Multiple sequence alignment - TraesCS6B01G151700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G151700 chr6B 100.000 5004 0 0 1 5004 155553822 155548819 0.000000e+00 9241.0
1 TraesCS6B01G151700 chr6B 87.029 239 31 0 3953 4191 8396602 8396364 2.300000e-68 270.0
2 TraesCS6B01G151700 chr4D 96.308 3548 102 9 421 3958 123094994 123098522 0.000000e+00 5799.0
3 TraesCS6B01G151700 chr4D 85.938 320 26 4 66 385 122206626 122206326 1.740000e-84 324.0
4 TraesCS6B01G151700 chr4A 96.241 3379 110 8 421 3790 446624000 446620630 0.000000e+00 5520.0
5 TraesCS6B01G151700 chr4A 83.069 378 36 13 4572 4938 374700764 374701124 8.080000e-83 318.0
6 TraesCS6B01G151700 chr4A 87.755 147 11 3 236 382 448508709 448508848 1.110000e-36 165.0
7 TraesCS6B01G151700 chr4A 81.818 121 18 3 81 200 554560143 554560260 1.150000e-16 99.0
8 TraesCS6B01G151700 chr4A 100.000 30 0 0 4153 4182 374700282 374700311 7.000000e-04 56.5
9 TraesCS6B01G151700 chr1A 96.487 2277 73 4 421 2695 121045996 121048267 0.000000e+00 3755.0
10 TraesCS6B01G151700 chr1A 96.337 1283 43 3 2679 3958 121048427 121049708 0.000000e+00 2106.0
11 TraesCS6B01G151700 chr1A 89.086 733 68 7 4275 5004 568777749 568778472 0.000000e+00 900.0
12 TraesCS6B01G151700 chr7D 78.523 2193 416 39 1464 3639 550892232 550894386 0.000000e+00 1389.0
13 TraesCS6B01G151700 chr7D 72.543 2320 561 68 1465 3745 20332693 20334975 0.000000e+00 686.0
14 TraesCS6B01G151700 chr7D 84.694 490 42 16 4275 4757 312550052 312549589 4.570000e-125 459.0
15 TraesCS6B01G151700 chr7D 84.834 422 64 0 1013 1434 550891308 550891729 4.630000e-115 425.0
16 TraesCS6B01G151700 chr7D 74.483 968 222 23 1100 2054 20547470 20548425 3.630000e-106 396.0
17 TraesCS6B01G151700 chr3D 93.282 774 39 7 4243 5004 603675821 603675049 0.000000e+00 1129.0
18 TraesCS6B01G151700 chr3D 93.127 291 19 1 3959 4248 603676180 603675890 4.630000e-115 425.0
19 TraesCS6B01G151700 chr4B 95.853 627 24 2 1012 1637 187628729 187629354 0.000000e+00 1013.0
20 TraesCS6B01G151700 chr4B 91.830 612 34 6 421 1021 187620649 187621255 0.000000e+00 839.0
21 TraesCS6B01G151700 chr4B 86.798 356 45 2 64 419 610950744 610951097 3.630000e-106 396.0
22 TraesCS6B01G151700 chr4B 83.427 356 29 7 66 421 185241566 185241241 2.260000e-78 303.0
23 TraesCS6B01G151700 chr7A 73.926 2585 582 76 1100 3643 20980728 20983261 0.000000e+00 955.0
24 TraesCS6B01G151700 chr7A 91.192 193 14 3 4814 5004 680755932 680756123 4.970000e-65 259.0
25 TraesCS6B01G151700 chr7B 78.611 1440 275 30 2217 3639 595676851 595678274 0.000000e+00 922.0
26 TraesCS6B01G151700 chr7B 89.086 733 67 8 4275 5004 642086005 642085283 0.000000e+00 898.0
27 TraesCS6B01G151700 chr7B 82.167 886 155 3 1013 1897 595651199 595652082 0.000000e+00 758.0
28 TraesCS6B01G151700 chr7B 93.947 380 15 2 4633 5004 748672294 748671915 7.270000e-158 568.0
29 TraesCS6B01G151700 chr7B 91.667 384 20 3 4633 5004 724810897 724811280 5.740000e-144 521.0
30 TraesCS6B01G151700 chr7B 92.014 288 22 1 3962 4248 724810234 724810521 2.170000e-108 403.0
31 TraesCS6B01G151700 chr7B 90.446 314 19 6 4243 4546 724810586 724810898 2.170000e-108 403.0
32 TraesCS6B01G151700 chr7B 90.523 306 26 3 3945 4248 748672972 748672668 7.800000e-108 401.0
33 TraesCS6B01G151700 chr7B 89.490 314 19 3 4243 4546 748672602 748672293 7.860000e-103 385.0
34 TraesCS6B01G151700 chr5B 89.086 733 68 7 4275 5004 340635211 340634488 0.000000e+00 900.0
35 TraesCS6B01G151700 chr5B 84.746 413 59 3 11 421 262748778 262748368 1.300000e-110 411.0
36 TraesCS6B01G151700 chr5D 86.441 649 68 9 4308 4938 544812940 544813586 0.000000e+00 693.0
37 TraesCS6B01G151700 chr5D 89.744 507 44 6 4275 4779 411773406 411773906 4.220000e-180 641.0
38 TraesCS6B01G151700 chr5D 88.315 368 37 2 4284 4650 542755773 542756135 2.140000e-118 436.0
39 TraesCS6B01G151700 chr5D 85.036 421 51 9 5 420 515415392 515415805 7.750000e-113 418.0
40 TraesCS6B01G151700 chr5D 76.147 218 37 9 3959 4173 541588294 541588499 3.190000e-17 100.0
41 TraesCS6B01G151700 chr5D 74.312 218 41 9 3959 4173 261981766 261981971 1.490000e-10 78.7
42 TraesCS6B01G151700 chr5D 100.000 30 0 0 4153 4182 544811300 544811329 7.000000e-04 56.5
43 TraesCS6B01G151700 chr1B 97.462 394 9 1 3566 3958 173116512 173116905 0.000000e+00 671.0
44 TraesCS6B01G151700 chr1B 98.592 71 1 0 3491 3561 173115516 173115586 5.260000e-25 126.0
45 TraesCS6B01G151700 chr2B 85.956 413 55 3 9 420 683050015 683050425 5.950000e-119 438.0
46 TraesCS6B01G151700 chr2B 85.152 330 32 13 3958 4273 68177690 68177364 6.250000e-84 322.0
47 TraesCS6B01G151700 chr2B 88.889 180 15 3 4830 5004 68176774 68176595 3.030000e-52 217.0
48 TraesCS6B01G151700 chr6A 94.652 187 9 1 234 420 530624506 530624321 6.340000e-74 289.0
49 TraesCS6B01G151700 chrUn 91.667 72 4 2 3 73 84331910 84331980 1.150000e-16 99.0
50 TraesCS6B01G151700 chrUn 93.939 66 2 2 9 73 265279860 265279796 1.150000e-16 99.0
51 TraesCS6B01G151700 chr3B 87.324 71 9 0 3959 4029 754147208 754147278 1.150000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G151700 chr6B 155548819 155553822 5003 True 9241.000000 9241 100.000000 1 5004 1 chr6B.!!$R2 5003
1 TraesCS6B01G151700 chr4D 123094994 123098522 3528 False 5799.000000 5799 96.308000 421 3958 1 chr4D.!!$F1 3537
2 TraesCS6B01G151700 chr4A 446620630 446624000 3370 True 5520.000000 5520 96.241000 421 3790 1 chr4A.!!$R1 3369
3 TraesCS6B01G151700 chr1A 121045996 121049708 3712 False 2930.500000 3755 96.412000 421 3958 2 chr1A.!!$F2 3537
4 TraesCS6B01G151700 chr1A 568777749 568778472 723 False 900.000000 900 89.086000 4275 5004 1 chr1A.!!$F1 729
5 TraesCS6B01G151700 chr7D 550891308 550894386 3078 False 907.000000 1389 81.678500 1013 3639 2 chr7D.!!$F3 2626
6 TraesCS6B01G151700 chr7D 20332693 20334975 2282 False 686.000000 686 72.543000 1465 3745 1 chr7D.!!$F1 2280
7 TraesCS6B01G151700 chr7D 20547470 20548425 955 False 396.000000 396 74.483000 1100 2054 1 chr7D.!!$F2 954
8 TraesCS6B01G151700 chr3D 603675049 603676180 1131 True 777.000000 1129 93.204500 3959 5004 2 chr3D.!!$R1 1045
9 TraesCS6B01G151700 chr4B 187628729 187629354 625 False 1013.000000 1013 95.853000 1012 1637 1 chr4B.!!$F2 625
10 TraesCS6B01G151700 chr4B 187620649 187621255 606 False 839.000000 839 91.830000 421 1021 1 chr4B.!!$F1 600
11 TraesCS6B01G151700 chr7A 20980728 20983261 2533 False 955.000000 955 73.926000 1100 3643 1 chr7A.!!$F1 2543
12 TraesCS6B01G151700 chr7B 595676851 595678274 1423 False 922.000000 922 78.611000 2217 3639 1 chr7B.!!$F2 1422
13 TraesCS6B01G151700 chr7B 642085283 642086005 722 True 898.000000 898 89.086000 4275 5004 1 chr7B.!!$R1 729
14 TraesCS6B01G151700 chr7B 595651199 595652082 883 False 758.000000 758 82.167000 1013 1897 1 chr7B.!!$F1 884
15 TraesCS6B01G151700 chr7B 748671915 748672972 1057 True 451.333333 568 91.320000 3945 5004 3 chr7B.!!$R2 1059
16 TraesCS6B01G151700 chr7B 724810234 724811280 1046 False 442.333333 521 91.375667 3962 5004 3 chr7B.!!$F3 1042
17 TraesCS6B01G151700 chr5B 340634488 340635211 723 True 900.000000 900 89.086000 4275 5004 1 chr5B.!!$R2 729
18 TraesCS6B01G151700 chr5D 411773406 411773906 500 False 641.000000 641 89.744000 4275 4779 1 chr5D.!!$F2 504
19 TraesCS6B01G151700 chr5D 544811300 544813586 2286 False 374.750000 693 93.220500 4153 4938 2 chr5D.!!$F6 785
20 TraesCS6B01G151700 chr1B 173115516 173116905 1389 False 398.500000 671 98.027000 3491 3958 2 chr1B.!!$F1 467
21 TraesCS6B01G151700 chr2B 68176595 68177690 1095 True 269.500000 322 87.020500 3958 5004 2 chr2B.!!$R1 1046

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.033503 TGATCTCAGGGCGGTCAGTA 60.034 55.0 0.0 0.0 0.00 2.74 F
222 223 0.035056 CCTGGTTAGCTGGGGTCAAG 60.035 60.0 0.0 0.0 0.00 3.02 F
369 370 0.036388 CACCTCCTTAAAGGCTGCGA 60.036 55.0 0.0 0.0 40.34 5.10 F
1021 1035 0.036388 GGCCGAGGTTGTGATTCTCA 60.036 55.0 0.0 0.0 0.00 3.27 F
1603 2093 0.249868 TGAGTTGGAACGCTCTGTGG 60.250 55.0 0.0 0.0 34.81 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1021 1035 1.033746 CCGATCTTTGCCACTGCCAT 61.034 55.000 0.0 0.00 36.33 4.40 R
1603 2093 1.140852 TCCCATACCATGCAGCACTAC 59.859 52.381 0.0 0.00 0.00 2.73 R
2744 3417 4.262036 GCACCGACATATATCTGGACTTCA 60.262 45.833 0.0 0.00 0.00 3.02 R
3200 3877 1.653151 GTAGGAAAGGTGTCGCATCC 58.347 55.000 0.0 0.00 0.00 3.51 R
4035 5641 0.169009 CTCTGTCGCATCTGACACGA 59.831 55.000 0.0 0.24 43.62 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.267860 GGCGGCGCTTGATCTCAG 61.268 66.667 32.30 0.00 0.00 3.35
53 54 3.267860 GCGGCGCTTGATCTCAGG 61.268 66.667 26.86 0.00 0.00 3.86
54 55 2.587194 CGGCGCTTGATCTCAGGG 60.587 66.667 7.64 0.00 0.00 4.45
55 56 2.899339 GGCGCTTGATCTCAGGGC 60.899 66.667 19.77 19.77 40.16 5.19
56 57 3.267860 GCGCTTGATCTCAGGGCG 61.268 66.667 18.45 18.45 45.36 6.13
57 58 2.587194 CGCTTGATCTCAGGGCGG 60.587 66.667 16.36 4.42 41.98 6.13
58 59 2.586792 GCTTGATCTCAGGGCGGT 59.413 61.111 0.00 0.00 0.00 5.68
59 60 1.522580 GCTTGATCTCAGGGCGGTC 60.523 63.158 0.00 0.00 0.00 4.79
60 61 1.900351 CTTGATCTCAGGGCGGTCA 59.100 57.895 0.00 0.00 0.00 4.02
61 62 0.179089 CTTGATCTCAGGGCGGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
62 63 0.904865 TTGATCTCAGGGCGGTCAGT 60.905 55.000 0.00 0.00 0.00 3.41
63 64 0.033503 TGATCTCAGGGCGGTCAGTA 60.034 55.000 0.00 0.00 0.00 2.74
64 65 0.671251 GATCTCAGGGCGGTCAGTAG 59.329 60.000 0.00 0.00 0.00 2.57
65 66 1.395826 ATCTCAGGGCGGTCAGTAGC 61.396 60.000 0.00 0.00 0.00 3.58
72 73 4.814900 CGGTCAGTAGCGCTTGAT 57.185 55.556 18.68 0.00 40.09 2.57
73 74 2.582959 CGGTCAGTAGCGCTTGATC 58.417 57.895 18.68 14.32 40.09 2.92
74 75 0.101399 CGGTCAGTAGCGCTTGATCT 59.899 55.000 18.68 6.76 40.09 2.75
75 76 1.846541 GGTCAGTAGCGCTTGATCTC 58.153 55.000 18.68 2.19 0.00 2.75
76 77 1.135139 GGTCAGTAGCGCTTGATCTCA 59.865 52.381 18.68 0.00 0.00 3.27
77 78 2.458951 GTCAGTAGCGCTTGATCTCAG 58.541 52.381 18.68 0.00 0.00 3.35
78 79 1.406898 TCAGTAGCGCTTGATCTCAGG 59.593 52.381 18.68 0.00 0.00 3.86
79 80 0.749649 AGTAGCGCTTGATCTCAGGG 59.250 55.000 18.68 0.00 0.00 4.45
80 81 0.878086 GTAGCGCTTGATCTCAGGGC 60.878 60.000 18.68 20.13 41.01 5.19
81 82 2.355445 TAGCGCTTGATCTCAGGGCG 62.355 60.000 18.68 18.45 45.36 6.13
82 83 2.587194 CGCTTGATCTCAGGGCGG 60.587 66.667 16.36 4.42 41.98 6.13
83 84 2.899339 GCTTGATCTCAGGGCGGC 60.899 66.667 0.00 0.00 0.00 6.53
84 85 2.906458 CTTGATCTCAGGGCGGCT 59.094 61.111 9.56 0.00 0.00 5.52
85 86 1.523258 CTTGATCTCAGGGCGGCTG 60.523 63.158 9.56 5.48 0.00 4.85
86 87 2.937379 CTTGATCTCAGGGCGGCTGG 62.937 65.000 9.56 0.92 0.00 4.85
87 88 4.925861 GATCTCAGGGCGGCTGGC 62.926 72.222 11.40 11.40 42.51 4.85
99 100 4.120331 GCTGGCGGCGCTTGATTT 62.120 61.111 32.30 0.00 0.00 2.17
100 101 2.100991 CTGGCGGCGCTTGATTTC 59.899 61.111 32.30 13.58 0.00 2.17
101 102 3.723364 CTGGCGGCGCTTGATTTCG 62.723 63.158 32.30 0.56 0.00 3.46
107 108 2.020016 CGCTTGATTTCGCGGACG 59.980 61.111 6.13 0.00 45.17 4.79
108 109 2.399611 GCTTGATTTCGCGGACGG 59.600 61.111 6.13 0.00 40.63 4.79
109 110 2.399611 CTTGATTTCGCGGACGGC 59.600 61.111 6.13 0.00 40.63 5.68
110 111 3.095898 CTTGATTTCGCGGACGGCC 62.096 63.158 6.13 0.00 40.63 6.13
126 127 3.869272 CCGGCGCTGCACAAGATC 61.869 66.667 11.81 0.00 0.00 2.75
127 128 3.869272 CGGCGCTGCACAAGATCC 61.869 66.667 7.64 0.00 0.00 3.36
128 129 3.869272 GGCGCTGCACAAGATCCG 61.869 66.667 7.64 0.00 0.00 4.18
129 130 2.815211 GCGCTGCACAAGATCCGA 60.815 61.111 0.00 0.00 0.00 4.55
130 131 2.806856 GCGCTGCACAAGATCCGAG 61.807 63.158 0.00 0.00 0.00 4.63
131 132 2.806856 CGCTGCACAAGATCCGAGC 61.807 63.158 0.00 0.00 0.00 5.03
132 133 2.806856 GCTGCACAAGATCCGAGCG 61.807 63.158 0.00 0.00 0.00 5.03
133 134 2.125552 TGCACAAGATCCGAGCGG 60.126 61.111 1.74 1.74 0.00 5.52
134 135 2.125512 GCACAAGATCCGAGCGGT 60.126 61.111 8.96 0.00 36.47 5.68
135 136 2.167861 GCACAAGATCCGAGCGGTC 61.168 63.158 8.96 4.06 36.47 4.79
136 137 1.874019 CACAAGATCCGAGCGGTCG 60.874 63.158 28.88 28.88 46.39 4.79
151 152 4.873129 TCGGCGGCGCTTGATCTC 62.873 66.667 32.30 12.04 0.00 2.75
154 155 4.873129 GCGGCGCTTGATCTCGGA 62.873 66.667 26.86 0.00 0.00 4.55
155 156 2.656651 CGGCGCTTGATCTCGGAG 60.657 66.667 7.64 0.00 0.00 4.63
156 157 2.808315 GGCGCTTGATCTCGGAGA 59.192 61.111 10.62 10.62 0.00 3.71
157 158 1.590259 GGCGCTTGATCTCGGAGAC 60.590 63.158 10.41 5.35 0.00 3.36
158 159 1.139734 GCGCTTGATCTCGGAGACA 59.860 57.895 10.41 7.91 0.00 3.41
159 160 0.869454 GCGCTTGATCTCGGAGACAG 60.869 60.000 10.41 7.96 0.00 3.51
160 161 0.869454 CGCTTGATCTCGGAGACAGC 60.869 60.000 18.94 18.94 0.00 4.40
161 162 0.529555 GCTTGATCTCGGAGACAGCC 60.530 60.000 18.46 7.61 0.00 4.85
176 177 4.660938 GCCGGTGGCCCTTGACTT 62.661 66.667 1.90 0.00 44.06 3.01
177 178 2.359975 CCGGTGGCCCTTGACTTC 60.360 66.667 0.00 0.00 0.00 3.01
178 179 2.429930 CGGTGGCCCTTGACTTCA 59.570 61.111 0.00 0.00 0.00 3.02
179 180 1.672356 CGGTGGCCCTTGACTTCAG 60.672 63.158 0.00 0.00 0.00 3.02
180 181 1.303643 GGTGGCCCTTGACTTCAGG 60.304 63.158 0.00 0.00 0.00 3.86
181 182 1.303643 GTGGCCCTTGACTTCAGGG 60.304 63.158 0.00 0.08 45.43 4.45
182 183 1.463214 TGGCCCTTGACTTCAGGGA 60.463 57.895 9.33 0.00 45.01 4.20
183 184 0.846427 TGGCCCTTGACTTCAGGGAT 60.846 55.000 9.33 0.00 45.01 3.85
184 185 0.394899 GGCCCTTGACTTCAGGGATG 60.395 60.000 9.33 0.00 45.01 3.51
185 186 0.394899 GCCCTTGACTTCAGGGATGG 60.395 60.000 9.33 0.00 45.01 3.51
186 187 0.394899 CCCTTGACTTCAGGGATGGC 60.395 60.000 8.92 0.00 45.01 4.40
187 188 0.394899 CCTTGACTTCAGGGATGGCC 60.395 60.000 1.04 0.00 45.01 5.36
188 189 0.745845 CTTGACTTCAGGGATGGCCG 60.746 60.000 0.00 0.00 33.83 6.13
189 190 2.190578 GACTTCAGGGATGGCCGG 59.809 66.667 0.00 0.00 33.83 6.13
190 191 4.115199 ACTTCAGGGATGGCCGGC 62.115 66.667 21.18 21.18 33.83 6.13
203 204 3.564027 CCGGCGGCGTTTGAGATC 61.564 66.667 30.09 0.00 0.00 2.75
204 205 3.564027 CGGCGGCGTTTGAGATCC 61.564 66.667 24.74 0.00 0.00 3.36
205 206 2.125106 GGCGGCGTTTGAGATCCT 60.125 61.111 9.37 0.00 0.00 3.24
206 207 2.464459 GGCGGCGTTTGAGATCCTG 61.464 63.158 9.37 0.00 0.00 3.86
207 208 2.464459 GCGGCGTTTGAGATCCTGG 61.464 63.158 9.37 0.00 0.00 4.45
208 209 1.079127 CGGCGTTTGAGATCCTGGT 60.079 57.895 0.00 0.00 0.00 4.00
209 210 0.673644 CGGCGTTTGAGATCCTGGTT 60.674 55.000 0.00 0.00 0.00 3.67
210 211 1.404986 CGGCGTTTGAGATCCTGGTTA 60.405 52.381 0.00 0.00 0.00 2.85
211 212 2.280628 GGCGTTTGAGATCCTGGTTAG 58.719 52.381 0.00 0.00 0.00 2.34
212 213 1.666189 GCGTTTGAGATCCTGGTTAGC 59.334 52.381 0.00 0.00 0.00 3.09
213 214 2.678190 GCGTTTGAGATCCTGGTTAGCT 60.678 50.000 0.00 0.00 0.00 3.32
214 215 2.932614 CGTTTGAGATCCTGGTTAGCTG 59.067 50.000 0.00 0.00 0.00 4.24
215 216 3.274288 GTTTGAGATCCTGGTTAGCTGG 58.726 50.000 0.00 0.72 0.00 4.85
216 217 1.500474 TGAGATCCTGGTTAGCTGGG 58.500 55.000 7.46 0.00 0.00 4.45
217 218 0.761802 GAGATCCTGGTTAGCTGGGG 59.238 60.000 7.46 0.00 0.00 4.96
218 219 0.044855 AGATCCTGGTTAGCTGGGGT 59.955 55.000 7.46 0.00 0.00 4.95
219 220 0.470341 GATCCTGGTTAGCTGGGGTC 59.530 60.000 7.46 3.37 0.00 4.46
220 221 0.253160 ATCCTGGTTAGCTGGGGTCA 60.253 55.000 7.46 0.00 0.00 4.02
221 222 0.474854 TCCTGGTTAGCTGGGGTCAA 60.475 55.000 7.46 0.00 0.00 3.18
222 223 0.035056 CCTGGTTAGCTGGGGTCAAG 60.035 60.000 0.00 0.00 0.00 3.02
223 224 0.678048 CTGGTTAGCTGGGGTCAAGC 60.678 60.000 0.00 0.00 0.00 4.01
224 225 1.378762 GGTTAGCTGGGGTCAAGCA 59.621 57.895 0.00 0.00 0.00 3.91
225 226 0.251165 GGTTAGCTGGGGTCAAGCAA 60.251 55.000 0.00 0.00 0.00 3.91
226 227 1.168714 GTTAGCTGGGGTCAAGCAAG 58.831 55.000 0.00 0.00 0.00 4.01
227 228 1.064003 TTAGCTGGGGTCAAGCAAGA 58.936 50.000 0.00 0.00 0.00 3.02
228 229 0.615331 TAGCTGGGGTCAAGCAAGAG 59.385 55.000 0.00 0.00 0.00 2.85
229 230 1.073897 GCTGGGGTCAAGCAAGAGT 59.926 57.895 0.00 0.00 0.00 3.24
230 231 0.324943 GCTGGGGTCAAGCAAGAGTA 59.675 55.000 0.00 0.00 0.00 2.59
231 232 1.677217 GCTGGGGTCAAGCAAGAGTAG 60.677 57.143 0.00 0.00 0.00 2.57
232 233 0.984230 TGGGGTCAAGCAAGAGTAGG 59.016 55.000 0.00 0.00 0.00 3.18
233 234 0.393132 GGGGTCAAGCAAGAGTAGGC 60.393 60.000 0.00 0.00 0.00 3.93
234 235 0.393132 GGGTCAAGCAAGAGTAGGCC 60.393 60.000 0.00 0.00 0.00 5.19
235 236 0.324943 GGTCAAGCAAGAGTAGGCCA 59.675 55.000 5.01 0.00 0.00 5.36
236 237 1.065126 GGTCAAGCAAGAGTAGGCCAT 60.065 52.381 5.01 0.00 0.00 4.40
237 238 2.284190 GTCAAGCAAGAGTAGGCCATC 58.716 52.381 5.01 0.00 0.00 3.51
238 239 2.093235 GTCAAGCAAGAGTAGGCCATCT 60.093 50.000 5.01 1.59 0.00 2.90
239 240 3.133003 GTCAAGCAAGAGTAGGCCATCTA 59.867 47.826 5.01 0.00 0.00 1.98
240 241 3.133003 TCAAGCAAGAGTAGGCCATCTAC 59.867 47.826 5.01 0.00 46.63 2.59
249 250 3.052081 GCCATCTACGGCGAGGAT 58.948 61.111 16.62 13.56 43.52 3.24
250 251 1.373497 GCCATCTACGGCGAGGATG 60.373 63.158 26.41 26.41 43.52 3.51
251 252 1.290324 CCATCTACGGCGAGGATGG 59.710 63.158 32.29 32.29 46.63 3.51
252 253 1.373497 CATCTACGGCGAGGATGGC 60.373 63.158 26.00 0.00 40.04 4.40
278 279 4.608774 AGCAGCAGGGCCAAGCAA 62.609 61.111 20.81 0.00 0.00 3.91
279 280 4.065281 GCAGCAGGGCCAAGCAAG 62.065 66.667 20.81 14.18 0.00 4.01
280 281 2.282674 CAGCAGGGCCAAGCAAGA 60.283 61.111 20.81 0.00 0.00 3.02
281 282 1.904865 CAGCAGGGCCAAGCAAGAA 60.905 57.895 20.81 0.00 0.00 2.52
282 283 1.605738 AGCAGGGCCAAGCAAGAAG 60.606 57.895 20.81 0.00 0.00 2.85
283 284 1.604593 GCAGGGCCAAGCAAGAAGA 60.605 57.895 15.07 0.00 0.00 2.87
284 285 1.593296 GCAGGGCCAAGCAAGAAGAG 61.593 60.000 15.07 0.00 0.00 2.85
285 286 1.303970 AGGGCCAAGCAAGAAGAGC 60.304 57.895 6.18 0.00 0.00 4.09
286 287 1.303970 GGGCCAAGCAAGAAGAGCT 60.304 57.895 4.39 0.00 45.97 4.09
287 288 1.593296 GGGCCAAGCAAGAAGAGCTG 61.593 60.000 4.39 0.00 42.53 4.24
288 289 1.593296 GGCCAAGCAAGAAGAGCTGG 61.593 60.000 0.00 0.00 42.53 4.85
289 290 2.564471 CCAAGCAAGAAGAGCTGGG 58.436 57.895 0.00 0.00 46.16 4.45
290 291 0.251077 CCAAGCAAGAAGAGCTGGGT 60.251 55.000 0.00 0.00 46.20 4.51
291 292 0.879765 CAAGCAAGAAGAGCTGGGTG 59.120 55.000 0.00 0.00 42.53 4.61
292 293 0.767375 AAGCAAGAAGAGCTGGGTGA 59.233 50.000 0.00 0.00 42.53 4.02
293 294 0.990374 AGCAAGAAGAGCTGGGTGAT 59.010 50.000 0.00 0.00 41.61 3.06
294 295 1.093159 GCAAGAAGAGCTGGGTGATG 58.907 55.000 0.00 0.00 0.00 3.07
295 296 1.747709 CAAGAAGAGCTGGGTGATGG 58.252 55.000 0.00 0.00 0.00 3.51
296 297 1.004044 CAAGAAGAGCTGGGTGATGGT 59.996 52.381 0.00 0.00 0.00 3.55
297 298 2.237143 CAAGAAGAGCTGGGTGATGGTA 59.763 50.000 0.00 0.00 0.00 3.25
298 299 2.551270 AGAAGAGCTGGGTGATGGTAA 58.449 47.619 0.00 0.00 0.00 2.85
299 300 3.118531 AGAAGAGCTGGGTGATGGTAAT 58.881 45.455 0.00 0.00 0.00 1.89
300 301 3.135530 AGAAGAGCTGGGTGATGGTAATC 59.864 47.826 0.00 0.00 0.00 1.75
301 302 1.414181 AGAGCTGGGTGATGGTAATCG 59.586 52.381 0.00 0.00 35.37 3.34
302 303 1.412710 GAGCTGGGTGATGGTAATCGA 59.587 52.381 0.00 0.00 35.37 3.59
303 304 2.037772 GAGCTGGGTGATGGTAATCGAT 59.962 50.000 0.00 0.00 35.37 3.59
304 305 2.439507 AGCTGGGTGATGGTAATCGATT 59.560 45.455 16.15 16.15 35.37 3.34
305 306 2.808543 GCTGGGTGATGGTAATCGATTC 59.191 50.000 15.25 6.49 35.37 2.52
306 307 3.403038 CTGGGTGATGGTAATCGATTCC 58.597 50.000 15.25 15.46 35.37 3.01
307 308 3.045634 TGGGTGATGGTAATCGATTCCT 58.954 45.455 15.25 6.20 35.37 3.36
308 309 3.458118 TGGGTGATGGTAATCGATTCCTT 59.542 43.478 15.25 13.12 35.37 3.36
309 310 4.080015 TGGGTGATGGTAATCGATTCCTTT 60.080 41.667 15.25 7.86 35.37 3.11
310 311 5.131308 TGGGTGATGGTAATCGATTCCTTTA 59.869 40.000 15.25 8.09 35.37 1.85
311 312 5.469084 GGGTGATGGTAATCGATTCCTTTAC 59.531 44.000 15.25 17.29 35.37 2.01
312 313 5.469084 GGTGATGGTAATCGATTCCTTTACC 59.531 44.000 23.62 23.62 43.33 2.85
313 314 6.289064 GTGATGGTAATCGATTCCTTTACCT 58.711 40.000 21.73 11.44 43.40 3.08
314 315 6.202954 GTGATGGTAATCGATTCCTTTACCTG 59.797 42.308 21.73 0.00 43.40 4.00
315 316 5.943349 TGGTAATCGATTCCTTTACCTGA 57.057 39.130 21.73 5.98 43.40 3.86
316 317 6.302535 TGGTAATCGATTCCTTTACCTGAA 57.697 37.500 21.73 5.40 43.40 3.02
317 318 6.110707 TGGTAATCGATTCCTTTACCTGAAC 58.889 40.000 21.73 8.94 43.40 3.18
318 319 6.110707 GGTAATCGATTCCTTTACCTGAACA 58.889 40.000 15.25 0.00 41.00 3.18
319 320 6.766467 GGTAATCGATTCCTTTACCTGAACAT 59.234 38.462 15.25 0.00 41.00 2.71
320 321 6.683974 AATCGATTCCTTTACCTGAACATG 57.316 37.500 4.39 0.00 0.00 3.21
321 322 5.414789 TCGATTCCTTTACCTGAACATGA 57.585 39.130 0.00 0.00 0.00 3.07
322 323 5.800296 TCGATTCCTTTACCTGAACATGAA 58.200 37.500 0.00 0.00 0.00 2.57
323 324 5.642063 TCGATTCCTTTACCTGAACATGAAC 59.358 40.000 0.00 0.00 0.00 3.18
324 325 5.163754 CGATTCCTTTACCTGAACATGAACC 60.164 44.000 0.00 0.00 0.00 3.62
325 326 4.715534 TCCTTTACCTGAACATGAACCA 57.284 40.909 0.00 0.00 0.00 3.67
326 327 5.055265 TCCTTTACCTGAACATGAACCAA 57.945 39.130 0.00 0.00 0.00 3.67
327 328 5.450453 TCCTTTACCTGAACATGAACCAAA 58.550 37.500 0.00 0.00 0.00 3.28
328 329 5.300792 TCCTTTACCTGAACATGAACCAAAC 59.699 40.000 0.00 0.00 0.00 2.93
329 330 5.068460 CCTTTACCTGAACATGAACCAAACA 59.932 40.000 0.00 0.00 0.00 2.83
330 331 6.406400 CCTTTACCTGAACATGAACCAAACAA 60.406 38.462 0.00 0.00 0.00 2.83
331 332 6.531503 TTACCTGAACATGAACCAAACAAA 57.468 33.333 0.00 0.00 0.00 2.83
332 333 4.754322 ACCTGAACATGAACCAAACAAAC 58.246 39.130 0.00 0.00 0.00 2.93
333 334 4.466015 ACCTGAACATGAACCAAACAAACT 59.534 37.500 0.00 0.00 0.00 2.66
334 335 5.046663 ACCTGAACATGAACCAAACAAACTT 60.047 36.000 0.00 0.00 0.00 2.66
335 336 5.291614 CCTGAACATGAACCAAACAAACTTG 59.708 40.000 0.00 0.00 0.00 3.16
336 337 4.629200 TGAACATGAACCAAACAAACTTGC 59.371 37.500 0.00 0.00 0.00 4.01
337 338 4.199432 ACATGAACCAAACAAACTTGCA 57.801 36.364 0.00 0.00 0.00 4.08
338 339 4.573900 ACATGAACCAAACAAACTTGCAA 58.426 34.783 0.00 0.00 0.00 4.08
339 340 4.999950 ACATGAACCAAACAAACTTGCAAA 59.000 33.333 0.00 0.00 0.00 3.68
340 341 5.471456 ACATGAACCAAACAAACTTGCAAAA 59.529 32.000 0.00 0.00 0.00 2.44
341 342 6.016777 ACATGAACCAAACAAACTTGCAAAAA 60.017 30.769 0.00 0.00 0.00 1.94
363 364 7.761038 AAAACTGATTACACCTCCTTAAAGG 57.239 36.000 0.00 0.00 42.55 3.11
364 365 4.844884 ACTGATTACACCTCCTTAAAGGC 58.155 43.478 0.00 0.00 40.34 4.35
365 366 4.536489 ACTGATTACACCTCCTTAAAGGCT 59.464 41.667 0.00 0.00 40.34 4.58
366 367 4.843728 TGATTACACCTCCTTAAAGGCTG 58.156 43.478 0.00 0.00 40.34 4.85
367 368 2.781681 TACACCTCCTTAAAGGCTGC 57.218 50.000 0.00 0.00 40.34 5.25
368 369 0.321653 ACACCTCCTTAAAGGCTGCG 60.322 55.000 0.00 0.00 40.34 5.18
369 370 0.036388 CACCTCCTTAAAGGCTGCGA 60.036 55.000 0.00 0.00 40.34 5.10
370 371 0.912486 ACCTCCTTAAAGGCTGCGAT 59.088 50.000 0.00 0.00 40.34 4.58
371 372 1.134371 ACCTCCTTAAAGGCTGCGATC 60.134 52.381 0.00 0.00 40.34 3.69
372 373 1.139853 CCTCCTTAAAGGCTGCGATCT 59.860 52.381 0.00 0.00 34.61 2.75
373 374 2.208431 CTCCTTAAAGGCTGCGATCTG 58.792 52.381 0.00 0.00 34.61 2.90
374 375 1.831106 TCCTTAAAGGCTGCGATCTGA 59.169 47.619 0.00 0.00 34.61 3.27
375 376 2.435805 TCCTTAAAGGCTGCGATCTGAT 59.564 45.455 0.00 0.00 34.61 2.90
376 377 3.118261 TCCTTAAAGGCTGCGATCTGATT 60.118 43.478 0.00 0.00 34.61 2.57
377 378 4.100963 TCCTTAAAGGCTGCGATCTGATTA 59.899 41.667 0.00 0.00 34.61 1.75
378 379 4.212214 CCTTAAAGGCTGCGATCTGATTAC 59.788 45.833 0.00 0.00 0.00 1.89
379 380 1.858091 AAGGCTGCGATCTGATTACG 58.142 50.000 0.00 0.00 0.00 3.18
380 381 0.747255 AGGCTGCGATCTGATTACGT 59.253 50.000 0.00 0.00 0.00 3.57
381 382 1.137086 AGGCTGCGATCTGATTACGTT 59.863 47.619 0.00 0.00 0.00 3.99
382 383 1.258982 GGCTGCGATCTGATTACGTTG 59.741 52.381 0.00 0.00 0.00 4.10
383 384 2.193447 GCTGCGATCTGATTACGTTGA 58.807 47.619 0.00 0.00 0.00 3.18
384 385 2.034507 GCTGCGATCTGATTACGTTGAC 60.035 50.000 0.00 0.00 0.00 3.18
385 386 2.182014 TGCGATCTGATTACGTTGACG 58.818 47.619 0.00 1.41 46.33 4.35
386 387 1.072089 GCGATCTGATTACGTTGACGC 60.072 52.381 3.05 0.00 44.43 5.19
387 388 2.451132 CGATCTGATTACGTTGACGCT 58.549 47.619 3.05 0.00 44.43 5.07
388 389 2.214244 CGATCTGATTACGTTGACGCTG 59.786 50.000 3.05 0.00 44.43 5.18
389 390 1.346365 TCTGATTACGTTGACGCTGC 58.654 50.000 3.05 0.00 44.43 5.25
390 391 0.370273 CTGATTACGTTGACGCTGCC 59.630 55.000 3.05 0.00 44.43 4.85
391 392 0.037697 TGATTACGTTGACGCTGCCT 60.038 50.000 3.05 0.00 44.43 4.75
392 393 1.076332 GATTACGTTGACGCTGCCTT 58.924 50.000 3.05 0.00 44.43 4.35
393 394 2.264813 GATTACGTTGACGCTGCCTTA 58.735 47.619 3.05 0.00 44.43 2.69
394 395 2.151881 TTACGTTGACGCTGCCTTAA 57.848 45.000 3.05 0.00 44.43 1.85
395 396 1.421382 TACGTTGACGCTGCCTTAAC 58.579 50.000 3.05 0.00 44.43 2.01
396 397 1.226030 ACGTTGACGCTGCCTTAACC 61.226 55.000 3.05 0.00 44.43 2.85
397 398 1.225376 CGTTGACGCTGCCTTAACCA 61.225 55.000 0.00 0.00 0.00 3.67
398 399 1.165270 GTTGACGCTGCCTTAACCAT 58.835 50.000 0.00 0.00 0.00 3.55
399 400 1.539827 GTTGACGCTGCCTTAACCATT 59.460 47.619 0.00 0.00 0.00 3.16
400 401 1.904287 TGACGCTGCCTTAACCATTT 58.096 45.000 0.00 0.00 0.00 2.32
401 402 1.810151 TGACGCTGCCTTAACCATTTC 59.190 47.619 0.00 0.00 0.00 2.17
402 403 2.084546 GACGCTGCCTTAACCATTTCT 58.915 47.619 0.00 0.00 0.00 2.52
403 404 1.812571 ACGCTGCCTTAACCATTTCTG 59.187 47.619 0.00 0.00 0.00 3.02
404 405 1.812571 CGCTGCCTTAACCATTTCTGT 59.187 47.619 0.00 0.00 0.00 3.41
405 406 3.006940 CGCTGCCTTAACCATTTCTGTA 58.993 45.455 0.00 0.00 0.00 2.74
406 407 3.063997 CGCTGCCTTAACCATTTCTGTAG 59.936 47.826 0.00 0.00 0.00 2.74
407 408 3.181496 GCTGCCTTAACCATTTCTGTAGC 60.181 47.826 0.00 0.00 0.00 3.58
408 409 3.352648 TGCCTTAACCATTTCTGTAGCC 58.647 45.455 0.00 0.00 0.00 3.93
409 410 3.245087 TGCCTTAACCATTTCTGTAGCCA 60.245 43.478 0.00 0.00 0.00 4.75
410 411 3.761752 GCCTTAACCATTTCTGTAGCCAA 59.238 43.478 0.00 0.00 0.00 4.52
411 412 4.219725 GCCTTAACCATTTCTGTAGCCAAA 59.780 41.667 0.00 0.00 0.00 3.28
412 413 5.709966 CCTTAACCATTTCTGTAGCCAAAC 58.290 41.667 0.00 0.00 0.00 2.93
413 414 5.242838 CCTTAACCATTTCTGTAGCCAAACA 59.757 40.000 0.00 0.00 0.00 2.83
414 415 4.584327 AACCATTTCTGTAGCCAAACAC 57.416 40.909 0.00 0.00 0.00 3.32
415 416 2.890945 ACCATTTCTGTAGCCAAACACC 59.109 45.455 0.00 0.00 0.00 4.16
416 417 3.157087 CCATTTCTGTAGCCAAACACCT 58.843 45.455 0.00 0.00 0.00 4.00
417 418 3.191371 CCATTTCTGTAGCCAAACACCTC 59.809 47.826 0.00 0.00 0.00 3.85
418 419 2.561478 TTCTGTAGCCAAACACCTCC 57.439 50.000 0.00 0.00 0.00 4.30
419 420 1.729586 TCTGTAGCCAAACACCTCCT 58.270 50.000 0.00 0.00 0.00 3.69
471 477 0.949397 TCTATGGGATCGACGAACGG 59.051 55.000 0.00 0.00 42.82 4.44
472 478 0.666913 CTATGGGATCGACGAACGGT 59.333 55.000 0.00 0.00 42.82 4.83
473 479 1.875514 CTATGGGATCGACGAACGGTA 59.124 52.381 0.00 0.00 42.82 4.02
612 619 3.118592 TCCCAACCACCAATCAAAACAAC 60.119 43.478 0.00 0.00 0.00 3.32
632 639 2.895404 ACATCTGGCTCAAAACTGCAAT 59.105 40.909 0.00 0.00 0.00 3.56
748 757 5.920273 GGTATTATGCATCCATTGTTTTCCG 59.080 40.000 0.19 0.00 32.85 4.30
765 774 2.756829 TCCGTCTAGACTAGATCTGCG 58.243 52.381 20.34 13.02 38.49 5.18
784 793 5.652014 TCTGCGAAATGTTTGGAGGAAATAT 59.348 36.000 0.00 0.00 0.00 1.28
996 1010 0.894141 TCTCAGCTCTGACTTGAGGC 59.106 55.000 11.58 0.00 39.01 4.70
1021 1035 0.036388 GGCCGAGGTTGTGATTCTCA 60.036 55.000 0.00 0.00 0.00 3.27
1087 1103 4.347000 TGAACCAGGCTACTTTACAGTTCT 59.653 41.667 0.00 0.00 34.79 3.01
1603 2093 0.249868 TGAGTTGGAACGCTCTGTGG 60.250 55.000 0.00 0.00 34.81 4.17
1764 2254 9.481340 AAATTAATCAAGGAGCTTTTCAAAGAC 57.519 29.630 3.35 0.00 38.28 3.01
2029 2520 4.914983 TCTATCAAAGGATGGATCATGGC 58.085 43.478 0.00 0.00 36.26 4.40
2744 3417 6.058183 CCACTTTACTGCCTCTAATAGCAAT 58.942 40.000 0.00 0.00 38.82 3.56
3825 5429 3.458487 ACTGTTCCACTACCAGTTTCCTT 59.542 43.478 0.00 0.00 36.03 3.36
4035 5641 6.223120 GTTGTTGCCTTGAGATGGTAAAAAT 58.777 36.000 0.00 0.00 31.05 1.82
4036 5642 6.024552 TGTTGCCTTGAGATGGTAAAAATC 57.975 37.500 0.00 0.00 31.37 2.17
4064 5670 2.651361 CGACAGAGCTGGACCGTT 59.349 61.111 0.00 0.00 34.19 4.44
4182 5789 1.569479 GCCGTGGCTCAGAACTTGTC 61.569 60.000 2.98 0.00 38.26 3.18
4188 5795 0.723981 GCTCAGAACTTGTCCGATGC 59.276 55.000 0.00 0.00 0.00 3.91
4192 5821 2.166459 TCAGAACTTGTCCGATGCTAGG 59.834 50.000 0.00 0.00 0.00 3.02
4206 5839 1.682684 CTAGGCCAGGTCGTGAGGT 60.683 63.158 5.01 0.00 0.00 3.85
4340 7517 1.598130 GCTTCGATGGATTCCCCGG 60.598 63.158 12.65 0.00 37.93 5.73
4367 7544 2.434884 GCCGCTGCTTACTCTGCA 60.435 61.111 0.00 0.00 38.81 4.41
4379 7556 4.380531 CTTACTCTGCAGTGGTTTTCAGA 58.619 43.478 19.27 0.00 33.62 3.27
4380 7557 3.498774 ACTCTGCAGTGGTTTTCAGAT 57.501 42.857 19.27 0.00 35.34 2.90
4382 7559 3.817647 ACTCTGCAGTGGTTTTCAGATTC 59.182 43.478 19.27 0.00 35.34 2.52
4388 7565 1.893137 GTGGTTTTCAGATTCCCCACC 59.107 52.381 0.00 0.00 37.07 4.61
4451 7635 1.001282 ACTCTAGGGTTCCTCCGTCT 58.999 55.000 0.00 0.00 34.61 4.18
4627 7867 2.282674 TCCTGTACTGGTCGGCGT 60.283 61.111 17.42 0.00 0.00 5.68
4664 7904 1.633945 ACTAACAAGTCCATGTCCCCC 59.366 52.381 0.00 0.00 31.81 5.40
4678 7918 2.358737 CCCCTGGTTCTGCACGAC 60.359 66.667 0.00 0.00 0.00 4.34
4731 7975 3.197116 CACGGGTAACTAATCCAGTTCCT 59.803 47.826 0.00 0.00 44.48 3.36
4897 8155 8.328758 ACTCCAAAATCATACAGGTAGATTTGA 58.671 33.333 12.96 2.09 40.11 2.69
4988 8251 4.682860 CAGCACAAGTTTCTTAATTGCCAG 59.317 41.667 0.00 0.00 0.00 4.85
4993 8256 6.756074 CACAAGTTTCTTAATTGCCAGACAAA 59.244 34.615 0.00 0.00 42.86 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.796231 CCGGACGCTCGGGTCTTG 62.796 72.222 12.85 6.91 45.78 3.02
35 36 3.267860 CTGAGATCAAGCGCCGCC 61.268 66.667 4.98 0.00 0.00 6.13
36 37 3.267860 CCTGAGATCAAGCGCCGC 61.268 66.667 2.29 0.00 0.00 6.53
37 38 2.587194 CCCTGAGATCAAGCGCCG 60.587 66.667 2.29 0.00 0.00 6.46
38 39 2.899339 GCCCTGAGATCAAGCGCC 60.899 66.667 2.29 0.00 0.00 6.53
39 40 3.267860 CGCCCTGAGATCAAGCGC 61.268 66.667 0.00 0.00 40.25 5.92
40 41 2.587194 CCGCCCTGAGATCAAGCG 60.587 66.667 16.05 16.05 43.82 4.68
41 42 1.522580 GACCGCCCTGAGATCAAGC 60.523 63.158 0.00 0.00 0.00 4.01
42 43 0.179089 CTGACCGCCCTGAGATCAAG 60.179 60.000 0.00 0.00 0.00 3.02
43 44 0.904865 ACTGACCGCCCTGAGATCAA 60.905 55.000 0.00 0.00 0.00 2.57
44 45 0.033503 TACTGACCGCCCTGAGATCA 60.034 55.000 0.00 0.00 0.00 2.92
45 46 0.671251 CTACTGACCGCCCTGAGATC 59.329 60.000 0.00 0.00 0.00 2.75
46 47 1.395826 GCTACTGACCGCCCTGAGAT 61.396 60.000 0.00 0.00 0.00 2.75
47 48 2.052690 GCTACTGACCGCCCTGAGA 61.053 63.158 0.00 0.00 0.00 3.27
48 49 2.496817 GCTACTGACCGCCCTGAG 59.503 66.667 0.00 0.00 0.00 3.35
49 50 3.449227 CGCTACTGACCGCCCTGA 61.449 66.667 0.00 0.00 0.00 3.86
55 56 0.101399 AGATCAAGCGCTACTGACCG 59.899 55.000 12.05 0.00 0.00 4.79
56 57 1.135139 TGAGATCAAGCGCTACTGACC 59.865 52.381 12.05 1.86 0.00 4.02
57 58 2.458951 CTGAGATCAAGCGCTACTGAC 58.541 52.381 12.05 6.94 0.00 3.51
58 59 1.406898 CCTGAGATCAAGCGCTACTGA 59.593 52.381 12.05 13.14 0.00 3.41
59 60 1.537776 CCCTGAGATCAAGCGCTACTG 60.538 57.143 12.05 6.54 0.00 2.74
60 61 0.749649 CCCTGAGATCAAGCGCTACT 59.250 55.000 12.05 8.28 0.00 2.57
61 62 0.878086 GCCCTGAGATCAAGCGCTAC 60.878 60.000 12.05 2.73 0.00 3.58
62 63 1.443407 GCCCTGAGATCAAGCGCTA 59.557 57.895 12.05 0.00 0.00 4.26
63 64 2.188994 GCCCTGAGATCAAGCGCT 59.811 61.111 2.64 2.64 0.00 5.92
64 65 3.267860 CGCCCTGAGATCAAGCGC 61.268 66.667 0.00 0.00 40.25 5.92
65 66 2.587194 CCGCCCTGAGATCAAGCG 60.587 66.667 16.05 16.05 43.82 4.68
66 67 2.899339 GCCGCCCTGAGATCAAGC 60.899 66.667 0.00 0.00 0.00 4.01
67 68 1.523258 CAGCCGCCCTGAGATCAAG 60.523 63.158 0.00 0.00 44.64 3.02
68 69 2.586245 CAGCCGCCCTGAGATCAA 59.414 61.111 0.00 0.00 44.64 2.57
69 70 3.473647 CCAGCCGCCCTGAGATCA 61.474 66.667 0.00 0.00 44.64 2.92
70 71 4.925861 GCCAGCCGCCCTGAGATC 62.926 72.222 3.22 0.00 44.64 2.75
82 83 4.120331 AAATCAAGCGCCGCCAGC 62.120 61.111 4.98 0.00 38.52 4.85
83 84 2.100991 GAAATCAAGCGCCGCCAG 59.899 61.111 4.98 0.00 0.00 4.85
84 85 3.798650 CGAAATCAAGCGCCGCCA 61.799 61.111 4.98 0.00 0.00 5.69
91 92 2.399611 CCGTCCGCGAAATCAAGC 59.600 61.111 8.23 0.00 41.33 4.01
92 93 2.399611 GCCGTCCGCGAAATCAAG 59.600 61.111 8.23 0.00 41.33 3.02
93 94 3.122323 GGCCGTCCGCGAAATCAA 61.122 61.111 8.23 0.00 41.33 2.57
109 110 3.869272 GATCTTGTGCAGCGCCGG 61.869 66.667 2.29 0.00 0.00 6.13
110 111 3.869272 GGATCTTGTGCAGCGCCG 61.869 66.667 2.29 0.00 0.00 6.46
111 112 3.869272 CGGATCTTGTGCAGCGCC 61.869 66.667 2.29 0.00 0.00 6.53
112 113 2.806856 CTCGGATCTTGTGCAGCGC 61.807 63.158 0.00 0.00 0.00 5.92
113 114 2.806856 GCTCGGATCTTGTGCAGCG 61.807 63.158 0.00 0.00 0.00 5.18
114 115 2.806856 CGCTCGGATCTTGTGCAGC 61.807 63.158 11.23 0.00 0.00 5.25
115 116 2.169789 CCGCTCGGATCTTGTGCAG 61.170 63.158 1.35 5.83 37.50 4.41
116 117 2.125552 CCGCTCGGATCTTGTGCA 60.126 61.111 1.35 0.00 37.50 4.57
117 118 2.125512 ACCGCTCGGATCTTGTGC 60.126 61.111 15.95 0.00 38.96 4.57
118 119 1.874019 CGACCGCTCGGATCTTGTG 60.874 63.158 15.95 0.00 38.96 3.33
119 120 2.490217 CGACCGCTCGGATCTTGT 59.510 61.111 15.95 0.00 38.96 3.16
134 135 4.873129 GAGATCAAGCGCCGCCGA 62.873 66.667 4.98 2.70 36.29 5.54
137 138 4.873129 TCCGAGATCAAGCGCCGC 62.873 66.667 2.29 0.00 0.00 6.53
138 139 2.656651 CTCCGAGATCAAGCGCCG 60.657 66.667 2.29 0.00 0.00 6.46
139 140 1.590259 GTCTCCGAGATCAAGCGCC 60.590 63.158 2.29 0.00 0.00 6.53
140 141 0.869454 CTGTCTCCGAGATCAAGCGC 60.869 60.000 0.00 0.00 0.00 5.92
141 142 0.869454 GCTGTCTCCGAGATCAAGCG 60.869 60.000 0.33 0.00 0.00 4.68
142 143 0.529555 GGCTGTCTCCGAGATCAAGC 60.530 60.000 16.64 16.64 0.00 4.01
143 144 3.657956 GGCTGTCTCCGAGATCAAG 57.342 57.895 0.33 1.83 0.00 3.02
160 161 2.359975 GAAGTCAAGGGCCACCGG 60.360 66.667 6.18 0.00 43.47 5.28
161 162 1.672356 CTGAAGTCAAGGGCCACCG 60.672 63.158 6.18 0.00 43.47 4.94
162 163 1.303643 CCTGAAGTCAAGGGCCACC 60.304 63.158 6.18 0.00 0.00 4.61
163 164 1.303643 CCCTGAAGTCAAGGGCCAC 60.304 63.158 6.18 0.00 35.91 5.01
164 165 0.846427 ATCCCTGAAGTCAAGGGCCA 60.846 55.000 6.18 0.00 42.46 5.36
165 166 0.394899 CATCCCTGAAGTCAAGGGCC 60.395 60.000 3.47 0.00 42.46 5.80
166 167 0.394899 CCATCCCTGAAGTCAAGGGC 60.395 60.000 3.47 0.00 42.46 5.19
167 168 0.394899 GCCATCCCTGAAGTCAAGGG 60.395 60.000 1.82 1.82 44.06 3.95
168 169 0.394899 GGCCATCCCTGAAGTCAAGG 60.395 60.000 0.00 0.00 0.00 3.61
169 170 0.745845 CGGCCATCCCTGAAGTCAAG 60.746 60.000 2.24 0.00 0.00 3.02
170 171 1.299648 CGGCCATCCCTGAAGTCAA 59.700 57.895 2.24 0.00 0.00 3.18
171 172 2.669133 CCGGCCATCCCTGAAGTCA 61.669 63.158 2.24 0.00 0.00 3.41
172 173 2.190578 CCGGCCATCCCTGAAGTC 59.809 66.667 2.24 0.00 0.00 3.01
173 174 4.115199 GCCGGCCATCCCTGAAGT 62.115 66.667 18.11 0.00 0.00 3.01
186 187 3.564027 GATCTCAAACGCCGCCGG 61.564 66.667 0.00 0.00 39.22 6.13
187 188 3.564027 GGATCTCAAACGCCGCCG 61.564 66.667 0.00 0.00 41.14 6.46
188 189 2.125106 AGGATCTCAAACGCCGCC 60.125 61.111 0.00 0.00 0.00 6.13
189 190 2.464459 CCAGGATCTCAAACGCCGC 61.464 63.158 0.00 0.00 0.00 6.53
190 191 0.673644 AACCAGGATCTCAAACGCCG 60.674 55.000 0.00 0.00 0.00 6.46
191 192 2.280628 CTAACCAGGATCTCAAACGCC 58.719 52.381 0.00 0.00 0.00 5.68
192 193 1.666189 GCTAACCAGGATCTCAAACGC 59.334 52.381 0.00 0.00 0.00 4.84
193 194 2.932614 CAGCTAACCAGGATCTCAAACG 59.067 50.000 0.00 0.00 0.00 3.60
194 195 3.274288 CCAGCTAACCAGGATCTCAAAC 58.726 50.000 0.00 0.00 0.00 2.93
195 196 2.239654 CCCAGCTAACCAGGATCTCAAA 59.760 50.000 0.00 0.00 0.00 2.69
196 197 1.839994 CCCAGCTAACCAGGATCTCAA 59.160 52.381 0.00 0.00 0.00 3.02
197 198 1.500474 CCCAGCTAACCAGGATCTCA 58.500 55.000 0.00 0.00 0.00 3.27
198 199 0.761802 CCCCAGCTAACCAGGATCTC 59.238 60.000 0.00 0.00 0.00 2.75
199 200 0.044855 ACCCCAGCTAACCAGGATCT 59.955 55.000 0.00 0.00 0.00 2.75
200 201 0.470341 GACCCCAGCTAACCAGGATC 59.530 60.000 0.00 0.00 0.00 3.36
201 202 0.253160 TGACCCCAGCTAACCAGGAT 60.253 55.000 0.00 0.00 0.00 3.24
202 203 0.474854 TTGACCCCAGCTAACCAGGA 60.475 55.000 0.00 0.00 0.00 3.86
203 204 0.035056 CTTGACCCCAGCTAACCAGG 60.035 60.000 0.00 0.00 0.00 4.45
204 205 0.678048 GCTTGACCCCAGCTAACCAG 60.678 60.000 0.00 0.00 0.00 4.00
205 206 1.378762 GCTTGACCCCAGCTAACCA 59.621 57.895 0.00 0.00 0.00 3.67
206 207 0.251165 TTGCTTGACCCCAGCTAACC 60.251 55.000 0.00 0.00 0.00 2.85
207 208 1.168714 CTTGCTTGACCCCAGCTAAC 58.831 55.000 0.00 0.00 0.00 2.34
208 209 1.003580 CTCTTGCTTGACCCCAGCTAA 59.996 52.381 0.00 0.00 0.00 3.09
209 210 0.615331 CTCTTGCTTGACCCCAGCTA 59.385 55.000 0.00 0.00 0.00 3.32
210 211 1.377994 CTCTTGCTTGACCCCAGCT 59.622 57.895 0.00 0.00 0.00 4.24
211 212 0.324943 TACTCTTGCTTGACCCCAGC 59.675 55.000 0.00 0.00 0.00 4.85
212 213 1.065854 CCTACTCTTGCTTGACCCCAG 60.066 57.143 0.00 0.00 0.00 4.45
213 214 0.984230 CCTACTCTTGCTTGACCCCA 59.016 55.000 0.00 0.00 0.00 4.96
214 215 0.393132 GCCTACTCTTGCTTGACCCC 60.393 60.000 0.00 0.00 0.00 4.95
215 216 0.393132 GGCCTACTCTTGCTTGACCC 60.393 60.000 0.00 0.00 0.00 4.46
216 217 0.324943 TGGCCTACTCTTGCTTGACC 59.675 55.000 3.32 0.00 0.00 4.02
217 218 2.093235 AGATGGCCTACTCTTGCTTGAC 60.093 50.000 3.32 0.00 0.00 3.18
218 219 2.191400 AGATGGCCTACTCTTGCTTGA 58.809 47.619 3.32 0.00 0.00 3.02
219 220 2.706339 AGATGGCCTACTCTTGCTTG 57.294 50.000 3.32 0.00 0.00 4.01
220 221 2.101582 CGTAGATGGCCTACTCTTGCTT 59.898 50.000 3.32 0.00 44.34 3.91
221 222 1.683917 CGTAGATGGCCTACTCTTGCT 59.316 52.381 3.32 0.00 44.34 3.91
222 223 1.269831 CCGTAGATGGCCTACTCTTGC 60.270 57.143 3.32 0.36 44.34 4.01
223 224 2.802787 CCGTAGATGGCCTACTCTTG 57.197 55.000 3.32 0.55 44.34 3.02
233 234 4.974792 CATCCTCGCCGTAGATGG 57.025 61.111 10.05 0.00 34.94 3.51
234 235 1.373497 GCCATCCTCGCCGTAGATG 60.373 63.158 10.70 10.70 37.69 2.90
235 236 2.920645 CGCCATCCTCGCCGTAGAT 61.921 63.158 0.00 0.00 0.00 1.98
236 237 3.592814 CGCCATCCTCGCCGTAGA 61.593 66.667 0.00 0.00 0.00 2.59
237 238 4.647615 CCGCCATCCTCGCCGTAG 62.648 72.222 0.00 0.00 0.00 3.51
261 262 4.608774 TTGCTTGGCCCTGCTGCT 62.609 61.111 16.38 0.00 0.00 4.24
262 263 4.065281 CTTGCTTGGCCCTGCTGC 62.065 66.667 16.38 7.02 0.00 5.25
263 264 1.874345 CTTCTTGCTTGGCCCTGCTG 61.874 60.000 16.38 10.21 0.00 4.41
264 265 1.605738 CTTCTTGCTTGGCCCTGCT 60.606 57.895 16.38 0.00 0.00 4.24
265 266 1.593296 CTCTTCTTGCTTGGCCCTGC 61.593 60.000 0.00 4.99 0.00 4.85
266 267 1.593296 GCTCTTCTTGCTTGGCCCTG 61.593 60.000 0.00 0.00 0.00 4.45
267 268 1.303970 GCTCTTCTTGCTTGGCCCT 60.304 57.895 0.00 0.00 0.00 5.19
268 269 1.303970 AGCTCTTCTTGCTTGGCCC 60.304 57.895 0.00 0.00 37.52 5.80
269 270 1.593296 CCAGCTCTTCTTGCTTGGCC 61.593 60.000 0.00 0.00 38.92 5.36
270 271 1.593296 CCCAGCTCTTCTTGCTTGGC 61.593 60.000 0.00 0.00 38.92 4.52
271 272 0.251077 ACCCAGCTCTTCTTGCTTGG 60.251 55.000 4.60 4.60 45.47 3.61
272 273 0.879765 CACCCAGCTCTTCTTGCTTG 59.120 55.000 0.00 0.00 38.92 4.01
273 274 0.767375 TCACCCAGCTCTTCTTGCTT 59.233 50.000 0.00 0.00 38.92 3.91
274 275 0.990374 ATCACCCAGCTCTTCTTGCT 59.010 50.000 0.00 0.00 42.06 3.91
275 276 1.093159 CATCACCCAGCTCTTCTTGC 58.907 55.000 0.00 0.00 0.00 4.01
276 277 1.004044 ACCATCACCCAGCTCTTCTTG 59.996 52.381 0.00 0.00 0.00 3.02
277 278 1.366319 ACCATCACCCAGCTCTTCTT 58.634 50.000 0.00 0.00 0.00 2.52
278 279 2.254152 TACCATCACCCAGCTCTTCT 57.746 50.000 0.00 0.00 0.00 2.85
279 280 3.471680 GATTACCATCACCCAGCTCTTC 58.528 50.000 0.00 0.00 0.00 2.87
280 281 2.158900 CGATTACCATCACCCAGCTCTT 60.159 50.000 0.00 0.00 0.00 2.85
281 282 1.414181 CGATTACCATCACCCAGCTCT 59.586 52.381 0.00 0.00 0.00 4.09
282 283 1.412710 TCGATTACCATCACCCAGCTC 59.587 52.381 0.00 0.00 0.00 4.09
283 284 1.496060 TCGATTACCATCACCCAGCT 58.504 50.000 0.00 0.00 0.00 4.24
284 285 2.550830 ATCGATTACCATCACCCAGC 57.449 50.000 0.00 0.00 0.00 4.85
285 286 3.071602 AGGAATCGATTACCATCACCCAG 59.928 47.826 16.94 0.00 0.00 4.45
286 287 3.045634 AGGAATCGATTACCATCACCCA 58.954 45.455 16.94 0.00 0.00 4.51
287 288 3.771577 AGGAATCGATTACCATCACCC 57.228 47.619 16.94 8.31 0.00 4.61
288 289 5.469084 GGTAAAGGAATCGATTACCATCACC 59.531 44.000 16.94 14.36 45.09 4.02
289 290 6.541111 GGTAAAGGAATCGATTACCATCAC 57.459 41.667 16.94 9.59 45.09 3.06
294 295 6.110707 TGTTCAGGTAAAGGAATCGATTACC 58.889 40.000 16.94 16.47 45.76 2.85
295 296 7.494625 TCATGTTCAGGTAAAGGAATCGATTAC 59.505 37.037 12.76 12.76 0.00 1.89
296 297 7.561251 TCATGTTCAGGTAAAGGAATCGATTA 58.439 34.615 11.38 0.00 0.00 1.75
297 298 6.414732 TCATGTTCAGGTAAAGGAATCGATT 58.585 36.000 11.20 11.20 0.00 3.34
298 299 5.989477 TCATGTTCAGGTAAAGGAATCGAT 58.011 37.500 0.00 0.00 0.00 3.59
299 300 5.414789 TCATGTTCAGGTAAAGGAATCGA 57.585 39.130 0.00 0.00 0.00 3.59
300 301 5.163754 GGTTCATGTTCAGGTAAAGGAATCG 60.164 44.000 0.00 0.00 0.00 3.34
301 302 5.710099 TGGTTCATGTTCAGGTAAAGGAATC 59.290 40.000 0.00 0.00 0.00 2.52
302 303 5.640147 TGGTTCATGTTCAGGTAAAGGAAT 58.360 37.500 0.00 0.00 0.00 3.01
303 304 5.055265 TGGTTCATGTTCAGGTAAAGGAA 57.945 39.130 0.00 0.00 0.00 3.36
304 305 4.715534 TGGTTCATGTTCAGGTAAAGGA 57.284 40.909 0.00 0.00 0.00 3.36
305 306 5.068460 TGTTTGGTTCATGTTCAGGTAAAGG 59.932 40.000 0.00 0.00 0.00 3.11
306 307 6.142818 TGTTTGGTTCATGTTCAGGTAAAG 57.857 37.500 0.00 0.00 0.00 1.85
307 308 6.531503 TTGTTTGGTTCATGTTCAGGTAAA 57.468 33.333 0.00 0.00 0.00 2.01
308 309 6.153680 AGTTTGTTTGGTTCATGTTCAGGTAA 59.846 34.615 0.00 0.00 0.00 2.85
309 310 5.654650 AGTTTGTTTGGTTCATGTTCAGGTA 59.345 36.000 0.00 0.00 0.00 3.08
310 311 4.466015 AGTTTGTTTGGTTCATGTTCAGGT 59.534 37.500 0.00 0.00 0.00 4.00
311 312 5.009854 AGTTTGTTTGGTTCATGTTCAGG 57.990 39.130 0.00 0.00 0.00 3.86
312 313 5.220453 GCAAGTTTGTTTGGTTCATGTTCAG 60.220 40.000 0.00 0.00 0.00 3.02
313 314 4.629200 GCAAGTTTGTTTGGTTCATGTTCA 59.371 37.500 0.00 0.00 0.00 3.18
314 315 4.629200 TGCAAGTTTGTTTGGTTCATGTTC 59.371 37.500 0.00 0.00 0.00 3.18
315 316 4.573900 TGCAAGTTTGTTTGGTTCATGTT 58.426 34.783 0.00 0.00 0.00 2.71
316 317 4.199432 TGCAAGTTTGTTTGGTTCATGT 57.801 36.364 0.00 0.00 0.00 3.21
317 318 5.542616 TTTGCAAGTTTGTTTGGTTCATG 57.457 34.783 0.00 0.00 0.00 3.07
318 319 6.566197 TTTTTGCAAGTTTGTTTGGTTCAT 57.434 29.167 0.00 0.00 0.00 2.57
338 339 7.255836 GCCTTTAAGGAGGTGTAATCAGTTTTT 60.256 37.037 16.18 0.00 37.67 1.94
339 340 6.208797 GCCTTTAAGGAGGTGTAATCAGTTTT 59.791 38.462 16.18 0.00 37.67 2.43
340 341 5.710567 GCCTTTAAGGAGGTGTAATCAGTTT 59.289 40.000 16.18 0.00 37.67 2.66
341 342 5.014228 AGCCTTTAAGGAGGTGTAATCAGTT 59.986 40.000 16.18 0.00 37.67 3.16
342 343 4.536489 AGCCTTTAAGGAGGTGTAATCAGT 59.464 41.667 16.18 0.00 37.67 3.41
343 344 4.878397 CAGCCTTTAAGGAGGTGTAATCAG 59.122 45.833 16.18 0.00 37.67 2.90
344 345 4.843728 CAGCCTTTAAGGAGGTGTAATCA 58.156 43.478 16.18 0.00 37.67 2.57
345 346 3.628032 GCAGCCTTTAAGGAGGTGTAATC 59.372 47.826 16.18 0.00 37.67 1.75
346 347 3.621558 GCAGCCTTTAAGGAGGTGTAAT 58.378 45.455 16.18 0.00 37.67 1.89
347 348 2.614481 CGCAGCCTTTAAGGAGGTGTAA 60.614 50.000 16.18 0.00 37.67 2.41
348 349 1.066430 CGCAGCCTTTAAGGAGGTGTA 60.066 52.381 16.18 0.00 37.67 2.90
349 350 0.321653 CGCAGCCTTTAAGGAGGTGT 60.322 55.000 16.18 0.00 37.67 4.16
350 351 0.036388 TCGCAGCCTTTAAGGAGGTG 60.036 55.000 16.18 11.80 37.67 4.00
351 352 0.912486 ATCGCAGCCTTTAAGGAGGT 59.088 50.000 16.18 0.00 37.67 3.85
352 353 1.139853 AGATCGCAGCCTTTAAGGAGG 59.860 52.381 16.18 6.58 37.67 4.30
353 354 2.159043 TCAGATCGCAGCCTTTAAGGAG 60.159 50.000 16.18 7.34 37.67 3.69
354 355 1.831106 TCAGATCGCAGCCTTTAAGGA 59.169 47.619 16.18 0.00 37.67 3.36
355 356 2.315925 TCAGATCGCAGCCTTTAAGG 57.684 50.000 6.64 6.64 38.80 2.69
356 357 4.084849 CGTAATCAGATCGCAGCCTTTAAG 60.085 45.833 0.00 0.00 0.00 1.85
357 358 3.802139 CGTAATCAGATCGCAGCCTTTAA 59.198 43.478 0.00 0.00 0.00 1.52
358 359 3.181479 ACGTAATCAGATCGCAGCCTTTA 60.181 43.478 0.00 0.00 0.00 1.85
359 360 2.205074 CGTAATCAGATCGCAGCCTTT 58.795 47.619 0.00 0.00 0.00 3.11
360 361 1.137086 ACGTAATCAGATCGCAGCCTT 59.863 47.619 0.00 0.00 0.00 4.35
361 362 0.747255 ACGTAATCAGATCGCAGCCT 59.253 50.000 0.00 0.00 0.00 4.58
362 363 1.258982 CAACGTAATCAGATCGCAGCC 59.741 52.381 0.00 0.00 0.00 4.85
363 364 2.034507 GTCAACGTAATCAGATCGCAGC 60.035 50.000 0.00 0.00 0.00 5.25
364 365 2.214244 CGTCAACGTAATCAGATCGCAG 59.786 50.000 0.00 0.00 34.11 5.18
365 366 2.182014 CGTCAACGTAATCAGATCGCA 58.818 47.619 0.00 0.00 34.11 5.10
366 367 1.072089 GCGTCAACGTAATCAGATCGC 60.072 52.381 4.29 0.00 42.22 4.58
367 368 2.214244 CAGCGTCAACGTAATCAGATCG 59.786 50.000 4.29 0.00 42.22 3.69
368 369 2.034507 GCAGCGTCAACGTAATCAGATC 60.035 50.000 4.29 0.00 42.22 2.75
369 370 1.927174 GCAGCGTCAACGTAATCAGAT 59.073 47.619 4.29 0.00 42.22 2.90
370 371 1.346365 GCAGCGTCAACGTAATCAGA 58.654 50.000 4.29 0.00 42.22 3.27
371 372 0.370273 GGCAGCGTCAACGTAATCAG 59.630 55.000 4.29 0.00 42.22 2.90
372 373 0.037697 AGGCAGCGTCAACGTAATCA 60.038 50.000 4.29 0.00 42.22 2.57
373 374 1.076332 AAGGCAGCGTCAACGTAATC 58.924 50.000 4.29 0.00 42.22 1.75
374 375 2.373540 TAAGGCAGCGTCAACGTAAT 57.626 45.000 4.29 0.00 42.22 1.89
375 376 1.794116 GTTAAGGCAGCGTCAACGTAA 59.206 47.619 4.29 0.00 42.22 3.18
376 377 1.421382 GTTAAGGCAGCGTCAACGTA 58.579 50.000 4.29 0.00 42.22 3.57
377 378 1.226030 GGTTAAGGCAGCGTCAACGT 61.226 55.000 4.29 0.00 42.22 3.99
378 379 1.225376 TGGTTAAGGCAGCGTCAACG 61.225 55.000 0.00 0.00 43.27 4.10
379 380 1.165270 ATGGTTAAGGCAGCGTCAAC 58.835 50.000 0.00 0.00 0.00 3.18
380 381 1.904287 AATGGTTAAGGCAGCGTCAA 58.096 45.000 0.00 0.00 0.00 3.18
381 382 1.810151 GAAATGGTTAAGGCAGCGTCA 59.190 47.619 0.00 0.00 0.00 4.35
382 383 2.084546 AGAAATGGTTAAGGCAGCGTC 58.915 47.619 0.00 0.00 0.00 5.19
383 384 1.812571 CAGAAATGGTTAAGGCAGCGT 59.187 47.619 0.00 0.00 0.00 5.07
384 385 1.812571 ACAGAAATGGTTAAGGCAGCG 59.187 47.619 0.00 0.00 0.00 5.18
385 386 3.181496 GCTACAGAAATGGTTAAGGCAGC 60.181 47.826 0.00 0.00 0.00 5.25
386 387 3.378427 GGCTACAGAAATGGTTAAGGCAG 59.622 47.826 0.00 0.00 0.00 4.85
387 388 3.245087 TGGCTACAGAAATGGTTAAGGCA 60.245 43.478 0.00 0.00 35.93 4.75
388 389 3.352648 TGGCTACAGAAATGGTTAAGGC 58.647 45.455 0.00 0.00 0.00 4.35
389 390 5.242838 TGTTTGGCTACAGAAATGGTTAAGG 59.757 40.000 0.00 0.00 0.00 2.69
390 391 6.149633 GTGTTTGGCTACAGAAATGGTTAAG 58.850 40.000 0.00 0.00 0.00 1.85
391 392 5.010213 GGTGTTTGGCTACAGAAATGGTTAA 59.990 40.000 0.00 0.00 0.00 2.01
392 393 4.521256 GGTGTTTGGCTACAGAAATGGTTA 59.479 41.667 0.00 0.00 0.00 2.85
393 394 3.320826 GGTGTTTGGCTACAGAAATGGTT 59.679 43.478 0.00 0.00 0.00 3.67
394 395 2.890945 GGTGTTTGGCTACAGAAATGGT 59.109 45.455 0.00 0.00 0.00 3.55
395 396 3.157087 AGGTGTTTGGCTACAGAAATGG 58.843 45.455 0.00 0.00 0.00 3.16
396 397 3.191371 GGAGGTGTTTGGCTACAGAAATG 59.809 47.826 0.00 0.00 0.00 2.32
397 398 3.074538 AGGAGGTGTTTGGCTACAGAAAT 59.925 43.478 0.00 0.00 0.00 2.17
398 399 2.441750 AGGAGGTGTTTGGCTACAGAAA 59.558 45.455 0.00 0.00 0.00 2.52
399 400 2.054799 AGGAGGTGTTTGGCTACAGAA 58.945 47.619 0.00 0.00 0.00 3.02
400 401 1.729586 AGGAGGTGTTTGGCTACAGA 58.270 50.000 0.00 0.00 0.00 3.41
401 402 2.568623 AAGGAGGTGTTTGGCTACAG 57.431 50.000 0.00 0.00 0.00 2.74
402 403 3.306472 AAAAGGAGGTGTTTGGCTACA 57.694 42.857 0.00 0.00 0.00 2.74
403 404 4.319984 CGTTAAAAGGAGGTGTTTGGCTAC 60.320 45.833 0.00 0.00 0.00 3.58
404 405 3.816523 CGTTAAAAGGAGGTGTTTGGCTA 59.183 43.478 0.00 0.00 0.00 3.93
405 406 2.621526 CGTTAAAAGGAGGTGTTTGGCT 59.378 45.455 0.00 0.00 0.00 4.75
406 407 2.287970 CCGTTAAAAGGAGGTGTTTGGC 60.288 50.000 0.00 0.00 0.00 4.52
407 408 3.004002 GTCCGTTAAAAGGAGGTGTTTGG 59.996 47.826 1.49 0.00 38.65 3.28
408 409 3.004002 GGTCCGTTAAAAGGAGGTGTTTG 59.996 47.826 1.49 0.00 38.65 2.93
409 410 3.117776 AGGTCCGTTAAAAGGAGGTGTTT 60.118 43.478 1.49 0.00 38.65 2.83
410 411 2.440627 AGGTCCGTTAAAAGGAGGTGTT 59.559 45.455 1.49 0.00 38.65 3.32
411 412 2.052468 AGGTCCGTTAAAAGGAGGTGT 58.948 47.619 1.49 0.00 38.65 4.16
412 413 2.038033 TCAGGTCCGTTAAAAGGAGGTG 59.962 50.000 1.49 3.29 38.65 4.00
413 414 2.302157 CTCAGGTCCGTTAAAAGGAGGT 59.698 50.000 1.49 0.00 38.65 3.85
414 415 2.935676 GCTCAGGTCCGTTAAAAGGAGG 60.936 54.545 1.49 0.00 38.65 4.30
415 416 2.347731 GCTCAGGTCCGTTAAAAGGAG 58.652 52.381 1.49 0.00 38.65 3.69
416 417 1.002773 GGCTCAGGTCCGTTAAAAGGA 59.997 52.381 0.00 0.00 34.99 3.36
417 418 1.003233 AGGCTCAGGTCCGTTAAAAGG 59.997 52.381 0.00 0.00 0.00 3.11
418 419 2.076863 CAGGCTCAGGTCCGTTAAAAG 58.923 52.381 0.00 0.00 0.00 2.27
419 420 1.271163 CCAGGCTCAGGTCCGTTAAAA 60.271 52.381 0.00 0.00 0.00 1.52
471 477 3.120373 GCTTTGTTGAGAAGAGCTGCTAC 60.120 47.826 0.15 0.00 0.00 3.58
472 478 3.070018 GCTTTGTTGAGAAGAGCTGCTA 58.930 45.455 0.15 0.00 0.00 3.49
473 479 1.878734 GCTTTGTTGAGAAGAGCTGCT 59.121 47.619 0.00 0.00 0.00 4.24
612 619 3.587797 ATTGCAGTTTTGAGCCAGATG 57.412 42.857 0.00 0.00 0.00 2.90
632 639 3.230134 AGCAGTTTGGTTTTGCAGGATA 58.770 40.909 0.00 0.00 40.22 2.59
748 757 6.067263 ACATTTCGCAGATCTAGTCTAGAC 57.933 41.667 15.41 15.41 37.69 2.59
765 774 7.410120 AGGTGATATTTCCTCCAAACATTTC 57.590 36.000 0.00 0.00 0.00 2.17
784 793 9.841295 AACTAACAGTTTTAACTCATAAGGTGA 57.159 29.630 0.00 0.00 34.11 4.02
807 816 5.731591 AGCTAAGCGTATTAAGGAACAACT 58.268 37.500 0.00 0.00 0.00 3.16
822 831 5.859114 AGATACACGAATTATGAGCTAAGCG 59.141 40.000 0.00 0.00 0.00 4.68
996 1010 3.055719 ACAACCTCGGCCATTGCG 61.056 61.111 2.24 0.00 38.85 4.85
1021 1035 1.033746 CCGATCTTTGCCACTGCCAT 61.034 55.000 0.00 0.00 36.33 4.40
1603 2093 1.140852 TCCCATACCATGCAGCACTAC 59.859 52.381 0.00 0.00 0.00 2.73
2744 3417 4.262036 GCACCGACATATATCTGGACTTCA 60.262 45.833 0.00 0.00 0.00 3.02
3200 3877 1.653151 GTAGGAAAGGTGTCGCATCC 58.347 55.000 0.00 0.00 0.00 3.51
4035 5641 0.169009 CTCTGTCGCATCTGACACGA 59.831 55.000 0.00 0.24 43.62 4.35
4036 5642 1.409227 GCTCTGTCGCATCTGACACG 61.409 60.000 0.00 0.00 43.62 4.49
4182 5789 2.423446 GACCTGGCCTAGCATCGG 59.577 66.667 3.32 0.00 0.00 4.18
4188 5795 1.682684 ACCTCACGACCTGGCCTAG 60.683 63.158 3.32 0.00 0.00 3.02
4273 7337 1.760613 AGAGAAACTCACCGGTGAACA 59.239 47.619 35.36 16.21 39.39 3.18
4367 7544 2.490902 GGTGGGGAATCTGAAAACCACT 60.491 50.000 17.58 0.00 45.71 4.00
4388 7565 4.148825 CCGCGAACTCCTCCCTGG 62.149 72.222 8.23 0.00 37.10 4.45
4428 7611 1.104630 GGAGGAACCCTAGAGTGTCG 58.895 60.000 0.00 0.00 31.76 4.35
4599 7811 2.414293 CCAGTACAGGAGAAAGACGACG 60.414 54.545 0.00 0.00 0.00 5.12
4627 7867 0.965866 AGTGCCCGAGAACGAGATGA 60.966 55.000 0.00 0.00 42.66 2.92
4664 7904 1.067283 AGAGATGTCGTGCAGAACCAG 60.067 52.381 0.00 0.00 0.00 4.00
4678 7918 1.365633 GGCTGTCGGGCTAGAGATG 59.634 63.158 0.00 0.00 37.53 2.90
4731 7975 7.778083 CATGAATCCATGGAAAAGAAGATGAA 58.222 34.615 20.67 0.00 44.88 2.57
4808 8066 3.002862 TGCACGTTCCAACAATTACAGAC 59.997 43.478 0.00 0.00 0.00 3.51
4897 8155 7.195646 CAGATGTCATGTTACACAAAACTGTT 58.804 34.615 0.00 0.00 30.75 3.16
4965 8228 4.619973 TGGCAATTAAGAAACTTGTGCTG 58.380 39.130 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.