.689273 ACTTCTCTTGCCGACTTCACT 59.311 47.619 0.00 0.00 0.00 3.41
597 606 1.795286 CACTTCTCTTGCCGACTTCAC 59.205 52.381 0.00 0.00 0.00 3.18
598 607 1.686587 TCACTTCTCTTGCCGACTTCA 59.313 47.619 0.00 0.00 0.00 3.02
599 608 2.440539 TCACTTCTCTTGCCGACTTC 57.559 50.000 0.00 0.00 0.00 3.01
600 609 2.693069 CATCACTTCTCTTGCCGACTT 58.307 47.619 0.00 0.00 0.00 3.01
601 610 1.674221 GCATCACTTCTCTTGCCGACT 60.674 52.381 0.00 0.00 0.00 4.18
602 611 0.723981 GCATCACTTCTCTTGCCGAC 59.276 55.000 0.00 0.00 0.00 4.79
603 612 0.391661 GGCATCACTTCTCTTGCCGA 60.392 55.000 0.00 0.00 44.58 5.54
604 613 2.093216 GGCATCACTTCTCTTGCCG 58.907 57.895 0.00 0.00 44.58 5.69
606 615 1.093159 CCTGGCATCACTTCTCTTGC 58.907 55.000 0.00 0.00 0.00 4.01
607 616 1.747709 CCCTGGCATCACTTCTCTTG 58.252 55.000 0.00 0.00 0.00 3.02
608 617 0.034670 GCCCTGGCATCACTTCTCTT 60.035 55.000 2.58 0.00 41.49 2.85
609 618 1.606531 GCCCTGGCATCACTTCTCT 59.393 57.895 2.58 0.00 41.49 3.10
610 619 4.232310 GCCCTGGCATCACTTCTC 57.768 61.111 2.58 0.00 41.49 2.87
620 629 1.279271 TCTTACTTCTCTTGCCCTGGC 59.721 52.381 0.00 0.00 42.35 4.85
621 630 3.703001 TTCTTACTTCTCTTGCCCTGG 57.297 47.619 0.00 0.00 0.00 4.45
622 631 5.248640 TGAATTCTTACTTCTCTTGCCCTG 58.751 41.667 7.05 0.00 0.00 4.45
623 632 5.505181 TGAATTCTTACTTCTCTTGCCCT 57.495 39.130 7.05 0.00 0.00 5.19
624 633 5.882557 TGATGAATTCTTACTTCTCTTGCCC 59.117 40.000 7.05 0.00 0.00 5.36
625 634 6.992063 TGATGAATTCTTACTTCTCTTGCC 57.008 37.500 7.05 0.00 0.00 4.52
626 635 8.725148 TCTTTGATGAATTCTTACTTCTCTTGC 58.275 33.333 7.05 0.00 0.00 4.01
629 638 9.311916 CGATCTTTGATGAATTCTTACTTCTCT 57.688 33.333 7.05 0.00 0.00 3.10
630 639 9.307121 TCGATCTTTGATGAATTCTTACTTCTC 57.693 33.333 7.05 0.00 0.00 2.87
631 640 9.311916 CTCGATCTTTGATGAATTCTTACTTCT 57.688 33.333 7.05 0.00 0.00 2.85
632 641 9.092876 ACTCGATCTTTGATGAATTCTTACTTC 57.907 33.333 7.05 0.00 0.00 3.01
633 642 9.092876 GACTCGATCTTTGATGAATTCTTACTT 57.907 33.333 7.05 0.00 0.00 2.24
634 643 8.253810 TGACTCGATCTTTGATGAATTCTTACT 58.746 33.333 7.05 0.00 0.00 2.24
635 644 8.412608 TGACTCGATCTTTGATGAATTCTTAC 57.587 34.615 7.05 0.00 0.00 2.34
636 645 9.091784 CTTGACTCGATCTTTGATGAATTCTTA 57.908 33.333 7.05 0.00 0.00 2.10
637 646 7.065563 CCTTGACTCGATCTTTGATGAATTCTT 59.934 37.037 7.05 0.00 0.00 2.52
638 647 6.538021 CCTTGACTCGATCTTTGATGAATTCT 59.462 38.462 7.05 0.00 0.00 2.40
639 648 6.536582 TCCTTGACTCGATCTTTGATGAATTC 59.463 38.462 0.00 0.00 0.00 2.17
640 649 6.409704 TCCTTGACTCGATCTTTGATGAATT 58.590 36.000 0.00 0.00 0.00 2.17
641 650 5.982356 TCCTTGACTCGATCTTTGATGAAT 58.018 37.500 0.00 0.00 0.00 2.57
648 657 7.353414 TCTAATCATCCTTGACTCGATCTTT 57.647 36.000 0.00 0.00 33.85 2.52
650 659 6.968263 TTCTAATCATCCTTGACTCGATCT 57.032 37.500 0.00 0.00 33.85 2.75
654 663 6.763135 TGGATTTTCTAATCATCCTTGACTCG 59.237 38.462 0.00 0.00 41.62 4.18
668 677 6.463995 AAAACTGCACTGTGGATTTTCTAA 57.536 33.333 15.72 0.00 0.00 2.10
678 687 4.685628 ACAGAAAACAAAAACTGCACTGTG 59.314 37.500 2.76 2.76 35.31 3.66
682 691 4.264380 CCGTACAGAAAACAAAAACTGCAC 59.736 41.667 0.00 0.00 34.25 4.57
693 702 3.119955 GCCCAATCTTCCGTACAGAAAAC 60.120 47.826 0.00 0.00 0.00 2.43
695 704 2.039216 TGCCCAATCTTCCGTACAGAAA 59.961 45.455 0.00 0.00 0.00 2.52
696 705 1.626321 TGCCCAATCTTCCGTACAGAA 59.374 47.619 0.00 0.00 0.00 3.02
697 706 1.207089 CTGCCCAATCTTCCGTACAGA 59.793 52.381 0.00 0.00 0.00 3.41
698 707 1.066143 ACTGCCCAATCTTCCGTACAG 60.066 52.381 0.00 0.00 0.00 2.74
731 753 3.932545 ATCGGTTGCATGCTGTAAAAA 57.067 38.095 20.33 0.00 0.00 1.94
732 754 4.006989 ACTATCGGTTGCATGCTGTAAAA 58.993 39.130 20.33 0.58 0.00 1.52
733 755 3.373748 CACTATCGGTTGCATGCTGTAAA 59.626 43.478 20.33 1.02 0.00 2.01
821 847 6.975772 CACGAAAAATTGGGTCAAGAAAACTA 59.024 34.615 0.00 0.00 0.00 2.24
823 849 5.006261 CCACGAAAAATTGGGTCAAGAAAAC 59.994 40.000 0.00 0.00 0.00 2.43
838 864 1.137479 AGTCGGAGTCACCACGAAAAA 59.863 47.619 0.00 0.00 38.46 1.94
970 1025 3.181434 TGGTGAAACTAGCATGGGAACTT 60.181 43.478 0.00 0.00 36.74 2.66
1061 1123 0.949397 CAGCAGCACAAGAGCAAAGA 59.051 50.000 0.00 0.00 36.85 2.52
1130 1195 1.258445 GCCGAGGAACTGGAGAAGGA 61.258 60.000 0.00 0.00 41.55 3.36
1424 1492 2.418368 TGACAACTTGTGCAGGTCTT 57.582 45.000 0.00 0.00 0.00 3.01
2091 2207 5.070446 ACATGAGTAGATGCTTTCCGGAATA 59.930 40.000 19.62 8.26 0.00 1.75
2443 2559 9.952030 TGGTATTGAATCAGTAAGTTGATTGTA 57.048 29.630 6.02 0.00 45.30 2.41
2459 2575 6.378280 GGTTTTGATCCAGACTGGTATTGAAT 59.622 38.462 21.06 6.11 39.03 2.57
2460 2576 5.710099 GGTTTTGATCCAGACTGGTATTGAA 59.290 40.000 21.06 9.31 39.03 2.69
2535 2651 2.954318 CTCCATAAGGGCTGTTGGAATG 59.046 50.000 0.00 0.00 37.78 2.67
2591 8682 5.567430 ACTCAAATACCCTTGGGTCTAAAC 58.433 41.667 15.49 0.00 34.90 2.01
2667 8776 6.149308 TGTTGTTGCTTAGATCCAGTACATTG 59.851 38.462 0.00 0.00 0.00 2.82
2811 8920 2.608261 GCTCGACAAGTCTAACAGCTGT 60.608 50.000 15.25 15.25 0.00 4.40
3050 9159 4.328536 TGCAAAAACGGCCTTCTTATCTA 58.671 39.130 0.00 0.00 0.00 1.98
3078 9187 0.234884 CTCCGAAGAACACGCCAAAC 59.765 55.000 0.00 0.00 0.00 2.93
3124 9233 5.551305 TTCTTGATTGAGACAAGGAGACA 57.449 39.130 0.00 0.00 43.11 3.41
3151 9263 6.064060 TCTCCCTTCTATGTTTTGCCATATG 58.936 40.000 0.00 0.00 0.00 1.78
3152 9264 6.266131 TCTCCCTTCTATGTTTTGCCATAT 57.734 37.500 0.00 0.00 0.00 1.78
3194 9309 7.067496 TCTGAACTGGAGTAGAATGAAGTTT 57.933 36.000 0.00 0.00 0.00 2.66
3470 9585 2.819608 CCCCACAGTGGTACAAGATTTG 59.180 50.000 18.82 0.00 44.16 2.32
3687 9802 5.440610 AGGATGTTACTGGATTTGATGTCC 58.559 41.667 0.00 0.00 36.26 4.02
3768 9883 1.613437 GTGACATGAGTTTGGTTGGGG 59.387 52.381 0.00 0.00 0.00 4.96
3882 9997 0.681175 TGAGCAGCTCAAGCAGTACA 59.319 50.000 23.41 0.00 45.16 2.90
3982 10097 0.833949 GGATCCAGGACCTCAACCTC 59.166 60.000 6.95 0.00 35.35 3.85
4022 10137 7.288810 AGCACCTTTAACATTTGATCTTCAA 57.711 32.000 0.00 0.00 34.03 2.69
4072 10187 1.758280 TGGCCTCATGAATTGATTGCC 59.242 47.619 3.32 8.53 45.63 4.52
4147 10262 2.671276 TTGGCCGATCTTTGCGCA 60.671 55.556 5.66 5.66 0.00 6.09
4148 10263 2.202479 GTTGGCCGATCTTTGCGC 60.202 61.111 0.00 0.00 0.00 6.09
4149 10264 1.013596 TATGTTGGCCGATCTTTGCG 58.986 50.000 0.00 0.00 0.00 4.85
4150 10265 1.742831 TGTATGTTGGCCGATCTTTGC 59.257 47.619 0.00 0.00 0.00 3.68
4165 10280 7.790823 TCTATCATGTGTGGTTCATTGTATG 57.209 36.000 0.00 0.00 0.00 2.39
4257 10392 9.593134 TGCAAAAGTACAAAACAAACTGATTAT 57.407 25.926 0.00 0.00 0.00 1.28
4258 10393 8.865001 GTGCAAAAGTACAAAACAAACTGATTA 58.135 29.630 0.00 0.00 0.00 1.75
4261 10396 6.216569 TGTGCAAAAGTACAAAACAAACTGA 58.783 32.000 0.00 0.00 0.00 3.41
4262 10397 6.364706 TCTGTGCAAAAGTACAAAACAAACTG 59.635 34.615 0.00 0.00 0.00 3.16
4263 10398 6.451393 TCTGTGCAAAAGTACAAAACAAACT 58.549 32.000 0.00 0.00 0.00 2.66
4264 10399 6.669741 GCTCTGTGCAAAAGTACAAAACAAAC 60.670 38.462 0.00 0.00 42.31 2.93
4265 10400 5.347364 GCTCTGTGCAAAAGTACAAAACAAA 59.653 36.000 0.00 0.00 42.31 2.83
4266 10401 4.862018 GCTCTGTGCAAAAGTACAAAACAA 59.138 37.500 0.00 0.00 42.31 2.83
4267 10402 4.420168 GCTCTGTGCAAAAGTACAAAACA 58.580 39.130 0.00 0.00 42.31 2.83
4268 10403 3.796717 GGCTCTGTGCAAAAGTACAAAAC 59.203 43.478 3.96 0.00 45.15 2.43
4269 10404 3.488384 CGGCTCTGTGCAAAAGTACAAAA 60.488 43.478 3.96 0.00 45.15 2.44
4270 10405 2.032799 CGGCTCTGTGCAAAAGTACAAA 59.967 45.455 3.96 0.00 45.15 2.83
4271 10406 1.601903 CGGCTCTGTGCAAAAGTACAA 59.398 47.619 3.96 0.00 45.15 2.41
4272 10407 1.202592 TCGGCTCTGTGCAAAAGTACA 60.203 47.619 3.96 0.00 45.15 2.90
4273 10408 1.508632 TCGGCTCTGTGCAAAAGTAC 58.491 50.000 3.96 0.00 45.15 2.73
4274 10409 1.871039 GTTCGGCTCTGTGCAAAAGTA 59.129 47.619 3.96 0.00 45.15 2.24
4275 10410 0.663153 GTTCGGCTCTGTGCAAAAGT 59.337 50.000 3.96 0.00 45.15 2.66
4276 10411 0.662619 TGTTCGGCTCTGTGCAAAAG 59.337 50.000 3.96 0.00 45.15 2.27
4277 10412 1.065401 CTTGTTCGGCTCTGTGCAAAA 59.935 47.619 3.96 0.00 45.15 2.44
4278 10413 0.662619 CTTGTTCGGCTCTGTGCAAA 59.337 50.000 3.96 0.00 45.15 3.68
4279 10414 0.463654 ACTTGTTCGGCTCTGTGCAA 60.464 50.000 3.96 0.00 45.15 4.08
4280 10415 0.463654 AACTTGTTCGGCTCTGTGCA 60.464 50.000 3.96 0.00 45.15 4.57
4281 10416 0.040958 CAACTTGTTCGGCTCTGTGC 60.041 55.000 0.00 0.00 41.94 4.57
4282 10417 0.040958 GCAACTTGTTCGGCTCTGTG 60.041 55.000 0.00 0.00 0.00 3.66
4283 10418 1.166531 GGCAACTTGTTCGGCTCTGT 61.167 55.000 0.00 0.00 0.00 3.41
4284 10419 1.165907 TGGCAACTTGTTCGGCTCTG 61.166 55.000 0.00 0.00 37.61 3.35
4285 10420 0.250901 ATGGCAACTTGTTCGGCTCT 60.251 50.000 0.00 0.00 37.61 4.09
4286 10421 0.169009 GATGGCAACTTGTTCGGCTC 59.831 55.000 0.00 0.00 37.61 4.70
4287 10422 0.250901 AGATGGCAACTTGTTCGGCT 60.251 50.000 0.00 0.00 37.61 5.52
4288 10423 0.598065 AAGATGGCAACTTGTTCGGC 59.402 50.000 9.39 0.00 37.61 5.54
4289 10424 1.879380 TCAAGATGGCAACTTGTTCGG 59.121 47.619 29.16 10.52 43.30 4.30
4290 10425 2.666619 GCTCAAGATGGCAACTTGTTCG 60.667 50.000 29.16 21.11 43.30 3.95
4291 10426 2.555757 AGCTCAAGATGGCAACTTGTTC 59.444 45.455 29.16 22.50 43.30 3.18
4292 10427 2.590821 AGCTCAAGATGGCAACTTGTT 58.409 42.857 29.16 17.26 43.30 2.83
4293 10428 2.283145 AGCTCAAGATGGCAACTTGT 57.717 45.000 29.16 13.59 43.30 3.16
4294 10429 3.655276 AAAGCTCAAGATGGCAACTTG 57.345 42.857 26.19 26.19 43.92 3.16
4295 10430 3.189287 CGTAAAGCTCAAGATGGCAACTT 59.811 43.478 3.93 3.93 37.61 2.66
4296 10431 2.744202 CGTAAAGCTCAAGATGGCAACT 59.256 45.455 0.00 0.00 37.61 3.16
4297 10432 2.484264 ACGTAAAGCTCAAGATGGCAAC 59.516 45.455 0.00 0.00 0.00 4.17
4298 10433 2.483877 CACGTAAAGCTCAAGATGGCAA 59.516 45.455 0.00 0.00 0.00 4.52
4299 10434 2.076100 CACGTAAAGCTCAAGATGGCA 58.924 47.619 0.00 0.00 0.00 4.92
4300 10435 2.076863 ACACGTAAAGCTCAAGATGGC 58.923 47.619 0.00 0.00 0.00 4.40
4301 10436 4.213270 TGAAACACGTAAAGCTCAAGATGG 59.787 41.667 0.00 0.00 0.00 3.51
4302 10437 5.342806 TGAAACACGTAAAGCTCAAGATG 57.657 39.130 0.00 0.00 0.00 2.90
4303 10438 6.560253 AATGAAACACGTAAAGCTCAAGAT 57.440 33.333 0.00 0.00 0.00 2.40
4304 10439 7.307751 CCTTAATGAAACACGTAAAGCTCAAGA 60.308 37.037 0.00 0.00 0.00 3.02
4305 10440 6.797033 CCTTAATGAAACACGTAAAGCTCAAG 59.203 38.462 0.00 0.00 0.00 3.02
4306 10441 6.483974 TCCTTAATGAAACACGTAAAGCTCAA 59.516 34.615 0.00 0.00 0.00 3.02
4307 10442 5.992829 TCCTTAATGAAACACGTAAAGCTCA 59.007 36.000 0.00 0.00 0.00 4.26
4308 10443 6.476243 TCCTTAATGAAACACGTAAAGCTC 57.524 37.500 0.00 0.00 0.00 4.09
4309 10444 6.870971 TTCCTTAATGAAACACGTAAAGCT 57.129 33.333 0.00 0.00 0.00 3.74
4310 10445 7.357303 TCTTTCCTTAATGAAACACGTAAAGC 58.643 34.615 2.19 0.00 31.28 3.51
4311 10446 9.893305 AATCTTTCCTTAATGAAACACGTAAAG 57.107 29.630 2.19 0.00 31.28 1.85
4314 10449 9.672086 CAAAATCTTTCCTTAATGAAACACGTA 57.328 29.630 2.19 0.00 31.28 3.57
4315 10450 7.651704 CCAAAATCTTTCCTTAATGAAACACGT 59.348 33.333 2.19 0.00 31.28 4.49
4316 10451 7.651704 ACCAAAATCTTTCCTTAATGAAACACG 59.348 33.333 2.19 0.00 31.28 4.49
4317 10452 8.887036 ACCAAAATCTTTCCTTAATGAAACAC 57.113 30.769 2.19 0.00 31.28 3.32
4327 10462 8.753133 GGAAGATGAATACCAAAATCTTTCCTT 58.247 33.333 0.00 0.00 39.01 3.36
4328 10463 8.118600 AGGAAGATGAATACCAAAATCTTTCCT 58.881 33.333 0.00 0.00 39.01 3.36
4329 10464 8.298729 AGGAAGATGAATACCAAAATCTTTCC 57.701 34.615 0.00 0.00 39.01 3.13
4330 10465 9.794685 GAAGGAAGATGAATACCAAAATCTTTC 57.205 33.333 0.00 0.00 39.01 2.62
4331 10466 9.312904 TGAAGGAAGATGAATACCAAAATCTTT 57.687 29.630 0.00 0.00 39.01 2.52
4332 10467 8.884124 TGAAGGAAGATGAATACCAAAATCTT 57.116 30.769 0.00 0.00 41.03 2.40
4333 10468 8.331740 TCTGAAGGAAGATGAATACCAAAATCT 58.668 33.333 0.00 0.00 0.00 2.40
4334 10469 8.511604 TCTGAAGGAAGATGAATACCAAAATC 57.488 34.615 0.00 0.00 0.00 2.17
4335 10470 9.129532 GATCTGAAGGAAGATGAATACCAAAAT 57.870 33.333 0.00 0.00 37.03 1.82
4336 10471 8.331740 AGATCTGAAGGAAGATGAATACCAAAA 58.668 33.333 0.00 0.00 37.03 2.44
4337 10472 7.865820 AGATCTGAAGGAAGATGAATACCAAA 58.134 34.615 0.00 0.00 37.03 3.28
4338 10473 7.443302 AGATCTGAAGGAAGATGAATACCAA 57.557 36.000 0.00 0.00 37.03 3.67
4339 10474 7.443302 AAGATCTGAAGGAAGATGAATACCA 57.557 36.000 0.00 0.00 37.03 3.25
4340 10475 8.744568 AAAAGATCTGAAGGAAGATGAATACC 57.255 34.615 0.00 0.00 37.03 2.73
4363 10498 3.260884 ACATCTAGAGGTCCTCGCAAAAA 59.739 43.478 13.41 0.00 35.36 1.94
4364 10499 2.832129 ACATCTAGAGGTCCTCGCAAAA 59.168 45.455 13.41 0.00 35.36 2.44
4365 10500 2.457598 ACATCTAGAGGTCCTCGCAAA 58.542 47.619 13.41 1.31 35.36 3.68
4366 10501 2.145397 ACATCTAGAGGTCCTCGCAA 57.855 50.000 13.41 3.10 35.36 4.85
4367 10502 2.145397 AACATCTAGAGGTCCTCGCA 57.855 50.000 10.99 4.76 35.36 5.10
4368 10503 2.691011 AGAAACATCTAGAGGTCCTCGC 59.309 50.000 10.99 0.00 35.36 5.03
4369 10504 3.697045 ACAGAAACATCTAGAGGTCCTCG 59.303 47.826 10.99 9.31 35.36 4.63
4370 10505 4.464597 ACACAGAAACATCTAGAGGTCCTC 59.535 45.833 10.99 11.31 0.00 3.71
4371 10506 4.221703 CACACAGAAACATCTAGAGGTCCT 59.778 45.833 10.99 8.38 0.00 3.85
4372 10507 4.021016 ACACACAGAAACATCTAGAGGTCC 60.021 45.833 10.99 6.17 0.00 4.46
4373 10508 5.140747 ACACACAGAAACATCTAGAGGTC 57.859 43.478 10.99 0.00 0.00 3.85
4374 10509 6.859112 ATACACACAGAAACATCTAGAGGT 57.141 37.500 3.73 3.73 0.00 3.85
4387 10522 9.535878 TGCACGAAAATATATAATACACACAGA 57.464 29.630 0.00 0.00 0.00 3.41
4388 10523 9.797473 CTGCACGAAAATATATAATACACACAG 57.203 33.333 0.00 0.00 0.00 3.66
4389 10524 9.535878 TCTGCACGAAAATATATAATACACACA 57.464 29.630 0.00 0.00 0.00 3.72
4399 10534 9.056005 ACATGTACATTCTGCACGAAAATATAT 57.944 29.630 5.37 0.00 34.79 0.86
4400 10535 8.432110 ACATGTACATTCTGCACGAAAATATA 57.568 30.769 5.37 0.00 34.79 0.86
4401 10536 7.320443 ACATGTACATTCTGCACGAAAATAT 57.680 32.000 5.37 0.00 34.79 1.28
4402 10537 6.735678 ACATGTACATTCTGCACGAAAATA 57.264 33.333 5.37 0.00 34.79 1.40
4403 10538 5.627499 ACATGTACATTCTGCACGAAAAT 57.373 34.783 5.37 0.00 34.79 1.82
4404 10539 6.203915 AGTTACATGTACATTCTGCACGAAAA 59.796 34.615 5.37 0.00 34.79 2.29
4405 10540 5.699001 AGTTACATGTACATTCTGCACGAAA 59.301 36.000 5.37 0.00 34.79 3.46
4406 10541 5.234752 AGTTACATGTACATTCTGCACGAA 58.765 37.500 5.37 1.85 35.78 3.85
4407 10542 4.816392 AGTTACATGTACATTCTGCACGA 58.184 39.130 5.37 0.00 0.00 4.35
4408 10543 5.530519 AAGTTACATGTACATTCTGCACG 57.469 39.130 5.37 0.00 0.00 5.34
4409 10544 7.133891 AGAAAGTTACATGTACATTCTGCAC 57.866 36.000 18.90 8.42 0.00 4.57
4410 10545 7.744087 AAGAAAGTTACATGTACATTCTGCA 57.256 32.000 19.73 0.00 0.00 4.41
4411 10546 8.936864 ACTAAGAAAGTTACATGTACATTCTGC 58.063 33.333 19.73 0.00 33.35 4.26
4471 10606 6.546034 AGGCTCTGTACAAAGTACAAAACAAT 59.454 34.615 10.77 0.00 0.00 2.71
4515 10651 6.819649 TCTTTCCTTGAAGAAACACGTAAAGA 59.180 34.615 0.00 0.00 32.95 2.52
4672 10813 4.933064 GAGATCGGGAGGCGTGCG 62.933 72.222 0.00 0.00 0.00 5.34
4673 10814 4.593864 GGAGATCGGGAGGCGTGC 62.594 72.222 0.00 0.00 0.00 5.34
4674 10815 2.356818 GAAGGAGATCGGGAGGCGTG 62.357 65.000 0.00 0.00 0.00 5.34
4675 10816 2.042843 AAGGAGATCGGGAGGCGT 60.043 61.111 0.00 0.00 0.00 5.68
4676 10817 2.731374 GAAGGAGATCGGGAGGCG 59.269 66.667 0.00 0.00 0.00 5.52
4677 10818 1.458588 AGGAAGGAGATCGGGAGGC 60.459 63.158 0.00 0.00 0.00 4.70
4678 10819 0.830023 GGAGGAAGGAGATCGGGAGG 60.830 65.000 0.00 0.00 0.00 4.30
4679 10820 0.830023 GGGAGGAAGGAGATCGGGAG 60.830 65.000 0.00 0.00 0.00 4.30
4680 10821 1.233369 GGGAGGAAGGAGATCGGGA 59.767 63.158 0.00 0.00 0.00 5.14
4681 10822 2.203771 CGGGAGGAAGGAGATCGGG 61.204 68.421 0.00 0.00 0.00 5.14
4682 10823 0.540830 ATCGGGAGGAAGGAGATCGG 60.541 60.000 0.00 0.00 0.00 4.18
4683 10824 0.885196 GATCGGGAGGAAGGAGATCG 59.115 60.000 0.00 0.00 0.00 3.69
4684 10825 2.167662 GAGATCGGGAGGAAGGAGATC 58.832 57.143 0.00 0.00 38.29 2.75
4685 10826 1.203125 GGAGATCGGGAGGAAGGAGAT 60.203 57.143 0.00 0.00 0.00 2.75
4686 10827 0.186386 GGAGATCGGGAGGAAGGAGA 59.814 60.000 0.00 0.00 0.00 3.71
4687 10828 0.187361 AGGAGATCGGGAGGAAGGAG 59.813 60.000 0.00 0.00 0.00 3.69
4688 10829 0.637195 AAGGAGATCGGGAGGAAGGA 59.363 55.000 0.00 0.00 0.00 3.36
4689 10830 1.044611 GAAGGAGATCGGGAGGAAGG 58.955 60.000 0.00 0.00 0.00 3.46
4690 10831 1.044611 GGAAGGAGATCGGGAGGAAG 58.955 60.000 0.00 0.00 0.00 3.46
4691 10832 0.637195 AGGAAGGAGATCGGGAGGAA 59.363 55.000 0.00 0.00 0.00 3.36
4692 10833 0.637195 AAGGAAGGAGATCGGGAGGA 59.363 55.000 0.00 0.00 0.00 3.71
4693 10834 1.414550 GAAAGGAAGGAGATCGGGAGG 59.585 57.143 0.00 0.00 0.00 4.30
4694 10835 1.414550 GGAAAGGAAGGAGATCGGGAG 59.585 57.143 0.00 0.00 0.00 4.30
4695 10836 1.497161 GGAAAGGAAGGAGATCGGGA 58.503 55.000 0.00 0.00 0.00 5.14
4696 10837 0.470341 GGGAAAGGAAGGAGATCGGG 59.530 60.000 0.00 0.00 0.00 5.14
4697 10838 0.105039 CGGGAAAGGAAGGAGATCGG 59.895 60.000 0.00 0.00 0.00 4.18
4698 10839 0.530870 GCGGGAAAGGAAGGAGATCG 60.531 60.000 0.00 0.00 0.00 3.69
4699 10840 0.541863 TGCGGGAAAGGAAGGAGATC 59.458 55.000 0.00 0.00 0.00 2.75
4700 10841 0.253327 GTGCGGGAAAGGAAGGAGAT 59.747 55.000 0.00 0.00 0.00 2.75
4701 10842 1.677552 GTGCGGGAAAGGAAGGAGA 59.322 57.895 0.00 0.00 0.00 3.71
4702 10843 1.741770 CGTGCGGGAAAGGAAGGAG 60.742 63.158 0.00 0.00 0.00 3.69
4703 10844 2.345991 CGTGCGGGAAAGGAAGGA 59.654 61.111 0.00 0.00 0.00 3.36
4704 10845 2.032071 ACGTGCGGGAAAGGAAGG 59.968 61.111 0.00 0.00 0.00 3.46
4705 10846 2.033194 GGACGTGCGGGAAAGGAAG 61.033 63.158 0.00 0.00 0.00 3.46
4706 10847 2.031465 GGACGTGCGGGAAAGGAA 59.969 61.111 0.00 0.00 0.00 3.36
4707 10848 2.920912 AGGACGTGCGGGAAAGGA 60.921 61.111 0.00 0.00 0.00 3.36
4708 10849 2.434359 GAGGACGTGCGGGAAAGG 60.434 66.667 0.00 0.00 0.00 3.11
4709 10850 1.446272 GAGAGGACGTGCGGGAAAG 60.446 63.158 0.00 0.00 0.00 2.62
4710 10851 2.654877 GAGAGGACGTGCGGGAAA 59.345 61.111 0.00 0.00 0.00 3.13
4711 10852 3.744719 CGAGAGGACGTGCGGGAA 61.745 66.667 0.00 0.00 0.00 3.97
4712 10853 3.989838 ATCGAGAGGACGTGCGGGA 62.990 63.158 0.00 0.00 34.70 5.14
4713 10854 2.558554 AAATCGAGAGGACGTGCGGG 62.559 60.000 0.00 0.00 34.70 6.13
4714 10855 1.140407 GAAATCGAGAGGACGTGCGG 61.140 60.000 0.00 0.00 34.70 5.69
4715 10856 0.179161 AGAAATCGAGAGGACGTGCG 60.179 55.000 0.00 0.00 34.70 5.34
4716 10857 1.997669 AAGAAATCGAGAGGACGTGC 58.002 50.000 0.00 0.00 34.70 5.34
4717 10858 2.924290 GGAAAGAAATCGAGAGGACGTG 59.076 50.000 0.00 0.00 34.70 4.49
4718 10859 2.826725 AGGAAAGAAATCGAGAGGACGT 59.173 45.455 0.00 0.00 34.70 4.34
4719 10860 3.512033 AGGAAAGAAATCGAGAGGACG 57.488 47.619 0.00 0.00 0.00 4.79
4720 10861 4.632251 GGAAAGGAAAGAAATCGAGAGGAC 59.368 45.833 0.00 0.00 0.00 3.85
4721 10862 4.323562 GGGAAAGGAAAGAAATCGAGAGGA 60.324 45.833 0.00 0.00 0.00 3.71
4722 10863 3.942115 GGGAAAGGAAAGAAATCGAGAGG 59.058 47.826 0.00 0.00 0.00 3.69
4723 10864 3.619038 CGGGAAAGGAAAGAAATCGAGAG 59.381 47.826 0.00 0.00 0.00 3.20
4724 10865 3.596214 CGGGAAAGGAAAGAAATCGAGA 58.404 45.455 0.00 0.00 0.00 4.04
4725 10866 2.096013 GCGGGAAAGGAAAGAAATCGAG 59.904 50.000 0.00 0.00 0.00 4.04
4726 10867 2.081462 GCGGGAAAGGAAAGAAATCGA 58.919 47.619 0.00 0.00 0.00 3.59
4727 10868 1.810151 TGCGGGAAAGGAAAGAAATCG 59.190 47.619 0.00 0.00 0.00 3.34
4728 10869 2.414161 CGTGCGGGAAAGGAAAGAAATC 60.414 50.000 0.00 0.00 0.00 2.17
4729 10870 1.539827 CGTGCGGGAAAGGAAAGAAAT 59.460 47.619 0.00 0.00 0.00 2.17
4730 10871 0.948678 CGTGCGGGAAAGGAAAGAAA 59.051 50.000 0.00 0.00 0.00 2.52
4731 10872 1.512156 GCGTGCGGGAAAGGAAAGAA 61.512 55.000 0.00 0.00 0.00 2.52
4732 10873 1.964373 GCGTGCGGGAAAGGAAAGA 60.964 57.895 0.00 0.00 0.00 2.52
4998 11141 9.467258 CATGAACATGTCAAAAACAGTATTTCT 57.533 29.630 0.00 0.00 42.37 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.