AutoCloner

Multiple sequence alignment - TraesCS6B01G153300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G153300	chr6B	100.000	5171	0	0	1	5171	157028403	157023233	0.000000e+00	9550.0
1	TraesCS6B01G153300	chr6B	87.180	3791	433	25	507	4260	156741503	156737729	0.000000e+00	4259.0
2	TraesCS6B01G153300	chr6B	81.502	3595	587	62	707	4260	157109672	157106115	0.000000e+00	2883.0
3	TraesCS6B01G153300	chr6B	82.522	3267	534	29	981	4226	156550964	156547714	0.000000e+00	2835.0
4	TraesCS6B01G153300	chr6B	81.339	3242	554	31	919	4136	156528989	156525775	0.000000e+00	2588.0
5	TraesCS6B01G153300	chr6B	81.818	165	20	5	267	421	156655188	156655024	4.200000e-26	130.0
6	TraesCS6B01G153300	chr6B	82.278	158	11	8	280	429	157131585	157131437	2.530000e-23	121.0
7	TraesCS6B01G153300	chr6B	80.357	168	20	9	256	417	156533984	156533824	1.180000e-21	115.0
8	TraesCS6B01G153300	chr6D	96.924	4421	101	12	7	4419	82140110	82135717	0.000000e+00	7378.0
9	TraesCS6B01G153300	chr6D	87.609	3793	424	27	507	4260	81935898	81932113	0.000000e+00	4359.0
10	TraesCS6B01G153300	chr6D	81.520	3409	581	41	877	4260	82204098	82200714	0.000000e+00	2760.0
11	TraesCS6B01G153300	chr6D	83.732	2090	322	15	935	3012	83020905	83018822	0.000000e+00	1960.0
12	TraesCS6B01G153300	chr6D	93.826	745	29	11	4433	5171	82135188	82134455	0.000000e+00	1105.0
13	TraesCS6B01G153300	chr6D	80.982	163	20	6	271	422	81926530	81926368	9.100000e-23	119.0
14	TraesCS6B01G153300	chr6D	82.550	149	9	8	289	429	82210461	82210322	1.180000e-21	115.0
15	TraesCS6B01G153300	chr6D	78.613	173	19	12	256	417	81764736	81764571	1.180000e-16	99.0
16	TraesCS6B01G153300	chr6A	91.098	3943	318	14	341	4267	98814263	98810338	0.000000e+00	5306.0
17	TraesCS6B01G153300	chr6A	86.976	3793	446	28	507	4260	98324367	98320584	0.000000e+00	4224.0
18	TraesCS6B01G153300	chr6A	81.199	3585	622	40	707	4260	98888391	98884828	0.000000e+00	2839.0
19	TraesCS6B01G153300	chr6A	85.342	2497	334	24	1792	4267	98916425	98913940	0.000000e+00	2555.0
20	TraesCS6B01G153300	chr6A	91.240	742	40	12	4436	5171	98809816	98809094	0.000000e+00	987.0
21	TraesCS6B01G153300	chr6A	88.356	292	20	3	51	342	98814576	98814299	6.410000e-89	339.0
22	TraesCS6B01G153300	chr6A	82.278	158	11	9	280	429	98917893	98917745	2.530000e-23	121.0
23	TraesCS6B01G153300	chr6A	93.443	61	4	0	7	67	98814657	98814597	1.980000e-14	91.6
24	TraesCS6B01G153300	chr6A	77.246	167	21	11	262	417	98257194	98257034	1.190000e-11	82.4
25	TraesCS6B01G153300	chr7D	81.623	2514	379	54	548	3012	560999783	561002262	0.000000e+00	2006.0
26	TraesCS6B01G153300	chr7A	82.503	2269	358	30	774	3012	645087631	645089890	0.000000e+00	1954.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G153300	chr6B	157023233	157028403	5170	True	9550.0	9550	100.00000	1	5171	1	chr6B.!!$R6	5170
1	TraesCS6B01G153300	chr6B	156737729	156741503	3774	True	4259.0	4259	87.18000	507	4260	1	chr6B.!!$R5	3753
2	TraesCS6B01G153300	chr6B	157106115	157109672	3557	True	2883.0	2883	81.50200	707	4260	1	chr6B.!!$R7	3553
3	TraesCS6B01G153300	chr6B	156547714	156550964	3250	True	2835.0	2835	82.52200	981	4226	1	chr6B.!!$R3	3245
4	TraesCS6B01G153300	chr6B	156525775	156528989	3214	True	2588.0	2588	81.33900	919	4136	1	chr6B.!!$R1	3217
5	TraesCS6B01G153300	chr6D	81932113	81935898	3785	True	4359.0	4359	87.60900	507	4260	1	chr6D.!!$R3	3753
6	TraesCS6B01G153300	chr6D	82134455	82140110	5655	True	4241.5	7378	95.37500	7	5171	2	chr6D.!!$R7	5164
7	TraesCS6B01G153300	chr6D	82200714	82204098	3384	True	2760.0	2760	81.52000	877	4260	1	chr6D.!!$R4	3383
8	TraesCS6B01G153300	chr6D	83018822	83020905	2083	True	1960.0	1960	83.73200	935	3012	1	chr6D.!!$R6	2077
9	TraesCS6B01G153300	chr6A	98320584	98324367	3783	True	4224.0	4224	86.97600	507	4260	1	chr6A.!!$R2	3753
10	TraesCS6B01G153300	chr6A	98884828	98888391	3563	True	2839.0	2839	81.19900	707	4260	1	chr6A.!!$R3	3553
11	TraesCS6B01G153300	chr6A	98809094	98814657	5563	True	1680.9	5306	91.03425	7	5171	4	chr6A.!!$R4	5164
12	TraesCS6B01G153300	chr6A	98913940	98917893	3953	True	1338.0	2555	83.81000	280	4267	2	chr6A.!!$R5	3987
13	TraesCS6B01G153300	chr7D	560999783	561002262	2479	False	2006.0	2006	81.62300	548	3012	1	chr7D.!!$F1	2464
14	TraesCS6B01G153300	chr7A	645087631	645089890	2259	False	1954.0	1954	82.50300	774	3012	1	chr7A.!!$F1	2238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
203	244	0.253044	GATCAACCAGCCTGCCACTA	59.747	55.000	0.00	0.00	0.00	2.74	F
276	317	0.392998	AATAAGTGCGCCAGTGGAGG	60.393	55.000	15.20	4.64	0.00	4.30	F
1693	1958	1.346062	TTGCTCCAAGCTGAGAGAGT	58.654	50.000	15.64	0.00	42.97	3.24	F
1716	1981	2.025321	CAGGGCTGGGTATAACAACCTT	60.025	50.000	0.00	0.00	39.65	3.50	F
2954	3219	4.953579	TGGAGGCCAGTTTAATACATTTCC	59.046	41.667	5.01	0.00	0.00	3.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1423	1676	1.490490	TGGCAGTTCTTGGAGTGTTCT	59.510	47.619	0.00	3.01	R
1926	2191	1.985159	AGCTCCCCTGACATGTTGTTA	59.015	47.619	0.00	2.41	R
3252	3517	0.469144	TGTTTTCTTCACCCTGGCCC	60.469	55.000	0.00	5.80	R
3300	3565	5.379732	TTTCCTTGTCAAAGTTGTTCGTT	57.620	34.783	0.00	3.85	R
4578	5432	0.546267	ATGTGCCTCCTGGACTCTGT	60.546	55.000	34.57	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	138	3.667360	ACGTTCCGCTACCAACTTAAAT	58.333	40.909	0.00	0.00	0.00	1.40
100	139	4.819769	ACGTTCCGCTACCAACTTAAATA	58.180	39.130	0.00	0.00	0.00	1.40
101	140	5.422145	ACGTTCCGCTACCAACTTAAATAT	58.578	37.500	0.00	0.00	0.00	1.28
105	144	7.751793	CGTTCCGCTACCAACTTAAATATTTTT	59.248	33.333	5.91	0.00	0.00	1.94
162	203	3.054434	TGTCCCTAAAGACCATGACCATG	60.054	47.826	0.00	3.11	35.83	3.66
203	244	0.253044	GATCAACCAGCCTGCCACTA	59.747	55.000	0.00	0.00	0.00	2.74
233	274	4.768583	TCACACGTTACCCAGTTTACTTT	58.231	39.130	0.00	0.00	0.00	2.66
276	317	0.392998	AATAAGTGCGCCAGTGGAGG	60.393	55.000	15.20	4.64	0.00	4.30
335	380	2.030717	ACGAAGCTCGCTCGAATGATAT	60.031	45.455	12.99	0.00	45.12	1.63
460	637	2.600792	CGCAAGCGCCTTTCAGAATATC	60.601	50.000	2.29	0.00	33.11	1.63
503	680	5.729510	TGTTCTTTTCCTTTCAAAACAGGG	58.270	37.500	0.00	0.00	0.00	4.45
505	682	3.772025	TCTTTTCCTTTCAAAACAGGGCA	59.228	39.130	0.00	0.00	0.00	5.36
563	740	7.203218	AGAAGTAAATTTTCTTGTCAAGTGCC	58.797	34.615	14.00	0.00	30.98	5.01
671	869	3.512329	TCAAGGACGGCTACACAATCTAA	59.488	43.478	0.00	0.00	0.00	2.10
953	1192	3.065786	CCACCATTGATGCATACAGTCAC	59.934	47.826	0.00	0.00	0.00	3.67
1423	1676	2.809696	GTTAGCTTTAACCGGCTCAACA	59.190	45.455	0.00	0.00	39.65	3.33
1437	1693	3.206150	GCTCAACAGAACACTCCAAGAA	58.794	45.455	0.00	0.00	0.00	2.52
1444	1700	1.604278	GAACACTCCAAGAACTGCCAC	59.396	52.381	0.00	0.00	0.00	5.01
1693	1958	1.346062	TTGCTCCAAGCTGAGAGAGT	58.654	50.000	15.64	0.00	42.97	3.24
1716	1981	2.025321	CAGGGCTGGGTATAACAACCTT	60.025	50.000	0.00	0.00	39.65	3.50
1876	2141	5.127682	AGAAACAACTTCAGTGGCAAGATTT	59.872	36.000	0.00	0.00	36.40	2.17
2588	2853	5.807520	TGCTAAAATCAACTGAAAACGCAAA	59.192	32.000	0.00	0.00	0.00	3.68
2954	3219	4.953579	TGGAGGCCAGTTTAATACATTTCC	59.046	41.667	5.01	0.00	0.00	3.13
3189	3454	5.855740	ATAGAAGGGAAAGTAACGGAGAG	57.144	43.478	0.00	0.00	0.00	3.20
3300	3565	7.040494	TCAAATTCACTGACATTTTGAAAGCA	58.960	30.769	7.86	0.00	34.39	3.91
4028	4299	4.645588	ACTTAGAGGAACAGGATACGAAGG	59.354	45.833	0.00	0.00	46.39	3.46
4294	4623	2.158871	ACGAGAAGTTGTACTTTGGGCA	60.159	45.455	0.00	0.00	38.80	5.36
4327	4656	7.715249	TGTACCAGAGGCAATATTCTAATCAAC	59.285	37.037	0.00	0.00	0.00	3.18
4336	4665	7.267857	GCAATATTCTAATCAACCCAAAGCTT	58.732	34.615	0.00	0.00	0.00	3.74
4366	4695	9.740239	ATGTTTTGCATTCATATCTGTCATTAC	57.260	29.630	0.00	0.00	33.14	1.89
4368	4697	9.229784	GTTTTGCATTCATATCTGTCATTACTG	57.770	33.333	0.00	0.00	0.00	2.74
4387	4716	1.425066	TGGTGTTCAGCCAGGAGATTT	59.575	47.619	0.00	0.00	0.00	2.17
4390	4719	3.149196	GTGTTCAGCCAGGAGATTTTCA	58.851	45.455	0.00	0.00	0.00	2.69
4421	4750	3.756933	TTTTAGTTGTACTCGGCCAGT	57.243	42.857	2.24	8.36	39.41	4.00
4422	4751	3.308438	TTTAGTTGTACTCGGCCAGTC	57.692	47.619	2.24	1.38	36.43	3.51
4423	4752	0.806868	TAGTTGTACTCGGCCAGTCG	59.193	55.000	2.24	0.00	36.43	4.18
4424	4753	1.445582	GTTGTACTCGGCCAGTCGG	60.446	63.158	2.24	0.00	36.43	4.79
4505	5358	2.363683	GAGGAAGCCAACTCCAGATTG	58.636	52.381	0.00	0.00	0.00	2.67
4544	5397	1.971167	GGCAAATCCAGTCGGCACA	60.971	57.895	0.00	0.00	34.01	4.57
4578	5432	7.333423	CGAAATTCATGTCCAAGAGTACCTTTA	59.667	37.037	0.00	0.00	31.42	1.85
4635	5489	3.976169	ACAATGCCATACACAACAACAC	58.024	40.909	0.00	0.00	0.00	3.32
4751	5605	2.320587	CCTTGACAGCGAGCACCAC	61.321	63.158	0.00	0.00	0.00	4.16
4770	5624	4.646877	TCGGCCGGGTCCCAAAAC	62.647	66.667	27.83	0.00	0.00	2.43
4811	5665	7.060403	GTCGCCATTTTAAGCTATACGTACTAG	59.940	40.741	0.00	2.75	0.00	2.57
4812	5666	6.860023	CGCCATTTTAAGCTATACGTACTAGT	59.140	38.462	0.00	0.00	0.00	2.57
4813	5667	8.017373	CGCCATTTTAAGCTATACGTACTAGTA	58.983	37.037	0.00	0.00	0.00	1.82
4885	5739	9.555411	TCTTGAAGTATTATACCCCATATGCTA	57.445	33.333	0.00	0.00	0.00	3.49
4986	5841	6.741992	TTTAAGTGAGATGTTATGTGCTGG	57.258	37.500	0.00	0.00	0.00	4.85
4987	5842	3.988976	AGTGAGATGTTATGTGCTGGT	57.011	42.857	0.00	0.00	0.00	4.00
4988	5843	4.292186	AGTGAGATGTTATGTGCTGGTT	57.708	40.909	0.00	0.00	0.00	3.67
4989	5844	4.256920	AGTGAGATGTTATGTGCTGGTTC	58.743	43.478	0.00	0.00	0.00	3.62
5025	5880	7.309438	GCTTTGGATCAGACAATTTTAGGAACT	60.309	37.037	0.00	0.00	46.37	3.01
5038	5893	1.671379	GGAACTGCCGGAGTTGGAC	60.671	63.158	19.69	8.83	45.48	4.02
5044	5899	3.110178	CCGGAGTTGGACGCGAAC	61.110	66.667	15.93	7.16	0.00	3.95
5054	5909	3.853831	TGGACGCGAACTACTGAATTA	57.146	42.857	15.93	0.00	0.00	1.40
5055	5910	4.380841	TGGACGCGAACTACTGAATTAT	57.619	40.909	15.93	0.00	0.00	1.28
5081	5937	5.576447	ACAGACAAGAAAATGTTCGGTTT	57.424	34.783	0.00	0.00	38.90	3.27
5098	5954	4.335874	TCGGTTTGTCCAAAATTCGAAAGA	59.664	37.500	0.00	0.00	35.07	2.52
5159	6015	4.083749	CGACACTATCAGAATACGAGAGGG	60.084	50.000	0.00	0.00	31.33	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.753516	TTATGTGGACATCAGACGGATT	57.246	40.909	0.00	0.00	37.76	3.01
1	2	4.635223	CATTATGTGGACATCAGACGGAT	58.365	43.478	0.00	0.00	37.76	4.18
116	157	9.959721	ACAGAACCATGTGTTTATATCTTACTT	57.040	29.630	0.00	0.00	37.29	2.24
117	158	9.601217	GACAGAACCATGTGTTTATATCTTACT	57.399	33.333	0.00	0.00	37.29	2.24
118	159	8.827677	GGACAGAACCATGTGTTTATATCTTAC	58.172	37.037	0.00	0.00	37.29	2.34
119	160	7.990886	GGGACAGAACCATGTGTTTATATCTTA	59.009	37.037	0.00	0.00	37.29	2.10
120	161	6.828785	GGGACAGAACCATGTGTTTATATCTT	59.171	38.462	0.00	0.00	37.29	2.40
121	162	6.158695	AGGGACAGAACCATGTGTTTATATCT	59.841	38.462	0.00	0.00	37.29	1.98
122	163	6.357367	AGGGACAGAACCATGTGTTTATATC	58.643	40.000	0.00	0.00	37.29	1.63
123	164	6.327386	AGGGACAGAACCATGTGTTTATAT	57.673	37.500	0.00	0.00	37.29	0.86
124	165	5.772393	AGGGACAGAACCATGTGTTTATA	57.228	39.130	0.00	0.00	37.29	0.98
125	166	4.657814	AGGGACAGAACCATGTGTTTAT	57.342	40.909	0.00	0.00	37.29	1.40
126	167	5.570205	TTAGGGACAGAACCATGTGTTTA	57.430	39.130	0.00	0.00	37.29	2.01
127	168	4.447138	TTAGGGACAGAACCATGTGTTT	57.553	40.909	0.00	0.00	37.29	2.83
128	169	4.104102	TCTTTAGGGACAGAACCATGTGTT	59.896	41.667	0.00	0.00	40.81	3.32
129	170	3.650942	TCTTTAGGGACAGAACCATGTGT	59.349	43.478	0.00	0.00	35.42	3.72
130	171	4.003648	GTCTTTAGGGACAGAACCATGTG	58.996	47.826	0.00	0.00	36.35	3.21
162	203	2.976903	GGCTCGGATCATGCTGGC	60.977	66.667	0.00	0.00	0.00	4.85
203	244	2.291365	GGGTAACGTGTGAGTTTTGGT	58.709	47.619	0.00	0.00	35.70	3.67
276	317	1.673920	TGTTGTTTTTCGTCCTCCTGC	59.326	47.619	0.00	0.00	0.00	4.85
283	324	2.912345	ACGTTTGCTGTTGTTTTTCGTC	59.088	40.909	0.00	0.00	0.00	4.20
460	637	2.095263	CAGTTGGGTAACGATTTGCAGG	60.095	50.000	0.00	0.00	41.71	4.85
503	680	3.392882	CCTTTTTGTGAACAGGGAATGC	58.607	45.455	0.00	0.00	30.53	3.56
505	682	3.037549	TGCCTTTTTGTGAACAGGGAAT	58.962	40.909	0.00	0.00	34.03	3.01
553	730	3.113514	TTCCCGCTGGCACTTGACA	62.114	57.895	0.00	0.00	0.00	3.58
563	740	0.820871	ACTCTAAGCTCTTCCCGCTG	59.179	55.000	0.00	0.00	37.87	5.18
953	1192	1.400242	GCAAGAGCTAAAGTTGTGCCG	60.400	52.381	0.00	0.00	37.91	5.69
1125	1375	4.394712	AACTGGAGAAGGGCGCCG	62.395	66.667	22.54	6.21	39.67	6.46
1423	1676	1.490490	TGGCAGTTCTTGGAGTGTTCT	59.510	47.619	0.00	0.00	0.00	3.01
1437	1693	4.265056	GGGGTTGACGGTGGCAGT	62.265	66.667	0.00	0.00	0.00	4.40
1693	1958	2.025699	GGTTGTTATACCCAGCCCTGAA	60.026	50.000	0.00	0.00	31.71	3.02
1716	1981	3.184382	TCATCTGGGAGTGTTCCACTA	57.816	47.619	0.00	0.00	45.44	2.74
1876	2141	6.019108	TCTTGAGCTGGCCTATATAATCTGA	58.981	40.000	3.32	0.00	0.00	3.27
1926	2191	1.985159	AGCTCCCCTGACATGTTGTTA	59.015	47.619	0.00	0.00	0.00	2.41
2588	2853	3.071967	AGATCCTTGGGTCCAGATGAT	57.928	47.619	0.00	0.00	0.00	2.45
2954	3219	6.318648	TGGATTCCCATCAAAACTAGAATTCG	59.681	38.462	0.00	0.00	37.58	3.34
2982	3247	3.413221	AGTGAGCATAGAGCCACACAGT	61.413	50.000	14.01	0.00	46.34	3.55
3252	3517	0.469144	TGTTTTCTTCACCCTGGCCC	60.469	55.000	0.00	0.00	0.00	5.80
3300	3565	5.379732	TTTCCTTGTCAAAGTTGTTCGTT	57.620	34.783	0.00	0.00	0.00	3.85
4028	4299	2.297033	TCAAGAACCTTCAGCATTTGCC	59.703	45.455	0.00	0.00	43.38	4.52
4202	4491	7.387948	AGAAAGTTAAAAGTACATCATGCTCGT	59.612	33.333	0.00	0.00	0.00	4.18
4254	4551	9.430838	CTTCTCGTTGATTGCTCTAAAATTATG	57.569	33.333	0.00	0.00	0.00	1.90
4289	4618	3.410541	GGTACATGACCCTGCCCA	58.589	61.111	0.00	0.00	43.25	5.36
4327	4656	2.769893	CAAAACATGGGAAGCTTTGGG	58.230	47.619	0.00	0.00	0.00	4.12
4336	4665	5.657745	ACAGATATGAATGCAAAACATGGGA	59.342	36.000	11.89	0.00	39.60	4.37
4368	4697	2.206576	AAATCTCCTGGCTGAACACC	57.793	50.000	0.00	0.00	0.00	4.16
4419	4748	5.739358	GCATACAAAGATTAGTAGGCCGACT	60.739	44.000	22.79	22.79	40.86	4.18
4420	4749	4.448060	GCATACAAAGATTAGTAGGCCGAC	59.552	45.833	8.12	8.12	40.86	4.79
4421	4750	4.100344	TGCATACAAAGATTAGTAGGCCGA	59.900	41.667	0.00	0.00	44.67	5.54
4422	4751	4.211374	GTGCATACAAAGATTAGTAGGCCG	59.789	45.833	0.00	0.00	44.67	6.13
4423	4752	5.368989	AGTGCATACAAAGATTAGTAGGCC	58.631	41.667	0.00	0.00	44.67	5.19
4424	4753	7.711339	AGTTAGTGCATACAAAGATTAGTAGGC	59.289	37.037	0.00	0.00	45.27	3.93
4505	5358	6.791303	TGCCTTTCGGATTAAATATGTTGAC	58.209	36.000	0.00	0.00	0.00	3.18
4544	5397	8.335532	TCTTGGACATGAATTTCGAATTAACT	57.664	30.769	0.00	0.00	0.00	2.24
4578	5432	0.546267	ATGTGCCTCCTGGACTCTGT	60.546	55.000	0.00	0.00	34.57	3.41
4694	5548	1.956477	GTCCATTGGTATCCATGGCAC	59.044	52.381	6.96	7.34	34.49	5.01
4756	5610	2.082629	CTGTTGTTTTGGGACCCGGC	62.083	60.000	5.91	0.00	0.00	6.13
4770	5624	1.798813	GGCGACCTGTTAAGACTGTTG	59.201	52.381	0.00	0.00	0.00	3.33
4885	5739	0.877071	CCGCATGCTTGTCAGACTTT	59.123	50.000	17.13	0.00	0.00	2.66
4890	5744	0.731514	CTTTGCCGCATGCTTGTCAG	60.732	55.000	17.13	2.41	42.00	3.51
5038	5893	7.320797	GTCTGTAGTATAATTCAGTAGTTCGCG	59.679	40.741	0.00	0.00	0.00	5.87
5054	5909	7.159372	ACCGAACATTTTCTTGTCTGTAGTAT	58.841	34.615	0.00	0.00	0.00	2.12
5055	5910	6.518493	ACCGAACATTTTCTTGTCTGTAGTA	58.482	36.000	0.00	0.00	0.00	1.82
5081	5937	7.270757	TCTCATTTCTTTCGAATTTTGGACA	57.729	32.000	0.00	0.00	0.00	4.02
5106	5962	8.877195	ACATGGTACCCGTATTATTAAATCTCT	58.123	33.333	10.07	0.00	0.00	3.10
5123	5979	6.016527	TCTGATAGTGTCGAATACATGGTACC	60.017	42.308	4.43	4.43	41.10	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.