Multiple sequence alignment - TraesCS6B01G151800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G151800 chr6B 100.000 7614 0 0 1 7614 155758658 155751045 0.000000e+00 14061.0
1 TraesCS6B01G151800 chr6B 84.746 118 15 3 4884 4999 155753389 155753273 1.740000e-21 115.0
2 TraesCS6B01G151800 chr6B 84.746 118 15 3 5270 5386 155753775 155753660 1.740000e-21 115.0
3 TraesCS6B01G151800 chr6A 96.833 1484 31 4 2591 4066 97806560 97805085 0.000000e+00 2466.0
4 TraesCS6B01G151800 chr6A 93.750 1040 31 11 1583 2592 97807636 97806601 0.000000e+00 1530.0
5 TraesCS6B01G151800 chr6A 95.223 942 20 7 5243 6177 97802524 97801601 0.000000e+00 1467.0
6 TraesCS6B01G151800 chr6A 97.826 782 14 1 4066 4847 97804972 97804194 0.000000e+00 1347.0
7 TraesCS6B01G151800 chr6A 91.513 919 49 15 718 1635 97808527 97807637 0.000000e+00 1238.0
8 TraesCS6B01G151800 chr6A 92.319 703 27 13 6584 7282 97801236 97800557 0.000000e+00 974.0
9 TraesCS6B01G151800 chr6A 98.370 368 6 0 6249 6616 97801603 97801236 0.000000e+00 647.0
10 TraesCS6B01G151800 chr6A 98.020 303 5 1 4848 5150 97804141 97803840 6.770000e-145 525.0
11 TraesCS6B01G151800 chr6A 96.512 86 3 0 5159 5244 97802772 97802687 7.960000e-30 143.0
12 TraesCS6B01G151800 chr6A 85.593 118 14 3 5270 5386 97804105 97803990 3.730000e-23 121.0
13 TraesCS6B01G151800 chr6A 84.483 116 15 3 4886 4999 97802495 97802381 2.250000e-20 111.0
14 TraesCS6B01G151800 chr6D 93.615 1253 57 14 6249 7496 81222552 81221318 0.000000e+00 1849.0
15 TraesCS6B01G151800 chr6D 95.392 1020 36 7 1583 2592 81227963 81226945 0.000000e+00 1613.0
16 TraesCS6B01G151800 chr6D 94.990 958 24 5 5243 6177 81223506 81222550 0.000000e+00 1482.0
17 TraesCS6B01G151800 chr6D 94.317 915 44 4 724 1635 81228873 81227964 0.000000e+00 1395.0
18 TraesCS6B01G151800 chr6D 96.539 809 21 2 3265 4066 81226931 81226123 0.000000e+00 1332.0
19 TraesCS6B01G151800 chr6D 94.584 794 29 8 4066 4847 81226010 81225219 0.000000e+00 1216.0
20 TraesCS6B01G151800 chr6D 96.599 294 9 1 4850 5143 81225164 81224872 3.190000e-133 486.0
21 TraesCS6B01G151800 chr6D 83.033 389 56 4 101 487 81229577 81229197 2.030000e-90 344.0
22 TraesCS6B01G151800 chr6D 92.547 161 10 2 5159 5319 81223660 81223502 5.940000e-56 230.0
23 TraesCS6B01G151800 chr6D 85.294 136 14 4 6896 7031 81212492 81212363 1.330000e-27 135.0
24 TraesCS6B01G151800 chr6D 86.441 118 13 3 5270 5386 81225130 81225015 8.020000e-25 126.0
25 TraesCS6B01G151800 chr6D 83.621 116 17 2 4885 4999 81223478 81223364 2.910000e-19 108.0
26 TraesCS6B01G151800 chr6D 87.097 62 7 1 1 62 81229798 81229738 1.370000e-07 69.4
27 TraesCS6B01G151800 chr2B 95.238 84 2 2 6168 6250 762916463 762916545 1.720000e-26 132.0
28 TraesCS6B01G151800 chr2B 95.000 80 3 1 6175 6253 762916545 762916466 2.880000e-24 124.0
29 TraesCS6B01G151800 chr2B 92.771 83 3 1 6172 6251 794694467 794694549 4.830000e-22 117.0
30 TraesCS6B01G151800 chr2B 92.771 83 3 1 6172 6251 794803368 794803450 4.830000e-22 117.0
31 TraesCS6B01G151800 chr2B 90.805 87 7 1 6168 6253 765569257 765569343 1.740000e-21 115.0
32 TraesCS6B01G151800 chr2B 89.888 89 5 2 6165 6250 794694557 794694470 2.250000e-20 111.0
33 TraesCS6B01G151800 chr5A 93.902 82 4 1 6172 6252 559038288 559038207 1.040000e-23 122.0
34 TraesCS6B01G151800 chr5A 94.737 76 4 0 6175 6250 559038209 559038284 1.340000e-22 119.0
35 TraesCS6B01G151800 chr2A 88.660 97 11 0 2480 2576 715965686 715965590 1.340000e-22 119.0
36 TraesCS6B01G151800 chr7B 90.698 86 8 0 6167 6252 701307862 701307777 1.740000e-21 115.0
37 TraesCS6B01G151800 chr5D 90.588 85 7 1 2483 2567 353482982 353483065 2.250000e-20 111.0
38 TraesCS6B01G151800 chr3D 89.535 86 9 0 2487 2572 373490487 373490402 8.080000e-20 110.0
39 TraesCS6B01G151800 chr3A 89.535 86 9 0 2487 2572 495014709 495014624 8.080000e-20 110.0
40 TraesCS6B01G151800 chr3A 88.095 84 10 0 2487 2570 74237227 74237144 4.860000e-17 100.0
41 TraesCS6B01G151800 chr4A 87.234 94 11 1 2480 2572 565436114 565436207 1.040000e-18 106.0
42 TraesCS6B01G151800 chr5B 85.393 89 13 0 2487 2575 548690997 548690909 8.140000e-15 93.5
43 TraesCS6B01G151800 chr1B 91.667 48 4 0 5668 5715 561722042 561722089 4.930000e-07 67.6
44 TraesCS6B01G151800 chr1B 100.000 29 0 0 3236 3264 540149890 540149918 4.000000e-03 54.7
45 TraesCS6B01G151800 chr1A 91.667 48 4 0 5668 5715 513118034 513118081 4.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G151800 chr6B 155751045 155758658 7613 True 14061.000000 14061 100.000000 1 7614 1 chr6B.!!$R1 7613
1 TraesCS6B01G151800 chr6A 97800557 97808527 7970 True 960.818182 2466 93.676545 718 7282 11 chr6A.!!$R1 6564
2 TraesCS6B01G151800 chr6D 81221318 81229798 8480 True 854.200000 1849 91.564583 1 7496 12 chr6D.!!$R2 7495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 565 0.179189 GTGGCTCGCTTTCCGATTTG 60.179 55.000 0.00 0.0 46.31 2.32 F
442 567 0.179189 GGCTCGCTTTCCGATTTGTG 60.179 55.000 0.00 0.0 46.31 3.33 F
1280 1541 0.307760 CCGCCGCATTCATCCTTTAC 59.692 55.000 0.00 0.0 0.00 2.01 F
2788 3177 0.108424 GCGAGCCATGACTCAGAAGT 60.108 55.000 9.84 0.0 38.88 3.01 F
3705 4101 1.001974 TGCATGCTTCCAGTAACGAGT 59.998 47.619 20.33 0.0 0.00 4.18 F
4383 4893 2.165437 CCCTCAGAAGTCAGCACTAGTC 59.835 54.545 0.00 0.0 30.14 2.59 F
5443 7438 0.107654 GGCCGCTTGATTGGTCTAGT 60.108 55.000 0.00 0.0 31.05 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1612 0.035317 AACATTCGACTGGAGCTGCA 59.965 50.000 7.99 7.99 0.00 4.41 R
2408 2738 0.179018 AGCACTCACACCTTCCAACC 60.179 55.000 0.00 0.00 0.00 3.77 R
2841 3230 0.877071 ACGATGCTGCAGTTTTGGAG 59.123 50.000 16.64 3.55 44.79 3.86 R
4233 4743 1.672737 GGTATGTTTGGCAAAGGCAGC 60.673 52.381 13.94 6.95 43.71 5.25 R
5147 5722 0.321122 GGGCATGATTCCTAGGAGCG 60.321 60.000 12.26 1.35 0.00 5.03 R
6241 8262 0.325296 TGCCCGAGATGTACTCCCTT 60.325 55.000 0.00 0.00 42.18 3.95 R
7425 9487 0.322456 GCCGCCCTTATATGCATGGA 60.322 55.000 10.16 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.705290 AACATTGATTTTTGACCCAGTTTATAC 57.295 29.630 0.00 0.00 0.00 1.47
48 49 7.287927 TGATTTTTGACCCAGTTTATACACCAA 59.712 33.333 0.00 0.00 0.00 3.67
49 50 7.604657 TTTTTGACCCAGTTTATACACCAAT 57.395 32.000 0.00 0.00 0.00 3.16
76 184 2.916702 TGGAGACGGATTCCATCATG 57.083 50.000 1.04 0.00 39.74 3.07
88 196 5.708697 GGATTCCATCATGCAGATCAACATA 59.291 40.000 0.00 0.00 33.72 2.29
89 197 6.377429 GGATTCCATCATGCAGATCAACATAT 59.623 38.462 0.00 0.00 33.72 1.78
91 199 4.457949 TCCATCATGCAGATCAACATATGC 59.542 41.667 1.58 0.00 45.90 3.14
92 200 4.380550 CCATCATGCAGATCAACATATGCC 60.381 45.833 1.58 0.00 45.23 4.40
93 201 3.151554 TCATGCAGATCAACATATGCCC 58.848 45.455 1.58 0.00 45.23 5.36
94 202 1.985473 TGCAGATCAACATATGCCCC 58.015 50.000 1.58 0.00 45.23 5.80
95 203 1.251251 GCAGATCAACATATGCCCCC 58.749 55.000 1.58 0.00 40.77 5.40
127 250 3.499737 CGCGCCGGAATTTCAGCT 61.500 61.111 5.05 0.00 0.00 4.24
134 257 0.523072 CGGAATTTCAGCTGTGGGTG 59.477 55.000 14.67 0.00 41.77 4.61
135 258 0.890683 GGAATTTCAGCTGTGGGTGG 59.109 55.000 14.67 0.00 40.89 4.61
136 259 0.890683 GAATTTCAGCTGTGGGTGGG 59.109 55.000 14.67 0.00 40.89 4.61
137 260 0.542702 AATTTCAGCTGTGGGTGGGG 60.543 55.000 14.67 0.00 40.89 4.96
138 261 2.445492 ATTTCAGCTGTGGGTGGGGG 62.445 60.000 14.67 0.00 40.89 5.40
155 278 2.308570 GGGGGCCCATTCTTTGATTTTT 59.691 45.455 26.86 0.00 35.81 1.94
177 300 0.462047 CATAACCAGCCACCTCGTCC 60.462 60.000 0.00 0.00 0.00 4.79
182 305 2.043248 AGCCACCTCGTCCCGTAT 60.043 61.111 0.00 0.00 0.00 3.06
215 339 0.753262 ACTCCCGTGGATGTAGCATC 59.247 55.000 0.80 0.80 0.00 3.91
218 342 1.412710 TCCCGTGGATGTAGCATCTTC 59.587 52.381 8.72 2.80 0.00 2.87
222 346 3.119291 CGTGGATGTAGCATCTTCTCAC 58.881 50.000 8.72 7.36 0.00 3.51
230 354 3.900966 AGCATCTTCTCACATAGTGCA 57.099 42.857 0.00 0.00 32.98 4.57
233 357 5.922053 AGCATCTTCTCACATAGTGCAATA 58.078 37.500 0.00 0.00 32.98 1.90
235 359 6.259608 AGCATCTTCTCACATAGTGCAATAAC 59.740 38.462 0.00 0.00 32.98 1.89
238 362 4.150897 TCTCACATAGTGCAATAACCCC 57.849 45.455 0.00 0.00 32.98 4.95
239 363 3.521531 TCTCACATAGTGCAATAACCCCA 59.478 43.478 0.00 0.00 32.98 4.96
245 369 2.091541 AGTGCAATAACCCCAATGACG 58.908 47.619 0.00 0.00 0.00 4.35
247 371 2.687935 GTGCAATAACCCCAATGACGAT 59.312 45.455 0.00 0.00 0.00 3.73
248 372 2.687425 TGCAATAACCCCAATGACGATG 59.313 45.455 0.00 0.00 0.00 3.84
256 380 1.612676 CCAATGACGATGATGGGCAT 58.387 50.000 0.00 0.00 40.77 4.40
261 385 3.044235 TGACGATGATGGGCATATGTC 57.956 47.619 4.29 0.58 40.34 3.06
276 400 6.071616 GGGCATATGTCTTTGAGGTGTTAAAA 60.072 38.462 7.36 0.00 0.00 1.52
277 401 6.806739 GGCATATGTCTTTGAGGTGTTAAAAC 59.193 38.462 4.29 0.00 0.00 2.43
288 412 2.296190 GGTGTTAAAACTGCTTGGAGGG 59.704 50.000 0.00 0.00 0.00 4.30
293 417 0.846693 AAACTGCTTGGAGGGACACT 59.153 50.000 0.00 0.00 0.00 3.55
307 431 3.118738 AGGGACACTCGGAATCATGTTAC 60.119 47.826 0.00 0.00 0.00 2.50
310 434 1.255342 CACTCGGAATCATGTTACGCG 59.745 52.381 3.53 3.53 0.00 6.01
311 435 0.229753 CTCGGAATCATGTTACGCGC 59.770 55.000 5.73 0.00 0.00 6.86
316 440 1.631144 AATCATGTTACGCGCGTGCA 61.631 50.000 42.78 36.79 42.97 4.57
317 441 2.291508 ATCATGTTACGCGCGTGCAC 62.292 55.000 42.78 35.28 42.97 4.57
318 442 3.784412 ATGTTACGCGCGTGCACC 61.784 61.111 42.78 26.53 42.97 5.01
338 462 2.496871 CCACAAATTGCCAAGGAGCATA 59.503 45.455 0.00 0.00 43.64 3.14
347 471 2.954318 GCCAAGGAGCATAACATGATGT 59.046 45.455 0.00 0.00 0.00 3.06
350 474 4.641541 CCAAGGAGCATAACATGATGTTCA 59.358 41.667 14.91 2.26 40.22 3.18
407 531 5.063691 TGTTCGTTTTCGCTTTCACTAAGAA 59.936 36.000 0.00 0.00 43.73 2.52
415 540 5.826586 TCGCTTTCACTAAGAAATGCAAAA 58.173 33.333 0.00 0.00 44.75 2.44
425 550 4.816786 AGAAATGCAAAACAAATGTGGC 57.183 36.364 0.00 0.00 0.00 5.01
440 565 0.179189 GTGGCTCGCTTTCCGATTTG 60.179 55.000 0.00 0.00 46.31 2.32
442 567 0.179189 GGCTCGCTTTCCGATTTGTG 60.179 55.000 0.00 0.00 46.31 3.33
444 569 0.516877 CTCGCTTTCCGATTTGTGCA 59.483 50.000 0.00 0.00 46.31 4.57
445 570 1.131126 CTCGCTTTCCGATTTGTGCAT 59.869 47.619 0.00 0.00 46.31 3.96
460 585 7.701924 CGATTTGTGCATCCTATTTGTATTTGT 59.298 33.333 0.00 0.00 0.00 2.83
469 594 7.127012 TCCTATTTGTATTTGTCCCATCGTA 57.873 36.000 0.00 0.00 0.00 3.43
527 783 7.837202 ACAAAAATTATTCGATACCGTCAGA 57.163 32.000 0.00 0.00 37.05 3.27
529 785 6.506464 AAAATTATTCGATACCGTCAGACG 57.494 37.500 16.50 16.50 42.11 4.18
530 786 2.675767 TATTCGATACCGTCAGACGC 57.324 50.000 18.02 2.80 40.91 5.19
539 795 1.205820 CGTCAGACGCGTCACTACA 59.794 57.895 37.85 15.68 33.65 2.74
560 816 9.965824 ACTACATGACTTTTATTGTTTCAAAGG 57.034 29.630 0.00 0.00 32.68 3.11
568 824 0.387565 TTGTTTCAAAGGAAGGCGGC 59.612 50.000 0.00 0.00 33.82 6.53
569 825 0.753479 TGTTTCAAAGGAAGGCGGCA 60.753 50.000 13.08 0.00 33.82 5.69
570 826 0.318699 GTTTCAAAGGAAGGCGGCAC 60.319 55.000 13.08 4.52 33.82 5.01
571 827 0.467290 TTTCAAAGGAAGGCGGCACT 60.467 50.000 13.08 3.02 33.82 4.40
572 828 0.889186 TTCAAAGGAAGGCGGCACTC 60.889 55.000 13.08 7.18 0.00 3.51
573 829 1.600636 CAAAGGAAGGCGGCACTCA 60.601 57.895 13.08 0.00 0.00 3.41
587 843 3.368013 CGGCACTCAACAAGGTGTCTATA 60.368 47.826 0.00 0.00 36.10 1.31
590 846 4.091509 GCACTCAACAAGGTGTCTATAACG 59.908 45.833 0.00 0.00 36.03 3.18
592 848 5.924254 CACTCAACAAGGTGTCTATAACGAA 59.076 40.000 0.00 0.00 0.00 3.85
602 858 4.565564 GTGTCTATAACGAAAACTCCGCAT 59.434 41.667 0.00 0.00 0.00 4.73
606 862 2.163818 AACGAAAACTCCGCATCTCA 57.836 45.000 0.00 0.00 0.00 3.27
613 869 4.918810 AAACTCCGCATCTCAAGTTTTT 57.081 36.364 0.00 0.00 38.45 1.94
619 875 3.119849 CCGCATCTCAAGTTTTTAGTGGG 60.120 47.826 0.00 0.00 0.00 4.61
620 876 3.502211 CGCATCTCAAGTTTTTAGTGGGT 59.498 43.478 0.00 0.00 0.00 4.51
622 878 4.762251 GCATCTCAAGTTTTTAGTGGGTCT 59.238 41.667 0.00 0.00 0.00 3.85
623 879 5.938125 GCATCTCAAGTTTTTAGTGGGTCTA 59.062 40.000 0.00 0.00 0.00 2.59
624 880 6.128254 GCATCTCAAGTTTTTAGTGGGTCTAC 60.128 42.308 0.00 0.00 0.00 2.59
625 881 5.535333 TCTCAAGTTTTTAGTGGGTCTACG 58.465 41.667 0.00 0.00 0.00 3.51
626 882 5.302568 TCTCAAGTTTTTAGTGGGTCTACGA 59.697 40.000 0.00 0.00 0.00 3.43
627 883 5.291971 TCAAGTTTTTAGTGGGTCTACGAC 58.708 41.667 0.00 0.00 0.00 4.34
628 884 5.069516 TCAAGTTTTTAGTGGGTCTACGACT 59.930 40.000 0.00 0.00 41.36 4.18
629 885 5.131594 AGTTTTTAGTGGGTCTACGACTC 57.868 43.478 0.00 0.00 39.09 3.36
630 886 4.831710 AGTTTTTAGTGGGTCTACGACTCT 59.168 41.667 0.00 0.00 39.09 3.24
631 887 4.778534 TTTTAGTGGGTCTACGACTCTG 57.221 45.455 0.00 0.00 39.09 3.35
632 888 3.430042 TTAGTGGGTCTACGACTCTGT 57.570 47.619 0.00 0.00 39.09 3.41
662 918 7.039011 AGTGTGTGATTCTACATTCTAGTTGGA 60.039 37.037 0.00 0.00 32.43 3.53
700 956 5.675684 AATTCAGTTTTGTGTTTCCCACT 57.324 34.783 0.00 0.00 44.81 4.00
701 957 4.448537 TTCAGTTTTGTGTTTCCCACTG 57.551 40.909 0.00 0.00 44.81 3.66
702 958 3.691575 TCAGTTTTGTGTTTCCCACTGA 58.308 40.909 0.00 0.00 44.81 3.41
703 959 4.082845 TCAGTTTTGTGTTTCCCACTGAA 58.917 39.130 0.00 0.00 44.81 3.02
704 960 4.082463 TCAGTTTTGTGTTTCCCACTGAAC 60.082 41.667 0.00 0.00 44.81 3.18
705 961 4.082245 CAGTTTTGTGTTTCCCACTGAACT 60.082 41.667 0.00 0.00 43.85 3.01
706 962 5.124776 CAGTTTTGTGTTTCCCACTGAACTA 59.875 40.000 11.05 0.00 42.54 2.24
707 963 5.891551 AGTTTTGTGTTTCCCACTGAACTAT 59.108 36.000 10.23 0.00 42.57 2.12
708 964 6.379988 AGTTTTGTGTTTCCCACTGAACTATT 59.620 34.615 10.23 0.00 42.57 1.73
709 965 6.783708 TTTGTGTTTCCCACTGAACTATTT 57.216 33.333 0.00 0.00 44.81 1.40
710 966 6.783708 TTGTGTTTCCCACTGAACTATTTT 57.216 33.333 0.00 0.00 44.81 1.82
711 967 6.783708 TGTGTTTCCCACTGAACTATTTTT 57.216 33.333 0.00 0.00 44.81 1.94
749 1005 7.011669 GTGTTTTACACTGAACTAGCCTTTGTA 59.988 37.037 2.82 0.00 45.27 2.41
759 1015 2.440539 AGCCTTTGTACAGACACTCG 57.559 50.000 0.00 0.00 34.48 4.18
761 1017 2.102588 AGCCTTTGTACAGACACTCGTT 59.897 45.455 0.00 0.00 34.48 3.85
823 1079 3.285215 CCGATCCCGATCCGACGT 61.285 66.667 0.00 0.00 38.22 4.34
1237 1494 4.467084 TGCTCGACGGAATGCCCC 62.467 66.667 0.00 0.00 0.00 5.80
1279 1540 0.817634 CCCGCCGCATTCATCCTTTA 60.818 55.000 0.00 0.00 0.00 1.85
1280 1541 0.307760 CCGCCGCATTCATCCTTTAC 59.692 55.000 0.00 0.00 0.00 2.01
1281 1542 1.299541 CGCCGCATTCATCCTTTACT 58.700 50.000 0.00 0.00 0.00 2.24
1330 1591 2.023414 TATGCGGTCTTAGGTGGGCG 62.023 60.000 0.00 0.00 0.00 6.13
1351 1612 4.993584 GCGTGAATGAACCATATGATCTCT 59.006 41.667 3.65 0.00 0.00 3.10
1362 1623 1.498264 ATGATCTCTGCAGCTCCAGT 58.502 50.000 9.47 0.00 34.47 4.00
1377 1638 3.609409 GCTCCAGTCGAATGTTTTTGGTC 60.609 47.826 12.41 0.00 0.00 4.02
1383 1644 4.401202 AGTCGAATGTTTTTGGTCCACTTT 59.599 37.500 0.00 0.00 0.00 2.66
1403 1664 3.910490 GTGGCCGCAGCAAAACCA 61.910 61.111 12.58 0.00 42.56 3.67
1415 1676 3.721035 AGCAAAACCAGCTGATGTTTTC 58.279 40.909 23.00 18.48 41.40 2.29
1450 1711 1.866063 GCTAAGCCGTTCTGGATCTCG 60.866 57.143 0.00 0.00 42.00 4.04
1577 1838 1.160137 GGCAGAATCTGTTGCGAACT 58.840 50.000 12.29 0.00 41.17 3.01
1591 1852 1.264288 GCGAACTCTGAACCTTGTTGG 59.736 52.381 0.00 0.00 42.93 3.77
1765 2087 2.849294 AACAGAGTCTTTCAGAGGCC 57.151 50.000 0.00 0.00 0.00 5.19
1861 2186 6.664515 TGGATTTACACGTGAAATTTCTGTC 58.335 36.000 25.01 10.70 0.00 3.51
1945 2274 5.368523 CCACCCTACTTGTATTCCTCCATAA 59.631 44.000 0.00 0.00 0.00 1.90
2345 2675 4.917415 GCTTGCGTTATTGTTTCTTCATGT 59.083 37.500 0.00 0.00 0.00 3.21
2408 2738 3.533606 TGGGTTTGTGGTGTTCAAATG 57.466 42.857 0.00 0.00 37.18 2.32
2420 2750 3.132111 GTGTTCAAATGGTTGGAAGGTGT 59.868 43.478 0.00 0.00 35.29 4.16
2421 2751 3.131933 TGTTCAAATGGTTGGAAGGTGTG 59.868 43.478 0.00 0.00 35.29 3.82
2438 2784 3.492656 GGTGTGAGTGCTTACTGAGTTGA 60.493 47.826 0.00 0.00 0.00 3.18
2452 2798 6.432607 ACTGAGTTGATCTTGTATTGCATG 57.567 37.500 0.00 0.00 0.00 4.06
2585 2931 5.535406 CGGAGGGAGTATCTGTTATTACTGT 59.465 44.000 0.00 0.00 33.73 3.55
2609 2997 2.491675 ACCGGGTCTCTTTTCCAATC 57.508 50.000 6.32 0.00 0.00 2.67
2622 3010 1.447838 CCAATCACGTGAGACCCCG 60.448 63.158 24.41 7.87 0.00 5.73
2665 3053 6.705381 GTCTAGCACATATCTCAAAGCATCTT 59.295 38.462 0.00 0.00 0.00 2.40
2688 3076 1.152649 CCCCAAAGATATCCCCAGCT 58.847 55.000 0.00 0.00 0.00 4.24
2749 3137 6.560304 AGCATCTTCTATCTCCTTAATCCCAA 59.440 38.462 0.00 0.00 0.00 4.12
2787 3176 0.175302 AGCGAGCCATGACTCAGAAG 59.825 55.000 9.84 0.00 36.42 2.85
2788 3177 0.108424 GCGAGCCATGACTCAGAAGT 60.108 55.000 9.84 0.00 38.88 3.01
2823 3212 2.308570 TCAATTGGTGATGGCTACTGGT 59.691 45.455 5.42 0.00 0.00 4.00
2836 3225 2.224305 GCTACTGGTGAACCACTTCTGT 60.224 50.000 0.00 0.00 42.01 3.41
2841 3230 4.058817 CTGGTGAACCACTTCTGTTCTAC 58.941 47.826 0.00 2.32 42.01 2.59
2851 3240 5.237344 CCACTTCTGTTCTACTCCAAAACTG 59.763 44.000 0.00 0.00 0.00 3.16
2907 3296 7.402054 TGTTCTTTTATCCTTAGCCATCTTCA 58.598 34.615 0.00 0.00 0.00 3.02
2993 3382 4.398358 ACTGCAGAGATGTGATCAAAATGG 59.602 41.667 23.35 0.00 0.00 3.16
2999 3388 2.676632 TGTGATCAAAATGGCATGCC 57.323 45.000 30.54 30.54 0.00 4.40
3135 3524 1.961277 GATAGACATTGCCGGCCGG 60.961 63.158 40.26 40.26 38.57 6.13
3154 3543 2.460669 GGTGGGAATTTGGCAGAGATT 58.539 47.619 0.00 0.00 0.00 2.40
3196 3585 1.962807 CTTTGAGATGGGTGCCAAACA 59.037 47.619 0.00 0.00 36.95 2.83
3621 4017 5.053978 AGATCTTTCCTGACACCTTTGTT 57.946 39.130 0.00 0.00 35.47 2.83
3651 4047 3.128068 GGTTTTTGAGTATTAGGGGTGCG 59.872 47.826 0.00 0.00 0.00 5.34
3705 4101 1.001974 TGCATGCTTCCAGTAACGAGT 59.998 47.619 20.33 0.00 0.00 4.18
3839 4235 5.003804 ACTGCCGTTAAGAGTTGATCAAAT 58.996 37.500 10.35 9.35 0.00 2.32
4003 4399 8.094798 TGTGGCTTAGTACTTCAAATTAACAG 57.905 34.615 0.00 0.00 0.00 3.16
4233 4743 4.940046 ACACTCTTTATTCATCTGCAGGTG 59.060 41.667 21.48 21.48 0.00 4.00
4380 4890 2.225142 ACTCCCTCAGAAGTCAGCACTA 60.225 50.000 0.00 0.00 30.14 2.74
4383 4893 2.165437 CCCTCAGAAGTCAGCACTAGTC 59.835 54.545 0.00 0.00 30.14 2.59
4428 4938 4.240096 GTGCACAAAAATTCCAGAGGATG 58.760 43.478 13.17 0.00 0.00 3.51
4531 5041 2.171659 TGCTACTTGGTGACTGTTGGAA 59.828 45.455 0.00 0.00 0.00 3.53
4797 5320 2.224523 TGCTCCTTGGGTAAGTTGACTG 60.225 50.000 0.00 0.00 31.80 3.51
4798 5321 2.224548 GCTCCTTGGGTAAGTTGACTGT 60.225 50.000 0.00 0.00 31.80 3.55
4925 5500 5.533154 AGGACCTCTCATTACAGATAAGACG 59.467 44.000 0.00 0.00 0.00 4.18
5134 5709 9.726438 AACAGTTTATCTACTTGCATAGAGTTT 57.274 29.630 3.58 0.00 34.68 2.66
5147 5722 9.813080 CTTGCATAGAGTTTTTCAGTTTACTAC 57.187 33.333 0.00 0.00 0.00 2.73
5150 5725 7.148623 GCATAGAGTTTTTCAGTTTACTACGCT 60.149 37.037 0.00 0.00 0.00 5.07
5151 5726 6.766452 AGAGTTTTTCAGTTTACTACGCTC 57.234 37.500 0.00 0.00 0.00 5.03
5152 5727 5.695363 AGAGTTTTTCAGTTTACTACGCTCC 59.305 40.000 0.00 0.00 0.00 4.70
5153 5728 5.608449 AGTTTTTCAGTTTACTACGCTCCT 58.392 37.500 0.00 0.00 0.00 3.69
5154 5729 6.752168 AGTTTTTCAGTTTACTACGCTCCTA 58.248 36.000 0.00 0.00 0.00 2.94
5155 5730 6.867293 AGTTTTTCAGTTTACTACGCTCCTAG 59.133 38.462 0.00 0.00 0.00 3.02
5156 5731 4.978083 TTCAGTTTACTACGCTCCTAGG 57.022 45.455 0.82 0.82 0.00 3.02
5157 5732 4.226427 TCAGTTTACTACGCTCCTAGGA 57.774 45.455 11.98 11.98 0.00 2.94
5245 7076 8.131100 GTCATGTCCTCAATGGTAAAATGTATG 58.869 37.037 0.00 0.00 37.07 2.39
5443 7438 0.107654 GGCCGCTTGATTGGTCTAGT 60.108 55.000 0.00 0.00 31.05 2.57
5466 7462 5.518847 GTCATGCTGCGTCTTTAAGTATACA 59.481 40.000 5.50 0.00 0.00 2.29
5489 7485 2.971330 ACCCAAATGAGATTTGTGGCAA 59.029 40.909 7.96 0.00 46.22 4.52
5586 7585 3.611057 CGGGCGTATGTCCATACTTAGAC 60.611 52.174 6.36 2.92 41.18 2.59
5932 7953 1.083806 TTACTGCGAGCCTGCGAATG 61.084 55.000 0.00 0.00 37.81 2.67
5936 7957 1.153597 TGCGAGCCTGCGAATGTATG 61.154 55.000 0.00 0.00 37.81 2.39
6184 8205 8.118976 TGTTCTGTAATATAATACTCCCTCCG 57.881 38.462 0.00 0.00 0.00 4.63
6185 8206 7.727186 TGTTCTGTAATATAATACTCCCTCCGT 59.273 37.037 0.00 0.00 0.00 4.69
6186 8207 9.236006 GTTCTGTAATATAATACTCCCTCCGTA 57.764 37.037 0.00 0.00 0.00 4.02
6187 8208 9.812347 TTCTGTAATATAATACTCCCTCCGTAA 57.188 33.333 0.00 0.00 0.00 3.18
6188 8209 9.812347 TCTGTAATATAATACTCCCTCCGTAAA 57.188 33.333 0.00 0.00 0.00 2.01
6190 8211 9.812347 TGTAATATAATACTCCCTCCGTAAAGA 57.188 33.333 0.00 0.00 0.00 2.52
6199 8220 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
6200 8221 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
6201 8222 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
6202 8223 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
6203 8224 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
6204 8225 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
6205 8226 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
6206 8227 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
6207 8228 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
6208 8229 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
6245 8266 8.608844 ATGCTCTTATATTTCTTTACGAAGGG 57.391 34.615 0.00 0.00 33.56 3.95
6246 8267 7.788026 TGCTCTTATATTTCTTTACGAAGGGA 58.212 34.615 0.00 0.00 33.56 4.20
6247 8268 7.926555 TGCTCTTATATTTCTTTACGAAGGGAG 59.073 37.037 0.00 0.00 33.56 4.30
6248 8269 7.927092 GCTCTTATATTTCTTTACGAAGGGAGT 59.073 37.037 0.00 0.00 33.56 3.85
6307 8328 2.367241 GTTGTGGGGTAATGGTTGCTTT 59.633 45.455 0.00 0.00 0.00 3.51
6718 8771 4.686191 TTGCTTGGGACATGAACATTTT 57.314 36.364 0.00 0.00 39.30 1.82
6739 8792 2.592574 CGGCATGGCGGATCATGT 60.593 61.111 32.02 0.00 44.54 3.21
6825 8880 0.926293 CAACCCCATATGGTGACCCT 59.074 55.000 20.46 0.00 39.05 4.34
6922 8977 1.847737 ACCTCTCGGTGATAGGAGTCT 59.152 52.381 5.36 0.00 43.51 3.24
6977 9032 6.361433 TGAGGTTGAACATGACCTTTCTTAA 58.639 36.000 0.00 0.00 46.01 1.85
7060 9115 1.743091 GCCAGGATCTTGTCTCTGCAG 60.743 57.143 7.63 7.63 0.00 4.41
7078 9133 3.257375 TGCAGAGCAAGCAGAAATGAAAT 59.743 39.130 0.00 0.00 37.02 2.17
7130 9185 6.545666 TGATTTTCACTTTGAAGACCAGCTTA 59.454 34.615 0.00 0.00 37.70 3.09
7163 9218 5.215252 TCTTTTGACTGACCCAACTCTAG 57.785 43.478 0.00 0.00 0.00 2.43
7165 9220 5.836898 TCTTTTGACTGACCCAACTCTAGTA 59.163 40.000 0.00 0.00 0.00 1.82
7167 9222 5.723672 TTGACTGACCCAACTCTAGTAAG 57.276 43.478 0.00 0.00 0.00 2.34
7170 9225 5.709164 TGACTGACCCAACTCTAGTAAGTAC 59.291 44.000 0.00 0.00 0.00 2.73
7171 9226 5.890049 ACTGACCCAACTCTAGTAAGTACT 58.110 41.667 0.00 0.00 40.24 2.73
7172 9227 6.313324 ACTGACCCAACTCTAGTAAGTACTT 58.687 40.000 13.68 13.68 37.73 2.24
7173 9228 6.433716 ACTGACCCAACTCTAGTAAGTACTTC 59.566 42.308 12.39 4.24 37.73 3.01
7174 9229 5.713861 TGACCCAACTCTAGTAAGTACTTCC 59.286 44.000 12.39 0.00 37.73 3.46
7178 9233 6.038050 CCCAACTCTAGTAAGTACTTCCTACG 59.962 46.154 12.39 5.02 37.73 3.51
7202 9258 6.458615 CGTCTTCCATTGATTGCATGTCATAA 60.459 38.462 3.47 0.00 0.00 1.90
7208 9264 6.406065 CCATTGATTGCATGTCATAACAAGGA 60.406 38.462 3.47 0.00 39.30 3.36
7209 9265 6.778834 TTGATTGCATGTCATAACAAGGAT 57.221 33.333 3.47 0.00 39.30 3.24
7244 9300 2.646121 GCTGGCTGCCAACTAAACT 58.354 52.632 23.51 0.00 30.80 2.66
7283 9341 1.944709 ACGACGTCGATACATCATGGA 59.055 47.619 41.52 0.00 43.02 3.41
7288 9346 5.059343 CGACGTCGATACATCATGGATTTAC 59.941 44.000 33.35 0.00 43.02 2.01
7295 9353 7.865889 TCGATACATCATGGATTTACTGTGTAC 59.134 37.037 0.00 0.00 0.00 2.90
7305 9363 6.878923 TGGATTTACTGTGTACTGAATCCTTG 59.121 38.462 13.92 0.00 41.79 3.61
7307 9365 7.606456 GGATTTACTGTGTACTGAATCCTTGAA 59.394 37.037 8.37 0.00 39.44 2.69
7338 9397 4.502645 CGTACACATGATGATTAAGTGCGA 59.497 41.667 0.00 0.00 36.06 5.10
7374 9433 2.443632 TGGGACTGGAGTAGATCGAGAT 59.556 50.000 0.00 0.00 37.22 2.75
7375 9434 2.817258 GGGACTGGAGTAGATCGAGATG 59.183 54.545 0.00 0.00 37.22 2.90
7376 9435 2.817258 GGACTGGAGTAGATCGAGATGG 59.183 54.545 0.00 0.00 37.22 3.51
7411 9473 2.433318 GTCCGTCCTCTGCTGTGC 60.433 66.667 0.00 0.00 0.00 4.57
7423 9485 4.076244 CTGTGCAGCTTGAAGCCT 57.924 55.556 14.45 0.00 43.77 4.58
7425 9487 1.747709 CTGTGCAGCTTGAAGCCTAT 58.252 50.000 14.45 0.00 43.77 2.57
7426 9488 1.669779 CTGTGCAGCTTGAAGCCTATC 59.330 52.381 14.45 3.49 43.77 2.08
7427 9489 1.020437 GTGCAGCTTGAAGCCTATCC 58.980 55.000 14.45 0.00 43.77 2.59
7428 9490 0.620030 TGCAGCTTGAAGCCTATCCA 59.380 50.000 14.45 1.31 43.77 3.41
7429 9491 1.213678 TGCAGCTTGAAGCCTATCCAT 59.786 47.619 14.45 0.00 43.77 3.41
7433 9495 2.158505 AGCTTGAAGCCTATCCATGCAT 60.159 45.455 14.45 0.00 43.77 3.96
7434 9496 3.073503 AGCTTGAAGCCTATCCATGCATA 59.926 43.478 14.45 0.00 43.77 3.14
7435 9497 4.015084 GCTTGAAGCCTATCCATGCATAT 58.985 43.478 5.74 0.00 34.48 1.78
7436 9498 5.045359 AGCTTGAAGCCTATCCATGCATATA 60.045 40.000 14.45 0.00 43.77 0.86
7437 9499 5.649395 GCTTGAAGCCTATCCATGCATATAA 59.351 40.000 5.74 0.00 34.48 0.98
7438 9500 6.183360 GCTTGAAGCCTATCCATGCATATAAG 60.183 42.308 5.74 0.00 34.48 1.73
7439 9501 5.748402 TGAAGCCTATCCATGCATATAAGG 58.252 41.667 0.00 5.55 0.00 2.69
7441 9503 3.117738 AGCCTATCCATGCATATAAGGGC 60.118 47.826 18.40 18.40 36.51 5.19
7443 9505 2.425143 ATCCATGCATATAAGGGCGG 57.575 50.000 0.00 0.00 0.00 6.13
7444 9506 0.322456 TCCATGCATATAAGGGCGGC 60.322 55.000 0.00 0.00 0.00 6.53
7445 9507 1.647545 CCATGCATATAAGGGCGGCG 61.648 60.000 0.51 0.51 0.00 6.46
7446 9508 1.377202 ATGCATATAAGGGCGGCGG 60.377 57.895 9.78 0.00 0.00 6.13
7447 9509 2.032071 GCATATAAGGGCGGCGGT 59.968 61.111 9.78 0.00 0.00 5.68
7448 9510 1.294138 GCATATAAGGGCGGCGGTA 59.706 57.895 9.78 0.00 0.00 4.02
7449 9511 1.017701 GCATATAAGGGCGGCGGTAC 61.018 60.000 9.78 0.00 0.00 3.34
7473 9535 3.364249 GAGCGCGACGTCTCTTCGA 62.364 63.158 12.10 0.00 38.85 3.71
7496 9558 4.518970 ACTATCTTTGTCGCAAATTGTGGT 59.481 37.500 6.70 0.00 0.00 4.16
7497 9559 3.347958 TCTTTGTCGCAAATTGTGGTC 57.652 42.857 6.70 1.80 0.00 4.02
7498 9560 2.034053 TCTTTGTCGCAAATTGTGGTCC 59.966 45.455 6.70 0.00 0.00 4.46
7499 9561 1.393603 TTGTCGCAAATTGTGGTCCA 58.606 45.000 6.70 0.00 0.00 4.02
7500 9562 1.614996 TGTCGCAAATTGTGGTCCAT 58.385 45.000 6.70 0.00 0.00 3.41
7501 9563 1.269174 TGTCGCAAATTGTGGTCCATG 59.731 47.619 6.70 0.00 0.00 3.66
7502 9564 1.269448 GTCGCAAATTGTGGTCCATGT 59.731 47.619 6.70 0.00 0.00 3.21
7503 9565 1.269174 TCGCAAATTGTGGTCCATGTG 59.731 47.619 6.70 0.00 0.00 3.21
7504 9566 1.000385 CGCAAATTGTGGTCCATGTGT 60.000 47.619 0.00 0.00 0.00 3.72
7505 9567 2.545532 CGCAAATTGTGGTCCATGTGTT 60.546 45.455 0.00 0.00 0.00 3.32
7506 9568 3.059166 GCAAATTGTGGTCCATGTGTTC 58.941 45.455 0.00 0.00 0.00 3.18
7507 9569 3.243839 GCAAATTGTGGTCCATGTGTTCT 60.244 43.478 0.00 0.00 0.00 3.01
7508 9570 4.740334 GCAAATTGTGGTCCATGTGTTCTT 60.740 41.667 0.00 0.00 0.00 2.52
7509 9571 5.358922 CAAATTGTGGTCCATGTGTTCTTT 58.641 37.500 0.00 0.00 0.00 2.52
7510 9572 5.612725 AATTGTGGTCCATGTGTTCTTTT 57.387 34.783 0.00 0.00 0.00 2.27
7511 9573 4.383850 TTGTGGTCCATGTGTTCTTTTG 57.616 40.909 0.00 0.00 0.00 2.44
7512 9574 2.100584 TGTGGTCCATGTGTTCTTTTGC 59.899 45.455 0.00 0.00 0.00 3.68
7513 9575 1.336440 TGGTCCATGTGTTCTTTTGCG 59.664 47.619 0.00 0.00 0.00 4.85
7514 9576 1.606668 GGTCCATGTGTTCTTTTGCGA 59.393 47.619 0.00 0.00 0.00 5.10
7515 9577 2.034053 GGTCCATGTGTTCTTTTGCGAA 59.966 45.455 0.00 0.00 0.00 4.70
7516 9578 3.300009 GTCCATGTGTTCTTTTGCGAAG 58.700 45.455 0.00 0.00 0.00 3.79
7517 9579 3.003275 GTCCATGTGTTCTTTTGCGAAGA 59.997 43.478 0.00 0.00 0.00 2.87
7518 9580 3.629855 TCCATGTGTTCTTTTGCGAAGAA 59.370 39.130 10.11 10.11 34.20 2.52
7519 9581 4.097135 TCCATGTGTTCTTTTGCGAAGAAA 59.903 37.500 14.41 3.17 37.93 2.52
7520 9582 4.803088 CCATGTGTTCTTTTGCGAAGAAAA 59.197 37.500 14.41 8.45 37.93 2.29
7521 9583 5.276348 CCATGTGTTCTTTTGCGAAGAAAAC 60.276 40.000 20.59 20.59 42.22 2.43
7522 9584 5.054390 TGTGTTCTTTTGCGAAGAAAACT 57.946 34.783 24.52 0.00 42.31 2.66
7523 9585 5.465935 TGTGTTCTTTTGCGAAGAAAACTT 58.534 33.333 24.52 0.00 42.31 2.66
7524 9586 5.923684 TGTGTTCTTTTGCGAAGAAAACTTT 59.076 32.000 24.52 0.00 42.31 2.66
7525 9587 6.088883 TGTGTTCTTTTGCGAAGAAAACTTTC 59.911 34.615 24.52 11.49 42.31 2.62
7526 9588 6.088883 GTGTTCTTTTGCGAAGAAAACTTTCA 59.911 34.615 20.31 10.58 39.96 2.69
7527 9589 6.642950 TGTTCTTTTGCGAAGAAAACTTTCAA 59.357 30.769 14.41 0.00 37.93 2.69
7528 9590 7.330700 TGTTCTTTTGCGAAGAAAACTTTCAAT 59.669 29.630 14.41 0.00 37.93 2.57
7529 9591 7.449934 TCTTTTGCGAAGAAAACTTTCAATC 57.550 32.000 5.07 2.42 39.61 2.67
7530 9592 7.257722 TCTTTTGCGAAGAAAACTTTCAATCT 58.742 30.769 5.07 0.00 39.61 2.40
7531 9593 8.402472 TCTTTTGCGAAGAAAACTTTCAATCTA 58.598 29.630 5.07 0.00 39.61 1.98
7532 9594 9.185192 CTTTTGCGAAGAAAACTTTCAATCTAT 57.815 29.630 5.07 0.00 39.61 1.98
7533 9595 9.528018 TTTTGCGAAGAAAACTTTCAATCTATT 57.472 25.926 5.07 0.00 39.61 1.73
7534 9596 8.728088 TTGCGAAGAAAACTTTCAATCTATTC 57.272 30.769 5.07 0.00 39.61 1.75
7535 9597 7.870826 TGCGAAGAAAACTTTCAATCTATTCA 58.129 30.769 5.07 0.00 39.61 2.57
7536 9598 8.514594 TGCGAAGAAAACTTTCAATCTATTCAT 58.485 29.630 5.07 0.00 39.61 2.57
7537 9599 9.004146 GCGAAGAAAACTTTCAATCTATTCATC 57.996 33.333 5.07 0.00 39.61 2.92
7538 9600 9.203668 CGAAGAAAACTTTCAATCTATTCATCG 57.796 33.333 5.07 0.00 39.61 3.84
7541 9603 9.442047 AGAAAACTTTCAATCTATTCATCGACT 57.558 29.630 5.07 0.00 39.61 4.18
7542 9604 9.483062 GAAAACTTTCAATCTATTCATCGACTG 57.517 33.333 0.00 0.00 37.15 3.51
7543 9605 8.777865 AAACTTTCAATCTATTCATCGACTGA 57.222 30.769 0.00 0.00 0.00 3.41
7544 9606 8.417780 AACTTTCAATCTATTCATCGACTGAG 57.582 34.615 0.00 0.00 34.68 3.35
7545 9607 6.478344 ACTTTCAATCTATTCATCGACTGAGC 59.522 38.462 0.00 0.00 34.68 4.26
7546 9608 4.540824 TCAATCTATTCATCGACTGAGCG 58.459 43.478 0.00 0.00 34.68 5.03
7547 9609 4.036852 TCAATCTATTCATCGACTGAGCGT 59.963 41.667 0.00 0.00 34.68 5.07
7548 9610 3.610786 TCTATTCATCGACTGAGCGTC 57.389 47.619 0.00 0.00 39.33 5.19
7549 9611 3.206964 TCTATTCATCGACTGAGCGTCT 58.793 45.455 0.00 0.00 40.59 4.18
7550 9612 4.377897 TCTATTCATCGACTGAGCGTCTA 58.622 43.478 0.00 0.00 40.59 2.59
7551 9613 2.826979 TTCATCGACTGAGCGTCTAC 57.173 50.000 0.00 0.00 40.59 2.59
7552 9614 1.734163 TCATCGACTGAGCGTCTACA 58.266 50.000 0.00 0.00 40.59 2.74
7553 9615 1.666189 TCATCGACTGAGCGTCTACAG 59.334 52.381 0.00 0.00 40.59 2.74
7554 9616 1.018148 ATCGACTGAGCGTCTACAGG 58.982 55.000 0.00 0.00 40.59 4.00
7555 9617 0.321387 TCGACTGAGCGTCTACAGGT 60.321 55.000 0.00 0.00 40.59 4.00
7556 9618 0.179187 CGACTGAGCGTCTACAGGTG 60.179 60.000 0.00 0.00 40.59 4.00
7557 9619 1.166129 GACTGAGCGTCTACAGGTGA 58.834 55.000 0.00 0.00 39.61 4.02
7558 9620 1.746220 GACTGAGCGTCTACAGGTGAT 59.254 52.381 0.00 0.00 39.61 3.06
7559 9621 2.943690 GACTGAGCGTCTACAGGTGATA 59.056 50.000 0.00 0.00 39.61 2.15
7560 9622 3.353557 ACTGAGCGTCTACAGGTGATAA 58.646 45.455 0.00 0.00 38.30 1.75
7561 9623 3.378742 ACTGAGCGTCTACAGGTGATAAG 59.621 47.826 0.00 0.00 38.30 1.73
7562 9624 3.617284 TGAGCGTCTACAGGTGATAAGA 58.383 45.455 0.00 0.00 0.00 2.10
7563 9625 4.207955 TGAGCGTCTACAGGTGATAAGAT 58.792 43.478 0.00 0.00 0.00 2.40
7564 9626 4.036852 TGAGCGTCTACAGGTGATAAGATG 59.963 45.833 0.00 0.00 0.00 2.90
7565 9627 3.053455 GCGTCTACAGGTGATAAGATGC 58.947 50.000 0.00 0.00 42.04 3.91
7566 9628 3.643763 CGTCTACAGGTGATAAGATGCC 58.356 50.000 0.00 0.00 0.00 4.40
7567 9629 3.553096 CGTCTACAGGTGATAAGATGCCC 60.553 52.174 0.00 0.00 0.00 5.36
7568 9630 2.972713 TCTACAGGTGATAAGATGCCCC 59.027 50.000 0.00 0.00 0.00 5.80
7569 9631 0.469917 ACAGGTGATAAGATGCCCCG 59.530 55.000 0.00 0.00 0.00 5.73
7570 9632 0.886490 CAGGTGATAAGATGCCCCGC 60.886 60.000 0.00 0.00 0.00 6.13
7571 9633 1.600916 GGTGATAAGATGCCCCGCC 60.601 63.158 0.00 0.00 0.00 6.13
7572 9634 1.451936 GTGATAAGATGCCCCGCCT 59.548 57.895 0.00 0.00 0.00 5.52
7573 9635 0.886490 GTGATAAGATGCCCCGCCTG 60.886 60.000 0.00 0.00 0.00 4.85
7574 9636 1.344953 TGATAAGATGCCCCGCCTGT 61.345 55.000 0.00 0.00 0.00 4.00
7575 9637 0.886490 GATAAGATGCCCCGCCTGTG 60.886 60.000 0.00 0.00 0.00 3.66
7576 9638 2.343475 ATAAGATGCCCCGCCTGTGG 62.343 60.000 0.00 0.00 0.00 4.17
7587 9649 3.434319 CCTGTGGCATGCACCGTC 61.434 66.667 21.36 1.47 0.00 4.79
7588 9650 2.359107 CTGTGGCATGCACCGTCT 60.359 61.111 21.36 0.00 0.00 4.18
7589 9651 1.079197 CTGTGGCATGCACCGTCTA 60.079 57.895 21.36 0.00 0.00 2.59
7590 9652 0.673333 CTGTGGCATGCACCGTCTAA 60.673 55.000 21.36 0.00 0.00 2.10
7591 9653 0.953471 TGTGGCATGCACCGTCTAAC 60.953 55.000 21.36 4.75 0.00 2.34
7592 9654 0.953471 GTGGCATGCACCGTCTAACA 60.953 55.000 21.36 1.29 0.00 2.41
7593 9655 0.250510 TGGCATGCACCGTCTAACAA 60.251 50.000 21.36 0.00 0.00 2.83
7594 9656 0.878416 GGCATGCACCGTCTAACAAA 59.122 50.000 21.36 0.00 0.00 2.83
7595 9657 1.472480 GGCATGCACCGTCTAACAAAT 59.528 47.619 21.36 0.00 0.00 2.32
7596 9658 2.518949 GCATGCACCGTCTAACAAATG 58.481 47.619 14.21 0.00 0.00 2.32
7597 9659 2.731968 GCATGCACCGTCTAACAAATGG 60.732 50.000 14.21 0.00 0.00 3.16
7598 9660 2.552599 TGCACCGTCTAACAAATGGA 57.447 45.000 0.00 0.00 0.00 3.41
7599 9661 3.066291 TGCACCGTCTAACAAATGGAT 57.934 42.857 0.00 0.00 0.00 3.41
7600 9662 3.417101 TGCACCGTCTAACAAATGGATT 58.583 40.909 0.00 0.00 0.00 3.01
7601 9663 3.190327 TGCACCGTCTAACAAATGGATTG 59.810 43.478 0.00 0.00 44.95 2.67
7602 9664 3.758300 CACCGTCTAACAAATGGATTGC 58.242 45.455 0.00 0.00 43.13 3.56
7603 9665 3.440173 CACCGTCTAACAAATGGATTGCT 59.560 43.478 0.00 0.00 43.13 3.91
7604 9666 4.634004 CACCGTCTAACAAATGGATTGCTA 59.366 41.667 0.00 0.00 43.13 3.49
7605 9667 4.634443 ACCGTCTAACAAATGGATTGCTAC 59.366 41.667 0.00 0.00 43.13 3.58
7606 9668 4.876107 CCGTCTAACAAATGGATTGCTACT 59.124 41.667 0.00 0.00 43.13 2.57
7607 9669 5.220662 CCGTCTAACAAATGGATTGCTACTG 60.221 44.000 0.00 0.00 43.13 2.74
7608 9670 5.351465 CGTCTAACAAATGGATTGCTACTGT 59.649 40.000 0.00 0.00 43.13 3.55
7609 9671 6.455646 CGTCTAACAAATGGATTGCTACTGTC 60.456 42.308 0.00 0.00 43.13 3.51
7610 9672 6.371548 GTCTAACAAATGGATTGCTACTGTCA 59.628 38.462 0.00 0.00 43.13 3.58
7611 9673 6.939730 TCTAACAAATGGATTGCTACTGTCAA 59.060 34.615 0.00 0.00 43.13 3.18
7612 9674 6.594788 AACAAATGGATTGCTACTGTCAAT 57.405 33.333 0.00 0.00 43.13 2.57
7613 9675 6.594788 ACAAATGGATTGCTACTGTCAATT 57.405 33.333 0.00 0.00 43.13 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.801873 CCATTCTTTAATTGGTGTATAAACTGG 57.198 33.333 0.00 0.00 0.00 4.00
43 44 4.941263 TCCGTCTCCATTCTTTAATTGGTG 59.059 41.667 0.00 0.00 0.00 4.17
48 49 6.001449 TGGAATCCGTCTCCATTCTTTAAT 57.999 37.500 0.00 0.00 38.07 1.40
49 50 5.429681 TGGAATCCGTCTCCATTCTTTAA 57.570 39.130 0.00 0.00 38.07 1.52
62 63 2.105306 TGATCTGCATGATGGAATCCGT 59.895 45.455 0.00 0.00 44.73 4.69
63 64 2.774687 TGATCTGCATGATGGAATCCG 58.225 47.619 0.00 0.00 44.73 4.18
76 184 1.251251 GGGGGCATATGTTGATCTGC 58.749 55.000 4.29 0.00 32.23 4.26
111 234 2.100991 CAGCTGAAATTCCGGCGC 59.899 61.111 8.42 0.00 42.98 6.53
113 236 1.508088 CCACAGCTGAAATTCCGGC 59.492 57.895 23.35 0.00 38.68 6.13
116 239 0.890683 CCACCCACAGCTGAAATTCC 59.109 55.000 23.35 0.00 0.00 3.01
134 257 1.583556 AAATCAAAGAATGGGCCCCC 58.416 50.000 22.27 8.75 0.00 5.40
135 258 3.719268 AAAAATCAAAGAATGGGCCCC 57.281 42.857 22.27 3.22 0.00 5.80
155 278 0.251916 CGAGGTGGCTGGTTATGGAA 59.748 55.000 0.00 0.00 0.00 3.53
189 312 3.992943 ACATCCACGGGAGTTATGAAA 57.007 42.857 0.00 0.00 44.67 2.69
190 313 3.181469 GCTACATCCACGGGAGTTATGAA 60.181 47.826 0.00 0.00 44.67 2.57
191 314 2.364324 GCTACATCCACGGGAGTTATGA 59.636 50.000 0.00 0.00 44.67 2.15
193 316 2.394632 TGCTACATCCACGGGAGTTAT 58.605 47.619 0.00 0.00 44.67 1.89
200 324 2.101415 TGAGAAGATGCTACATCCACGG 59.899 50.000 4.00 0.00 0.00 4.94
201 325 3.119291 GTGAGAAGATGCTACATCCACG 58.881 50.000 4.00 0.00 0.00 4.94
206 330 5.163374 TGCACTATGTGAGAAGATGCTACAT 60.163 40.000 1.52 0.00 35.23 2.29
215 339 4.576463 GGGGTTATTGCACTATGTGAGAAG 59.424 45.833 1.52 0.00 35.23 2.85
218 342 3.884895 TGGGGTTATTGCACTATGTGAG 58.115 45.455 1.52 0.00 35.23 3.51
222 346 4.261155 CGTCATTGGGGTTATTGCACTATG 60.261 45.833 0.00 0.00 0.00 2.23
230 354 4.144297 CCATCATCGTCATTGGGGTTATT 58.856 43.478 0.00 0.00 0.00 1.40
233 357 1.410083 CCCATCATCGTCATTGGGGTT 60.410 52.381 7.94 0.00 44.29 4.11
235 359 3.025924 CCCATCATCGTCATTGGGG 57.974 57.895 7.94 0.00 44.29 4.96
238 362 3.754850 ACATATGCCCATCATCGTCATTG 59.245 43.478 1.58 0.00 36.63 2.82
239 363 4.005650 GACATATGCCCATCATCGTCATT 58.994 43.478 1.58 0.00 37.53 2.57
245 369 4.458295 CCTCAAAGACATATGCCCATCATC 59.542 45.833 1.58 0.00 36.63 2.92
247 371 3.202818 ACCTCAAAGACATATGCCCATCA 59.797 43.478 1.58 0.00 0.00 3.07
248 372 3.567164 CACCTCAAAGACATATGCCCATC 59.433 47.826 1.58 0.00 0.00 3.51
253 377 7.538678 CAGTTTTAACACCTCAAAGACATATGC 59.461 37.037 1.58 0.00 0.00 3.14
256 380 6.770785 AGCAGTTTTAACACCTCAAAGACATA 59.229 34.615 0.00 0.00 0.00 2.29
261 385 5.043248 CCAAGCAGTTTTAACACCTCAAAG 58.957 41.667 0.00 0.00 0.00 2.77
276 400 1.821061 CGAGTGTCCCTCCAAGCAGT 61.821 60.000 0.00 0.00 36.82 4.40
277 401 1.079543 CGAGTGTCCCTCCAAGCAG 60.080 63.158 0.00 0.00 36.82 4.24
288 412 2.281762 GCGTAACATGATTCCGAGTGTC 59.718 50.000 0.00 0.00 0.00 3.67
293 417 1.476235 CGCGCGTAACATGATTCCGA 61.476 55.000 24.19 0.00 0.00 4.55
307 431 4.681643 ATTTGTGGTGCACGCGCG 62.682 61.111 30.96 30.96 42.97 6.86
310 434 2.309501 GGCAATTTGTGGTGCACGC 61.310 57.895 11.45 6.93 37.14 5.34
311 435 0.529337 TTGGCAATTTGTGGTGCACG 60.529 50.000 11.45 0.00 37.14 5.34
316 440 0.681175 GCTCCTTGGCAATTTGTGGT 59.319 50.000 0.00 0.00 0.00 4.16
317 441 0.680618 TGCTCCTTGGCAATTTGTGG 59.319 50.000 0.00 0.00 39.43 4.17
318 442 2.754946 ATGCTCCTTGGCAATTTGTG 57.245 45.000 0.00 0.00 45.68 3.33
338 462 1.895131 GGTGCCCTTGAACATCATGTT 59.105 47.619 1.52 1.52 44.37 2.71
347 471 0.038166 GTGATCCAGGTGCCCTTGAA 59.962 55.000 0.00 0.00 29.02 2.69
350 474 0.706433 AATGTGATCCAGGTGCCCTT 59.294 50.000 0.00 0.00 0.00 3.95
407 531 2.801679 CGAGCCACATTTGTTTTGCATT 59.198 40.909 0.00 0.00 0.00 3.56
415 540 0.598065 GGAAAGCGAGCCACATTTGT 59.402 50.000 0.00 0.00 0.00 2.83
425 550 0.516877 TGCACAAATCGGAAAGCGAG 59.483 50.000 0.00 0.00 0.00 5.03
440 565 5.359576 TGGGACAAATACAAATAGGATGCAC 59.640 40.000 0.00 0.00 31.92 4.57
515 771 1.650536 GACGCGTCTGACGGTATCG 60.651 63.158 31.12 24.34 42.82 2.92
520 776 1.511464 GTAGTGACGCGTCTGACGG 60.511 63.158 36.27 20.99 42.82 4.79
524 780 1.260206 GTCATGTAGTGACGCGTCTG 58.740 55.000 36.27 25.47 46.99 3.51
525 781 3.696782 GTCATGTAGTGACGCGTCT 57.303 52.632 36.27 21.99 46.99 4.18
539 795 7.657354 GCCTTCCTTTGAAACAATAAAAGTCAT 59.343 33.333 0.00 0.00 30.52 3.06
550 806 0.753479 TGCCGCCTTCCTTTGAAACA 60.753 50.000 0.00 0.00 0.00 2.83
551 807 0.318699 GTGCCGCCTTCCTTTGAAAC 60.319 55.000 0.00 0.00 0.00 2.78
560 816 1.576421 CTTGTTGAGTGCCGCCTTC 59.424 57.895 0.00 0.00 0.00 3.46
568 824 5.466819 TCGTTATAGACACCTTGTTGAGTG 58.533 41.667 0.00 0.00 39.93 3.51
569 825 5.717078 TCGTTATAGACACCTTGTTGAGT 57.283 39.130 0.00 0.00 0.00 3.41
570 826 7.170998 AGTTTTCGTTATAGACACCTTGTTGAG 59.829 37.037 0.00 0.00 0.00 3.02
571 827 6.987992 AGTTTTCGTTATAGACACCTTGTTGA 59.012 34.615 0.00 0.00 0.00 3.18
572 828 7.186021 AGTTTTCGTTATAGACACCTTGTTG 57.814 36.000 0.00 0.00 0.00 3.33
573 829 6.426025 GGAGTTTTCGTTATAGACACCTTGTT 59.574 38.462 0.00 0.00 0.00 2.83
587 843 2.163818 TGAGATGCGGAGTTTTCGTT 57.836 45.000 0.00 0.00 0.00 3.85
590 846 4.489679 AAACTTGAGATGCGGAGTTTTC 57.510 40.909 0.00 0.00 38.73 2.29
592 848 4.918810 AAAAACTTGAGATGCGGAGTTT 57.081 36.364 0.00 0.00 42.36 2.66
602 858 5.302568 TCGTAGACCCACTAAAAACTTGAGA 59.697 40.000 0.00 0.00 32.49 3.27
628 884 4.340950 TGTAGAATCACACACTCACACAGA 59.659 41.667 0.00 0.00 0.00 3.41
629 885 4.620982 TGTAGAATCACACACTCACACAG 58.379 43.478 0.00 0.00 0.00 3.66
630 886 4.664150 TGTAGAATCACACACTCACACA 57.336 40.909 0.00 0.00 0.00 3.72
631 887 5.928839 AGAATGTAGAATCACACACTCACAC 59.071 40.000 0.74 0.00 0.00 3.82
632 888 6.101650 AGAATGTAGAATCACACACTCACA 57.898 37.500 0.74 0.00 0.00 3.58
730 986 4.344102 TCTGTACAAAGGCTAGTTCAGTGT 59.656 41.667 18.97 6.13 35.48 3.55
776 1032 7.360438 GCTTGACGAGATCATTACAAGTTCTTT 60.360 37.037 17.29 0.00 37.11 2.52
779 1035 5.220491 GGCTTGACGAGATCATTACAAGTTC 60.220 44.000 17.29 10.55 37.11 3.01
823 1079 3.387947 GGGTCGGGCTTTCTCGGA 61.388 66.667 0.00 0.00 0.00 4.55
846 1102 1.070289 ACCGACTCTTTTGTCTGGGTC 59.930 52.381 0.00 0.00 36.06 4.46
850 1106 2.320367 CGAGACCGACTCTTTTGTCTG 58.680 52.381 0.00 0.00 42.92 3.51
990 1247 2.034687 GCCTGCATGGTGGTGTCT 59.965 61.111 0.00 0.00 38.35 3.41
992 1249 4.684134 GGGCCTGCATGGTGGTGT 62.684 66.667 0.84 0.00 38.35 4.16
1212 1469 2.430382 TTCCGTCGAGCACCTTGTCC 62.430 60.000 0.00 0.00 0.00 4.02
1279 1540 2.766828 AGGCTAGGAGAAACGCATAAGT 59.233 45.455 0.00 0.00 0.00 2.24
1280 1541 3.126831 CAGGCTAGGAGAAACGCATAAG 58.873 50.000 0.00 0.00 0.00 1.73
1281 1542 2.500098 ACAGGCTAGGAGAAACGCATAA 59.500 45.455 0.00 0.00 0.00 1.90
1330 1591 5.761726 TGCAGAGATCATATGGTTCATTCAC 59.238 40.000 2.13 0.00 0.00 3.18
1351 1612 0.035317 AACATTCGACTGGAGCTGCA 59.965 50.000 7.99 7.99 0.00 4.41
1362 1623 4.993029 AAAGTGGACCAAAAACATTCGA 57.007 36.364 0.00 0.00 0.00 3.71
1383 1644 1.583986 GTTTTGCTGCGGCCACATA 59.416 52.632 16.57 0.00 37.74 2.29
1403 1664 2.416547 CGGATCAACGAAAACATCAGCT 59.583 45.455 0.00 0.00 35.47 4.24
1413 1674 2.602257 AGCATCATCGGATCAACGAA 57.398 45.000 0.00 0.00 46.92 3.85
1415 1676 2.156504 GCTTAGCATCATCGGATCAACG 59.843 50.000 0.00 0.00 0.00 4.10
1577 1838 2.627699 GCATTTCCCAACAAGGTTCAGA 59.372 45.455 0.00 0.00 34.66 3.27
1591 1852 1.064463 TCTGTGGAGGATGGCATTTCC 60.064 52.381 19.46 19.46 0.00 3.13
1945 2274 6.548622 ACATGCTTTAGTGCAATGGATCTTAT 59.451 34.615 0.00 0.00 46.61 1.73
2049 2378 0.517316 GTTCATCTGCACACCCGAAC 59.483 55.000 0.00 0.00 0.00 3.95
2242 2571 2.293677 TGACTTCAACAGAGTCTCCGAC 59.706 50.000 0.00 0.00 43.07 4.79
2245 2574 3.319405 TCAGTGACTTCAACAGAGTCTCC 59.681 47.826 0.00 0.00 43.07 3.71
2321 2651 4.829064 TGAAGAAACAATAACGCAAGCT 57.171 36.364 0.00 0.00 45.62 3.74
2345 2675 5.105797 CCAACTGGCAAGCATATTTTACAGA 60.106 40.000 0.00 0.00 0.00 3.41
2408 2738 0.179018 AGCACTCACACCTTCCAACC 60.179 55.000 0.00 0.00 0.00 3.77
2420 2750 5.221521 ACAAGATCAACTCAGTAAGCACTCA 60.222 40.000 0.00 0.00 30.46 3.41
2421 2751 5.233988 ACAAGATCAACTCAGTAAGCACTC 58.766 41.667 0.00 0.00 30.46 3.51
2438 2784 6.827251 ACATCAGAAGACATGCAATACAAGAT 59.173 34.615 0.00 0.00 0.00 2.40
2452 2798 6.791887 TCAGAATCACAAACATCAGAAGAC 57.208 37.500 0.00 0.00 0.00 3.01
2585 2931 2.225343 TGGAAAAGAGACCCGGTACCTA 60.225 50.000 10.90 0.00 0.00 3.08
2622 3010 1.278637 CACGTGTCGTTTTCTGGGC 59.721 57.895 7.58 0.00 38.32 5.36
2688 3076 3.252215 CCACGGTTTAAACAGATTGCTCA 59.748 43.478 22.77 0.00 0.00 4.26
2749 3137 4.268687 GCTGAAGCGCACACTAGT 57.731 55.556 11.47 0.00 0.00 2.57
2787 3176 3.751621 CAATTGAGCGATTGGTTCTGAC 58.248 45.455 0.00 0.00 34.20 3.51
2823 3212 3.964688 TGGAGTAGAACAGAAGTGGTTCA 59.035 43.478 7.87 0.00 45.45 3.18
2836 3225 3.207265 TGCTGCAGTTTTGGAGTAGAA 57.793 42.857 16.64 0.00 43.95 2.10
2841 3230 0.877071 ACGATGCTGCAGTTTTGGAG 59.123 50.000 16.64 3.55 44.79 3.86
2907 3296 4.159557 AGGCTGGATGGTTTTTGTACAAT 58.840 39.130 9.56 0.00 0.00 2.71
2967 3356 3.427161 TGATCACATCTCTGCAGTACG 57.573 47.619 14.67 3.87 0.00 3.67
3135 3524 5.659440 TTAAATCTCTGCCAAATTCCCAC 57.341 39.130 0.00 0.00 0.00 4.61
3139 3528 6.312180 CCAAGCTTTAAATCTCTGCCAAATTC 59.688 38.462 0.00 0.00 0.00 2.17
3154 3543 5.564550 AGCATCTTCTTCTCCAAGCTTTAA 58.435 37.500 0.00 0.00 0.00 1.52
3196 3585 1.604604 CCACCCAGAAAATGACACGT 58.395 50.000 0.00 0.00 0.00 4.49
3621 4017 7.832187 CCCCTAATACTCAAAAACCATGTAGAA 59.168 37.037 0.00 0.00 0.00 2.10
4233 4743 1.672737 GGTATGTTTGGCAAAGGCAGC 60.673 52.381 13.94 6.95 43.71 5.25
4380 4890 2.304221 TGCCCTACACACTACAGACT 57.696 50.000 0.00 0.00 0.00 3.24
4428 4938 7.723324 TGACTTACATGCCCTCTATAGTTTAC 58.277 38.462 0.00 0.00 0.00 2.01
4531 5041 3.409570 CATGCAATGCAGTATAGCTCCT 58.590 45.455 14.98 0.00 43.65 3.69
4727 5248 5.886960 ACTCATTCCATTTTTCTTCTCGG 57.113 39.130 0.00 0.00 0.00 4.63
4822 5345 5.250774 GGCACCCCAAGGATATAAGAATCTA 59.749 44.000 0.00 0.00 36.73 1.98
5109 5684 9.726438 AAAACTCTATGCAAGTAGATAAACTGT 57.274 29.630 0.00 0.00 30.75 3.55
5134 5709 5.012239 TCCTAGGAGCGTAGTAAACTGAAA 58.988 41.667 7.62 0.00 0.00 2.69
5147 5722 0.321122 GGGCATGATTCCTAGGAGCG 60.321 60.000 12.26 1.35 0.00 5.03
5150 5725 1.706866 CCATGGGCATGATTCCTAGGA 59.293 52.381 7.62 7.62 41.20 2.94
5151 5726 1.272313 CCCATGGGCATGATTCCTAGG 60.272 57.143 20.41 0.82 41.20 3.02
5152 5727 1.272313 CCCCATGGGCATGATTCCTAG 60.272 57.143 26.87 2.80 41.20 3.02
5153 5728 0.779358 CCCCATGGGCATGATTCCTA 59.221 55.000 26.87 0.00 41.20 2.94
5154 5729 1.545211 CCCCATGGGCATGATTCCT 59.455 57.895 26.87 0.00 41.20 3.36
5155 5730 4.203245 CCCCATGGGCATGATTCC 57.797 61.111 26.87 0.00 41.20 3.01
5265 7096 5.295045 TCCATGTTTGATCATCAATGACTCG 59.705 40.000 0.00 0.00 40.03 4.18
5268 7099 6.038356 GGTTCCATGTTTGATCATCAATGAC 58.962 40.000 0.00 0.00 40.03 3.06
5443 7438 5.518847 GTGTATACTTAAAGACGCAGCATGA 59.481 40.000 4.17 0.00 39.69 3.07
5815 7835 2.838736 AGATGAACAAACAGTCGCACT 58.161 42.857 0.00 0.00 0.00 4.40
5932 7953 4.439289 GCTTGATTGCCAGAGAAACCATAC 60.439 45.833 0.00 0.00 0.00 2.39
5936 7957 1.888512 TGCTTGATTGCCAGAGAAACC 59.111 47.619 0.00 0.00 0.00 3.27
6177 8198 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
6178 8199 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
6179 8200 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
6180 8201 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
6181 8202 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
6182 8203 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
6219 8240 9.057089 CCCTTCGTAAAGAAATATAAGAGCATT 57.943 33.333 0.00 0.00 38.57 3.56
6220 8241 8.429641 TCCCTTCGTAAAGAAATATAAGAGCAT 58.570 33.333 0.00 0.00 38.57 3.79
6221 8242 7.788026 TCCCTTCGTAAAGAAATATAAGAGCA 58.212 34.615 0.00 0.00 38.57 4.26
6222 8243 7.927092 ACTCCCTTCGTAAAGAAATATAAGAGC 59.073 37.037 0.00 0.00 38.57 4.09
6228 8249 8.925338 AGATGTACTCCCTTCGTAAAGAAATAT 58.075 33.333 0.00 0.00 38.57 1.28
6229 8250 8.302515 AGATGTACTCCCTTCGTAAAGAAATA 57.697 34.615 0.00 0.00 38.57 1.40
6230 8251 7.184067 AGATGTACTCCCTTCGTAAAGAAAT 57.816 36.000 0.00 0.00 38.57 2.17
6231 8252 6.600882 AGATGTACTCCCTTCGTAAAGAAA 57.399 37.500 0.00 0.00 38.57 2.52
6232 8253 5.163683 CGAGATGTACTCCCTTCGTAAAGAA 60.164 44.000 0.00 0.00 42.18 2.52
6233 8254 4.334759 CGAGATGTACTCCCTTCGTAAAGA 59.665 45.833 0.00 0.00 42.18 2.52
6234 8255 4.497674 CCGAGATGTACTCCCTTCGTAAAG 60.498 50.000 0.00 0.00 42.18 1.85
6235 8256 3.379372 CCGAGATGTACTCCCTTCGTAAA 59.621 47.826 0.00 0.00 42.18 2.01
6236 8257 2.947652 CCGAGATGTACTCCCTTCGTAA 59.052 50.000 0.00 0.00 42.18 3.18
6237 8258 2.569059 CCGAGATGTACTCCCTTCGTA 58.431 52.381 0.00 0.00 42.18 3.43
6238 8259 1.390565 CCGAGATGTACTCCCTTCGT 58.609 55.000 0.00 0.00 42.18 3.85
6239 8260 0.669077 CCCGAGATGTACTCCCTTCG 59.331 60.000 0.00 0.00 42.18 3.79
6240 8261 0.389757 GCCCGAGATGTACTCCCTTC 59.610 60.000 0.00 0.00 42.18 3.46
6241 8262 0.325296 TGCCCGAGATGTACTCCCTT 60.325 55.000 0.00 0.00 42.18 3.95
6242 8263 0.757188 CTGCCCGAGATGTACTCCCT 60.757 60.000 0.00 0.00 42.18 4.20
6243 8264 1.043673 ACTGCCCGAGATGTACTCCC 61.044 60.000 0.00 0.00 42.18 4.30
6244 8265 0.824759 AACTGCCCGAGATGTACTCC 59.175 55.000 0.00 0.00 42.18 3.85
6245 8266 2.673368 CAAAACTGCCCGAGATGTACTC 59.327 50.000 0.00 0.00 41.79 2.59
6246 8267 2.038557 ACAAAACTGCCCGAGATGTACT 59.961 45.455 0.00 0.00 0.00 2.73
6247 8268 2.415512 GACAAAACTGCCCGAGATGTAC 59.584 50.000 0.00 0.00 0.00 2.90
6248 8269 2.614481 GGACAAAACTGCCCGAGATGTA 60.614 50.000 0.00 0.00 0.00 2.29
6249 8270 1.523758 GACAAAACTGCCCGAGATGT 58.476 50.000 0.00 0.00 0.00 3.06
6250 8271 0.804989 GGACAAAACTGCCCGAGATG 59.195 55.000 0.00 0.00 0.00 2.90
6307 8328 2.334946 GGCGCAAGAGCAACCATGA 61.335 57.895 10.83 0.00 42.27 3.07
6389 8410 3.781965 TGACCATCCAGGAAATGAGATGA 59.218 43.478 0.00 0.00 41.22 2.92
6825 8880 4.201523 TGGGTACAGAGCAACGGA 57.798 55.556 0.00 0.00 0.00 4.69
6922 8977 2.429971 TGTTGATTTGAGCAGGCAAACA 59.570 40.909 0.00 0.00 40.23 2.83
6977 9032 8.755977 AGATGCATGGATAGAAGAAAACAAAAT 58.244 29.630 2.46 0.00 0.00 1.82
7060 9115 4.563061 ACCAATTTCATTTCTGCTTGCTC 58.437 39.130 0.00 0.00 0.00 4.26
7073 9128 6.209192 ACACATCAGCATAAAGACCAATTTCA 59.791 34.615 0.00 0.00 0.00 2.69
7078 9133 5.301551 ACAAACACATCAGCATAAAGACCAA 59.698 36.000 0.00 0.00 0.00 3.67
7130 9185 7.615365 TGGGTCAGTCAAAAGATAAGCAATAAT 59.385 33.333 0.00 0.00 0.00 1.28
7153 9208 6.038050 CGTAGGAAGTACTTACTAGAGTTGGG 59.962 46.154 25.13 7.51 36.72 4.12
7163 9218 5.886960 TGGAAGACGTAGGAAGTACTTAC 57.113 43.478 10.07 10.07 0.00 2.34
7165 9220 5.479375 TCAATGGAAGACGTAGGAAGTACTT 59.521 40.000 8.13 8.13 0.00 2.24
7167 9222 5.320549 TCAATGGAAGACGTAGGAAGTAC 57.679 43.478 0.00 0.00 0.00 2.73
7170 9225 4.034510 GCAATCAATGGAAGACGTAGGAAG 59.965 45.833 0.00 0.00 0.00 3.46
7171 9226 3.938963 GCAATCAATGGAAGACGTAGGAA 59.061 43.478 0.00 0.00 0.00 3.36
7172 9227 3.055458 TGCAATCAATGGAAGACGTAGGA 60.055 43.478 0.00 0.00 0.00 2.94
7173 9228 3.270027 TGCAATCAATGGAAGACGTAGG 58.730 45.455 0.00 0.00 0.00 3.18
7174 9229 4.333649 ACATGCAATCAATGGAAGACGTAG 59.666 41.667 0.00 0.00 30.96 3.51
7178 9233 4.707030 TGACATGCAATCAATGGAAGAC 57.293 40.909 1.68 0.00 30.96 3.01
7216 9272 2.202395 GCAGCCAGCCTTTCCAACA 61.202 57.895 0.00 0.00 37.23 3.33
7228 9284 1.345089 TCGTAGTTTAGTTGGCAGCCA 59.655 47.619 11.22 11.22 0.00 4.75
7283 9341 8.784043 GTTTCAAGGATTCAGTACACAGTAAAT 58.216 33.333 0.00 0.00 0.00 1.40
7288 9346 4.152402 CCGTTTCAAGGATTCAGTACACAG 59.848 45.833 0.00 0.00 0.00 3.66
7295 9353 2.668457 CGAGTCCGTTTCAAGGATTCAG 59.332 50.000 8.17 0.00 42.49 3.02
7318 9376 5.731406 GCAATCGCACTTAATCATCATGTGT 60.731 40.000 0.00 0.00 38.36 3.72
7319 9377 4.673761 GCAATCGCACTTAATCATCATGTG 59.326 41.667 0.00 0.00 38.36 3.21
7321 9379 4.851010 TGCAATCGCACTTAATCATCATG 58.149 39.130 0.00 0.00 45.36 3.07
7347 9406 1.229177 TACTCCAGTCCCAGCAGCA 60.229 57.895 0.00 0.00 0.00 4.41
7358 9417 2.166829 CCCCATCTCGATCTACTCCAG 58.833 57.143 0.00 0.00 0.00 3.86
7394 9453 2.433318 GCACAGCAGAGGACGGAC 60.433 66.667 0.00 0.00 0.00 4.79
7395 9454 2.917227 TGCACAGCAGAGGACGGA 60.917 61.111 0.00 0.00 33.32 4.69
7411 9473 1.607628 GCATGGATAGGCTTCAAGCTG 59.392 52.381 9.83 0.00 41.99 4.24
7415 9477 6.182627 CCTTATATGCATGGATAGGCTTCAA 58.817 40.000 10.16 0.17 34.05 2.69
7422 9484 3.470709 CCGCCCTTATATGCATGGATAG 58.529 50.000 10.16 0.98 0.00 2.08
7423 9485 2.421388 GCCGCCCTTATATGCATGGATA 60.421 50.000 10.16 9.55 0.00 2.59
7425 9487 0.322456 GCCGCCCTTATATGCATGGA 60.322 55.000 10.16 0.00 0.00 3.41
7426 9488 1.647545 CGCCGCCCTTATATGCATGG 61.648 60.000 10.16 2.08 0.00 3.66
7427 9489 1.647545 CCGCCGCCCTTATATGCATG 61.648 60.000 10.16 0.00 0.00 4.06
7428 9490 1.377202 CCGCCGCCCTTATATGCAT 60.377 57.895 3.79 3.79 0.00 3.96
7429 9491 1.473497 TACCGCCGCCCTTATATGCA 61.473 55.000 0.00 0.00 0.00 3.96
7433 9495 1.827789 ACGTACCGCCGCCCTTATA 60.828 57.895 0.00 0.00 0.00 0.98
7434 9496 3.149648 ACGTACCGCCGCCCTTAT 61.150 61.111 0.00 0.00 0.00 1.73
7435 9497 4.132441 CACGTACCGCCGCCCTTA 62.132 66.667 0.00 0.00 0.00 2.69
7441 9503 3.475774 GCTCAACACGTACCGCCG 61.476 66.667 0.00 0.00 0.00 6.46
7443 9505 4.130281 GCGCTCAACACGTACCGC 62.130 66.667 0.00 0.00 34.50 5.68
7444 9506 3.823421 CGCGCTCAACACGTACCG 61.823 66.667 5.56 0.00 0.00 4.02
7445 9507 2.429571 TCGCGCTCAACACGTACC 60.430 61.111 5.56 0.00 0.00 3.34
7446 9508 2.761354 GTCGCGCTCAACACGTAC 59.239 61.111 5.56 0.00 0.00 3.67
7447 9509 2.797850 CGTCGCGCTCAACACGTA 60.798 61.111 5.56 0.00 0.00 3.57
7448 9510 4.918129 ACGTCGCGCTCAACACGT 62.918 61.111 14.55 14.55 40.56 4.49
7449 9511 4.104633 GACGTCGCGCTCAACACG 62.105 66.667 13.29 13.29 38.24 4.49
7450 9512 2.708059 GAGACGTCGCGCTCAACAC 61.708 63.158 10.46 0.00 33.08 3.32
7451 9513 2.402282 AAGAGACGTCGCGCTCAACA 62.402 55.000 13.77 0.00 34.41 3.33
7452 9514 1.666446 GAAGAGACGTCGCGCTCAAC 61.666 60.000 13.77 0.00 34.41 3.18
7453 9515 1.442184 GAAGAGACGTCGCGCTCAA 60.442 57.895 13.77 0.00 34.41 3.02
7473 9535 4.518970 ACCACAATTTGCGACAAAGATAGT 59.481 37.500 10.06 4.52 0.00 2.12
7493 9555 1.336440 CGCAAAAGAACACATGGACCA 59.664 47.619 0.00 0.00 0.00 4.02
7496 9558 3.210227 TCTTCGCAAAAGAACACATGGA 58.790 40.909 0.00 0.00 0.00 3.41
7497 9559 3.624326 TCTTCGCAAAAGAACACATGG 57.376 42.857 0.00 0.00 0.00 3.66
7498 9560 5.516339 AGTTTTCTTCGCAAAAGAACACATG 59.484 36.000 20.94 0.00 38.65 3.21
7499 9561 5.650543 AGTTTTCTTCGCAAAAGAACACAT 58.349 33.333 20.94 10.00 38.65 3.21
7500 9562 5.054390 AGTTTTCTTCGCAAAAGAACACA 57.946 34.783 20.94 4.77 38.65 3.72
7501 9563 6.088883 TGAAAGTTTTCTTCGCAAAAGAACAC 59.911 34.615 15.16 15.16 39.48 3.32
7502 9564 6.153067 TGAAAGTTTTCTTCGCAAAAGAACA 58.847 32.000 10.03 2.83 39.48 3.18
7503 9565 6.626199 TGAAAGTTTTCTTCGCAAAAGAAC 57.374 33.333 10.03 2.70 39.48 3.01
7504 9566 7.759433 AGATTGAAAGTTTTCTTCGCAAAAGAA 59.241 29.630 7.08 7.08 39.48 2.52
7505 9567 7.257722 AGATTGAAAGTTTTCTTCGCAAAAGA 58.742 30.769 6.21 0.00 39.48 2.52
7506 9568 7.455331 AGATTGAAAGTTTTCTTCGCAAAAG 57.545 32.000 6.21 0.00 39.48 2.27
7507 9569 9.528018 AATAGATTGAAAGTTTTCTTCGCAAAA 57.472 25.926 6.21 0.00 39.48 2.44
7508 9570 9.180678 GAATAGATTGAAAGTTTTCTTCGCAAA 57.819 29.630 6.21 0.00 39.48 3.68
7509 9571 8.349245 TGAATAGATTGAAAGTTTTCTTCGCAA 58.651 29.630 6.21 0.00 39.48 4.85
7510 9572 7.870826 TGAATAGATTGAAAGTTTTCTTCGCA 58.129 30.769 6.21 0.00 39.48 5.10
7511 9573 8.902040 ATGAATAGATTGAAAGTTTTCTTCGC 57.098 30.769 6.21 0.00 39.48 4.70
7512 9574 9.203668 CGATGAATAGATTGAAAGTTTTCTTCG 57.796 33.333 6.21 0.00 39.48 3.79
7515 9577 9.442047 AGTCGATGAATAGATTGAAAGTTTTCT 57.558 29.630 6.21 0.00 38.02 2.52
7516 9578 9.483062 CAGTCGATGAATAGATTGAAAGTTTTC 57.517 33.333 0.00 0.00 37.69 2.29
7517 9579 9.219603 TCAGTCGATGAATAGATTGAAAGTTTT 57.780 29.630 0.00 0.00 34.02 2.43
7518 9580 8.777865 TCAGTCGATGAATAGATTGAAAGTTT 57.222 30.769 0.00 0.00 34.02 2.66
7519 9581 7.010923 GCTCAGTCGATGAATAGATTGAAAGTT 59.989 37.037 0.00 0.00 37.52 2.66
7520 9582 6.478344 GCTCAGTCGATGAATAGATTGAAAGT 59.522 38.462 0.00 0.00 37.52 2.66
7521 9583 6.345644 CGCTCAGTCGATGAATAGATTGAAAG 60.346 42.308 0.00 0.00 37.52 2.62
7522 9584 5.460091 CGCTCAGTCGATGAATAGATTGAAA 59.540 40.000 0.00 0.00 37.52 2.69
7523 9585 4.978580 CGCTCAGTCGATGAATAGATTGAA 59.021 41.667 0.00 0.00 37.52 2.69
7524 9586 4.036852 ACGCTCAGTCGATGAATAGATTGA 59.963 41.667 0.00 0.20 37.52 2.57
7525 9587 4.294232 ACGCTCAGTCGATGAATAGATTG 58.706 43.478 0.00 0.00 37.52 2.67
7526 9588 4.541779 GACGCTCAGTCGATGAATAGATT 58.458 43.478 0.00 0.00 40.43 2.40
7527 9589 4.153958 GACGCTCAGTCGATGAATAGAT 57.846 45.455 0.00 0.00 40.43 1.98
7528 9590 3.610786 GACGCTCAGTCGATGAATAGA 57.389 47.619 0.00 0.00 40.43 1.98
7539 9601 1.840737 ATCACCTGTAGACGCTCAGT 58.159 50.000 0.00 0.00 0.00 3.41
7540 9602 3.628032 TCTTATCACCTGTAGACGCTCAG 59.372 47.826 0.00 0.00 0.00 3.35
7541 9603 3.617284 TCTTATCACCTGTAGACGCTCA 58.383 45.455 0.00 0.00 0.00 4.26
7542 9604 4.541779 CATCTTATCACCTGTAGACGCTC 58.458 47.826 0.00 0.00 0.00 5.03
7543 9605 3.243569 GCATCTTATCACCTGTAGACGCT 60.244 47.826 0.00 0.00 0.00 5.07
7544 9606 3.053455 GCATCTTATCACCTGTAGACGC 58.947 50.000 0.00 0.00 0.00 5.19
7545 9607 3.553096 GGGCATCTTATCACCTGTAGACG 60.553 52.174 0.00 0.00 0.00 4.18
7546 9608 3.244249 GGGGCATCTTATCACCTGTAGAC 60.244 52.174 0.00 0.00 0.00 2.59
7547 9609 2.972713 GGGGCATCTTATCACCTGTAGA 59.027 50.000 0.00 0.00 0.00 2.59
7548 9610 2.289072 CGGGGCATCTTATCACCTGTAG 60.289 54.545 0.00 0.00 0.00 2.74
7549 9611 1.691976 CGGGGCATCTTATCACCTGTA 59.308 52.381 0.00 0.00 0.00 2.74
7550 9612 0.469917 CGGGGCATCTTATCACCTGT 59.530 55.000 0.00 0.00 0.00 4.00
7551 9613 0.886490 GCGGGGCATCTTATCACCTG 60.886 60.000 0.00 0.00 0.00 4.00
7552 9614 1.451936 GCGGGGCATCTTATCACCT 59.548 57.895 0.00 0.00 0.00 4.00
7553 9615 1.600916 GGCGGGGCATCTTATCACC 60.601 63.158 0.00 0.00 0.00 4.02
7554 9616 0.886490 CAGGCGGGGCATCTTATCAC 60.886 60.000 0.00 0.00 0.00 3.06
7555 9617 1.344953 ACAGGCGGGGCATCTTATCA 61.345 55.000 0.00 0.00 0.00 2.15
7556 9618 0.886490 CACAGGCGGGGCATCTTATC 60.886 60.000 0.00 0.00 0.00 1.75
7557 9619 1.149174 CACAGGCGGGGCATCTTAT 59.851 57.895 0.00 0.00 0.00 1.73
7558 9620 2.589540 CACAGGCGGGGCATCTTA 59.410 61.111 0.00 0.00 0.00 2.10
7559 9621 4.431131 CCACAGGCGGGGCATCTT 62.431 66.667 0.00 0.00 0.00 2.40
7570 9632 2.520465 TAGACGGTGCATGCCACAGG 62.520 60.000 16.68 11.12 46.50 4.00
7571 9633 0.673333 TTAGACGGTGCATGCCACAG 60.673 55.000 16.68 15.62 46.50 3.66
7572 9634 0.953471 GTTAGACGGTGCATGCCACA 60.953 55.000 16.68 0.00 46.50 4.17
7573 9635 0.953471 TGTTAGACGGTGCATGCCAC 60.953 55.000 16.68 13.06 43.90 5.01
7574 9636 0.250510 TTGTTAGACGGTGCATGCCA 60.251 50.000 16.68 0.00 0.00 4.92
7575 9637 0.878416 TTTGTTAGACGGTGCATGCC 59.122 50.000 16.68 6.42 0.00 4.40
7576 9638 2.518949 CATTTGTTAGACGGTGCATGC 58.481 47.619 11.82 11.82 0.00 4.06
7577 9639 2.746904 TCCATTTGTTAGACGGTGCATG 59.253 45.455 0.00 0.00 0.00 4.06
7578 9640 3.066291 TCCATTTGTTAGACGGTGCAT 57.934 42.857 0.00 0.00 0.00 3.96
7579 9641 2.552599 TCCATTTGTTAGACGGTGCA 57.447 45.000 0.00 0.00 0.00 4.57
7580 9642 3.758300 CAATCCATTTGTTAGACGGTGC 58.242 45.455 0.00 0.00 0.00 5.01
7581 9643 3.440173 AGCAATCCATTTGTTAGACGGTG 59.560 43.478 0.00 0.00 37.65 4.94
7582 9644 3.686016 AGCAATCCATTTGTTAGACGGT 58.314 40.909 0.00 0.00 37.65 4.83
7583 9645 4.876107 AGTAGCAATCCATTTGTTAGACGG 59.124 41.667 0.00 0.00 37.65 4.79
7584 9646 5.351465 ACAGTAGCAATCCATTTGTTAGACG 59.649 40.000 0.00 0.00 37.65 4.18
7585 9647 6.371548 TGACAGTAGCAATCCATTTGTTAGAC 59.628 38.462 0.00 0.00 37.65 2.59
7586 9648 6.472016 TGACAGTAGCAATCCATTTGTTAGA 58.528 36.000 0.00 0.00 37.65 2.10
7587 9649 6.741992 TGACAGTAGCAATCCATTTGTTAG 57.258 37.500 0.00 0.00 37.65 2.34
7588 9650 7.701539 ATTGACAGTAGCAATCCATTTGTTA 57.298 32.000 0.00 0.00 37.65 2.41
7589 9651 6.594788 ATTGACAGTAGCAATCCATTTGTT 57.405 33.333 0.00 0.00 37.65 2.83
7590 9652 6.594788 AATTGACAGTAGCAATCCATTTGT 57.405 33.333 0.00 0.00 37.65 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.