Multiple sequence alignment - TraesCS6B01G152300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G152300 chr6B 100.000 4289 0 0 1 4289 156376983 156372695 0.000000e+00 7921.0
1 TraesCS6B01G152300 chr6B 85.277 1929 265 10 1054 2977 158076720 158074806 0.000000e+00 1971.0
2 TraesCS6B01G152300 chr6B 82.983 2186 326 26 832 3000 159395795 159397951 0.000000e+00 1934.0
3 TraesCS6B01G152300 chr6B 75.777 3121 661 74 1054 4121 157109310 157106232 0.000000e+00 1487.0
4 TraesCS6B01G152300 chr6B 100.000 497 0 0 4636 5132 156372348 156371852 0.000000e+00 918.0
5 TraesCS6B01G152300 chr6B 90.076 131 7 2 580 704 209249862 209249732 1.140000e-36 165.0
6 TraesCS6B01G152300 chr6D 95.302 3491 149 8 740 4222 81674108 81670625 0.000000e+00 5524.0
7 TraesCS6B01G152300 chr6D 85.332 1943 272 9 1040 2977 83046852 83044918 0.000000e+00 1997.0
8 TraesCS6B01G152300 chr6D 85.353 1939 266 9 1037 2967 83057914 83055986 0.000000e+00 1991.0
9 TraesCS6B01G152300 chr6D 77.302 3106 621 66 1054 4111 82220417 82217348 0.000000e+00 1753.0
10 TraesCS6B01G152300 chr6D 75.715 3146 671 75 1054 4146 82203906 82200801 0.000000e+00 1491.0
11 TraesCS6B01G152300 chr6D 75.475 3103 685 63 1054 4111 81759633 81756562 0.000000e+00 1445.0
12 TraesCS6B01G152300 chr6D 90.865 208 18 1 132 338 81674634 81674427 1.410000e-70 278.0
13 TraesCS6B01G152300 chr6D 77.903 267 27 11 345 584 81674373 81674112 2.490000e-28 137.0
14 TraesCS6B01G152300 chr6A 94.431 3591 182 7 698 4283 98065218 98061641 0.000000e+00 5507.0
15 TraesCS6B01G152300 chr6A 82.891 2186 328 25 832 3000 100755253 100757409 0.000000e+00 1923.0
16 TraesCS6B01G152300 chr6A 82.176 2188 344 26 834 3004 100797363 100799521 0.000000e+00 1838.0
17 TraesCS6B01G152300 chr6A 83.171 1955 320 5 1054 3004 100738287 100740236 0.000000e+00 1779.0
18 TraesCS6B01G152300 chr6A 76.554 3105 648 63 1054 4111 98982297 98979226 0.000000e+00 1628.0
19 TraesCS6B01G152300 chr6A 76.218 3120 649 71 1054 4121 99016103 99013025 0.000000e+00 1565.0
20 TraesCS6B01G152300 chr6A 75.626 3114 677 60 1056 4121 98888027 98884948 0.000000e+00 1471.0
21 TraesCS6B01G152300 chr6A 88.393 336 28 6 4796 5131 98061653 98061329 1.340000e-105 394.0
22 TraesCS6B01G152300 chr6A 92.035 226 16 1 115 338 98065745 98065520 2.980000e-82 316.0
23 TraesCS6B01G152300 chr6A 83.613 238 20 7 362 585 98065451 98065219 6.740000e-49 206.0
24 TraesCS6B01G152300 chr6A 87.500 80 7 3 1 79 604515794 604515871 7.080000e-14 89.8
25 TraesCS6B01G152300 chr3B 94.697 132 7 0 4636 4767 818279123 818279254 6.740000e-49 206.0
26 TraesCS6B01G152300 chr3B 90.769 130 6 2 578 701 463130320 463130191 8.840000e-38 169.0
27 TraesCS6B01G152300 chr3B 93.333 75 4 1 6 79 738760512 738760586 5.430000e-20 110.0
28 TraesCS6B01G152300 chr3D 90.769 130 6 2 581 704 573869100 573868971 8.840000e-38 169.0
29 TraesCS6B01G152300 chr3D 90.667 75 5 2 7 79 393012010 393011936 1.180000e-16 99.0
30 TraesCS6B01G152300 chr2B 90.769 130 6 2 581 704 526754192 526754063 8.840000e-38 169.0
31 TraesCS6B01G152300 chr2B 94.805 77 4 0 3 79 705884595 705884519 2.510000e-23 121.0
32 TraesCS6B01G152300 chr5B 89.630 135 8 2 576 704 130514259 130514125 3.180000e-37 167.0
33 TraesCS6B01G152300 chr4D 90.698 129 6 2 581 703 465674450 465674322 3.180000e-37 167.0
34 TraesCS6B01G152300 chr4D 88.194 144 9 4 574 711 114329228 114329087 1.140000e-36 165.0
35 TraesCS6B01G152300 chr1D 90.698 129 6 2 581 703 357055705 357055577 3.180000e-37 167.0
36 TraesCS6B01G152300 chr7B 89.474 133 8 4 580 706 715227119 715227251 4.110000e-36 163.0
37 TraesCS6B01G152300 chr1B 92.593 108 8 0 4692 4799 531879417 531879310 6.880000e-34 156.0
38 TraesCS6B01G152300 chr5A 93.220 59 2 2 6 63 83274118 83274175 9.160000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G152300 chr6B 156371852 156376983 5131 True 4419.500000 7921 100.000000 1 5132 2 chr6B.!!$R4 5131
1 TraesCS6B01G152300 chr6B 158074806 158076720 1914 True 1971.000000 1971 85.277000 1054 2977 1 chr6B.!!$R2 1923
2 TraesCS6B01G152300 chr6B 159395795 159397951 2156 False 1934.000000 1934 82.983000 832 3000 1 chr6B.!!$F1 2168
3 TraesCS6B01G152300 chr6B 157106232 157109310 3078 True 1487.000000 1487 75.777000 1054 4121 1 chr6B.!!$R1 3067
4 TraesCS6B01G152300 chr6D 83044918 83046852 1934 True 1997.000000 1997 85.332000 1040 2977 1 chr6D.!!$R4 1937
5 TraesCS6B01G152300 chr6D 83055986 83057914 1928 True 1991.000000 1991 85.353000 1037 2967 1 chr6D.!!$R5 1930
6 TraesCS6B01G152300 chr6D 81670625 81674634 4009 True 1979.666667 5524 88.023333 132 4222 3 chr6D.!!$R6 4090
7 TraesCS6B01G152300 chr6D 82217348 82220417 3069 True 1753.000000 1753 77.302000 1054 4111 1 chr6D.!!$R3 3057
8 TraesCS6B01G152300 chr6D 82200801 82203906 3105 True 1491.000000 1491 75.715000 1054 4146 1 chr6D.!!$R2 3092
9 TraesCS6B01G152300 chr6D 81756562 81759633 3071 True 1445.000000 1445 75.475000 1054 4111 1 chr6D.!!$R1 3057
10 TraesCS6B01G152300 chr6A 100755253 100757409 2156 False 1923.000000 1923 82.891000 832 3000 1 chr6A.!!$F2 2168
11 TraesCS6B01G152300 chr6A 100797363 100799521 2158 False 1838.000000 1838 82.176000 834 3004 1 chr6A.!!$F3 2170
12 TraesCS6B01G152300 chr6A 100738287 100740236 1949 False 1779.000000 1779 83.171000 1054 3004 1 chr6A.!!$F1 1950
13 TraesCS6B01G152300 chr6A 98979226 98982297 3071 True 1628.000000 1628 76.554000 1054 4111 1 chr6A.!!$R2 3057
14 TraesCS6B01G152300 chr6A 98061329 98065745 4416 True 1605.750000 5507 89.618000 115 5131 4 chr6A.!!$R4 5016
15 TraesCS6B01G152300 chr6A 99013025 99016103 3078 True 1565.000000 1565 76.218000 1054 4121 1 chr6A.!!$R3 3067
16 TraesCS6B01G152300 chr6A 98884948 98888027 3079 True 1471.000000 1471 75.626000 1056 4121 1 chr6A.!!$R1 3065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 265 0.026933 TATACAAAACCATGCGCGCG 59.973 50.0 28.44 28.44 0.00 6.86 F
777 854 0.320858 TTACCGACAGGCAATCGCAA 60.321 50.0 5.02 0.00 42.76 4.85 F
1712 1807 0.602905 GCTGGCTACAACAACCTCGT 60.603 55.0 0.00 0.00 0.00 4.18 F
2982 3098 1.085893 TGTGCGGTCATATGCTTGTG 58.914 50.0 0.00 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1464 0.877071 CAAGGACAACGATGCTGCTT 59.123 50.0 0.00 0.0 0.00 3.91 R
2769 2884 0.798776 GGTTCGTGAGGTTGCAGATG 59.201 55.0 0.00 0.0 0.00 2.90 R
3216 3341 1.831652 CTCCCTTGCCTCGTGGAACT 61.832 60.0 7.92 0.0 34.57 3.01 R
4775 4906 0.034059 CTCCGGATGATAGTGGGCAC 59.966 60.0 3.57 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.856490 TTTTTCTTTCTAGTTTGATTGAGCAC 57.144 30.769 0.00 0.00 0.00 4.40
31 32 6.560253 TTCTTTCTAGTTTGATTGAGCACC 57.440 37.500 0.00 0.00 0.00 5.01
32 33 5.869579 TCTTTCTAGTTTGATTGAGCACCT 58.130 37.500 0.00 0.00 0.00 4.00
33 34 7.004555 TCTTTCTAGTTTGATTGAGCACCTA 57.995 36.000 0.00 0.00 0.00 3.08
34 35 7.099764 TCTTTCTAGTTTGATTGAGCACCTAG 58.900 38.462 0.00 0.00 0.00 3.02
35 36 6.605471 TTCTAGTTTGATTGAGCACCTAGA 57.395 37.500 0.00 0.00 31.73 2.43
36 37 6.798427 TCTAGTTTGATTGAGCACCTAGAT 57.202 37.500 0.00 0.00 30.06 1.98
37 38 6.577103 TCTAGTTTGATTGAGCACCTAGATG 58.423 40.000 0.00 0.00 30.06 2.90
38 39 5.171339 AGTTTGATTGAGCACCTAGATGT 57.829 39.130 0.00 0.00 0.00 3.06
39 40 4.940046 AGTTTGATTGAGCACCTAGATGTG 59.060 41.667 0.00 0.00 39.29 3.21
51 52 6.808008 CACCTAGATGTGCAATAATTAGGG 57.192 41.667 13.76 3.11 32.41 3.53
52 53 5.182001 CACCTAGATGTGCAATAATTAGGGC 59.818 44.000 13.76 4.62 32.41 5.19
53 54 5.163099 ACCTAGATGTGCAATAATTAGGGCA 60.163 40.000 9.15 9.15 32.41 5.36
54 55 5.948162 CCTAGATGTGCAATAATTAGGGCAT 59.052 40.000 14.61 2.99 38.68 4.40
55 56 7.112122 CCTAGATGTGCAATAATTAGGGCATA 58.888 38.462 14.61 12.88 38.68 3.14
56 57 7.776969 CCTAGATGTGCAATAATTAGGGCATAT 59.223 37.037 17.48 17.48 40.15 1.78
58 59 7.636150 GATGTGCAATAATTAGGGCATATCT 57.364 36.000 26.28 11.04 45.54 1.98
59 60 8.737168 GATGTGCAATAATTAGGGCATATCTA 57.263 34.615 26.28 11.70 45.54 1.98
60 61 8.743085 ATGTGCAATAATTAGGGCATATCTAG 57.257 34.615 14.61 0.00 38.68 2.43
61 62 7.917003 TGTGCAATAATTAGGGCATATCTAGA 58.083 34.615 14.61 0.00 38.68 2.43
62 63 8.551440 TGTGCAATAATTAGGGCATATCTAGAT 58.449 33.333 10.73 10.73 38.68 1.98
77 78 8.165239 CATATCTAGATATGCCCTAGACAGAC 57.835 42.308 30.49 0.00 43.57 3.51
78 79 4.924625 TCTAGATATGCCCTAGACAGACC 58.075 47.826 0.00 0.00 38.08 3.85
79 80 3.619900 AGATATGCCCTAGACAGACCA 57.380 47.619 0.00 0.00 0.00 4.02
80 81 3.928754 AGATATGCCCTAGACAGACCAA 58.071 45.455 0.00 0.00 0.00 3.67
81 82 3.643792 AGATATGCCCTAGACAGACCAAC 59.356 47.826 0.00 0.00 0.00 3.77
82 83 1.958288 ATGCCCTAGACAGACCAACT 58.042 50.000 0.00 0.00 0.00 3.16
83 84 2.615986 TGCCCTAGACAGACCAACTA 57.384 50.000 0.00 0.00 0.00 2.24
84 85 2.176889 TGCCCTAGACAGACCAACTAC 58.823 52.381 0.00 0.00 0.00 2.73
85 86 1.481363 GCCCTAGACAGACCAACTACC 59.519 57.143 0.00 0.00 0.00 3.18
86 87 2.816411 CCCTAGACAGACCAACTACCA 58.184 52.381 0.00 0.00 0.00 3.25
87 88 3.170717 CCCTAGACAGACCAACTACCAA 58.829 50.000 0.00 0.00 0.00 3.67
88 89 3.056035 CCCTAGACAGACCAACTACCAAC 60.056 52.174 0.00 0.00 0.00 3.77
89 90 3.576982 CCTAGACAGACCAACTACCAACA 59.423 47.826 0.00 0.00 0.00 3.33
90 91 4.223032 CCTAGACAGACCAACTACCAACAT 59.777 45.833 0.00 0.00 0.00 2.71
91 92 4.706842 AGACAGACCAACTACCAACATT 57.293 40.909 0.00 0.00 0.00 2.71
92 93 5.818678 AGACAGACCAACTACCAACATTA 57.181 39.130 0.00 0.00 0.00 1.90
93 94 5.794894 AGACAGACCAACTACCAACATTAG 58.205 41.667 0.00 0.00 0.00 1.73
94 95 5.542635 AGACAGACCAACTACCAACATTAGA 59.457 40.000 0.00 0.00 0.00 2.10
95 96 5.794894 ACAGACCAACTACCAACATTAGAG 58.205 41.667 0.00 0.00 0.00 2.43
96 97 5.307196 ACAGACCAACTACCAACATTAGAGT 59.693 40.000 0.00 0.00 0.00 3.24
97 98 5.869888 CAGACCAACTACCAACATTAGAGTC 59.130 44.000 0.00 0.00 0.00 3.36
98 99 5.780793 AGACCAACTACCAACATTAGAGTCT 59.219 40.000 0.00 0.00 0.00 3.24
99 100 6.952358 AGACCAACTACCAACATTAGAGTCTA 59.048 38.462 0.00 0.00 30.40 2.59
100 101 7.453752 AGACCAACTACCAACATTAGAGTCTAA 59.546 37.037 14.87 14.87 30.40 2.10
101 102 7.970102 ACCAACTACCAACATTAGAGTCTAAA 58.030 34.615 16.37 1.06 0.00 1.85
102 103 8.434392 ACCAACTACCAACATTAGAGTCTAAAA 58.566 33.333 16.37 0.00 0.00 1.52
103 104 9.280174 CCAACTACCAACATTAGAGTCTAAAAA 57.720 33.333 16.37 0.00 0.00 1.94
105 106 8.530269 ACTACCAACATTAGAGTCTAAAAACG 57.470 34.615 16.37 8.21 0.00 3.60
106 107 6.237313 ACCAACATTAGAGTCTAAAAACGC 57.763 37.500 16.37 0.00 0.00 4.84
107 108 5.761234 ACCAACATTAGAGTCTAAAAACGCA 59.239 36.000 16.37 0.00 0.00 5.24
108 109 6.073222 ACCAACATTAGAGTCTAAAAACGCAG 60.073 38.462 16.37 5.66 0.00 5.18
109 110 6.147164 CCAACATTAGAGTCTAAAAACGCAGA 59.853 38.462 16.37 0.00 0.00 4.26
110 111 7.148407 CCAACATTAGAGTCTAAAAACGCAGAT 60.148 37.037 16.37 0.00 0.00 2.90
111 112 8.869897 CAACATTAGAGTCTAAAAACGCAGATA 58.130 33.333 16.37 0.00 0.00 1.98
112 113 8.997621 ACATTAGAGTCTAAAAACGCAGATAA 57.002 30.769 16.37 0.00 0.00 1.75
113 114 9.431887 ACATTAGAGTCTAAAAACGCAGATAAA 57.568 29.630 16.37 0.00 0.00 1.40
129 130 7.752239 ACGCAGATAAATGCATAGAAAATATGC 59.248 33.333 11.91 11.91 46.87 3.14
144 147 7.784037 AGAAAATATGCATGTATCCAAAAGCA 58.216 30.769 10.16 0.00 33.46 3.91
147 150 2.169330 TGCATGTATCCAAAAGCAGCA 58.831 42.857 0.00 0.00 0.00 4.41
189 192 3.134127 GTCGCATTGCCCTCCACC 61.134 66.667 2.41 0.00 0.00 4.61
243 247 1.839994 CCCTCCACTTGGATGCTCTTA 59.160 52.381 0.00 0.00 44.46 2.10
245 249 3.648067 CCCTCCACTTGGATGCTCTTATA 59.352 47.826 0.00 0.00 44.46 0.98
261 265 0.026933 TATACAAAACCATGCGCGCG 59.973 50.000 28.44 28.44 0.00 6.86
322 326 0.924823 ATTTCCCTCTGGATGCTGCT 59.075 50.000 0.00 0.00 41.40 4.24
338 342 1.153289 GCTGCCTCACCGATCACAT 60.153 57.895 0.00 0.00 0.00 3.21
340 344 1.858091 CTGCCTCACCGATCACATAC 58.142 55.000 0.00 0.00 0.00 2.39
342 346 1.409064 TGCCTCACCGATCACATACTC 59.591 52.381 0.00 0.00 0.00 2.59
343 347 1.269831 GCCTCACCGATCACATACTCC 60.270 57.143 0.00 0.00 0.00 3.85
353 404 1.638070 TCACATACTCCCATGGGCAAA 59.362 47.619 27.41 13.43 34.68 3.68
359 410 2.104303 TCCCATGGGCAAAAGGGAT 58.896 52.632 27.41 0.00 45.15 3.85
401 452 4.636206 ACTCTTCAGTTTCTGTCACCAAAC 59.364 41.667 0.00 0.00 32.61 2.93
404 458 4.695217 TCAGTTTCTGTCACCAAACAAC 57.305 40.909 3.03 0.00 35.33 3.32
409 463 3.342377 TCTGTCACCAAACAACACAGA 57.658 42.857 0.00 0.00 40.89 3.41
457 522 6.743575 AGCAGATCAAGTAAATTAAACGCT 57.256 33.333 0.00 0.00 0.00 5.07
458 523 6.776094 AGCAGATCAAGTAAATTAAACGCTC 58.224 36.000 0.00 0.00 0.00 5.03
468 533 8.193250 AGTAAATTAAACGCTCGACATAACAT 57.807 30.769 0.00 0.00 0.00 2.71
470 535 9.904647 GTAAATTAAACGCTCGACATAACATAA 57.095 29.630 0.00 0.00 0.00 1.90
473 538 5.450376 AAACGCTCGACATAACATAACAG 57.550 39.130 0.00 0.00 0.00 3.16
474 539 4.365899 ACGCTCGACATAACATAACAGA 57.634 40.909 0.00 0.00 0.00 3.41
475 540 4.103357 ACGCTCGACATAACATAACAGAC 58.897 43.478 0.00 0.00 0.00 3.51
476 541 3.486108 CGCTCGACATAACATAACAGACC 59.514 47.826 0.00 0.00 0.00 3.85
477 542 4.430007 GCTCGACATAACATAACAGACCA 58.570 43.478 0.00 0.00 0.00 4.02
478 543 5.050490 GCTCGACATAACATAACAGACCAT 58.950 41.667 0.00 0.00 0.00 3.55
479 544 5.523916 GCTCGACATAACATAACAGACCATT 59.476 40.000 0.00 0.00 0.00 3.16
503 568 3.376546 GGACTTGATCAAGAATGACTGCC 59.623 47.826 36.15 19.99 40.79 4.85
510 575 6.182627 TGATCAAGAATGACTGCCAAGTATT 58.817 36.000 0.00 0.00 38.69 1.89
516 581 5.351465 AGAATGACTGCCAAGTATTAACACG 59.649 40.000 0.00 0.00 36.52 4.49
522 587 2.706890 CCAAGTATTAACACGCCAGGT 58.293 47.619 0.00 0.00 0.00 4.00
565 642 6.949578 TCAATTAAACTAAAAGCATGCAGC 57.050 33.333 21.98 0.00 46.19 5.25
578 655 4.108699 GCATGCAGCAACAGGTTATTAA 57.891 40.909 14.21 0.00 44.79 1.40
579 656 4.107622 GCATGCAGCAACAGGTTATTAAG 58.892 43.478 14.21 0.00 44.79 1.85
580 657 4.380867 GCATGCAGCAACAGGTTATTAAGT 60.381 41.667 14.21 0.00 44.79 2.24
581 658 5.163663 GCATGCAGCAACAGGTTATTAAGTA 60.164 40.000 14.21 0.00 44.79 2.24
582 659 5.873179 TGCAGCAACAGGTTATTAAGTAC 57.127 39.130 0.00 0.00 0.00 2.73
583 660 5.556915 TGCAGCAACAGGTTATTAAGTACT 58.443 37.500 0.00 0.00 0.00 2.73
585 662 5.064834 GCAGCAACAGGTTATTAAGTACTCC 59.935 44.000 0.00 0.00 0.00 3.85
587 664 5.487845 AGCAACAGGTTATTAAGTACTCCCT 59.512 40.000 0.00 0.00 0.00 4.20
588 665 5.816258 GCAACAGGTTATTAAGTACTCCCTC 59.184 44.000 0.00 0.00 0.00 4.30
589 666 6.346896 CAACAGGTTATTAAGTACTCCCTCC 58.653 44.000 0.00 0.00 0.00 4.30
590 667 4.648307 ACAGGTTATTAAGTACTCCCTCCG 59.352 45.833 0.00 0.00 0.00 4.63
591 668 4.648307 CAGGTTATTAAGTACTCCCTCCGT 59.352 45.833 0.00 0.00 0.00 4.69
592 669 4.892345 AGGTTATTAAGTACTCCCTCCGTC 59.108 45.833 0.00 0.00 0.00 4.79
593 670 4.038522 GGTTATTAAGTACTCCCTCCGTCC 59.961 50.000 0.00 0.00 0.00 4.79
594 671 2.149973 TTAAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
595 672 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
596 673 0.324460 AAGTACTCCCTCCGTCCCAG 60.324 60.000 0.00 0.00 0.00 4.45
597 674 1.212934 AGTACTCCCTCCGTCCCAGA 61.213 60.000 0.00 0.00 0.00 3.86
598 675 0.324091 GTACTCCCTCCGTCCCAGAA 60.324 60.000 0.00 0.00 0.00 3.02
599 676 0.635009 TACTCCCTCCGTCCCAGAAT 59.365 55.000 0.00 0.00 0.00 2.40
600 677 0.635009 ACTCCCTCCGTCCCAGAATA 59.365 55.000 0.00 0.00 0.00 1.75
601 678 1.041437 CTCCCTCCGTCCCAGAATAC 58.959 60.000 0.00 0.00 0.00 1.89
602 679 0.635009 TCCCTCCGTCCCAGAATACT 59.365 55.000 0.00 0.00 0.00 2.12
603 680 1.007963 TCCCTCCGTCCCAGAATACTT 59.992 52.381 0.00 0.00 0.00 2.24
604 681 1.139058 CCCTCCGTCCCAGAATACTTG 59.861 57.143 0.00 0.00 0.00 3.16
605 682 1.831736 CCTCCGTCCCAGAATACTTGT 59.168 52.381 0.00 0.00 0.00 3.16
606 683 2.159085 CCTCCGTCCCAGAATACTTGTC 60.159 54.545 0.00 0.00 0.00 3.18
607 684 2.761208 CTCCGTCCCAGAATACTTGTCT 59.239 50.000 0.00 0.00 0.00 3.41
608 685 3.170717 TCCGTCCCAGAATACTTGTCTT 58.829 45.455 0.00 0.00 0.00 3.01
609 686 4.346730 TCCGTCCCAGAATACTTGTCTTA 58.653 43.478 0.00 0.00 0.00 2.10
610 687 4.773674 TCCGTCCCAGAATACTTGTCTTAA 59.226 41.667 0.00 0.00 0.00 1.85
611 688 5.246656 TCCGTCCCAGAATACTTGTCTTAAA 59.753 40.000 0.00 0.00 0.00 1.52
612 689 6.070424 TCCGTCCCAGAATACTTGTCTTAAAT 60.070 38.462 0.00 0.00 0.00 1.40
613 690 6.598064 CCGTCCCAGAATACTTGTCTTAAATT 59.402 38.462 0.00 0.00 0.00 1.82
614 691 7.120726 CCGTCCCAGAATACTTGTCTTAAATTT 59.879 37.037 0.00 0.00 0.00 1.82
615 692 7.962918 CGTCCCAGAATACTTGTCTTAAATTTG 59.037 37.037 0.00 0.00 0.00 2.32
616 693 8.793592 GTCCCAGAATACTTGTCTTAAATTTGT 58.206 33.333 0.00 0.00 0.00 2.83
617 694 9.010029 TCCCAGAATACTTGTCTTAAATTTGTC 57.990 33.333 0.00 0.00 0.00 3.18
618 695 9.014297 CCCAGAATACTTGTCTTAAATTTGTCT 57.986 33.333 0.00 0.00 0.00 3.41
656 733 9.952030 TTCATGTTTTAGTGTTAGATACATCCA 57.048 29.630 0.00 0.00 39.39 3.41
691 768 8.587952 AAATTTAAGACAAGAATTTTGGGACG 57.412 30.769 0.00 0.00 31.00 4.79
692 769 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
693 770 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
694 771 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
695 772 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
696 773 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
727 804 4.277515 TCATGGATGCCTGCTAACTATC 57.722 45.455 0.00 0.00 0.00 2.08
733 810 3.694043 TGCCTGCTAACTATCAACACA 57.306 42.857 0.00 0.00 0.00 3.72
739 816 5.124457 CCTGCTAACTATCAACACAGCAATT 59.876 40.000 0.00 0.00 38.45 2.32
777 854 0.320858 TTACCGACAGGCAATCGCAA 60.321 50.000 5.02 0.00 42.76 4.85
786 863 2.821366 CAATCGCAAGCGGCCTCT 60.821 61.111 14.98 0.00 40.31 3.69
876 953 2.793278 TTTCTTTTTCCTTCGCCTGC 57.207 45.000 0.00 0.00 0.00 4.85
917 994 3.504520 GGATCAAACAAAAAGGAGCCGTA 59.495 43.478 0.00 0.00 0.00 4.02
921 998 1.244816 ACAAAAAGGAGCCGTAAGCC 58.755 50.000 0.00 0.00 45.47 4.35
990 1071 1.471851 GGTTCCCTTCGCTAGCTTCTC 60.472 57.143 13.93 0.00 0.00 2.87
1087 1180 1.985116 GTCTCCTTGGCCTCTCCGT 60.985 63.158 3.32 0.00 37.80 4.69
1184 1277 1.290324 CGACATGGCGGAGGGATAG 59.710 63.158 14.85 0.00 0.00 2.08
1195 1288 0.762461 GAGGGATAGGGACTGCTGCT 60.762 60.000 0.00 0.00 41.52 4.24
1371 1464 1.069090 GCTGGAGTTGGTGTCGTCA 59.931 57.895 0.00 0.00 0.00 4.35
1674 1769 1.211457 CCAGGGCTCAGTAATTGCTCT 59.789 52.381 0.00 0.00 38.15 4.09
1683 1778 3.748048 TCAGTAATTGCTCTGTGCTGAAC 59.252 43.478 3.20 0.00 43.37 3.18
1711 1806 1.626654 CGCTGGCTACAACAACCTCG 61.627 60.000 0.00 0.00 0.00 4.63
1712 1807 0.602905 GCTGGCTACAACAACCTCGT 60.603 55.000 0.00 0.00 0.00 4.18
2229 2332 6.151144 ACAACTCCCTTACAAATATCACAAGC 59.849 38.462 0.00 0.00 0.00 4.01
2245 2348 3.188048 CACAAGCACACTTCAGATCCTTC 59.812 47.826 0.00 0.00 32.29 3.46
2703 2818 3.873952 GTGTGATACCTGAGAAGATTGGC 59.126 47.826 0.00 0.00 0.00 4.52
2755 2870 2.912956 AGCTCCAACCAACTATCTGGAA 59.087 45.455 0.00 0.00 38.96 3.53
2982 3098 1.085893 TGTGCGGTCATATGCTTGTG 58.914 50.000 0.00 0.00 0.00 3.33
3045 3161 6.544197 AGAGAAGAAAGAAAAAGAAGGGTGTC 59.456 38.462 0.00 0.00 0.00 3.67
3162 3287 3.460103 CAAAAGGCAGAGCAACAACAAT 58.540 40.909 0.00 0.00 0.00 2.71
3216 3341 8.089625 TCAATTCAGAATACTCCTTGGTGATA 57.910 34.615 0.00 0.00 0.00 2.15
3690 3821 4.014406 TCAAGTCGAGCAACATCCTACTA 58.986 43.478 0.00 0.00 0.00 1.82
3727 3858 2.558359 GCTTATGTTGCAGACTTTGGGT 59.442 45.455 0.00 0.00 0.00 4.51
3765 3896 2.154462 CCCAACAGAACTCATGTGACC 58.846 52.381 0.94 0.00 0.00 4.02
3789 3920 0.964358 AGTTGGTCGGTACTCTCGGG 60.964 60.000 0.00 0.00 0.00 5.14
3876 4007 1.071699 GTGGTCCTGCTTGAACTGGTA 59.928 52.381 0.00 0.00 0.00 3.25
4258 4389 8.725405 TTAGTTCTTTTGTACAGATTGTGACA 57.275 30.769 0.00 0.00 0.00 3.58
4259 4390 7.016361 AGTTCTTTTGTACAGATTGTGACAC 57.984 36.000 0.00 0.00 0.00 3.67
4281 4412 3.006110 CGGCCCTATACGGAAATCTTGTA 59.994 47.826 0.00 0.00 33.16 2.41
4282 4413 4.501915 CGGCCCTATACGGAAATCTTGTAA 60.502 45.833 0.00 0.00 33.16 2.41
4283 4414 5.370679 GGCCCTATACGGAAATCTTGTAAA 58.629 41.667 0.00 0.00 33.16 2.01
4284 4415 6.002082 GGCCCTATACGGAAATCTTGTAAAT 58.998 40.000 0.00 0.00 33.16 1.40
4285 4416 6.489022 GGCCCTATACGGAAATCTTGTAAATT 59.511 38.462 0.00 0.00 33.16 1.82
4286 4417 7.013942 GGCCCTATACGGAAATCTTGTAAATTT 59.986 37.037 0.00 0.00 33.16 1.82
4287 4418 8.410912 GCCCTATACGGAAATCTTGTAAATTTT 58.589 33.333 0.00 0.00 33.16 1.82
4663 4794 8.970859 AATATATATATTGAGCCTGTTCAGGC 57.029 34.615 29.68 29.68 41.79 4.85
4664 4795 8.551440 AATATATATATTGAGCCTGTTCAGGCA 58.449 33.333 35.14 21.21 42.77 4.75
4673 4804 3.559238 CCTGTTCAGGCAACACAATAC 57.441 47.619 5.89 0.00 40.29 1.89
4674 4805 2.228822 CCTGTTCAGGCAACACAATACC 59.771 50.000 5.89 0.00 40.29 2.73
4675 4806 1.876799 TGTTCAGGCAACACAATACCG 59.123 47.619 0.00 0.00 40.29 4.02
4676 4807 0.878416 TTCAGGCAACACAATACCGC 59.122 50.000 0.00 0.00 41.41 5.68
4677 4808 0.250510 TCAGGCAACACAATACCGCA 60.251 50.000 0.00 0.00 41.41 5.69
4678 4809 0.168788 CAGGCAACACAATACCGCAG 59.831 55.000 0.00 0.00 41.41 5.18
4679 4810 1.154035 GGCAACACAATACCGCAGC 60.154 57.895 0.00 0.00 0.00 5.25
4680 4811 1.578926 GCAACACAATACCGCAGCA 59.421 52.632 0.00 0.00 0.00 4.41
4681 4812 0.454957 GCAACACAATACCGCAGCAG 60.455 55.000 0.00 0.00 0.00 4.24
4682 4813 0.168788 CAACACAATACCGCAGCAGG 59.831 55.000 0.00 0.00 37.30 4.85
4683 4814 0.960364 AACACAATACCGCAGCAGGG 60.960 55.000 7.98 0.00 35.02 4.45
4705 4836 4.097361 GGGGACGGGGAACAGCTC 62.097 72.222 0.00 0.00 0.00 4.09
4706 4837 4.097361 GGGACGGGGAACAGCTCC 62.097 72.222 0.00 0.00 44.54 4.70
4714 4845 2.685202 GGAACAGCTCCCCTACACT 58.315 57.895 0.00 0.00 38.44 3.55
4715 4846 1.861982 GGAACAGCTCCCCTACACTA 58.138 55.000 0.00 0.00 38.44 2.74
4716 4847 1.481363 GGAACAGCTCCCCTACACTAC 59.519 57.143 0.00 0.00 38.44 2.73
4717 4848 2.176889 GAACAGCTCCCCTACACTACA 58.823 52.381 0.00 0.00 0.00 2.74
4718 4849 1.558233 ACAGCTCCCCTACACTACAC 58.442 55.000 0.00 0.00 0.00 2.90
4719 4850 1.203137 ACAGCTCCCCTACACTACACA 60.203 52.381 0.00 0.00 0.00 3.72
4720 4851 1.899814 CAGCTCCCCTACACTACACAA 59.100 52.381 0.00 0.00 0.00 3.33
4721 4852 2.301870 CAGCTCCCCTACACTACACAAA 59.698 50.000 0.00 0.00 0.00 2.83
4722 4853 2.302157 AGCTCCCCTACACTACACAAAC 59.698 50.000 0.00 0.00 0.00 2.93
4723 4854 2.038033 GCTCCCCTACACTACACAAACA 59.962 50.000 0.00 0.00 0.00 2.83
4724 4855 3.660865 CTCCCCTACACTACACAAACAC 58.339 50.000 0.00 0.00 0.00 3.32
4725 4856 2.369532 TCCCCTACACTACACAAACACC 59.630 50.000 0.00 0.00 0.00 4.16
4726 4857 2.370849 CCCCTACACTACACAAACACCT 59.629 50.000 0.00 0.00 0.00 4.00
4727 4858 3.579586 CCCCTACACTACACAAACACCTA 59.420 47.826 0.00 0.00 0.00 3.08
4728 4859 4.562143 CCCCTACACTACACAAACACCTAC 60.562 50.000 0.00 0.00 0.00 3.18
4729 4860 4.562143 CCCTACACTACACAAACACCTACC 60.562 50.000 0.00 0.00 0.00 3.18
4730 4861 3.480505 ACACTACACAAACACCTACCC 57.519 47.619 0.00 0.00 0.00 3.69
4731 4862 3.043418 ACACTACACAAACACCTACCCT 58.957 45.455 0.00 0.00 0.00 4.34
4732 4863 4.225573 ACACTACACAAACACCTACCCTA 58.774 43.478 0.00 0.00 0.00 3.53
4733 4864 4.039609 ACACTACACAAACACCTACCCTAC 59.960 45.833 0.00 0.00 0.00 3.18
4734 4865 3.580022 ACTACACAAACACCTACCCTACC 59.420 47.826 0.00 0.00 0.00 3.18
4735 4866 1.701292 ACACAAACACCTACCCTACCC 59.299 52.381 0.00 0.00 0.00 3.69
4736 4867 1.700739 CACAAACACCTACCCTACCCA 59.299 52.381 0.00 0.00 0.00 4.51
4737 4868 2.106857 CACAAACACCTACCCTACCCAA 59.893 50.000 0.00 0.00 0.00 4.12
4738 4869 2.374170 ACAAACACCTACCCTACCCAAG 59.626 50.000 0.00 0.00 0.00 3.61
4739 4870 2.374170 CAAACACCTACCCTACCCAAGT 59.626 50.000 0.00 0.00 0.00 3.16
4740 4871 2.428181 ACACCTACCCTACCCAAGTT 57.572 50.000 0.00 0.00 0.00 2.66
4741 4872 2.709966 ACACCTACCCTACCCAAGTTT 58.290 47.619 0.00 0.00 0.00 2.66
4742 4873 3.058341 ACACCTACCCTACCCAAGTTTT 58.942 45.455 0.00 0.00 0.00 2.43
4743 4874 3.464456 ACACCTACCCTACCCAAGTTTTT 59.536 43.478 0.00 0.00 0.00 1.94
4744 4875 4.664536 ACACCTACCCTACCCAAGTTTTTA 59.335 41.667 0.00 0.00 0.00 1.52
4745 4876 5.005740 CACCTACCCTACCCAAGTTTTTAC 58.994 45.833 0.00 0.00 0.00 2.01
4746 4877 4.664536 ACCTACCCTACCCAAGTTTTTACA 59.335 41.667 0.00 0.00 0.00 2.41
4747 4878 5.221986 ACCTACCCTACCCAAGTTTTTACAG 60.222 44.000 0.00 0.00 0.00 2.74
4748 4879 5.013391 CCTACCCTACCCAAGTTTTTACAGA 59.987 44.000 0.00 0.00 0.00 3.41
4749 4880 5.594199 ACCCTACCCAAGTTTTTACAGAT 57.406 39.130 0.00 0.00 0.00 2.90
4750 4881 5.321927 ACCCTACCCAAGTTTTTACAGATG 58.678 41.667 0.00 0.00 0.00 2.90
4751 4882 5.073965 ACCCTACCCAAGTTTTTACAGATGA 59.926 40.000 0.00 0.00 0.00 2.92
4752 4883 6.007703 CCCTACCCAAGTTTTTACAGATGAA 58.992 40.000 0.00 0.00 0.00 2.57
4753 4884 6.151144 CCCTACCCAAGTTTTTACAGATGAAG 59.849 42.308 0.00 0.00 0.00 3.02
4754 4885 6.151144 CCTACCCAAGTTTTTACAGATGAAGG 59.849 42.308 0.00 0.00 0.00 3.46
4755 4886 5.701224 ACCCAAGTTTTTACAGATGAAGGA 58.299 37.500 0.00 0.00 0.00 3.36
4756 4887 5.535030 ACCCAAGTTTTTACAGATGAAGGAC 59.465 40.000 0.00 0.00 0.00 3.85
4757 4888 5.334879 CCCAAGTTTTTACAGATGAAGGACG 60.335 44.000 0.00 0.00 0.00 4.79
4758 4889 5.147162 CAAGTTTTTACAGATGAAGGACGC 58.853 41.667 0.00 0.00 0.00 5.19
4759 4890 3.751698 AGTTTTTACAGATGAAGGACGCC 59.248 43.478 0.00 0.00 0.00 5.68
4760 4891 3.410631 TTTTACAGATGAAGGACGCCA 57.589 42.857 0.00 0.00 0.00 5.69
4761 4892 3.410631 TTTACAGATGAAGGACGCCAA 57.589 42.857 0.00 0.00 0.00 4.52
4762 4893 2.672961 TACAGATGAAGGACGCCAAG 57.327 50.000 0.00 0.00 0.00 3.61
4763 4894 0.674895 ACAGATGAAGGACGCCAAGC 60.675 55.000 0.00 0.00 0.00 4.01
4764 4895 1.078143 AGATGAAGGACGCCAAGCC 60.078 57.895 0.00 0.00 0.00 4.35
4765 4896 1.377202 GATGAAGGACGCCAAGCCA 60.377 57.895 0.00 0.00 0.00 4.75
4766 4897 1.648467 GATGAAGGACGCCAAGCCAC 61.648 60.000 0.00 0.00 0.00 5.01
4767 4898 2.281484 GAAGGACGCCAAGCCACA 60.281 61.111 0.00 0.00 0.00 4.17
4768 4899 2.594592 AAGGACGCCAAGCCACAC 60.595 61.111 0.00 0.00 0.00 3.82
4769 4900 4.988598 AGGACGCCAAGCCACACG 62.989 66.667 0.00 0.00 0.00 4.49
4771 4902 3.712881 GACGCCAAGCCACACGTC 61.713 66.667 4.51 4.51 46.64 4.34
4774 4905 2.742372 GCCAAGCCACACGTCGAT 60.742 61.111 0.00 0.00 0.00 3.59
4775 4906 3.027170 GCCAAGCCACACGTCGATG 62.027 63.158 2.26 2.26 0.00 3.84
4776 4907 1.667830 CCAAGCCACACGTCGATGT 60.668 57.895 3.92 3.92 0.00 3.06
4781 4912 2.356913 CACACGTCGATGTGCCCA 60.357 61.111 32.43 0.00 43.29 5.36
4782 4913 2.357034 ACACGTCGATGTGCCCAC 60.357 61.111 32.43 0.00 43.74 4.61
4783 4914 2.048222 CACGTCGATGTGCCCACT 60.048 61.111 23.82 0.00 32.31 4.00
4784 4915 1.214325 CACGTCGATGTGCCCACTA 59.786 57.895 23.82 0.00 32.31 2.74
4785 4916 0.179111 CACGTCGATGTGCCCACTAT 60.179 55.000 23.82 0.00 32.31 2.12
4786 4917 0.102481 ACGTCGATGTGCCCACTATC 59.898 55.000 10.06 1.52 0.00 2.08
4787 4918 0.102300 CGTCGATGTGCCCACTATCA 59.898 55.000 0.00 0.00 0.00 2.15
4788 4919 1.269778 CGTCGATGTGCCCACTATCAT 60.270 52.381 0.00 0.00 0.00 2.45
4789 4920 2.408050 GTCGATGTGCCCACTATCATC 58.592 52.381 0.00 0.00 34.98 2.92
4790 4921 1.344438 TCGATGTGCCCACTATCATCC 59.656 52.381 0.00 0.00 34.89 3.51
4791 4922 1.800805 GATGTGCCCACTATCATCCG 58.199 55.000 0.00 0.00 33.01 4.18
4792 4923 0.397941 ATGTGCCCACTATCATCCGG 59.602 55.000 0.00 0.00 0.00 5.14
4793 4924 0.689412 TGTGCCCACTATCATCCGGA 60.689 55.000 6.61 6.61 0.00 5.14
4794 4925 0.034059 GTGCCCACTATCATCCGGAG 59.966 60.000 11.34 2.05 0.00 4.63
4817 4948 6.058183 AGGGAAATCTTGTAATTCATCTCCG 58.942 40.000 0.00 0.00 0.00 4.63
4830 4961 0.325671 ATCTCCGCTTCCCCTCTTCA 60.326 55.000 0.00 0.00 0.00 3.02
4864 4995 3.059597 GTGTGCGCCATGAGTAATGATAC 60.060 47.826 4.18 0.00 38.72 2.24
4865 4996 3.181466 TGTGCGCCATGAGTAATGATACT 60.181 43.478 4.18 0.00 45.10 2.12
4866 4997 3.185188 GTGCGCCATGAGTAATGATACTG 59.815 47.826 4.18 0.00 42.47 2.74
4890 5021 0.456312 GTTGCTCGGTTCGTCGATCT 60.456 55.000 0.00 0.00 38.55 2.75
4906 5037 3.133003 TCGATCTCCAACATTCTCCTTCC 59.867 47.826 0.00 0.00 0.00 3.46
4907 5038 3.118629 CGATCTCCAACATTCTCCTTCCA 60.119 47.826 0.00 0.00 0.00 3.53
4910 5041 5.261040 TCTCCAACATTCTCCTTCCAAAT 57.739 39.130 0.00 0.00 0.00 2.32
4980 5111 1.390565 AGGAGACAATCGTAGGGTCG 58.609 55.000 0.00 0.00 36.68 4.79
5001 5132 2.026915 CGTGGCGGAAACAAAAGTAC 57.973 50.000 0.00 0.00 0.00 2.73
5008 5139 5.180492 TGGCGGAAACAAAAGTACTGAATAG 59.820 40.000 0.00 0.00 0.00 1.73
5009 5140 5.391629 GGCGGAAACAAAAGTACTGAATAGG 60.392 44.000 0.00 0.00 0.00 2.57
5012 5143 7.361799 GCGGAAACAAAAGTACTGAATAGGAAT 60.362 37.037 0.00 0.00 0.00 3.01
5013 5144 7.962918 CGGAAACAAAAGTACTGAATAGGAATG 59.037 37.037 0.00 0.00 0.00 2.67
5014 5145 9.010029 GGAAACAAAAGTACTGAATAGGAATGA 57.990 33.333 0.00 0.00 0.00 2.57
5019 5150 9.219603 CAAAAGTACTGAATAGGAATGAGACAA 57.780 33.333 0.00 0.00 0.00 3.18
5020 5151 9.965902 AAAAGTACTGAATAGGAATGAGACAAT 57.034 29.630 0.00 0.00 0.00 2.71
5021 5152 9.606631 AAAGTACTGAATAGGAATGAGACAATC 57.393 33.333 0.00 0.00 0.00 2.67
5022 5153 8.311395 AGTACTGAATAGGAATGAGACAATCA 57.689 34.615 0.00 0.00 43.70 2.57
5023 5154 8.762645 AGTACTGAATAGGAATGAGACAATCAA 58.237 33.333 0.00 0.00 42.53 2.57
5024 5155 7.856145 ACTGAATAGGAATGAGACAATCAAC 57.144 36.000 0.00 0.00 42.53 3.18
5025 5156 7.397221 ACTGAATAGGAATGAGACAATCAACA 58.603 34.615 0.00 0.00 42.53 3.33
5026 5157 7.884877 ACTGAATAGGAATGAGACAATCAACAA 59.115 33.333 0.00 0.00 42.53 2.83
5037 5168 6.072728 TGAGACAATCAACAAGGGTAAAATCG 60.073 38.462 0.00 0.00 34.02 3.34
5039 5170 5.768317 ACAATCAACAAGGGTAAAATCGTG 58.232 37.500 0.00 0.00 0.00 4.35
5041 5172 5.880054 ATCAACAAGGGTAAAATCGTGAG 57.120 39.130 0.00 0.00 0.00 3.51
5048 5179 1.471287 GGTAAAATCGTGAGGTTGGCC 59.529 52.381 0.00 0.00 32.51 5.36
5065 5196 1.135112 GGCCAATTCGATGGTCCAAAC 60.135 52.381 6.90 0.00 42.75 2.93
5066 5197 1.543802 GCCAATTCGATGGTCCAAACA 59.456 47.619 6.90 0.00 42.75 2.83
5079 5210 1.843368 CCAAACAGTGGGATGAGCAT 58.157 50.000 0.00 0.00 44.64 3.79
5080 5211 1.475280 CCAAACAGTGGGATGAGCATG 59.525 52.381 0.00 0.00 44.64 4.06
5088 5219 1.117150 GGGATGAGCATGCAAATGGT 58.883 50.000 21.98 0.00 34.63 3.55
5091 5222 2.166870 GGATGAGCATGCAAATGGTTCA 59.833 45.455 21.98 13.15 31.72 3.18
5110 5241 5.406649 GTTCAAGAACATCACCACAAAACA 58.593 37.500 8.01 0.00 40.84 2.83
5113 5244 4.900635 AGAACATCACCACAAAACAGAC 57.099 40.909 0.00 0.00 0.00 3.51
5119 5250 3.278574 TCACCACAAAACAGACTGGAAG 58.721 45.455 7.51 0.00 42.29 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.920682 GGTGCTCAATCAAACTAGAAAGAAAAA 59.079 33.333 0.00 0.00 0.00 1.94
6 7 7.285401 AGGTGCTCAATCAAACTAGAAAGAAAA 59.715 33.333 0.00 0.00 0.00 2.29
7 8 6.772716 AGGTGCTCAATCAAACTAGAAAGAAA 59.227 34.615 0.00 0.00 0.00 2.52
8 9 6.299141 AGGTGCTCAATCAAACTAGAAAGAA 58.701 36.000 0.00 0.00 0.00 2.52
9 10 5.869579 AGGTGCTCAATCAAACTAGAAAGA 58.130 37.500 0.00 0.00 0.00 2.52
10 11 7.099764 TCTAGGTGCTCAATCAAACTAGAAAG 58.900 38.462 0.00 0.00 34.62 2.62
11 12 7.004555 TCTAGGTGCTCAATCAAACTAGAAA 57.995 36.000 0.00 0.00 34.62 2.52
12 13 6.605471 TCTAGGTGCTCAATCAAACTAGAA 57.395 37.500 0.00 0.00 34.62 2.10
13 14 6.155221 ACATCTAGGTGCTCAATCAAACTAGA 59.845 38.462 1.90 0.00 38.26 2.43
14 15 6.257411 CACATCTAGGTGCTCAATCAAACTAG 59.743 42.308 1.90 0.00 32.02 2.57
15 16 6.108687 CACATCTAGGTGCTCAATCAAACTA 58.891 40.000 1.90 0.00 31.10 2.24
16 17 4.940046 CACATCTAGGTGCTCAATCAAACT 59.060 41.667 1.90 0.00 31.10 2.66
17 18 5.227238 CACATCTAGGTGCTCAATCAAAC 57.773 43.478 1.90 0.00 31.10 2.93
28 29 5.182001 GCCCTAATTATTGCACATCTAGGTG 59.818 44.000 0.04 0.04 41.72 4.00
29 30 5.163099 TGCCCTAATTATTGCACATCTAGGT 60.163 40.000 5.26 0.00 0.00 3.08
30 31 5.316167 TGCCCTAATTATTGCACATCTAGG 58.684 41.667 5.26 0.00 0.00 3.02
31 32 8.743085 ATATGCCCTAATTATTGCACATCTAG 57.257 34.615 10.27 0.00 36.41 2.43
32 33 8.551440 AGATATGCCCTAATTATTGCACATCTA 58.449 33.333 20.20 8.25 43.88 1.98
33 34 7.408543 AGATATGCCCTAATTATTGCACATCT 58.591 34.615 17.72 17.72 41.68 2.90
34 35 7.636150 AGATATGCCCTAATTATTGCACATC 57.364 36.000 14.92 14.92 37.79 3.06
35 36 8.551440 TCTAGATATGCCCTAATTATTGCACAT 58.449 33.333 10.27 5.73 36.41 3.21
36 37 7.917003 TCTAGATATGCCCTAATTATTGCACA 58.083 34.615 10.27 1.42 36.41 4.57
37 38 8.970859 ATCTAGATATGCCCTAATTATTGCAC 57.029 34.615 2.53 1.08 36.41 4.57
53 54 7.091765 TGGTCTGTCTAGGGCATATCTAGATAT 60.092 40.741 17.93 17.93 43.25 1.63
54 55 6.217693 TGGTCTGTCTAGGGCATATCTAGATA 59.782 42.308 14.76 14.76 43.25 1.98
55 56 5.015710 TGGTCTGTCTAGGGCATATCTAGAT 59.984 44.000 10.73 10.73 43.25 1.98
56 57 4.354087 TGGTCTGTCTAGGGCATATCTAGA 59.646 45.833 0.00 0.00 40.38 2.43
57 58 4.667573 TGGTCTGTCTAGGGCATATCTAG 58.332 47.826 0.00 0.00 36.46 2.43
58 59 4.741928 TGGTCTGTCTAGGGCATATCTA 57.258 45.455 0.00 0.00 0.00 1.98
59 60 3.619900 TGGTCTGTCTAGGGCATATCT 57.380 47.619 0.00 0.00 0.00 1.98
60 61 3.643792 AGTTGGTCTGTCTAGGGCATATC 59.356 47.826 0.00 0.00 0.00 1.63
61 62 3.658725 AGTTGGTCTGTCTAGGGCATAT 58.341 45.455 0.00 0.00 0.00 1.78
62 63 3.116096 AGTTGGTCTGTCTAGGGCATA 57.884 47.619 0.00 0.00 0.00 3.14
63 64 1.958288 AGTTGGTCTGTCTAGGGCAT 58.042 50.000 0.00 0.00 0.00 4.40
64 65 2.176889 GTAGTTGGTCTGTCTAGGGCA 58.823 52.381 0.00 0.00 0.00 5.36
65 66 1.481363 GGTAGTTGGTCTGTCTAGGGC 59.519 57.143 0.00 0.00 0.00 5.19
66 67 2.816411 TGGTAGTTGGTCTGTCTAGGG 58.184 52.381 0.00 0.00 0.00 3.53
67 68 3.576982 TGTTGGTAGTTGGTCTGTCTAGG 59.423 47.826 0.00 0.00 0.00 3.02
68 69 4.866508 TGTTGGTAGTTGGTCTGTCTAG 57.133 45.455 0.00 0.00 0.00 2.43
69 70 5.818678 AATGTTGGTAGTTGGTCTGTCTA 57.181 39.130 0.00 0.00 0.00 2.59
70 71 4.706842 AATGTTGGTAGTTGGTCTGTCT 57.293 40.909 0.00 0.00 0.00 3.41
71 72 5.790593 TCTAATGTTGGTAGTTGGTCTGTC 58.209 41.667 0.00 0.00 0.00 3.51
72 73 5.307196 ACTCTAATGTTGGTAGTTGGTCTGT 59.693 40.000 0.00 0.00 0.00 3.41
73 74 5.794894 ACTCTAATGTTGGTAGTTGGTCTG 58.205 41.667 0.00 0.00 0.00 3.51
74 75 5.780793 AGACTCTAATGTTGGTAGTTGGTCT 59.219 40.000 0.00 0.00 0.00 3.85
75 76 6.038997 AGACTCTAATGTTGGTAGTTGGTC 57.961 41.667 0.00 0.00 0.00 4.02
76 77 7.549147 TTAGACTCTAATGTTGGTAGTTGGT 57.451 36.000 0.00 0.00 0.00 3.67
77 78 8.842358 TTTTAGACTCTAATGTTGGTAGTTGG 57.158 34.615 0.00 0.00 0.00 3.77
79 80 8.985805 CGTTTTTAGACTCTAATGTTGGTAGTT 58.014 33.333 0.00 0.00 0.00 2.24
80 81 7.117379 GCGTTTTTAGACTCTAATGTTGGTAGT 59.883 37.037 0.00 0.00 0.00 2.73
81 82 7.117236 TGCGTTTTTAGACTCTAATGTTGGTAG 59.883 37.037 0.00 0.00 0.00 3.18
82 83 6.930164 TGCGTTTTTAGACTCTAATGTTGGTA 59.070 34.615 0.00 0.00 0.00 3.25
83 84 5.761234 TGCGTTTTTAGACTCTAATGTTGGT 59.239 36.000 0.00 0.00 0.00 3.67
84 85 6.147164 TCTGCGTTTTTAGACTCTAATGTTGG 59.853 38.462 0.00 0.00 0.00 3.77
85 86 7.117241 TCTGCGTTTTTAGACTCTAATGTTG 57.883 36.000 0.00 0.00 0.00 3.33
86 87 7.907214 ATCTGCGTTTTTAGACTCTAATGTT 57.093 32.000 0.00 0.00 0.00 2.71
87 88 8.997621 TTATCTGCGTTTTTAGACTCTAATGT 57.002 30.769 0.00 0.00 0.00 2.71
90 91 8.388103 GCATTTATCTGCGTTTTTAGACTCTAA 58.612 33.333 0.00 0.00 31.49 2.10
91 92 7.547722 TGCATTTATCTGCGTTTTTAGACTCTA 59.452 33.333 0.00 0.00 45.30 2.43
92 93 6.371548 TGCATTTATCTGCGTTTTTAGACTCT 59.628 34.615 0.00 0.00 45.30 3.24
93 94 6.542852 TGCATTTATCTGCGTTTTTAGACTC 58.457 36.000 0.00 0.00 45.30 3.36
94 95 6.494893 TGCATTTATCTGCGTTTTTAGACT 57.505 33.333 0.00 0.00 45.30 3.24
95 96 8.335356 TCTATGCATTTATCTGCGTTTTTAGAC 58.665 33.333 3.54 0.00 45.30 2.59
96 97 8.432110 TCTATGCATTTATCTGCGTTTTTAGA 57.568 30.769 3.54 0.00 45.30 2.10
97 98 9.502145 TTTCTATGCATTTATCTGCGTTTTTAG 57.498 29.630 3.54 0.00 45.30 1.85
98 99 9.847706 TTTTCTATGCATTTATCTGCGTTTTTA 57.152 25.926 3.54 0.00 45.30 1.52
99 100 8.755696 TTTTCTATGCATTTATCTGCGTTTTT 57.244 26.923 3.54 0.00 45.30 1.94
100 101 8.931385 ATTTTCTATGCATTTATCTGCGTTTT 57.069 26.923 3.54 0.00 45.30 2.43
102 103 9.616634 CATATTTTCTATGCATTTATCTGCGTT 57.383 29.630 3.54 0.00 45.30 4.84
103 104 7.752239 GCATATTTTCTATGCATTTATCTGCGT 59.248 33.333 3.54 0.00 46.89 5.24
104 105 8.100863 GCATATTTTCTATGCATTTATCTGCG 57.899 34.615 3.54 0.00 46.89 5.18
129 130 6.349115 GGAGATATGCTGCTTTTGGATACATG 60.349 42.308 0.00 0.00 38.12 3.21
147 150 2.523245 TGAGCAGATCAGCGGAGATAT 58.477 47.619 4.27 0.00 40.15 1.63
158 161 3.685592 CGACACGCTGAGCAGATC 58.314 61.111 4.88 0.00 0.00 2.75
189 192 1.305219 TGATTTTGGAGAAGGCGCGG 61.305 55.000 8.83 0.00 0.00 6.46
243 247 1.226267 CGCGCGCATGGTTTTGTAT 60.226 52.632 32.61 0.00 0.00 2.29
298 302 2.752154 AGCATCCAGAGGGAAATGCATC 60.752 50.000 0.00 0.00 46.93 3.91
322 326 1.409064 GAGTATGTGATCGGTGAGGCA 59.591 52.381 0.00 0.00 0.00 4.75
338 342 0.334676 CCCTTTTGCCCATGGGAGTA 59.665 55.000 36.00 16.73 42.11 2.59
340 344 1.387737 TCCCTTTTGCCCATGGGAG 59.612 57.895 36.00 21.82 43.20 4.30
342 346 0.618393 ACATCCCTTTTGCCCATGGG 60.618 55.000 27.87 27.87 40.95 4.00
343 347 2.157640 TACATCCCTTTTGCCCATGG 57.842 50.000 4.14 4.14 0.00 3.66
353 404 3.421394 TCACCTCCTGATACATCCCTT 57.579 47.619 0.00 0.00 0.00 3.95
359 410 7.180229 TGAAGAGTAAATTCACCTCCTGATACA 59.820 37.037 0.00 0.00 31.86 2.29
401 452 6.867662 ACCTTATCTTGTTCTTCTGTGTTG 57.132 37.500 0.00 0.00 0.00 3.33
404 458 7.824289 TGGATTACCTTATCTTGTTCTTCTGTG 59.176 37.037 0.00 0.00 37.04 3.66
409 463 9.892130 CTAACTGGATTACCTTATCTTGTTCTT 57.108 33.333 0.00 0.00 37.04 2.52
457 522 7.068962 TCCTAATGGTCTGTTATGTTATGTCGA 59.931 37.037 0.00 0.00 34.23 4.20
458 523 7.169308 GTCCTAATGGTCTGTTATGTTATGTCG 59.831 40.741 0.00 0.00 34.23 4.35
468 533 6.867519 TGATCAAGTCCTAATGGTCTGTTA 57.132 37.500 0.00 0.00 32.23 2.41
470 535 5.485353 TCTTGATCAAGTCCTAATGGTCTGT 59.515 40.000 29.80 0.00 39.38 3.41
473 538 7.011857 GTCATTCTTGATCAAGTCCTAATGGTC 59.988 40.741 29.12 22.70 39.38 4.02
474 539 6.825721 GTCATTCTTGATCAAGTCCTAATGGT 59.174 38.462 29.12 9.24 39.38 3.55
475 540 7.012138 CAGTCATTCTTGATCAAGTCCTAATGG 59.988 40.741 29.12 18.55 39.38 3.16
476 541 7.466996 GCAGTCATTCTTGATCAAGTCCTAATG 60.467 40.741 29.80 27.94 39.38 1.90
477 542 6.541641 GCAGTCATTCTTGATCAAGTCCTAAT 59.458 38.462 29.80 20.49 39.38 1.73
478 543 5.877012 GCAGTCATTCTTGATCAAGTCCTAA 59.123 40.000 29.80 19.32 39.38 2.69
479 544 5.423015 GCAGTCATTCTTGATCAAGTCCTA 58.577 41.667 29.80 16.67 39.38 2.94
503 568 4.331717 CCTAACCTGGCGTGTTAATACTTG 59.668 45.833 0.65 0.00 0.00 3.16
510 575 1.927487 TCTCCTAACCTGGCGTGTTA 58.073 50.000 0.00 0.00 0.00 2.41
516 581 2.237392 ACATCACTTCTCCTAACCTGGC 59.763 50.000 0.00 0.00 0.00 4.85
522 587 6.857437 TTGATCTCACATCACTTCTCCTAA 57.143 37.500 0.00 0.00 0.00 2.69
556 628 1.843368 ATAACCTGTTGCTGCATGCT 58.157 45.000 20.33 0.00 43.37 3.79
559 636 6.180472 AGTACTTAATAACCTGTTGCTGCAT 58.820 36.000 1.84 0.00 0.00 3.96
565 642 6.346896 GGAGGGAGTACTTAATAACCTGTTG 58.653 44.000 0.00 0.00 0.00 3.33
571 648 4.038522 GGGACGGAGGGAGTACTTAATAAC 59.961 50.000 0.00 0.00 0.00 1.89
573 650 3.205056 TGGGACGGAGGGAGTACTTAATA 59.795 47.826 0.00 0.00 0.00 0.98
578 655 1.212934 TCTGGGACGGAGGGAGTACT 61.213 60.000 0.00 0.00 39.80 2.73
579 656 1.305623 TCTGGGACGGAGGGAGTAC 59.694 63.158 0.00 0.00 39.80 2.73
580 657 3.845559 TCTGGGACGGAGGGAGTA 58.154 61.111 0.00 0.00 39.80 2.59
587 664 2.816411 AGACAAGTATTCTGGGACGGA 58.184 47.619 0.00 0.00 45.11 4.69
588 665 3.611766 AAGACAAGTATTCTGGGACGG 57.388 47.619 0.00 0.00 0.00 4.79
589 666 7.611213 AATTTAAGACAAGTATTCTGGGACG 57.389 36.000 0.00 0.00 0.00 4.79
590 667 8.793592 ACAAATTTAAGACAAGTATTCTGGGAC 58.206 33.333 0.00 0.00 0.00 4.46
591 668 8.934023 ACAAATTTAAGACAAGTATTCTGGGA 57.066 30.769 0.00 0.00 0.00 4.37
592 669 9.014297 AGACAAATTTAAGACAAGTATTCTGGG 57.986 33.333 0.00 0.00 0.00 4.45
630 707 9.952030 TGGATGTATCTAACACTAAAACATGAA 57.048 29.630 0.00 0.00 42.09 2.57
665 742 9.685828 CGTCCCAAAATTCTTGTCTTAAATTTA 57.314 29.630 0.00 0.00 32.84 1.40
666 743 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
667 744 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
668 745 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
669 746 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
670 747 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
671 748 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
672 749 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
673 750 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
674 751 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
675 752 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
676 753 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
677 754 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
678 755 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
679 756 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
680 757 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
681 758 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
682 759 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
683 760 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
684 761 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
685 762 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
686 763 2.149973 TTAAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
687 764 3.294214 TGATTAAGTACTCCCTCCGTCC 58.706 50.000 0.00 0.00 0.00 4.79
688 765 4.262079 CCATGATTAAGTACTCCCTCCGTC 60.262 50.000 0.00 0.00 0.00 4.79
689 766 3.641906 CCATGATTAAGTACTCCCTCCGT 59.358 47.826 0.00 0.00 0.00 4.69
690 767 3.895656 TCCATGATTAAGTACTCCCTCCG 59.104 47.826 0.00 0.00 0.00 4.63
691 768 5.799213 CATCCATGATTAAGTACTCCCTCC 58.201 45.833 0.00 0.00 0.00 4.30
692 769 5.241662 GCATCCATGATTAAGTACTCCCTC 58.758 45.833 0.00 0.00 0.00 4.30
693 770 4.042187 GGCATCCATGATTAAGTACTCCCT 59.958 45.833 0.00 0.00 0.00 4.20
694 771 4.042187 AGGCATCCATGATTAAGTACTCCC 59.958 45.833 0.00 0.00 0.00 4.30
695 772 4.999950 CAGGCATCCATGATTAAGTACTCC 59.000 45.833 0.00 0.00 0.00 3.85
696 773 4.453819 GCAGGCATCCATGATTAAGTACTC 59.546 45.833 0.00 0.00 0.00 2.59
727 804 2.984471 GTGCTCATGAATTGCTGTGTTG 59.016 45.455 6.93 0.00 0.00 3.33
733 810 3.570975 TGACTTTGTGCTCATGAATTGCT 59.429 39.130 6.93 0.00 0.00 3.91
739 816 4.515191 GGTAAGTTGACTTTGTGCTCATGA 59.485 41.667 1.20 0.00 37.40 3.07
777 854 2.045926 ATTTTCGCAGAGGCCGCT 60.046 55.556 1.77 1.77 38.43 5.52
784 861 2.290367 CACACCTTGACATTTTCGCAGA 59.710 45.455 0.00 0.00 0.00 4.26
786 863 2.293170 TCACACCTTGACATTTTCGCA 58.707 42.857 0.00 0.00 0.00 5.10
876 953 0.376852 CTCTCTTCTCAGGTCGCTCG 59.623 60.000 0.00 0.00 0.00 5.03
917 994 3.767630 AACGGGACACAAGCGGCTT 62.768 57.895 9.94 9.94 0.00 4.35
921 998 2.027625 GAGGAACGGGACACAAGCG 61.028 63.158 0.00 0.00 0.00 4.68
990 1071 0.102481 GCATCTGCATGGCTTTCTGG 59.898 55.000 0.00 0.00 41.59 3.86
1168 1261 1.843376 CCCTATCCCTCCGCCATGT 60.843 63.158 0.00 0.00 0.00 3.21
1184 1277 4.767255 CCCACGAGCAGCAGTCCC 62.767 72.222 0.00 0.00 0.00 4.46
1195 1288 1.080354 AGGTGATCCCTTCCCACGA 59.920 57.895 0.00 0.00 42.73 4.35
1371 1464 0.877071 CAAGGACAACGATGCTGCTT 59.123 50.000 0.00 0.00 0.00 3.91
1674 1769 2.031012 CCGAGCAGGTTCAGCACA 59.969 61.111 0.00 0.00 34.51 4.57
1711 1806 2.046217 GTCCGGAAGAGCCCCAAC 60.046 66.667 5.23 0.00 0.00 3.77
1712 1807 3.702048 CGTCCGGAAGAGCCCCAA 61.702 66.667 12.53 0.00 0.00 4.12
2245 2348 1.984570 TGAGGCTCCTGGAACTCCG 60.985 63.158 19.53 1.38 39.43 4.63
2703 2818 2.548480 GGAAACGAGTCCTTTCAACTGG 59.452 50.000 14.14 0.00 34.56 4.00
2769 2884 0.798776 GGTTCGTGAGGTTGCAGATG 59.201 55.000 0.00 0.00 0.00 2.90
3162 3287 6.888105 TGAAGATGTTGCCTCTATGTCATTA 58.112 36.000 0.00 0.00 0.00 1.90
3216 3341 1.831652 CTCCCTTGCCTCGTGGAACT 61.832 60.000 7.92 0.00 34.57 3.01
3690 3821 7.420800 CAACATAAGCTTTGAAGTCTTTGTCT 58.579 34.615 3.20 0.00 0.00 3.41
3727 3858 5.193527 TGTTGGGGAAGATCAATCTGGATAA 59.806 40.000 0.00 0.00 37.19 1.75
3765 3896 1.887198 AGAGTACCGACCAACTCAGTG 59.113 52.381 5.38 0.00 43.74 3.66
4203 4334 0.516439 GAGCACAGAACTTGCAGCTC 59.484 55.000 4.79 4.79 45.14 4.09
4258 4389 1.713297 AGATTTCCGTATAGGGCCGT 58.287 50.000 2.24 2.24 41.52 5.68
4259 4390 2.224209 ACAAGATTTCCGTATAGGGCCG 60.224 50.000 6.59 0.00 41.52 6.13
4653 4784 2.228822 GGTATTGTGTTGCCTGAACAGG 59.771 50.000 15.64 15.64 45.46 4.00
4654 4785 2.095768 CGGTATTGTGTTGCCTGAACAG 60.096 50.000 0.00 0.00 45.46 3.16
4655 4786 1.876799 CGGTATTGTGTTGCCTGAACA 59.123 47.619 0.00 0.00 42.55 3.18
4656 4787 1.401018 GCGGTATTGTGTTGCCTGAAC 60.401 52.381 0.00 0.00 34.84 3.18
4657 4788 0.878416 GCGGTATTGTGTTGCCTGAA 59.122 50.000 0.00 0.00 0.00 3.02
4658 4789 0.250510 TGCGGTATTGTGTTGCCTGA 60.251 50.000 0.00 0.00 0.00 3.86
4659 4790 0.168788 CTGCGGTATTGTGTTGCCTG 59.831 55.000 0.00 0.00 0.00 4.85
4660 4791 1.586154 GCTGCGGTATTGTGTTGCCT 61.586 55.000 0.00 0.00 0.00 4.75
4661 4792 1.154035 GCTGCGGTATTGTGTTGCC 60.154 57.895 0.00 0.00 0.00 4.52
4662 4793 0.454957 CTGCTGCGGTATTGTGTTGC 60.455 55.000 0.00 0.00 0.00 4.17
4663 4794 0.168788 CCTGCTGCGGTATTGTGTTG 59.831 55.000 7.82 0.00 0.00 3.33
4664 4795 0.960364 CCCTGCTGCGGTATTGTGTT 60.960 55.000 7.82 0.00 0.00 3.32
4665 4796 1.377202 CCCTGCTGCGGTATTGTGT 60.377 57.895 7.82 0.00 0.00 3.72
4666 4797 2.114670 CCCCTGCTGCGGTATTGTG 61.115 63.158 7.82 0.00 0.00 3.33
4667 4798 2.272146 CCCCTGCTGCGGTATTGT 59.728 61.111 7.82 0.00 0.00 2.71
4668 4799 2.516930 CCCCCTGCTGCGGTATTG 60.517 66.667 7.82 0.00 0.00 1.90
4688 4819 4.097361 GAGCTGTTCCCCGTCCCC 62.097 72.222 0.00 0.00 0.00 4.81
4689 4820 4.097361 GGAGCTGTTCCCCGTCCC 62.097 72.222 0.00 0.00 40.37 4.46
4696 4827 1.481363 GTAGTGTAGGGGAGCTGTTCC 59.519 57.143 1.35 1.35 46.00 3.62
4697 4828 2.094130 GTGTAGTGTAGGGGAGCTGTTC 60.094 54.545 0.00 0.00 0.00 3.18
4698 4829 1.900486 GTGTAGTGTAGGGGAGCTGTT 59.100 52.381 0.00 0.00 0.00 3.16
4699 4830 1.203137 TGTGTAGTGTAGGGGAGCTGT 60.203 52.381 0.00 0.00 0.00 4.40
4700 4831 1.557099 TGTGTAGTGTAGGGGAGCTG 58.443 55.000 0.00 0.00 0.00 4.24
4701 4832 2.302157 GTTTGTGTAGTGTAGGGGAGCT 59.698 50.000 0.00 0.00 0.00 4.09
4702 4833 2.038033 TGTTTGTGTAGTGTAGGGGAGC 59.962 50.000 0.00 0.00 0.00 4.70
4703 4834 3.556423 GGTGTTTGTGTAGTGTAGGGGAG 60.556 52.174 0.00 0.00 0.00 4.30
4704 4835 2.369532 GGTGTTTGTGTAGTGTAGGGGA 59.630 50.000 0.00 0.00 0.00 4.81
4705 4836 2.370849 AGGTGTTTGTGTAGTGTAGGGG 59.629 50.000 0.00 0.00 0.00 4.79
4706 4837 3.764237 AGGTGTTTGTGTAGTGTAGGG 57.236 47.619 0.00 0.00 0.00 3.53
4707 4838 4.562143 GGGTAGGTGTTTGTGTAGTGTAGG 60.562 50.000 0.00 0.00 0.00 3.18
4708 4839 4.282703 AGGGTAGGTGTTTGTGTAGTGTAG 59.717 45.833 0.00 0.00 0.00 2.74
4709 4840 4.225573 AGGGTAGGTGTTTGTGTAGTGTA 58.774 43.478 0.00 0.00 0.00 2.90
4710 4841 3.043418 AGGGTAGGTGTTTGTGTAGTGT 58.957 45.455 0.00 0.00 0.00 3.55
4711 4842 3.764237 AGGGTAGGTGTTTGTGTAGTG 57.236 47.619 0.00 0.00 0.00 2.74
4712 4843 3.580022 GGTAGGGTAGGTGTTTGTGTAGT 59.420 47.826 0.00 0.00 0.00 2.73
4713 4844 3.055602 GGGTAGGGTAGGTGTTTGTGTAG 60.056 52.174 0.00 0.00 0.00 2.74
4714 4845 2.905736 GGGTAGGGTAGGTGTTTGTGTA 59.094 50.000 0.00 0.00 0.00 2.90
4715 4846 1.701292 GGGTAGGGTAGGTGTTTGTGT 59.299 52.381 0.00 0.00 0.00 3.72
4716 4847 1.700739 TGGGTAGGGTAGGTGTTTGTG 59.299 52.381 0.00 0.00 0.00 3.33
4717 4848 2.121478 TGGGTAGGGTAGGTGTTTGT 57.879 50.000 0.00 0.00 0.00 2.83
4718 4849 2.374170 ACTTGGGTAGGGTAGGTGTTTG 59.626 50.000 0.00 0.00 0.00 2.93
4719 4850 2.709966 ACTTGGGTAGGGTAGGTGTTT 58.290 47.619 0.00 0.00 0.00 2.83
4720 4851 2.428181 ACTTGGGTAGGGTAGGTGTT 57.572 50.000 0.00 0.00 0.00 3.32
4721 4852 2.428181 AACTTGGGTAGGGTAGGTGT 57.572 50.000 0.00 0.00 0.00 4.16
4722 4853 3.801307 AAAACTTGGGTAGGGTAGGTG 57.199 47.619 0.00 0.00 0.00 4.00
4723 4854 4.664536 TGTAAAAACTTGGGTAGGGTAGGT 59.335 41.667 0.00 0.00 0.00 3.08
4724 4855 5.013391 TCTGTAAAAACTTGGGTAGGGTAGG 59.987 44.000 0.00 0.00 0.00 3.18
4725 4856 6.117975 TCTGTAAAAACTTGGGTAGGGTAG 57.882 41.667 0.00 0.00 0.00 3.18
4726 4857 6.272792 TCATCTGTAAAAACTTGGGTAGGGTA 59.727 38.462 0.00 0.00 0.00 3.69
4727 4858 5.073965 TCATCTGTAAAAACTTGGGTAGGGT 59.926 40.000 0.00 0.00 0.00 4.34
4728 4859 5.566469 TCATCTGTAAAAACTTGGGTAGGG 58.434 41.667 0.00 0.00 0.00 3.53
4729 4860 6.151144 CCTTCATCTGTAAAAACTTGGGTAGG 59.849 42.308 0.00 0.00 0.00 3.18
4730 4861 6.940298 TCCTTCATCTGTAAAAACTTGGGTAG 59.060 38.462 0.00 0.00 0.00 3.18
4731 4862 6.713450 GTCCTTCATCTGTAAAAACTTGGGTA 59.287 38.462 0.00 0.00 0.00 3.69
4732 4863 5.535030 GTCCTTCATCTGTAAAAACTTGGGT 59.465 40.000 0.00 0.00 0.00 4.51
4733 4864 5.334879 CGTCCTTCATCTGTAAAAACTTGGG 60.335 44.000 0.00 0.00 0.00 4.12
4734 4865 5.689819 CGTCCTTCATCTGTAAAAACTTGG 58.310 41.667 0.00 0.00 0.00 3.61
4735 4866 5.147162 GCGTCCTTCATCTGTAAAAACTTG 58.853 41.667 0.00 0.00 0.00 3.16
4736 4867 4.215613 GGCGTCCTTCATCTGTAAAAACTT 59.784 41.667 0.00 0.00 0.00 2.66
4737 4868 3.751698 GGCGTCCTTCATCTGTAAAAACT 59.248 43.478 0.00 0.00 0.00 2.66
4738 4869 3.500680 TGGCGTCCTTCATCTGTAAAAAC 59.499 43.478 0.00 0.00 0.00 2.43
4739 4870 3.745799 TGGCGTCCTTCATCTGTAAAAA 58.254 40.909 0.00 0.00 0.00 1.94
4740 4871 3.410631 TGGCGTCCTTCATCTGTAAAA 57.589 42.857 0.00 0.00 0.00 1.52
4741 4872 3.334691 CTTGGCGTCCTTCATCTGTAAA 58.665 45.455 0.00 0.00 0.00 2.01
4742 4873 2.935238 GCTTGGCGTCCTTCATCTGTAA 60.935 50.000 0.00 0.00 0.00 2.41
4743 4874 1.405526 GCTTGGCGTCCTTCATCTGTA 60.406 52.381 0.00 0.00 0.00 2.74
4744 4875 0.674895 GCTTGGCGTCCTTCATCTGT 60.675 55.000 0.00 0.00 0.00 3.41
4745 4876 1.372087 GGCTTGGCGTCCTTCATCTG 61.372 60.000 0.00 0.00 0.00 2.90
4746 4877 1.078143 GGCTTGGCGTCCTTCATCT 60.078 57.895 0.00 0.00 0.00 2.90
4747 4878 1.377202 TGGCTTGGCGTCCTTCATC 60.377 57.895 0.00 0.00 0.00 2.92
4748 4879 1.675641 GTGGCTTGGCGTCCTTCAT 60.676 57.895 0.00 0.00 0.00 2.57
4749 4880 2.281484 GTGGCTTGGCGTCCTTCA 60.281 61.111 0.00 0.00 0.00 3.02
4750 4881 2.281484 TGTGGCTTGGCGTCCTTC 60.281 61.111 0.00 0.00 0.00 3.46
4751 4882 2.594592 GTGTGGCTTGGCGTCCTT 60.595 61.111 0.00 0.00 0.00 3.36
4752 4883 4.988598 CGTGTGGCTTGGCGTCCT 62.989 66.667 0.00 0.00 0.00 3.85
4754 4885 3.712881 GACGTGTGGCTTGGCGTC 61.713 66.667 0.00 0.00 44.93 5.19
4757 4888 2.742372 ATCGACGTGTGGCTTGGC 60.742 61.111 0.00 0.00 0.00 4.52
4758 4889 1.667830 ACATCGACGTGTGGCTTGG 60.668 57.895 0.00 0.00 0.00 3.61
4759 4890 1.492873 CACATCGACGTGTGGCTTG 59.507 57.895 17.39 0.00 44.41 4.01
4760 4891 3.951332 CACATCGACGTGTGGCTT 58.049 55.556 17.39 0.00 44.41 4.35
4765 4896 1.529152 TAGTGGGCACATCGACGTGT 61.529 55.000 13.75 0.00 39.19 4.49
4766 4897 0.179111 ATAGTGGGCACATCGACGTG 60.179 55.000 7.37 7.37 40.00 4.49
4767 4898 0.102481 GATAGTGGGCACATCGACGT 59.898 55.000 0.00 0.00 0.00 4.34
4768 4899 0.102300 TGATAGTGGGCACATCGACG 59.898 55.000 0.00 0.00 0.00 5.12
4769 4900 2.408050 GATGATAGTGGGCACATCGAC 58.592 52.381 0.00 0.00 31.74 4.20
4770 4901 1.344438 GGATGATAGTGGGCACATCGA 59.656 52.381 0.00 0.00 39.66 3.59
4771 4902 1.800805 GGATGATAGTGGGCACATCG 58.199 55.000 0.00 0.00 39.66 3.84
4772 4903 1.609061 CCGGATGATAGTGGGCACATC 60.609 57.143 0.00 0.00 38.53 3.06
4773 4904 0.397941 CCGGATGATAGTGGGCACAT 59.602 55.000 0.00 0.00 0.00 3.21
4774 4905 0.689412 TCCGGATGATAGTGGGCACA 60.689 55.000 0.00 0.00 0.00 4.57
4775 4906 0.034059 CTCCGGATGATAGTGGGCAC 59.966 60.000 3.57 0.00 0.00 5.01
4776 4907 1.121407 CCTCCGGATGATAGTGGGCA 61.121 60.000 3.57 0.00 0.00 5.36
4777 4908 1.674057 CCTCCGGATGATAGTGGGC 59.326 63.158 3.57 0.00 0.00 5.36
4778 4909 0.178932 TCCCTCCGGATGATAGTGGG 60.179 60.000 15.06 15.06 31.13 4.61
4779 4910 1.717032 TTCCCTCCGGATGATAGTGG 58.283 55.000 3.57 0.00 38.24 4.00
4780 4911 3.580458 AGATTTCCCTCCGGATGATAGTG 59.420 47.826 3.57 0.00 38.24 2.74
4781 4912 3.863086 AGATTTCCCTCCGGATGATAGT 58.137 45.455 3.57 0.00 38.24 2.12
4782 4913 4.040952 ACAAGATTTCCCTCCGGATGATAG 59.959 45.833 3.57 0.00 38.24 2.08
4783 4914 3.973973 ACAAGATTTCCCTCCGGATGATA 59.026 43.478 3.57 0.20 38.24 2.15
4784 4915 2.780010 ACAAGATTTCCCTCCGGATGAT 59.220 45.455 3.57 0.00 38.24 2.45
4785 4916 2.196595 ACAAGATTTCCCTCCGGATGA 58.803 47.619 3.57 1.32 38.24 2.92
4786 4917 2.717639 ACAAGATTTCCCTCCGGATG 57.282 50.000 3.57 0.81 38.24 3.51
4787 4918 5.104109 TGAATTACAAGATTTCCCTCCGGAT 60.104 40.000 3.57 0.00 38.24 4.18
4788 4919 4.226394 TGAATTACAAGATTTCCCTCCGGA 59.774 41.667 2.93 2.93 35.88 5.14
4789 4920 4.523083 TGAATTACAAGATTTCCCTCCGG 58.477 43.478 0.00 0.00 0.00 5.14
4790 4921 6.058183 AGATGAATTACAAGATTTCCCTCCG 58.942 40.000 0.00 0.00 0.00 4.63
4791 4922 6.488344 GGAGATGAATTACAAGATTTCCCTCC 59.512 42.308 0.00 0.00 33.72 4.30
4792 4923 6.203723 CGGAGATGAATTACAAGATTTCCCTC 59.796 42.308 0.00 0.00 0.00 4.30
4793 4924 6.058183 CGGAGATGAATTACAAGATTTCCCT 58.942 40.000 0.00 0.00 0.00 4.20
4794 4925 5.278022 GCGGAGATGAATTACAAGATTTCCC 60.278 44.000 0.00 0.00 0.00 3.97
4795 4926 5.529060 AGCGGAGATGAATTACAAGATTTCC 59.471 40.000 0.00 0.00 0.00 3.13
4796 4927 6.610741 AGCGGAGATGAATTACAAGATTTC 57.389 37.500 0.00 0.00 0.00 2.17
4797 4928 6.038714 GGAAGCGGAGATGAATTACAAGATTT 59.961 38.462 0.00 0.00 0.00 2.17
4798 4929 5.529060 GGAAGCGGAGATGAATTACAAGATT 59.471 40.000 0.00 0.00 0.00 2.40
4799 4930 5.059833 GGAAGCGGAGATGAATTACAAGAT 58.940 41.667 0.00 0.00 0.00 2.40
4800 4931 4.442706 GGAAGCGGAGATGAATTACAAGA 58.557 43.478 0.00 0.00 0.00 3.02
4801 4932 3.561725 GGGAAGCGGAGATGAATTACAAG 59.438 47.826 0.00 0.00 0.00 3.16
4802 4933 3.541632 GGGAAGCGGAGATGAATTACAA 58.458 45.455 0.00 0.00 0.00 2.41
4803 4934 2.158813 GGGGAAGCGGAGATGAATTACA 60.159 50.000 0.00 0.00 0.00 2.41
4804 4935 2.104963 AGGGGAAGCGGAGATGAATTAC 59.895 50.000 0.00 0.00 0.00 1.89
4805 4936 2.368875 GAGGGGAAGCGGAGATGAATTA 59.631 50.000 0.00 0.00 0.00 1.40
4817 4948 1.239347 GTGTTGTGAAGAGGGGAAGC 58.761 55.000 0.00 0.00 0.00 3.86
4846 4977 3.653344 TCAGTATCATTACTCATGGCGC 58.347 45.455 0.00 0.00 36.50 6.53
4847 4978 3.677121 GCTCAGTATCATTACTCATGGCG 59.323 47.826 0.00 0.00 36.50 5.69
4883 5014 3.810310 AGGAGAATGTTGGAGATCGAC 57.190 47.619 0.00 0.00 0.00 4.20
4890 5021 5.602145 ACAAATTTGGAAGGAGAATGTTGGA 59.398 36.000 21.74 0.00 0.00 3.53
4906 5037 6.307318 GTCTGCTCTTTCTATGCACAAATTTG 59.693 38.462 16.67 16.67 32.91 2.32
4907 5038 6.016024 TGTCTGCTCTTTCTATGCACAAATTT 60.016 34.615 0.00 0.00 32.91 1.82
4910 5041 4.388485 TGTCTGCTCTTTCTATGCACAAA 58.612 39.130 0.00 0.00 32.91 2.83
4942 5073 6.483640 GTCTCCTACTAGTAATGGCCAAAATG 59.516 42.308 10.96 0.40 0.00 2.32
4946 5077 4.616553 TGTCTCCTACTAGTAATGGCCAA 58.383 43.478 10.96 0.00 0.00 4.52
4947 5078 4.259933 TGTCTCCTACTAGTAATGGCCA 57.740 45.455 8.56 8.56 0.00 5.36
5001 5132 7.854557 TGTTGATTGTCTCATTCCTATTCAG 57.145 36.000 0.00 0.00 32.72 3.02
5008 5139 4.082125 ACCCTTGTTGATTGTCTCATTCC 58.918 43.478 0.00 0.00 32.72 3.01
5009 5140 6.817765 TTACCCTTGTTGATTGTCTCATTC 57.182 37.500 0.00 0.00 32.72 2.67
5012 5143 6.072728 CGATTTTACCCTTGTTGATTGTCTCA 60.073 38.462 0.00 0.00 0.00 3.27
5013 5144 6.072673 ACGATTTTACCCTTGTTGATTGTCTC 60.073 38.462 0.00 0.00 0.00 3.36
5014 5145 5.768164 ACGATTTTACCCTTGTTGATTGTCT 59.232 36.000 0.00 0.00 0.00 3.41
5015 5146 5.856455 CACGATTTTACCCTTGTTGATTGTC 59.144 40.000 0.00 0.00 0.00 3.18
5019 5150 4.700213 CCTCACGATTTTACCCTTGTTGAT 59.300 41.667 0.00 0.00 0.00 2.57
5020 5151 4.069304 CCTCACGATTTTACCCTTGTTGA 58.931 43.478 0.00 0.00 0.00 3.18
5021 5152 3.818773 ACCTCACGATTTTACCCTTGTTG 59.181 43.478 0.00 0.00 0.00 3.33
5022 5153 4.094830 ACCTCACGATTTTACCCTTGTT 57.905 40.909 0.00 0.00 0.00 2.83
5023 5154 3.782656 ACCTCACGATTTTACCCTTGT 57.217 42.857 0.00 0.00 0.00 3.16
5024 5155 3.190535 CCAACCTCACGATTTTACCCTTG 59.809 47.826 0.00 0.00 0.00 3.61
5025 5156 3.418047 CCAACCTCACGATTTTACCCTT 58.582 45.455 0.00 0.00 0.00 3.95
5026 5157 2.878526 GCCAACCTCACGATTTTACCCT 60.879 50.000 0.00 0.00 0.00 4.34
5037 5168 1.133025 CATCGAATTGGCCAACCTCAC 59.867 52.381 23.27 9.51 36.63 3.51
5039 5170 0.740737 CCATCGAATTGGCCAACCTC 59.259 55.000 23.27 18.99 36.63 3.85
5041 5172 0.455815 GACCATCGAATTGGCCAACC 59.544 55.000 23.27 14.88 40.68 3.77
5048 5179 3.825308 CACTGTTTGGACCATCGAATTG 58.175 45.455 0.00 0.00 0.00 2.32
5065 5196 1.179152 TTTGCATGCTCATCCCACTG 58.821 50.000 20.33 0.00 0.00 3.66
5066 5197 1.754803 CATTTGCATGCTCATCCCACT 59.245 47.619 20.33 0.00 0.00 4.00
5079 5210 4.501229 GGTGATGTTCTTGAACCATTTGCA 60.501 41.667 10.51 0.00 0.00 4.08
5080 5211 3.989817 GGTGATGTTCTTGAACCATTTGC 59.010 43.478 10.51 0.00 0.00 3.68
5088 5219 5.417266 TCTGTTTTGTGGTGATGTTCTTGAA 59.583 36.000 0.00 0.00 0.00 2.69
5091 5222 4.949856 AGTCTGTTTTGTGGTGATGTTCTT 59.050 37.500 0.00 0.00 0.00 2.52
5110 5241 2.564947 CTGCAAGTCCTACTTCCAGTCT 59.435 50.000 3.10 0.00 38.78 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.