Multiple sequence alignment - TraesCS6B01G152900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G152900 chr6B 100.000 5150 0 0 1 5150 156655819 156650670 0.000000e+00 9511.0
1 TraesCS6B01G152900 chr6B 85.739 3408 442 35 893 4277 157489397 157486011 0.000000e+00 3561.0
2 TraesCS6B01G152900 chr6B 83.606 3245 493 34 902 4131 156529000 156525780 0.000000e+00 3009.0
3 TraesCS6B01G152900 chr6B 82.764 3336 530 33 974 4277 156550968 156547646 0.000000e+00 2933.0
4 TraesCS6B01G152900 chr6B 82.297 3378 545 38 912 4264 157027486 157024137 0.000000e+00 2876.0
5 TraesCS6B01G152900 chr6B 81.305 3418 573 44 893 4277 157109483 157106099 0.000000e+00 2712.0
6 TraesCS6B01G152900 chr6B 99.286 420 3 0 1 420 363609978 363610397 0.000000e+00 760.0
7 TraesCS6B01G152900 chr6B 99.286 420 3 0 1 420 370413079 370412660 0.000000e+00 760.0
8 TraesCS6B01G152900 chr6B 95.935 123 5 0 4272 4394 130967932 130967810 3.140000e-47 200.0
9 TraesCS6B01G152900 chr6B 97.391 115 3 0 4266 4380 143439796 143439910 4.070000e-46 196.0
10 TraesCS6B01G152900 chr6B 81.057 227 27 9 645 868 157131585 157131372 3.190000e-37 167.0
11 TraesCS6B01G152900 chr6B 81.818 165 20 5 632 796 157028137 157027983 4.180000e-26 130.0
12 TraesCS6B01G152900 chr6B 83.721 129 20 1 748 876 157489981 157489854 2.520000e-23 121.0
13 TraesCS6B01G152900 chr6B 80.909 110 13 5 5041 5150 157484843 157484742 4.270000e-11 80.5
14 TraesCS6B01G152900 chr6B 81.443 97 11 5 5054 5150 156546698 156546609 7.150000e-09 73.1
15 TraesCS6B01G152900 chr6B 92.000 50 1 2 5097 5146 157023080 157023034 3.330000e-07 67.6
16 TraesCS6B01G152900 chr6D 96.494 3765 116 5 515 4277 81926637 81922887 0.000000e+00 6207.0
17 TraesCS6B01G152900 chr6D 85.639 3412 441 34 893 4277 82237751 82234362 0.000000e+00 3541.0
18 TraesCS6B01G152900 chr6D 83.354 3268 500 39 886 4131 81759811 81756566 0.000000e+00 2981.0
19 TraesCS6B01G152900 chr6D 83.395 3234 510 26 1056 4277 81773806 81770588 0.000000e+00 2972.0
20 TraesCS6B01G152900 chr6D 91.173 793 35 17 4378 5150 81922891 81922114 0.000000e+00 1044.0
21 TraesCS6B01G152900 chr6D 84.682 581 39 14 4595 5150 81917118 81916563 7.590000e-148 534.0
22 TraesCS6B01G152900 chr6D 83.230 161 17 3 636 796 82139860 82139710 6.950000e-29 139.0
23 TraesCS6B01G152900 chr6D 84.000 150 16 3 726 868 82210401 82210253 2.500000e-28 137.0
24 TraesCS6B01G152900 chr6D 96.825 63 2 0 418 480 81926707 81926645 7.050000e-19 106.0
25 TraesCS6B01G152900 chr6D 84.884 86 6 4 5069 5150 82200131 82200049 4.270000e-11 80.5
26 TraesCS6B01G152900 chr6A 92.804 3877 245 18 418 4278 98316533 98312675 0.000000e+00 5583.0
27 TraesCS6B01G152900 chr6A 82.977 3319 522 29 974 4272 98309995 98306700 0.000000e+00 2959.0
28 TraesCS6B01G152900 chr6A 83.214 280 9 9 4891 5150 98312287 98312026 6.710000e-54 222.0
29 TraesCS6B01G152900 chr6A 79.130 230 28 12 645 867 98917893 98917677 1.930000e-29 141.0
30 TraesCS6B01G152900 chr6A 83.505 97 9 6 5054 5150 98305729 98305640 3.300000e-12 84.2
31 TraesCS6B01G152900 chr6A 80.583 103 12 5 5045 5146 98808990 98808895 7.150000e-09 73.1
32 TraesCS6B01G152900 chr5B 99.286 420 3 0 1 420 321644882 321645301 0.000000e+00 760.0
33 TraesCS6B01G152900 chr5B 94.444 126 6 1 4255 4380 148990098 148989974 5.260000e-45 193.0
34 TraesCS6B01G152900 chr5B 86.598 97 9 4 4509 4603 706306878 706306972 2.540000e-18 104.0
35 TraesCS6B01G152900 chr5B 87.500 88 8 3 4510 4596 706306964 706306879 1.180000e-16 99.0
36 TraesCS6B01G152900 chr3A 99.052 422 4 0 1 422 530123562 530123983 0.000000e+00 758.0
37 TraesCS6B01G152900 chr3A 97.391 115 3 0 4266 4380 38393718 38393604 4.070000e-46 196.0
38 TraesCS6B01G152900 chr2A 99.052 422 4 0 1 422 362521511 362521932 0.000000e+00 758.0
39 TraesCS6B01G152900 chrUn 99.048 420 4 0 1 420 355404597 355404178 0.000000e+00 754.0
40 TraesCS6B01G152900 chr4B 99.048 420 4 0 1 420 466743282 466742863 0.000000e+00 754.0
41 TraesCS6B01G152900 chr4B 99.048 420 4 0 1 420 466753350 466752931 0.000000e+00 754.0
42 TraesCS6B01G152900 chr4B 87.234 94 10 2 4509 4602 563210610 563210519 7.050000e-19 106.0
43 TraesCS6B01G152900 chr4A 98.818 423 5 0 1 423 621874788 621874366 0.000000e+00 754.0
44 TraesCS6B01G152900 chr2B 99.115 113 1 0 4268 4380 691451320 691451432 2.430000e-48 204.0
45 TraesCS6B01G152900 chr2B 95.833 120 4 1 4274 4392 475485649 475485530 5.260000e-45 193.0
46 TraesCS6B01G152900 chr1B 99.099 111 1 0 4271 4381 582724248 582724138 3.140000e-47 200.0
47 TraesCS6B01G152900 chr1B 86.598 97 9 4 4509 4604 493871879 493871972 2.540000e-18 104.0
48 TraesCS6B01G152900 chr7D 96.610 118 3 1 4264 4380 566209318 566209201 1.460000e-45 195.0
49 TraesCS6B01G152900 chr7D 87.234 94 9 3 4512 4604 567735196 567735105 2.540000e-18 104.0
50 TraesCS6B01G152900 chr7D 85.000 100 8 7 4506 4603 618868838 618868744 1.530000e-15 95.3
51 TraesCS6B01G152900 chr5D 95.798 119 5 0 4266 4384 193234619 193234737 5.260000e-45 193.0
52 TraesCS6B01G152900 chr5D 82.692 104 14 4 4506 4608 302333581 302333681 7.100000e-14 89.8
53 TraesCS6B01G152900 chr7B 86.598 97 12 1 4509 4604 622269411 622269315 7.050000e-19 106.0
54 TraesCS6B01G152900 chr7B 86.000 100 7 7 4506 4603 713284367 713284273 3.280000e-17 100.0
55 TraesCS6B01G152900 chr7B 85.870 92 12 1 4505 4596 138742433 138742343 4.240000e-16 97.1
56 TraesCS6B01G152900 chr4D 87.234 94 11 1 4509 4602 450203792 450203700 7.050000e-19 106.0
57 TraesCS6B01G152900 chr7A 86.598 97 10 3 4509 4604 654797034 654796940 2.540000e-18 104.0
58 TraesCS6B01G152900 chr7A 85.417 96 12 2 4502 4597 614771245 614771338 1.180000e-16 99.0
59 TraesCS6B01G152900 chr7A 84.375 96 13 2 4502 4597 614841198 614841105 5.490000e-15 93.5
60 TraesCS6B01G152900 chr3B 88.235 85 7 3 4498 4581 644507441 644507523 1.180000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G152900 chr6B 156650670 156655819 5149 True 9511.000000 9511 100.000000 1 5150 1 chr6B.!!$R3 5149
1 TraesCS6B01G152900 chr6B 156525780 156529000 3220 True 3009.000000 3009 83.606000 902 4131 1 chr6B.!!$R2 3229
2 TraesCS6B01G152900 chr6B 157106099 157109483 3384 True 2712.000000 2712 81.305000 893 4277 1 chr6B.!!$R4 3384
3 TraesCS6B01G152900 chr6B 156546609 156550968 4359 True 1503.050000 2933 82.103500 974 5150 2 chr6B.!!$R7 4176
4 TraesCS6B01G152900 chr6B 157484742 157489981 5239 True 1254.166667 3561 83.456333 748 5150 3 chr6B.!!$R9 4402
5 TraesCS6B01G152900 chr6B 157023034 157028137 5103 True 1024.533333 2876 85.371667 632 5146 3 chr6B.!!$R8 4514
6 TraesCS6B01G152900 chr6D 82234362 82237751 3389 True 3541.000000 3541 85.639000 893 4277 1 chr6D.!!$R7 3384
7 TraesCS6B01G152900 chr6D 81756566 81759811 3245 True 2981.000000 2981 83.354000 886 4131 1 chr6D.!!$R1 3245
8 TraesCS6B01G152900 chr6D 81770588 81773806 3218 True 2972.000000 2972 83.395000 1056 4277 1 chr6D.!!$R2 3221
9 TraesCS6B01G152900 chr6D 81922114 81926707 4593 True 2452.333333 6207 94.830667 418 5150 3 chr6D.!!$R8 4732
10 TraesCS6B01G152900 chr6D 81916563 81917118 555 True 534.000000 534 84.682000 4595 5150 1 chr6D.!!$R3 555
11 TraesCS6B01G152900 chr6A 98305640 98316533 10893 True 2212.050000 5583 85.625000 418 5150 4 chr6A.!!$R3 4732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 335 0.914417 TAGTTTCAGAGGGGGCTGGG 60.914 60.000 0.0 0.0 36.55 4.45 F
1107 1614 0.888619 CTCCTACGAGTTCCTGCACA 59.111 55.000 0.0 0.0 0.00 4.57 F
1390 1903 0.035630 GTCCAGCAGCATCCTTGTCT 60.036 55.000 0.0 0.0 0.00 3.41 F
1678 2191 0.036010 AGGCCTCGGTGATTGTTCAG 60.036 55.000 0.0 0.0 30.85 3.02 F
2645 3164 1.771255 GAGCCCATCACTCCAATACCT 59.229 52.381 0.0 0.0 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1255 1765 0.405585 CCCTCAAGGCCCTTTGAAGA 59.594 55.000 8.62 0.00 36.69 2.87 R
2969 3488 2.622942 GAGCCACACAACTTTGGATTCA 59.377 45.455 0.00 0.00 34.46 2.57 R
3588 4110 0.597568 TTGGCCAGTCAAAATGCGAG 59.402 50.000 5.11 0.00 0.00 5.03 R
3590 4112 0.314935 AGTTGGCCAGTCAAAATGCG 59.685 50.000 5.11 0.00 0.00 4.73 R
4362 10997 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.877178 TTTTTAATTCCTCTGCAACTTTGTTAA 57.123 25.926 0.00 0.00 0.00 2.01
27 28 9.877178 TTTTAATTCCTCTGCAACTTTGTTAAA 57.123 25.926 0.00 0.00 0.00 1.52
65 66 4.864704 GGCAACTCCTAAAATCACCAAA 57.135 40.909 0.00 0.00 0.00 3.28
66 67 4.556233 GGCAACTCCTAAAATCACCAAAC 58.444 43.478 0.00 0.00 0.00 2.93
67 68 4.280929 GGCAACTCCTAAAATCACCAAACT 59.719 41.667 0.00 0.00 0.00 2.66
68 69 5.475564 GGCAACTCCTAAAATCACCAAACTA 59.524 40.000 0.00 0.00 0.00 2.24
69 70 6.379386 GCAACTCCTAAAATCACCAAACTAC 58.621 40.000 0.00 0.00 0.00 2.73
70 71 6.206829 GCAACTCCTAAAATCACCAAACTACT 59.793 38.462 0.00 0.00 0.00 2.57
71 72 7.573283 GCAACTCCTAAAATCACCAAACTACTC 60.573 40.741 0.00 0.00 0.00 2.59
72 73 6.473758 ACTCCTAAAATCACCAAACTACTCC 58.526 40.000 0.00 0.00 0.00 3.85
73 74 6.272558 ACTCCTAAAATCACCAAACTACTCCT 59.727 38.462 0.00 0.00 0.00 3.69
74 75 6.472887 TCCTAAAATCACCAAACTACTCCTG 58.527 40.000 0.00 0.00 0.00 3.86
75 76 5.648092 CCTAAAATCACCAAACTACTCCTGG 59.352 44.000 0.00 0.00 36.24 4.45
76 77 4.724279 AAATCACCAAACTACTCCTGGT 57.276 40.909 0.00 0.00 44.41 4.00
77 78 3.983044 ATCACCAAACTACTCCTGGTC 57.017 47.619 0.00 0.00 41.60 4.02
78 79 1.975680 TCACCAAACTACTCCTGGTCC 59.024 52.381 0.00 0.00 41.60 4.46
79 80 1.697432 CACCAAACTACTCCTGGTCCA 59.303 52.381 0.00 0.00 41.60 4.02
80 81 2.305927 CACCAAACTACTCCTGGTCCAT 59.694 50.000 0.00 0.00 41.60 3.41
81 82 3.517901 CACCAAACTACTCCTGGTCCATA 59.482 47.826 0.00 0.00 41.60 2.74
82 83 3.775316 ACCAAACTACTCCTGGTCCATAG 59.225 47.826 0.00 0.00 39.27 2.23
83 84 3.775316 CCAAACTACTCCTGGTCCATAGT 59.225 47.826 10.88 10.88 0.00 2.12
84 85 4.225267 CCAAACTACTCCTGGTCCATAGTT 59.775 45.833 11.25 10.12 37.62 2.24
85 86 5.178797 CAAACTACTCCTGGTCCATAGTTG 58.821 45.833 13.85 12.76 36.47 3.16
86 87 3.375699 ACTACTCCTGGTCCATAGTTGG 58.624 50.000 11.25 0.54 45.15 3.77
117 118 8.430801 TTCCAACATGAAACATTTTAGTTTGG 57.569 30.769 0.00 0.00 41.48 3.28
118 119 7.786030 TCCAACATGAAACATTTTAGTTTGGA 58.214 30.769 0.00 0.21 41.48 3.53
119 120 7.925483 TCCAACATGAAACATTTTAGTTTGGAG 59.075 33.333 0.00 0.00 41.48 3.86
120 121 7.925483 CCAACATGAAACATTTTAGTTTGGAGA 59.075 33.333 0.00 0.00 41.48 3.71
121 122 9.480053 CAACATGAAACATTTTAGTTTGGAGAT 57.520 29.630 0.00 0.00 41.48 2.75
129 130 9.860898 AACATTTTAGTTTGGAGATATTTGAGC 57.139 29.630 0.00 0.00 0.00 4.26
130 131 9.023962 ACATTTTAGTTTGGAGATATTTGAGCA 57.976 29.630 0.00 0.00 0.00 4.26
134 135 9.859427 TTTAGTTTGGAGATATTTGAGCATTTG 57.141 29.630 0.00 0.00 0.00 2.32
135 136 7.707624 AGTTTGGAGATATTTGAGCATTTGA 57.292 32.000 0.00 0.00 0.00 2.69
136 137 8.125978 AGTTTGGAGATATTTGAGCATTTGAA 57.874 30.769 0.00 0.00 0.00 2.69
137 138 8.587608 AGTTTGGAGATATTTGAGCATTTGAAA 58.412 29.630 0.00 0.00 0.00 2.69
138 139 9.374838 GTTTGGAGATATTTGAGCATTTGAAAT 57.625 29.630 0.00 0.00 0.00 2.17
203 204 9.973661 TGATTTAATTCAAAGACCCTAAGATGA 57.026 29.630 0.00 0.00 0.00 2.92
205 206 8.575649 TTTAATTCAAAGACCCTAAGATGACC 57.424 34.615 0.00 0.00 0.00 4.02
206 207 6.394345 AATTCAAAGACCCTAAGATGACCT 57.606 37.500 0.00 0.00 0.00 3.85
207 208 7.510675 AATTCAAAGACCCTAAGATGACCTA 57.489 36.000 0.00 0.00 0.00 3.08
208 209 6.546428 TTCAAAGACCCTAAGATGACCTAG 57.454 41.667 0.00 0.00 0.00 3.02
209 210 4.962995 TCAAAGACCCTAAGATGACCTAGG 59.037 45.833 7.41 7.41 0.00 3.02
210 211 4.901785 AAGACCCTAAGATGACCTAGGA 57.098 45.455 17.98 0.00 31.53 2.94
211 212 4.901785 AGACCCTAAGATGACCTAGGAA 57.098 45.455 17.98 3.21 31.53 3.36
212 213 5.222278 AGACCCTAAGATGACCTAGGAAA 57.778 43.478 17.98 2.79 31.53 3.13
213 214 5.600749 AGACCCTAAGATGACCTAGGAAAA 58.399 41.667 17.98 0.00 31.53 2.29
214 215 6.213525 AGACCCTAAGATGACCTAGGAAAAT 58.786 40.000 17.98 5.51 31.53 1.82
215 216 6.100424 AGACCCTAAGATGACCTAGGAAAATG 59.900 42.308 17.98 0.00 31.53 2.32
216 217 5.731678 ACCCTAAGATGACCTAGGAAAATGT 59.268 40.000 17.98 1.28 31.53 2.71
217 218 6.058183 CCCTAAGATGACCTAGGAAAATGTG 58.942 44.000 17.98 0.00 31.53 3.21
218 219 5.529060 CCTAAGATGACCTAGGAAAATGTGC 59.471 44.000 17.98 0.00 31.53 4.57
219 220 4.574674 AGATGACCTAGGAAAATGTGCA 57.425 40.909 17.98 0.65 0.00 4.57
220 221 4.265073 AGATGACCTAGGAAAATGTGCAC 58.735 43.478 17.98 10.75 0.00 4.57
221 222 2.790433 TGACCTAGGAAAATGTGCACC 58.210 47.619 17.98 0.00 0.00 5.01
222 223 2.107378 TGACCTAGGAAAATGTGCACCA 59.893 45.455 17.98 2.61 0.00 4.17
223 224 2.488153 GACCTAGGAAAATGTGCACCAC 59.512 50.000 17.98 0.95 34.56 4.16
224 225 2.108250 ACCTAGGAAAATGTGCACCACT 59.892 45.455 17.98 5.89 35.11 4.00
225 226 3.157087 CCTAGGAAAATGTGCACCACTT 58.843 45.455 15.69 4.13 35.11 3.16
226 227 3.573967 CCTAGGAAAATGTGCACCACTTT 59.426 43.478 15.69 10.78 35.11 2.66
227 228 4.039124 CCTAGGAAAATGTGCACCACTTTT 59.961 41.667 15.69 16.45 41.31 2.27
228 229 3.795877 AGGAAAATGTGCACCACTTTTG 58.204 40.909 20.07 0.00 39.59 2.44
239 240 1.986882 CCACTTTTGGCAGAGGTTCT 58.013 50.000 5.18 0.00 35.56 3.01
240 241 1.610522 CCACTTTTGGCAGAGGTTCTG 59.389 52.381 1.75 1.75 46.90 3.02
241 242 2.749466 CCACTTTTGGCAGAGGTTCTGA 60.749 50.000 10.12 0.00 45.88 3.27
242 243 4.249028 CCACTTTTGGCAGAGGTTCTGAA 61.249 47.826 10.12 0.00 45.88 3.02
243 244 6.282454 CCACTTTTGGCAGAGGTTCTGAAC 62.282 50.000 12.05 12.05 45.88 3.18
259 260 7.398834 GTTCTGAACCAAGACAAAAATGATG 57.601 36.000 9.38 0.00 0.00 3.07
260 261 6.088016 TCTGAACCAAGACAAAAATGATGG 57.912 37.500 0.00 0.00 0.00 3.51
261 262 5.010922 TCTGAACCAAGACAAAAATGATGGG 59.989 40.000 0.00 0.00 32.21 4.00
262 263 3.683365 ACCAAGACAAAAATGATGGGC 57.317 42.857 0.00 0.00 32.21 5.36
263 264 2.971330 ACCAAGACAAAAATGATGGGCA 59.029 40.909 0.00 0.00 32.21 5.36
264 265 3.583966 ACCAAGACAAAAATGATGGGCAT 59.416 39.130 0.00 0.00 39.43 4.40
275 276 2.387757 TGATGGGCATTTTAGAAGGGC 58.612 47.619 0.00 0.00 40.88 5.19
276 277 2.292126 TGATGGGCATTTTAGAAGGGCA 60.292 45.455 6.55 0.00 43.07 5.36
277 278 2.548464 TGGGCATTTTAGAAGGGCAT 57.452 45.000 6.55 0.00 43.07 4.40
278 279 2.831565 TGGGCATTTTAGAAGGGCATT 58.168 42.857 6.55 0.00 43.07 3.56
279 280 3.180507 TGGGCATTTTAGAAGGGCATTT 58.819 40.909 6.55 0.00 43.07 2.32
280 281 3.197549 TGGGCATTTTAGAAGGGCATTTC 59.802 43.478 6.55 0.00 43.07 2.17
281 282 3.197549 GGGCATTTTAGAAGGGCATTTCA 59.802 43.478 6.55 0.00 43.07 2.69
282 283 4.436332 GGCATTTTAGAAGGGCATTTCAG 58.564 43.478 0.00 0.00 41.21 3.02
283 284 4.436332 GCATTTTAGAAGGGCATTTCAGG 58.564 43.478 4.19 0.00 0.00 3.86
284 285 4.081476 GCATTTTAGAAGGGCATTTCAGGT 60.081 41.667 4.19 0.00 0.00 4.00
285 286 5.569428 GCATTTTAGAAGGGCATTTCAGGTT 60.569 40.000 4.19 0.00 0.00 3.50
286 287 5.722021 TTTTAGAAGGGCATTTCAGGTTC 57.278 39.130 4.19 0.00 0.00 3.62
287 288 2.978156 AGAAGGGCATTTCAGGTTCA 57.022 45.000 4.19 0.00 0.00 3.18
288 289 3.463048 AGAAGGGCATTTCAGGTTCAT 57.537 42.857 4.19 0.00 0.00 2.57
289 290 3.782992 AGAAGGGCATTTCAGGTTCATT 58.217 40.909 4.19 0.00 0.00 2.57
290 291 3.512724 AGAAGGGCATTTCAGGTTCATTG 59.487 43.478 4.19 0.00 0.00 2.82
291 292 3.173953 AGGGCATTTCAGGTTCATTGA 57.826 42.857 0.00 0.00 0.00 2.57
292 293 3.509442 AGGGCATTTCAGGTTCATTGAA 58.491 40.909 0.00 0.00 33.00 2.69
293 294 3.903090 AGGGCATTTCAGGTTCATTGAAA 59.097 39.130 0.00 3.25 45.49 2.69
294 295 4.347583 AGGGCATTTCAGGTTCATTGAAAA 59.652 37.500 0.00 0.00 44.83 2.29
295 296 5.062528 GGGCATTTCAGGTTCATTGAAAAA 58.937 37.500 0.00 0.00 44.83 1.94
296 297 5.179929 GGGCATTTCAGGTTCATTGAAAAAG 59.820 40.000 0.00 2.94 44.83 2.27
297 298 5.759763 GGCATTTCAGGTTCATTGAAAAAGT 59.240 36.000 0.00 0.00 44.83 2.66
298 299 6.260714 GGCATTTCAGGTTCATTGAAAAAGTT 59.739 34.615 0.00 0.00 44.83 2.66
299 300 7.201723 GGCATTTCAGGTTCATTGAAAAAGTTT 60.202 33.333 0.00 0.00 44.83 2.66
300 301 8.183536 GCATTTCAGGTTCATTGAAAAAGTTTT 58.816 29.630 0.00 0.00 44.83 2.43
304 305 9.936759 TTCAGGTTCATTGAAAAAGTTTTTAGT 57.063 25.926 13.45 0.74 31.98 2.24
326 327 7.242322 AGTAAACCCTAGTTAGTTTCAGAGG 57.758 40.000 6.17 0.00 37.39 3.69
328 329 3.451890 ACCCTAGTTAGTTTCAGAGGGG 58.548 50.000 9.50 0.00 46.79 4.79
329 330 2.772515 CCCTAGTTAGTTTCAGAGGGGG 59.227 54.545 0.00 0.00 40.09 5.40
330 331 2.170817 CCTAGTTAGTTTCAGAGGGGGC 59.829 54.545 0.00 0.00 0.00 5.80
331 332 2.046280 AGTTAGTTTCAGAGGGGGCT 57.954 50.000 0.00 0.00 0.00 5.19
332 333 1.630878 AGTTAGTTTCAGAGGGGGCTG 59.369 52.381 0.00 0.00 37.24 4.85
333 334 0.991920 TTAGTTTCAGAGGGGGCTGG 59.008 55.000 0.00 0.00 36.55 4.85
334 335 0.914417 TAGTTTCAGAGGGGGCTGGG 60.914 60.000 0.00 0.00 36.55 4.45
335 336 2.941025 TTTCAGAGGGGGCTGGGG 60.941 66.667 0.00 0.00 36.55 4.96
343 344 4.048470 GGGGCTGGGGGTTCTGTC 62.048 72.222 0.00 0.00 0.00 3.51
344 345 3.256960 GGGCTGGGGGTTCTGTCA 61.257 66.667 0.00 0.00 0.00 3.58
345 346 2.616458 GGGCTGGGGGTTCTGTCAT 61.616 63.158 0.00 0.00 0.00 3.06
346 347 1.077429 GGCTGGGGGTTCTGTCATC 60.077 63.158 0.00 0.00 0.00 2.92
347 348 1.077429 GCTGGGGGTTCTGTCATCC 60.077 63.158 0.00 0.00 0.00 3.51
348 349 1.609783 CTGGGGGTTCTGTCATCCC 59.390 63.158 0.00 0.00 40.41 3.85
353 354 2.532250 GGGTTCTGTCATCCCCATTT 57.468 50.000 0.00 0.00 37.09 2.32
354 355 2.379005 GGGTTCTGTCATCCCCATTTC 58.621 52.381 0.00 0.00 37.09 2.17
355 356 2.291540 GGGTTCTGTCATCCCCATTTCA 60.292 50.000 0.00 0.00 37.09 2.69
356 357 3.019564 GGTTCTGTCATCCCCATTTCAG 58.980 50.000 0.00 0.00 0.00 3.02
357 358 3.308402 GGTTCTGTCATCCCCATTTCAGA 60.308 47.826 0.00 0.00 0.00 3.27
358 359 4.530875 GTTCTGTCATCCCCATTTCAGAT 58.469 43.478 0.00 0.00 33.10 2.90
359 360 4.868172 TCTGTCATCCCCATTTCAGATT 57.132 40.909 0.00 0.00 0.00 2.40
360 361 5.197224 TCTGTCATCCCCATTTCAGATTT 57.803 39.130 0.00 0.00 0.00 2.17
361 362 5.195940 TCTGTCATCCCCATTTCAGATTTC 58.804 41.667 0.00 0.00 0.00 2.17
362 363 5.044624 TCTGTCATCCCCATTTCAGATTTCT 60.045 40.000 0.00 0.00 0.00 2.52
363 364 4.951715 TGTCATCCCCATTTCAGATTTCTG 59.048 41.667 0.97 0.97 45.08 3.02
384 385 7.725818 TCTGATGAAAGAATAGACATGATGC 57.274 36.000 0.00 0.00 0.00 3.91
385 386 7.277396 TCTGATGAAAGAATAGACATGATGCA 58.723 34.615 0.00 0.00 0.00 3.96
386 387 7.771826 TCTGATGAAAGAATAGACATGATGCAA 59.228 33.333 0.00 0.00 0.00 4.08
387 388 7.700505 TGATGAAAGAATAGACATGATGCAAC 58.299 34.615 0.00 0.00 0.00 4.17
388 389 7.337436 TGATGAAAGAATAGACATGATGCAACA 59.663 33.333 0.00 0.00 0.00 3.33
389 390 6.845302 TGAAAGAATAGACATGATGCAACAC 58.155 36.000 0.00 0.00 0.00 3.32
390 391 6.656270 TGAAAGAATAGACATGATGCAACACT 59.344 34.615 0.00 0.00 0.00 3.55
391 392 6.674694 AAGAATAGACATGATGCAACACTC 57.325 37.500 0.00 0.00 0.00 3.51
392 393 5.987098 AGAATAGACATGATGCAACACTCT 58.013 37.500 0.00 5.10 0.00 3.24
393 394 7.117285 AGAATAGACATGATGCAACACTCTA 57.883 36.000 12.81 12.81 0.00 2.43
394 395 7.559486 AGAATAGACATGATGCAACACTCTAA 58.441 34.615 13.88 0.00 0.00 2.10
395 396 8.209584 AGAATAGACATGATGCAACACTCTAAT 58.790 33.333 13.88 8.31 0.00 1.73
396 397 7.725818 ATAGACATGATGCAACACTCTAATG 57.274 36.000 13.88 4.86 0.00 1.90
397 398 4.334759 AGACATGATGCAACACTCTAATGC 59.665 41.667 0.00 0.00 40.45 3.56
403 404 4.424061 TGCAACACTCTAATGCATGAAC 57.576 40.909 0.00 0.00 44.52 3.18
404 405 4.074259 TGCAACACTCTAATGCATGAACT 58.926 39.130 0.00 0.00 44.52 3.01
405 406 5.244755 TGCAACACTCTAATGCATGAACTA 58.755 37.500 0.00 0.00 44.52 2.24
406 407 5.352293 TGCAACACTCTAATGCATGAACTAG 59.648 40.000 0.00 0.00 44.52 2.57
407 408 5.728898 GCAACACTCTAATGCATGAACTAGC 60.729 44.000 0.00 0.00 39.81 3.42
408 409 5.350504 ACACTCTAATGCATGAACTAGCT 57.649 39.130 0.00 0.00 0.00 3.32
409 410 6.471233 ACACTCTAATGCATGAACTAGCTA 57.529 37.500 0.00 0.00 0.00 3.32
410 411 6.511416 ACACTCTAATGCATGAACTAGCTAG 58.489 40.000 19.44 19.44 0.00 3.42
411 412 5.925397 CACTCTAATGCATGAACTAGCTAGG 59.075 44.000 24.35 7.58 0.00 3.02
412 413 5.011533 ACTCTAATGCATGAACTAGCTAGGG 59.988 44.000 24.35 9.46 0.00 3.53
413 414 4.901849 TCTAATGCATGAACTAGCTAGGGT 59.098 41.667 24.35 12.03 0.00 4.34
414 415 2.988010 TGCATGAACTAGCTAGGGTG 57.012 50.000 24.35 16.44 0.00 4.61
415 416 2.187958 TGCATGAACTAGCTAGGGTGT 58.812 47.619 24.35 6.94 0.00 4.16
416 417 2.093500 TGCATGAACTAGCTAGGGTGTG 60.093 50.000 24.35 17.06 0.00 3.82
528 529 1.009829 GCTAAGTGATGAACCAGCCG 58.990 55.000 0.00 0.00 33.29 5.52
532 533 4.776322 TGATGAACCAGCCGGCCG 62.776 66.667 26.15 21.04 34.57 6.13
534 535 4.778143 ATGAACCAGCCGGCCGTC 62.778 66.667 26.15 12.63 34.57 4.79
667 679 4.261197 GGAGAACGAAAAACAACAGCAGAT 60.261 41.667 0.00 0.00 0.00 2.90
741 753 3.812053 CGCCTAAAATCAAGAGGATGGAG 59.188 47.826 0.00 0.00 36.02 3.86
758 770 5.306678 GGATGGAGGAGATAACAGATCACTT 59.693 44.000 0.00 0.00 0.00 3.16
790 802 1.144913 CCATCCACCCCGTCCATTAAT 59.855 52.381 0.00 0.00 0.00 1.40
796 808 3.287222 CACCCCGTCCATTAATCAACAT 58.713 45.455 0.00 0.00 0.00 2.71
942 1442 1.134946 AGACCGCCATTTATGCTTTGC 59.865 47.619 0.00 0.00 0.00 3.68
1107 1614 0.888619 CTCCTACGAGTTCCTGCACA 59.111 55.000 0.00 0.00 0.00 4.57
1157 1664 3.737172 CGCCGGGCTTTCACAAGG 61.737 66.667 18.34 0.00 0.00 3.61
1254 1764 1.749063 ACGATCACCGATGTCTTGCTA 59.251 47.619 0.00 0.00 41.76 3.49
1255 1765 2.362397 ACGATCACCGATGTCTTGCTAT 59.638 45.455 0.00 0.00 41.76 2.97
1366 1876 1.675641 GGTCTGCCGCTGGAATTGT 60.676 57.895 0.00 0.00 0.00 2.71
1390 1903 0.035630 GTCCAGCAGCATCCTTGTCT 60.036 55.000 0.00 0.00 0.00 3.41
1494 2007 5.948992 ACATCTCAAGCAACTTCTTTACC 57.051 39.130 0.00 0.00 0.00 2.85
1561 2074 1.005294 GCTCAATGCCAGCAACAACG 61.005 55.000 0.00 0.00 36.82 4.10
1608 2121 2.642171 TCTGTAACACCTCCCCATCT 57.358 50.000 0.00 0.00 0.00 2.90
1665 2178 3.424105 AGCATCCCCCAAGGCCTC 61.424 66.667 5.23 0.00 34.51 4.70
1678 2191 0.036010 AGGCCTCGGTGATTGTTCAG 60.036 55.000 0.00 0.00 30.85 3.02
1702 2215 3.551407 GAGAGCTAAGGGCCGGGG 61.551 72.222 2.18 0.00 43.05 5.73
1815 2328 6.792326 AGTTCTTGATGATGCACACATATTG 58.208 36.000 7.98 2.95 36.35 1.90
1830 2343 7.678218 GCACACATATTGAACCTCAGAAATCTC 60.678 40.741 0.00 0.00 0.00 2.75
2044 2557 2.489722 GTGAATTTCTCCAACCTGCTCC 59.510 50.000 0.00 0.00 0.00 4.70
2074 2587 6.839820 AAACTTTAGACCTTCTGTACAACG 57.160 37.500 0.00 0.00 0.00 4.10
2081 2594 4.281182 AGACCTTCTGTACAACGACTTCAT 59.719 41.667 0.00 0.00 0.00 2.57
2352 2865 9.500785 AAAATTGAAGGTTTTGAGAAACTTCAA 57.499 25.926 24.93 24.93 44.74 2.69
2645 3164 1.771255 GAGCCCATCACTCCAATACCT 59.229 52.381 0.00 0.00 0.00 3.08
2969 3488 8.110860 ACATTTCCGAATTCTAGTTTTGATGT 57.889 30.769 3.52 1.20 0.00 3.06
3585 4107 5.595885 CTTCATAACAGAGATGACGATGGT 58.404 41.667 0.00 0.00 33.06 3.55
3586 4108 6.709018 TTCATAACAGAGATGACGATGGTA 57.291 37.500 0.00 0.00 33.06 3.25
3587 4109 6.319141 TCATAACAGAGATGACGATGGTAG 57.681 41.667 0.00 0.00 0.00 3.18
3588 4110 3.444703 AACAGAGATGACGATGGTAGC 57.555 47.619 0.00 0.00 0.00 3.58
3590 4112 2.621055 ACAGAGATGACGATGGTAGCTC 59.379 50.000 0.00 0.00 0.00 4.09
3591 4113 1.876799 AGAGATGACGATGGTAGCTCG 59.123 52.381 10.75 10.75 41.77 5.03
3592 4114 0.312416 AGATGACGATGGTAGCTCGC 59.688 55.000 11.82 7.19 39.71 5.03
4279 10914 7.981102 ATCTTAGAGTTTGTTTTGTACTCCC 57.019 36.000 0.00 0.00 39.23 4.30
4280 10915 7.133133 TCTTAGAGTTTGTTTTGTACTCCCT 57.867 36.000 0.00 0.00 39.23 4.20
4281 10916 7.215085 TCTTAGAGTTTGTTTTGTACTCCCTC 58.785 38.462 0.00 0.00 39.23 4.30
4282 10917 4.715713 AGAGTTTGTTTTGTACTCCCTCC 58.284 43.478 0.00 0.00 39.23 4.30
4283 10918 3.473625 AGTTTGTTTTGTACTCCCTCCG 58.526 45.455 0.00 0.00 0.00 4.63
4284 10919 3.118149 AGTTTGTTTTGTACTCCCTCCGT 60.118 43.478 0.00 0.00 0.00 4.69
4285 10920 3.564053 TTGTTTTGTACTCCCTCCGTT 57.436 42.857 0.00 0.00 0.00 4.44
4286 10921 3.116079 TGTTTTGTACTCCCTCCGTTC 57.884 47.619 0.00 0.00 0.00 3.95
4287 10922 2.064014 GTTTTGTACTCCCTCCGTTCG 58.936 52.381 0.00 0.00 0.00 3.95
4288 10923 0.604578 TTTGTACTCCCTCCGTTCGG 59.395 55.000 4.74 4.74 0.00 4.30
4289 10924 0.251297 TTGTACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
4290 10925 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
4291 10926 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4292 10927 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4293 10928 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4294 10929 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4295 10930 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4296 10931 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4297 10932 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4298 10933 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4299 10934 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4300 10935 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4301 10936 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
4302 10937 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
4303 10938 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
4304 10939 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
4305 10940 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
4306 10941 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
4307 10942 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
4308 10943 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
4309 10944 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
4310 10945 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
4311 10946 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
4312 10947 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
4313 10948 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
4314 10949 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
4315 10950 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
4316 10951 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
4317 10952 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
4318 10953 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
4319 10954 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
4320 10955 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
4321 10956 5.117287 GTCGCGAAAATGGATGTATCTAGAC 59.883 44.000 12.06 0.00 0.00 2.59
4322 10957 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
4323 10958 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
4324 10959 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
4325 10960 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
4326 10961 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
4327 10962 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
4351 10986 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
4352 10987 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
4353 10988 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
4354 10989 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
4355 10990 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
4356 10991 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
4357 10992 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
4358 10993 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
4359 10994 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
4360 10995 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
4361 10996 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
4362 10997 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
4363 10998 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
4364 10999 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
4365 11000 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
4366 11001 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4367 11002 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
4368 11003 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
4369 11004 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
4370 11005 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
4371 11006 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
4372 11007 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
4373 11008 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
4374 11009 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4375 11010 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4376 11011 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4377 11012 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4378 11013 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4379 11014 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
4380 11015 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
4381 11016 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
4402 11516 0.969149 TGTACAGAGCCTCACAGGTG 59.031 55.000 0.00 0.00 37.80 4.00
4458 11579 7.528996 AAGATTGTCACAAAATCCATCTTCA 57.471 32.000 0.00 0.00 35.09 3.02
4528 11658 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
4586 11716 2.486592 CCACGTCACTTATTTTGGGACC 59.513 50.000 0.00 0.00 0.00 4.46
4722 12720 1.266718 TGTTTGCTTTGGATCAGCGAC 59.733 47.619 0.00 0.00 40.45 5.19
4803 12806 1.336440 TGGTCCAAGCGTCAAACAATG 59.664 47.619 0.00 0.00 0.00 2.82
4805 12808 2.228822 GGTCCAAGCGTCAAACAATGAT 59.771 45.455 0.00 0.00 40.97 2.45
4807 12810 4.403453 GTCCAAGCGTCAAACAATGATAC 58.597 43.478 0.00 0.00 40.97 2.24
4808 12811 4.068599 TCCAAGCGTCAAACAATGATACA 58.931 39.130 0.00 0.00 40.97 2.29
4825 12892 9.013490 CAATGATACAAATGGAACGAGAATTTC 57.987 33.333 0.00 0.00 0.00 2.17
4841 12908 9.653287 ACGAGAATTTCAGAATGTAATAAGACA 57.347 29.630 0.00 0.00 34.89 3.41
4889 12958 2.313234 CACGCACATCAAAAAGCAGAG 58.687 47.619 0.00 0.00 0.00 3.35
4902 12975 3.591196 AAGCAGAGACTAGCAGAACAG 57.409 47.619 2.61 0.00 0.00 3.16
4935 13008 4.020573 GGCTAAATAAAACCACCTGCCTTT 60.021 41.667 0.00 0.00 35.44 3.11
4936 13009 4.929211 GCTAAATAAAACCACCTGCCTTTG 59.071 41.667 0.00 0.00 0.00 2.77
4937 13010 3.401033 AATAAAACCACCTGCCTTTGC 57.599 42.857 0.00 0.00 38.26 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.877178 TTAACAAAGTTGCAGAGGAATTAAAAA 57.123 25.926 0.00 0.00 0.00 1.94
1 2 9.877178 TTTAACAAAGTTGCAGAGGAATTAAAA 57.123 25.926 0.00 0.00 0.00 1.52
44 45 4.280929 AGTTTGGTGATTTTAGGAGTTGCC 59.719 41.667 0.00 0.00 0.00 4.52
45 46 5.453567 AGTTTGGTGATTTTAGGAGTTGC 57.546 39.130 0.00 0.00 0.00 4.17
46 47 7.094762 GGAGTAGTTTGGTGATTTTAGGAGTTG 60.095 40.741 0.00 0.00 0.00 3.16
47 48 6.940867 GGAGTAGTTTGGTGATTTTAGGAGTT 59.059 38.462 0.00 0.00 0.00 3.01
48 49 6.272558 AGGAGTAGTTTGGTGATTTTAGGAGT 59.727 38.462 0.00 0.00 0.00 3.85
49 50 6.595716 CAGGAGTAGTTTGGTGATTTTAGGAG 59.404 42.308 0.00 0.00 0.00 3.69
50 51 6.472887 CAGGAGTAGTTTGGTGATTTTAGGA 58.527 40.000 0.00 0.00 0.00 2.94
51 52 5.648092 CCAGGAGTAGTTTGGTGATTTTAGG 59.352 44.000 0.00 0.00 0.00 2.69
52 53 6.238648 ACCAGGAGTAGTTTGGTGATTTTAG 58.761 40.000 6.84 0.00 43.32 1.85
53 54 6.195600 ACCAGGAGTAGTTTGGTGATTTTA 57.804 37.500 6.84 0.00 43.32 1.52
54 55 5.061721 ACCAGGAGTAGTTTGGTGATTTT 57.938 39.130 6.84 0.00 43.32 1.82
55 56 4.506802 GGACCAGGAGTAGTTTGGTGATTT 60.507 45.833 11.27 0.00 44.88 2.17
56 57 3.009143 GGACCAGGAGTAGTTTGGTGATT 59.991 47.826 11.27 0.00 44.88 2.57
57 58 2.572104 GGACCAGGAGTAGTTTGGTGAT 59.428 50.000 11.27 0.00 44.88 3.06
58 59 1.975680 GGACCAGGAGTAGTTTGGTGA 59.024 52.381 11.27 0.00 44.88 4.02
59 60 1.697432 TGGACCAGGAGTAGTTTGGTG 59.303 52.381 11.27 0.00 44.88 4.17
61 62 3.775316 ACTATGGACCAGGAGTAGTTTGG 59.225 47.826 9.59 1.57 37.98 3.28
62 63 5.178797 CAACTATGGACCAGGAGTAGTTTG 58.821 45.833 13.33 5.36 34.39 2.93
63 64 5.422214 CAACTATGGACCAGGAGTAGTTT 57.578 43.478 13.33 0.00 34.39 2.66
91 92 8.887717 CCAAACTAAAATGTTTCATGTTGGAAA 58.112 29.630 3.66 0.00 37.98 3.13
92 93 8.260818 TCCAAACTAAAATGTTTCATGTTGGAA 58.739 29.630 0.00 0.00 37.98 3.53
93 94 7.786030 TCCAAACTAAAATGTTTCATGTTGGA 58.214 30.769 0.00 0.00 37.98 3.53
94 95 7.925483 TCTCCAAACTAAAATGTTTCATGTTGG 59.075 33.333 0.00 0.00 37.98 3.77
95 96 8.870160 TCTCCAAACTAAAATGTTTCATGTTG 57.130 30.769 0.00 0.00 37.98 3.33
103 104 9.860898 GCTCAAATATCTCCAAACTAAAATGTT 57.139 29.630 0.00 0.00 0.00 2.71
104 105 9.023962 TGCTCAAATATCTCCAAACTAAAATGT 57.976 29.630 0.00 0.00 0.00 2.71
108 109 9.859427 CAAATGCTCAAATATCTCCAAACTAAA 57.141 29.630 0.00 0.00 0.00 1.85
109 110 9.241919 TCAAATGCTCAAATATCTCCAAACTAA 57.758 29.630 0.00 0.00 0.00 2.24
110 111 8.806429 TCAAATGCTCAAATATCTCCAAACTA 57.194 30.769 0.00 0.00 0.00 2.24
111 112 7.707624 TCAAATGCTCAAATATCTCCAAACT 57.292 32.000 0.00 0.00 0.00 2.66
112 113 8.761575 TTTCAAATGCTCAAATATCTCCAAAC 57.238 30.769 0.00 0.00 0.00 2.93
177 178 9.973661 TCATCTTAGGGTCTTTGAATTAAATCA 57.026 29.630 0.00 0.00 0.00 2.57
179 180 9.190317 GGTCATCTTAGGGTCTTTGAATTAAAT 57.810 33.333 0.00 0.00 0.00 1.40
180 181 8.390921 AGGTCATCTTAGGGTCTTTGAATTAAA 58.609 33.333 0.00 0.00 0.00 1.52
181 182 7.928873 AGGTCATCTTAGGGTCTTTGAATTAA 58.071 34.615 0.00 0.00 0.00 1.40
182 183 7.510675 AGGTCATCTTAGGGTCTTTGAATTA 57.489 36.000 0.00 0.00 0.00 1.40
183 184 6.394345 AGGTCATCTTAGGGTCTTTGAATT 57.606 37.500 0.00 0.00 0.00 2.17
184 185 6.100424 CCTAGGTCATCTTAGGGTCTTTGAAT 59.900 42.308 0.00 0.00 39.02 2.57
185 186 5.425539 CCTAGGTCATCTTAGGGTCTTTGAA 59.574 44.000 0.00 0.00 39.02 2.69
186 187 4.962995 CCTAGGTCATCTTAGGGTCTTTGA 59.037 45.833 0.00 0.00 39.02 2.69
187 188 4.962995 TCCTAGGTCATCTTAGGGTCTTTG 59.037 45.833 9.08 0.00 41.78 2.77
188 189 5.222278 TCCTAGGTCATCTTAGGGTCTTT 57.778 43.478 9.08 0.00 41.78 2.52
189 190 4.901785 TCCTAGGTCATCTTAGGGTCTT 57.098 45.455 9.08 0.00 41.78 3.01
190 191 4.901785 TTCCTAGGTCATCTTAGGGTCT 57.098 45.455 9.08 0.00 41.78 3.85
191 192 5.952347 TTTTCCTAGGTCATCTTAGGGTC 57.048 43.478 9.08 0.00 41.78 4.46
192 193 5.731678 ACATTTTCCTAGGTCATCTTAGGGT 59.268 40.000 9.08 0.00 41.78 4.34
193 194 6.058183 CACATTTTCCTAGGTCATCTTAGGG 58.942 44.000 9.08 0.00 41.78 3.53
194 195 5.529060 GCACATTTTCCTAGGTCATCTTAGG 59.471 44.000 9.08 0.00 42.52 2.69
195 196 6.037610 GTGCACATTTTCCTAGGTCATCTTAG 59.962 42.308 13.17 0.00 0.00 2.18
196 197 5.880332 GTGCACATTTTCCTAGGTCATCTTA 59.120 40.000 13.17 0.00 0.00 2.10
197 198 4.702131 GTGCACATTTTCCTAGGTCATCTT 59.298 41.667 13.17 0.00 0.00 2.40
198 199 4.265073 GTGCACATTTTCCTAGGTCATCT 58.735 43.478 13.17 0.00 0.00 2.90
199 200 3.378427 GGTGCACATTTTCCTAGGTCATC 59.622 47.826 20.43 0.00 0.00 2.92
200 201 3.245229 TGGTGCACATTTTCCTAGGTCAT 60.245 43.478 20.43 0.00 0.00 3.06
201 202 2.107378 TGGTGCACATTTTCCTAGGTCA 59.893 45.455 20.43 0.00 0.00 4.02
202 203 2.488153 GTGGTGCACATTTTCCTAGGTC 59.512 50.000 20.43 0.00 34.08 3.85
203 204 2.108250 AGTGGTGCACATTTTCCTAGGT 59.892 45.455 20.43 0.00 36.74 3.08
204 205 2.795329 AGTGGTGCACATTTTCCTAGG 58.205 47.619 20.43 0.82 36.74 3.02
205 206 4.853924 AAAGTGGTGCACATTTTCCTAG 57.146 40.909 20.43 0.00 34.33 3.02
206 207 4.202202 CCAAAAGTGGTGCACATTTTCCTA 60.202 41.667 20.43 0.00 37.95 2.94
207 208 3.432046 CCAAAAGTGGTGCACATTTTCCT 60.432 43.478 20.43 1.33 37.95 3.36
208 209 2.871633 CCAAAAGTGGTGCACATTTTCC 59.128 45.455 20.43 0.00 37.95 3.13
221 222 2.575532 TCAGAACCTCTGCCAAAAGTG 58.424 47.619 0.00 0.00 43.95 3.16
222 223 2.952310 GTTCAGAACCTCTGCCAAAAGT 59.048 45.455 1.29 0.00 43.95 2.66
223 224 3.632855 GTTCAGAACCTCTGCCAAAAG 57.367 47.619 1.29 0.00 43.95 2.27
235 236 6.421801 CCATCATTTTTGTCTTGGTTCAGAAC 59.578 38.462 4.52 4.52 0.00 3.01
236 237 6.462768 CCCATCATTTTTGTCTTGGTTCAGAA 60.463 38.462 0.00 0.00 0.00 3.02
237 238 5.010922 CCCATCATTTTTGTCTTGGTTCAGA 59.989 40.000 0.00 0.00 0.00 3.27
238 239 5.232463 CCCATCATTTTTGTCTTGGTTCAG 58.768 41.667 0.00 0.00 0.00 3.02
239 240 4.502950 GCCCATCATTTTTGTCTTGGTTCA 60.503 41.667 0.00 0.00 0.00 3.18
240 241 3.996363 GCCCATCATTTTTGTCTTGGTTC 59.004 43.478 0.00 0.00 0.00 3.62
241 242 3.390639 TGCCCATCATTTTTGTCTTGGTT 59.609 39.130 0.00 0.00 0.00 3.67
242 243 2.971330 TGCCCATCATTTTTGTCTTGGT 59.029 40.909 0.00 0.00 0.00 3.67
243 244 3.681593 TGCCCATCATTTTTGTCTTGG 57.318 42.857 0.00 0.00 0.00 3.61
253 254 3.389002 GCCCTTCTAAAATGCCCATCATT 59.611 43.478 0.00 0.00 46.82 2.57
254 255 2.967887 GCCCTTCTAAAATGCCCATCAT 59.032 45.455 0.00 0.00 36.87 2.45
255 256 2.292126 TGCCCTTCTAAAATGCCCATCA 60.292 45.455 0.00 0.00 0.00 3.07
256 257 2.387757 TGCCCTTCTAAAATGCCCATC 58.612 47.619 0.00 0.00 0.00 3.51
257 258 2.548464 TGCCCTTCTAAAATGCCCAT 57.452 45.000 0.00 0.00 0.00 4.00
258 259 2.548464 ATGCCCTTCTAAAATGCCCA 57.452 45.000 0.00 0.00 0.00 5.36
259 260 3.197549 TGAAATGCCCTTCTAAAATGCCC 59.802 43.478 0.00 0.00 0.00 5.36
260 261 4.436332 CTGAAATGCCCTTCTAAAATGCC 58.564 43.478 0.00 0.00 0.00 4.40
261 262 4.081476 ACCTGAAATGCCCTTCTAAAATGC 60.081 41.667 0.00 0.00 0.00 3.56
262 263 5.665916 ACCTGAAATGCCCTTCTAAAATG 57.334 39.130 0.00 0.00 0.00 2.32
263 264 5.779771 TGAACCTGAAATGCCCTTCTAAAAT 59.220 36.000 0.00 0.00 0.00 1.82
264 265 5.144100 TGAACCTGAAATGCCCTTCTAAAA 58.856 37.500 0.00 0.00 0.00 1.52
265 266 4.735369 TGAACCTGAAATGCCCTTCTAAA 58.265 39.130 0.00 0.00 0.00 1.85
266 267 4.380843 TGAACCTGAAATGCCCTTCTAA 57.619 40.909 0.00 0.00 0.00 2.10
267 268 4.591321 ATGAACCTGAAATGCCCTTCTA 57.409 40.909 0.00 0.00 0.00 2.10
268 269 2.978156 TGAACCTGAAATGCCCTTCT 57.022 45.000 0.00 0.00 0.00 2.85
269 270 3.511146 TCAATGAACCTGAAATGCCCTTC 59.489 43.478 0.00 0.00 0.00 3.46
270 271 3.509442 TCAATGAACCTGAAATGCCCTT 58.491 40.909 0.00 0.00 0.00 3.95
271 272 3.173953 TCAATGAACCTGAAATGCCCT 57.826 42.857 0.00 0.00 0.00 5.19
272 273 3.959535 TTCAATGAACCTGAAATGCCC 57.040 42.857 0.00 0.00 29.93 5.36
273 274 5.759763 ACTTTTTCAATGAACCTGAAATGCC 59.240 36.000 0.00 0.00 41.23 4.40
274 275 6.849588 ACTTTTTCAATGAACCTGAAATGC 57.150 33.333 0.00 0.00 41.23 3.56
278 279 9.936759 ACTAAAAACTTTTTCAATGAACCTGAA 57.063 25.926 2.68 0.00 0.00 3.02
300 301 8.810041 CCTCTGAAACTAACTAGGGTTTACTAA 58.190 37.037 9.56 0.04 36.04 2.24
301 302 7.398332 CCCTCTGAAACTAACTAGGGTTTACTA 59.602 40.741 9.56 0.00 39.11 1.82
302 303 6.212993 CCCTCTGAAACTAACTAGGGTTTACT 59.787 42.308 9.56 0.00 39.11 2.24
303 304 6.404708 CCCTCTGAAACTAACTAGGGTTTAC 58.595 44.000 9.56 6.07 39.11 2.01
304 305 5.486419 CCCCTCTGAAACTAACTAGGGTTTA 59.514 44.000 0.00 0.00 41.85 2.01
305 306 4.288887 CCCCTCTGAAACTAACTAGGGTTT 59.711 45.833 0.00 9.42 41.85 3.27
306 307 3.844804 CCCCTCTGAAACTAACTAGGGTT 59.155 47.826 0.00 0.00 41.85 4.11
307 308 3.451890 CCCCTCTGAAACTAACTAGGGT 58.548 50.000 0.00 0.00 41.85 4.34
308 309 2.772515 CCCCCTCTGAAACTAACTAGGG 59.227 54.545 0.00 0.00 42.85 3.53
309 310 2.170817 GCCCCCTCTGAAACTAACTAGG 59.829 54.545 0.00 0.00 0.00 3.02
310 311 3.108376 AGCCCCCTCTGAAACTAACTAG 58.892 50.000 0.00 0.00 0.00 2.57
311 312 2.838202 CAGCCCCCTCTGAAACTAACTA 59.162 50.000 0.00 0.00 36.19 2.24
312 313 1.630878 CAGCCCCCTCTGAAACTAACT 59.369 52.381 0.00 0.00 36.19 2.24
313 314 1.340114 CCAGCCCCCTCTGAAACTAAC 60.340 57.143 0.00 0.00 36.19 2.34
314 315 0.991920 CCAGCCCCCTCTGAAACTAA 59.008 55.000 0.00 0.00 36.19 2.24
315 316 0.914417 CCCAGCCCCCTCTGAAACTA 60.914 60.000 0.00 0.00 36.19 2.24
316 317 2.234296 CCCAGCCCCCTCTGAAACT 61.234 63.158 0.00 0.00 36.19 2.66
317 318 2.356667 CCCAGCCCCCTCTGAAAC 59.643 66.667 0.00 0.00 36.19 2.78
318 319 2.941025 CCCCAGCCCCCTCTGAAA 60.941 66.667 0.00 0.00 36.19 2.69
326 327 4.048470 GACAGAACCCCCAGCCCC 62.048 72.222 0.00 0.00 0.00 5.80
327 328 2.558380 GATGACAGAACCCCCAGCCC 62.558 65.000 0.00 0.00 0.00 5.19
328 329 1.077429 GATGACAGAACCCCCAGCC 60.077 63.158 0.00 0.00 0.00 4.85
329 330 1.077429 GGATGACAGAACCCCCAGC 60.077 63.158 0.00 0.00 0.00 4.85
330 331 1.609783 GGGATGACAGAACCCCCAG 59.390 63.158 0.00 0.00 37.85 4.45
331 332 3.835134 GGGATGACAGAACCCCCA 58.165 61.111 0.00 0.00 37.85 4.96
334 335 2.291540 TGAAATGGGGATGACAGAACCC 60.292 50.000 5.21 5.21 43.64 4.11
335 336 3.019564 CTGAAATGGGGATGACAGAACC 58.980 50.000 0.00 0.00 0.00 3.62
336 337 3.955471 TCTGAAATGGGGATGACAGAAC 58.045 45.455 0.00 0.00 32.66 3.01
337 338 4.868172 ATCTGAAATGGGGATGACAGAA 57.132 40.909 0.00 0.00 37.79 3.02
338 339 4.868172 AATCTGAAATGGGGATGACAGA 57.132 40.909 0.00 0.00 38.44 3.41
339 340 5.067413 CAGAAATCTGAAATGGGGATGACAG 59.933 44.000 4.37 0.00 46.59 3.51
340 341 4.951715 CAGAAATCTGAAATGGGGATGACA 59.048 41.667 4.37 0.00 46.59 3.58
341 342 5.511234 CAGAAATCTGAAATGGGGATGAC 57.489 43.478 4.37 0.00 46.59 3.06
358 359 8.618677 GCATCATGTCTATTCTTTCATCAGAAA 58.381 33.333 0.00 0.00 41.26 2.52
359 360 7.771826 TGCATCATGTCTATTCTTTCATCAGAA 59.228 33.333 0.00 0.00 37.20 3.02
360 361 7.277396 TGCATCATGTCTATTCTTTCATCAGA 58.723 34.615 0.00 0.00 0.00 3.27
361 362 7.492352 TGCATCATGTCTATTCTTTCATCAG 57.508 36.000 0.00 0.00 0.00 2.90
362 363 7.337436 TGTTGCATCATGTCTATTCTTTCATCA 59.663 33.333 0.00 0.00 0.00 3.07
363 364 7.642978 GTGTTGCATCATGTCTATTCTTTCATC 59.357 37.037 0.00 0.00 0.00 2.92
364 365 7.338703 AGTGTTGCATCATGTCTATTCTTTCAT 59.661 33.333 0.00 0.00 0.00 2.57
365 366 6.656270 AGTGTTGCATCATGTCTATTCTTTCA 59.344 34.615 0.00 0.00 0.00 2.69
366 367 7.065563 AGAGTGTTGCATCATGTCTATTCTTTC 59.934 37.037 9.68 0.00 0.00 2.62
367 368 6.883217 AGAGTGTTGCATCATGTCTATTCTTT 59.117 34.615 9.68 0.00 0.00 2.52
368 369 6.413052 AGAGTGTTGCATCATGTCTATTCTT 58.587 36.000 9.68 0.00 0.00 2.52
369 370 5.987098 AGAGTGTTGCATCATGTCTATTCT 58.013 37.500 9.68 0.00 0.00 2.40
370 371 7.776933 TTAGAGTGTTGCATCATGTCTATTC 57.223 36.000 15.35 0.00 0.00 1.75
371 372 7.255035 GCATTAGAGTGTTGCATCATGTCTATT 60.255 37.037 15.35 11.43 36.40 1.73
372 373 6.204301 GCATTAGAGTGTTGCATCATGTCTAT 59.796 38.462 15.35 4.35 36.40 1.98
373 374 5.525012 GCATTAGAGTGTTGCATCATGTCTA 59.475 40.000 12.49 12.49 36.40 2.59
374 375 4.334759 GCATTAGAGTGTTGCATCATGTCT 59.665 41.667 13.93 13.93 36.40 3.41
375 376 4.095334 TGCATTAGAGTGTTGCATCATGTC 59.905 41.667 0.00 1.83 41.18 3.06
376 377 4.011698 TGCATTAGAGTGTTGCATCATGT 58.988 39.130 0.00 0.00 41.18 3.21
377 378 4.625972 TGCATTAGAGTGTTGCATCATG 57.374 40.909 0.00 0.00 41.18 3.07
383 384 4.691860 AGTTCATGCATTAGAGTGTTGC 57.308 40.909 0.00 0.00 36.91 4.17
384 385 5.583854 AGCTAGTTCATGCATTAGAGTGTTG 59.416 40.000 0.00 0.00 0.00 3.33
385 386 5.738909 AGCTAGTTCATGCATTAGAGTGTT 58.261 37.500 0.00 0.00 0.00 3.32
386 387 5.350504 AGCTAGTTCATGCATTAGAGTGT 57.649 39.130 0.00 0.00 0.00 3.55
387 388 5.925397 CCTAGCTAGTTCATGCATTAGAGTG 59.075 44.000 19.31 0.00 0.00 3.51
388 389 5.011533 CCCTAGCTAGTTCATGCATTAGAGT 59.988 44.000 19.31 0.00 0.00 3.24
389 390 5.011533 ACCCTAGCTAGTTCATGCATTAGAG 59.988 44.000 19.31 0.00 0.00 2.43
390 391 4.901849 ACCCTAGCTAGTTCATGCATTAGA 59.098 41.667 19.31 0.00 0.00 2.10
391 392 4.993584 CACCCTAGCTAGTTCATGCATTAG 59.006 45.833 19.31 0.00 0.00 1.73
392 393 4.408921 ACACCCTAGCTAGTTCATGCATTA 59.591 41.667 19.31 0.00 0.00 1.90
393 394 3.200825 ACACCCTAGCTAGTTCATGCATT 59.799 43.478 19.31 0.00 0.00 3.56
394 395 2.774234 ACACCCTAGCTAGTTCATGCAT 59.226 45.455 19.31 0.00 0.00 3.96
395 396 2.093500 CACACCCTAGCTAGTTCATGCA 60.093 50.000 19.31 0.00 0.00 3.96
396 397 2.168521 TCACACCCTAGCTAGTTCATGC 59.831 50.000 19.31 0.00 0.00 4.06
397 398 3.195610 TGTCACACCCTAGCTAGTTCATG 59.804 47.826 19.31 13.09 0.00 3.07
398 399 3.441101 TGTCACACCCTAGCTAGTTCAT 58.559 45.455 19.31 0.00 0.00 2.57
399 400 2.884320 TGTCACACCCTAGCTAGTTCA 58.116 47.619 19.31 5.15 0.00 3.18
400 401 3.447586 TGATGTCACACCCTAGCTAGTTC 59.552 47.826 19.31 2.85 0.00 3.01
401 402 3.441101 TGATGTCACACCCTAGCTAGTT 58.559 45.455 19.31 3.17 0.00 2.24
402 403 3.027412 CTGATGTCACACCCTAGCTAGT 58.973 50.000 19.31 0.00 0.00 2.57
403 404 2.223923 GCTGATGTCACACCCTAGCTAG 60.224 54.545 14.20 14.20 0.00 3.42
404 405 1.757118 GCTGATGTCACACCCTAGCTA 59.243 52.381 0.00 0.00 0.00 3.32
405 406 0.539051 GCTGATGTCACACCCTAGCT 59.461 55.000 0.00 0.00 0.00 3.32
406 407 0.250234 TGCTGATGTCACACCCTAGC 59.750 55.000 0.00 0.00 0.00 3.42
407 408 2.484417 GGATGCTGATGTCACACCCTAG 60.484 54.545 0.00 0.00 0.00 3.02
408 409 1.486310 GGATGCTGATGTCACACCCTA 59.514 52.381 0.00 0.00 0.00 3.53
409 410 0.254178 GGATGCTGATGTCACACCCT 59.746 55.000 0.00 0.00 0.00 4.34
410 411 0.035152 TGGATGCTGATGTCACACCC 60.035 55.000 0.00 0.00 0.00 4.61
411 412 1.741706 CTTGGATGCTGATGTCACACC 59.258 52.381 0.00 0.00 0.00 4.16
412 413 1.131883 GCTTGGATGCTGATGTCACAC 59.868 52.381 0.00 0.00 0.00 3.82
413 414 1.271488 TGCTTGGATGCTGATGTCACA 60.271 47.619 0.00 0.00 0.00 3.58
414 415 1.456296 TGCTTGGATGCTGATGTCAC 58.544 50.000 0.00 0.00 0.00 3.67
415 416 2.203470 TTGCTTGGATGCTGATGTCA 57.797 45.000 0.00 0.00 0.00 3.58
416 417 2.426024 ACATTGCTTGGATGCTGATGTC 59.574 45.455 0.00 0.00 36.49 3.06
466 467 6.990939 GGAAGGAACCATGTAGGAGTATTAAC 59.009 42.308 0.00 0.00 41.22 2.01
511 512 0.392461 GCCGGCTGGTTCATCACTTA 60.392 55.000 22.15 0.00 37.67 2.24
513 514 2.045926 GCCGGCTGGTTCATCACT 60.046 61.111 22.15 0.00 37.67 3.41
532 533 1.445238 GTGAGCTCTGGCACTCGAC 60.445 63.158 16.19 0.00 41.70 4.20
534 535 1.735920 GTGTGAGCTCTGGCACTCG 60.736 63.158 16.19 0.00 41.70 4.18
535 536 1.735920 CGTGTGAGCTCTGGCACTC 60.736 63.158 23.54 12.54 41.70 3.51
536 537 2.341543 CGTGTGAGCTCTGGCACT 59.658 61.111 23.54 0.00 41.70 4.40
537 538 2.492449 TAGCGTGTGAGCTCTGGCAC 62.492 60.000 16.19 18.25 45.67 5.01
667 679 2.033424 CGAGCTTCGTCTGATGGATACA 59.967 50.000 0.00 0.00 43.49 2.29
741 753 5.016051 TGCTGAAGTGATCTGTTATCTCC 57.984 43.478 0.00 0.00 0.00 3.71
758 770 0.036732 GTGGATGGTTGACCTGCTGA 59.963 55.000 1.34 0.00 36.82 4.26
790 802 5.765176 CAAGAAGAAGTGCAATGATGTTGA 58.235 37.500 0.00 0.00 0.00 3.18
796 808 1.888512 GGGCAAGAAGAAGTGCAATGA 59.111 47.619 0.00 0.00 42.74 2.57
900 1400 0.391661 TCATGAAAGAGCACGAGGGC 60.392 55.000 0.00 0.00 0.00 5.19
1107 1614 4.048696 GAGGCCTTCTCCTGCTCT 57.951 61.111 6.77 0.00 36.38 4.09
1254 1764 1.006400 CCCTCAAGGCCCTTTGAAGAT 59.994 52.381 8.62 0.00 36.69 2.40
1255 1765 0.405585 CCCTCAAGGCCCTTTGAAGA 59.594 55.000 8.62 0.00 36.69 2.87
1366 1876 1.123077 AGGATGCTGCTGGACGATAA 58.877 50.000 0.00 0.00 0.00 1.75
1390 1903 8.668353 GTTGAACTGATTATAGCTGATGTCAAA 58.332 33.333 0.00 0.00 0.00 2.69
1494 2007 1.078426 GGTGGATGGGAACTGTCCG 60.078 63.158 0.00 0.00 46.04 4.79
1561 2074 3.857157 TGGTATCTGCCCAGTAAATCC 57.143 47.619 0.00 0.00 0.00 3.01
1608 2121 6.936335 TGAAAGACAAATCAAGCACAGAGATA 59.064 34.615 0.00 0.00 0.00 1.98
1665 2178 1.998315 CTCAGCTCTGAACAATCACCG 59.002 52.381 0.93 0.00 39.39 4.94
1692 2205 3.503839 TTGTTGTCCCCGGCCCTT 61.504 61.111 0.00 0.00 0.00 3.95
1702 2215 2.614057 CTGTTCCACTGAGGTTGTTGTC 59.386 50.000 0.00 0.00 39.02 3.18
1771 2284 9.520515 AAGAACTCCATGTAAATGATTGTTAGT 57.479 29.630 0.00 0.00 0.00 2.24
1815 2328 4.959839 AGGGTAGAGAGATTTCTGAGGTTC 59.040 45.833 0.00 0.00 32.53 3.62
1830 2343 2.703007 CCCTCCAAGATCAAGGGTAGAG 59.297 54.545 12.16 1.72 44.11 2.43
1854 2367 5.569355 TCTGGAATCTTGCCACTGAAATTA 58.431 37.500 0.00 0.00 0.00 1.40
2044 2557 7.803279 ACAGAAGGTCTAAAGTTTTTAGGTG 57.197 36.000 8.30 1.92 0.00 4.00
2352 2865 2.941415 GCATCCTCCGATGTCCAAAACT 60.941 50.000 2.35 0.00 46.56 2.66
2645 3164 4.871871 TTAGGGAAAGCAATGGGTATGA 57.128 40.909 0.00 0.00 0.00 2.15
2969 3488 2.622942 GAGCCACACAACTTTGGATTCA 59.377 45.455 0.00 0.00 34.46 2.57
3585 4107 1.086696 GCCAGTCAAAATGCGAGCTA 58.913 50.000 0.00 0.00 0.00 3.32
3586 4108 1.589716 GGCCAGTCAAAATGCGAGCT 61.590 55.000 0.00 0.00 0.00 4.09
3587 4109 1.153958 GGCCAGTCAAAATGCGAGC 60.154 57.895 0.00 0.00 0.00 5.03
3588 4110 0.597568 TTGGCCAGTCAAAATGCGAG 59.402 50.000 5.11 0.00 0.00 5.03
3590 4112 0.314935 AGTTGGCCAGTCAAAATGCG 59.685 50.000 5.11 0.00 0.00 4.73
3591 4113 1.666888 CGAGTTGGCCAGTCAAAATGC 60.667 52.381 5.11 0.00 0.00 3.56
3592 4114 1.068333 CCGAGTTGGCCAGTCAAAATG 60.068 52.381 5.11 0.00 0.00 2.32
4277 10912 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4278 10913 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4279 10914 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
4280 10915 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
4281 10916 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
4282 10917 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
4283 10918 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
4284 10919 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
4285 10920 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
4286 10921 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
4287 10922 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
4288 10923 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
4289 10924 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
4290 10925 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
4291 10926 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
4292 10927 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
4293 10928 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
4294 10929 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
4295 10930 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
4296 10931 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
4297 10932 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
4298 10933 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
4299 10934 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
4300 10935 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
4301 10936 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
4325 10960 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
4326 10961 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
4327 10962 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
4328 10963 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
4329 10964 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
4330 10965 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
4331 10966 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
4332 10967 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
4333 10968 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
4334 10969 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
4335 10970 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
4336 10971 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
4337 10972 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
4338 10973 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
4339 10974 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
4340 10975 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
4341 10976 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
4342 10977 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
4343 10978 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4344 10979 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
4345 10980 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
4346 10981 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
4347 10982 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
4348 10983 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
4349 10984 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
4350 10985 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
4351 10986 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
4352 10987 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4353 10988 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4354 10989 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4355 10990 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4356 10991 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4357 10992 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4358 10993 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4359 10994 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4360 10995 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4361 10996 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4362 10997 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
4363 10998 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
4364 10999 0.893447 AAAGTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
4365 11000 1.271656 ACAAAGTACTCCCTCCGTTCG 59.728 52.381 0.00 0.00 0.00 3.95
4366 11001 3.256631 TGTACAAAGTACTCCCTCCGTTC 59.743 47.826 0.00 0.00 0.00 3.95
4367 11002 3.233507 TGTACAAAGTACTCCCTCCGTT 58.766 45.455 0.00 0.00 0.00 4.44
4368 11003 2.824341 CTGTACAAAGTACTCCCTCCGT 59.176 50.000 0.00 0.00 0.00 4.69
4369 11004 3.087031 TCTGTACAAAGTACTCCCTCCG 58.913 50.000 0.00 0.00 0.00 4.63
4370 11005 3.119065 GCTCTGTACAAAGTACTCCCTCC 60.119 52.174 0.00 0.00 0.00 4.30
4371 11006 3.119065 GGCTCTGTACAAAGTACTCCCTC 60.119 52.174 0.00 0.00 0.00 4.30
4372 11007 2.832733 GGCTCTGTACAAAGTACTCCCT 59.167 50.000 0.00 0.00 0.00 4.20
4373 11008 2.832733 AGGCTCTGTACAAAGTACTCCC 59.167 50.000 0.00 0.00 0.00 4.30
4374 11009 3.510360 TGAGGCTCTGTACAAAGTACTCC 59.490 47.826 16.72 2.59 0.00 3.85
4375 11010 4.022242 TGTGAGGCTCTGTACAAAGTACTC 60.022 45.833 16.72 13.06 0.00 2.59
4376 11011 3.895656 TGTGAGGCTCTGTACAAAGTACT 59.104 43.478 16.72 0.00 0.00 2.73
4377 11012 4.238514 CTGTGAGGCTCTGTACAAAGTAC 58.761 47.826 16.72 1.71 0.00 2.73
4378 11013 3.258372 CCTGTGAGGCTCTGTACAAAGTA 59.742 47.826 16.72 0.00 0.00 2.24
4379 11014 2.037772 CCTGTGAGGCTCTGTACAAAGT 59.962 50.000 16.72 0.00 0.00 2.66
4380 11015 2.037772 ACCTGTGAGGCTCTGTACAAAG 59.962 50.000 16.72 8.48 39.63 2.77
4381 11016 2.047061 ACCTGTGAGGCTCTGTACAAA 58.953 47.619 16.72 0.00 39.63 2.83
4402 11516 3.874392 ACATGTAAGCTGAAAATGGCC 57.126 42.857 0.00 0.00 0.00 5.36
4586 11716 7.170998 GTGAACCATAAAACATATACTCCCTCG 59.829 40.741 0.00 0.00 0.00 4.63
4722 12720 5.438761 CTCCAACTCTGGTGGTTTTTAAG 57.561 43.478 1.31 0.00 43.97 1.85
4803 12806 7.974675 TCTGAAATTCTCGTTCCATTTGTATC 58.025 34.615 0.00 0.00 0.00 2.24
4805 12808 7.737972 TTCTGAAATTCTCGTTCCATTTGTA 57.262 32.000 0.00 0.00 0.00 2.41
4807 12810 7.086376 ACATTCTGAAATTCTCGTTCCATTTG 58.914 34.615 0.00 0.00 0.00 2.32
4808 12811 7.219484 ACATTCTGAAATTCTCGTTCCATTT 57.781 32.000 0.00 0.00 0.00 2.32
4856 12923 4.815846 TGATGTGCGTGCTGAATTATACAT 59.184 37.500 0.00 0.00 0.00 2.29
4858 12926 4.794248 TGATGTGCGTGCTGAATTATAC 57.206 40.909 0.00 0.00 0.00 1.47
4889 12958 2.729194 TCCTCTCCTGTTCTGCTAGTC 58.271 52.381 0.00 0.00 0.00 2.59
4902 12975 5.891551 TGGTTTTATTTAGCCATTCCTCTCC 59.108 40.000 0.00 0.00 0.00 3.71
4981 13056 2.282180 TGGTTTCTTCGCCCCAGC 60.282 61.111 0.00 0.00 0.00 4.85
4982 13057 1.971695 GGTGGTTTCTTCGCCCCAG 60.972 63.158 0.00 0.00 0.00 4.45
4983 13058 2.114411 GGTGGTTTCTTCGCCCCA 59.886 61.111 0.00 0.00 0.00 4.96
4984 13059 1.971695 CAGGTGGTTTCTTCGCCCC 60.972 63.158 0.00 0.00 35.51 5.80
4985 13060 2.626780 GCAGGTGGTTTCTTCGCCC 61.627 63.158 0.00 0.00 35.51 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.