Multiple sequence alignment - TraesCS6B01G149500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G149500 chr6B 100.000 3435 0 0 1 3435 150667478 150664044 0.000000e+00 6344.0
1 TraesCS6B01G149500 chr6D 88.704 1080 79 27 2075 3118 77863576 77862504 0.000000e+00 1279.0
2 TraesCS6B01G149500 chr6D 92.048 830 47 6 1218 2035 77864477 77863655 0.000000e+00 1149.0
3 TraesCS6B01G149500 chr6D 89.852 877 72 11 316 1183 77865431 77864563 0.000000e+00 1110.0
4 TraesCS6B01G149500 chr6D 80.952 357 42 15 1 335 77865690 77865338 3.400000e-65 259.0
5 TraesCS6B01G149500 chr6D 97.368 114 3 0 3322 3435 77838892 77838779 9.730000e-46 195.0
6 TraesCS6B01G149500 chr6D 92.126 127 9 1 3133 3258 77859105 77858979 9.800000e-41 178.0
7 TraesCS6B01G149500 chr6D 94.030 67 4 0 3322 3388 77840617 77840551 6.060000e-18 102.0
8 TraesCS6B01G149500 chr6A 92.258 775 47 7 1273 2035 93632633 93631860 0.000000e+00 1086.0
9 TraesCS6B01G149500 chr6A 88.852 897 65 15 316 1181 93633793 93632901 0.000000e+00 1070.0
10 TraesCS6B01G149500 chr6A 91.168 736 42 14 2069 2788 93631781 93631053 0.000000e+00 977.0
11 TraesCS6B01G149500 chr6A 86.735 196 22 3 1 195 93762634 93762442 7.470000e-52 215.0
12 TraesCS6B01G149500 chr6A 92.086 139 8 2 2776 2913 93623877 93623741 3.500000e-45 193.0
13 TraesCS6B01G149500 chr6A 94.737 114 6 0 3322 3435 93529363 93529250 9.800000e-41 178.0
14 TraesCS6B01G149500 chr6A 92.727 110 7 1 3133 3241 93622334 93622225 1.280000e-34 158.0
15 TraesCS6B01G149500 chr6A 89.815 108 11 0 3322 3429 93465790 93465683 4.620000e-29 139.0
16 TraesCS6B01G149500 chr6A 92.537 67 5 0 3322 3388 93621275 93621209 2.820000e-16 97.1
17 TraesCS6B01G149500 chr6A 82.353 85 2 7 1183 1254 93632867 93632783 1.030000e-05 62.1
18 TraesCS6B01G149500 chr5D 84.146 164 25 1 2942 3105 457266711 457266549 1.280000e-34 158.0
19 TraesCS6B01G149500 chr1B 79.878 164 29 4 2943 3105 640474405 640474245 2.170000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G149500 chr6B 150664044 150667478 3434 True 6344.000 6344 100.00000 1 3435 1 chr6B.!!$R1 3434
1 TraesCS6B01G149500 chr6D 77858979 77865690 6711 True 795.000 1279 88.73640 1 3258 5 chr6D.!!$R2 3257
2 TraesCS6B01G149500 chr6A 93631053 93633793 2740 True 798.775 1086 88.65775 316 2788 4 chr6A.!!$R5 2472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.178831 AGGGGTTGGAGGAAGACCAT 60.179 55.0 0.00 0.0 37.26 3.55 F
894 936 0.247185 CCGTGCAATTTTCAGGCCAT 59.753 50.0 5.01 0.0 0.00 4.40 F
2063 2327 0.251634 CAAGAAGGAGGAGGAGGTGC 59.748 60.0 0.00 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2297 0.252927 ACCTCCTCCTCCTTCTTGGG 60.253 60.0 0.00 0.0 36.20 4.12 R
2167 2467 0.178767 CCGCCTTGATGTCATCCTCA 59.821 55.0 10.36 0.0 0.00 3.86 R
3411 7154 0.178950 TCTGAGACACCACCTCTGCT 60.179 55.0 0.00 0.0 32.03 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.688477 AGATCTCACCTTGGGGATCTC 58.312 52.381 0.00 0.00 40.25 2.75
34 35 1.079490 TCTCACCTTGGGGATCTCTGT 59.921 52.381 0.00 0.00 36.25 3.41
39 40 1.415659 CCTTGGGGATCTCTGTAGCAG 59.584 57.143 0.00 0.00 33.58 4.24
78 79 7.809880 ATATAGGATGGTTTAAGGGTAGGAC 57.190 40.000 0.00 0.00 0.00 3.85
91 92 1.192428 GTAGGACGATGTGAGGGGTT 58.808 55.000 0.00 0.00 0.00 4.11
99 100 0.995024 ATGTGAGGGGTTGGAGGAAG 59.005 55.000 0.00 0.00 0.00 3.46
102 103 0.840722 TGAGGGGTTGGAGGAAGACC 60.841 60.000 0.00 0.00 0.00 3.85
104 105 0.178831 AGGGGTTGGAGGAAGACCAT 60.179 55.000 0.00 0.00 37.26 3.55
108 109 1.614317 GGTTGGAGGAAGACCATGGTG 60.614 57.143 25.52 0.00 37.26 4.17
164 166 7.883229 TCAAAAAGAAAACTTTCAGACAACC 57.117 32.000 5.07 0.00 39.61 3.77
167 169 6.451064 AAAGAAAACTTTCAGACAACCGAT 57.549 33.333 5.07 0.00 39.61 4.18
169 171 4.881850 AGAAAACTTTCAGACAACCGATGT 59.118 37.500 5.07 0.00 41.52 3.06
186 188 1.727062 TGTGGGCAATTTGGTTGGAT 58.273 45.000 0.00 0.00 38.29 3.41
192 194 1.275856 GCAATTTGGTTGGATGGCTCA 59.724 47.619 0.00 0.00 38.29 4.26
193 195 2.932187 GCAATTTGGTTGGATGGCTCAC 60.932 50.000 0.00 0.00 38.29 3.51
197 199 0.537143 TGGTTGGATGGCTCACACAC 60.537 55.000 0.00 0.00 0.00 3.82
209 211 3.133003 GGCTCACACACTGTAGATATGGT 59.867 47.826 0.00 0.00 0.00 3.55
210 212 4.363999 GCTCACACACTGTAGATATGGTC 58.636 47.826 0.00 0.00 0.00 4.02
211 213 4.098654 GCTCACACACTGTAGATATGGTCT 59.901 45.833 0.00 0.00 41.11 3.85
212 214 5.394663 GCTCACACACTGTAGATATGGTCTT 60.395 44.000 0.00 0.00 38.42 3.01
213 215 6.605471 TCACACACTGTAGATATGGTCTTT 57.395 37.500 0.00 0.00 38.42 2.52
236 256 3.924114 TTTATGAAAGGAGATCCGCCA 57.076 42.857 5.14 0.00 42.08 5.69
243 263 2.160721 AGGAGATCCGCCAGTTTAGA 57.839 50.000 5.14 0.00 42.08 2.10
244 264 2.683768 AGGAGATCCGCCAGTTTAGAT 58.316 47.619 5.14 0.00 42.08 1.98
245 265 2.630580 AGGAGATCCGCCAGTTTAGATC 59.369 50.000 5.14 0.00 42.08 2.75
246 266 2.630580 GGAGATCCGCCAGTTTAGATCT 59.369 50.000 0.00 0.00 46.22 2.75
247 267 3.070302 GGAGATCCGCCAGTTTAGATCTT 59.930 47.826 0.00 0.00 44.18 2.40
248 268 4.281182 GGAGATCCGCCAGTTTAGATCTTA 59.719 45.833 0.00 0.00 44.18 2.10
249 269 5.461032 AGATCCGCCAGTTTAGATCTTAG 57.539 43.478 0.00 0.00 42.09 2.18
250 270 4.282195 AGATCCGCCAGTTTAGATCTTAGG 59.718 45.833 0.00 0.00 42.09 2.69
251 271 3.371965 TCCGCCAGTTTAGATCTTAGGT 58.628 45.455 0.00 0.00 0.00 3.08
252 272 3.773119 TCCGCCAGTTTAGATCTTAGGTT 59.227 43.478 0.00 0.00 0.00 3.50
253 273 4.957954 TCCGCCAGTTTAGATCTTAGGTTA 59.042 41.667 0.00 0.00 0.00 2.85
254 274 5.068723 TCCGCCAGTTTAGATCTTAGGTTAG 59.931 44.000 0.00 0.00 0.00 2.34
255 275 5.290386 CGCCAGTTTAGATCTTAGGTTAGG 58.710 45.833 0.00 0.00 0.00 2.69
256 276 5.163437 CGCCAGTTTAGATCTTAGGTTAGGT 60.163 44.000 0.00 0.00 0.00 3.08
257 277 6.049790 GCCAGTTTAGATCTTAGGTTAGGTG 58.950 44.000 0.00 0.00 0.00 4.00
258 278 6.351966 GCCAGTTTAGATCTTAGGTTAGGTGT 60.352 42.308 0.00 0.00 0.00 4.16
259 279 7.621796 CCAGTTTAGATCTTAGGTTAGGTGTT 58.378 38.462 0.00 0.00 0.00 3.32
260 280 8.101419 CCAGTTTAGATCTTAGGTTAGGTGTTT 58.899 37.037 0.00 0.00 0.00 2.83
261 281 9.503399 CAGTTTAGATCTTAGGTTAGGTGTTTT 57.497 33.333 0.00 0.00 0.00 2.43
262 282 9.722184 AGTTTAGATCTTAGGTTAGGTGTTTTC 57.278 33.333 0.00 0.00 0.00 2.29
263 283 8.944029 GTTTAGATCTTAGGTTAGGTGTTTTCC 58.056 37.037 0.00 0.00 0.00 3.13
264 284 6.063496 AGATCTTAGGTTAGGTGTTTTCCC 57.937 41.667 0.00 0.00 0.00 3.97
265 285 5.791141 AGATCTTAGGTTAGGTGTTTTCCCT 59.209 40.000 0.00 0.00 36.04 4.20
266 286 6.964086 AGATCTTAGGTTAGGTGTTTTCCCTA 59.036 38.462 0.00 0.00 33.35 3.53
267 287 6.364568 TCTTAGGTTAGGTGTTTTCCCTAC 57.635 41.667 0.00 0.00 34.30 3.18
268 288 6.086775 TCTTAGGTTAGGTGTTTTCCCTACT 58.913 40.000 0.00 0.00 34.30 2.57
269 289 4.635699 AGGTTAGGTGTTTTCCCTACTG 57.364 45.455 0.00 0.00 34.30 2.74
270 290 4.237018 AGGTTAGGTGTTTTCCCTACTGA 58.763 43.478 0.00 0.00 34.30 3.41
271 291 4.286291 AGGTTAGGTGTTTTCCCTACTGAG 59.714 45.833 0.00 0.00 34.30 3.35
272 292 4.041321 GGTTAGGTGTTTTCCCTACTGAGT 59.959 45.833 0.00 0.00 34.30 3.41
273 293 5.246883 GGTTAGGTGTTTTCCCTACTGAGTA 59.753 44.000 0.00 0.00 34.30 2.59
274 294 6.396450 GTTAGGTGTTTTCCCTACTGAGTAG 58.604 44.000 12.62 12.62 34.30 2.57
283 303 2.368311 CTACTGAGTAGGACCCCTCC 57.632 60.000 11.77 0.00 34.61 4.30
284 304 0.549950 TACTGAGTAGGACCCCTCCG 59.450 60.000 6.37 3.29 42.22 4.63
285 305 1.455959 CTGAGTAGGACCCCTCCGG 60.456 68.421 0.00 0.00 42.22 5.14
295 315 2.265526 ACCCCTCCGGTTTAGATCTT 57.734 50.000 0.00 0.00 45.36 2.40
296 316 3.409804 ACCCCTCCGGTTTAGATCTTA 57.590 47.619 0.00 0.00 45.36 2.10
297 317 3.306613 ACCCCTCCGGTTTAGATCTTAG 58.693 50.000 0.00 0.00 45.36 2.18
298 318 2.633481 CCCCTCCGGTTTAGATCTTAGG 59.367 54.545 0.00 0.00 0.00 2.69
299 319 3.306613 CCCTCCGGTTTAGATCTTAGGT 58.693 50.000 0.00 0.00 0.00 3.08
300 320 3.069729 CCCTCCGGTTTAGATCTTAGGTG 59.930 52.174 0.00 0.00 0.00 4.00
301 321 3.705072 CCTCCGGTTTAGATCTTAGGTGT 59.295 47.826 0.00 0.00 0.00 4.16
302 322 4.161754 CCTCCGGTTTAGATCTTAGGTGTT 59.838 45.833 0.00 0.00 0.00 3.32
303 323 5.338137 CCTCCGGTTTAGATCTTAGGTGTTT 60.338 44.000 0.00 0.00 0.00 2.83
304 324 5.727434 TCCGGTTTAGATCTTAGGTGTTTC 58.273 41.667 0.00 0.00 0.00 2.78
305 325 5.482878 TCCGGTTTAGATCTTAGGTGTTTCT 59.517 40.000 0.00 0.00 0.00 2.52
306 326 6.013984 TCCGGTTTAGATCTTAGGTGTTTCTT 60.014 38.462 0.00 0.00 0.00 2.52
307 327 6.653740 CCGGTTTAGATCTTAGGTGTTTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
308 328 7.148457 CCGGTTTAGATCTTAGGTGTTTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
309 329 7.148457 CGGTTTAGATCTTAGGTGTTTCTTTCC 60.148 40.741 0.00 0.00 0.00 3.13
310 330 7.883833 GGTTTAGATCTTAGGTGTTTCTTTCCT 59.116 37.037 0.00 0.00 35.60 3.36
311 331 8.722394 GTTTAGATCTTAGGTGTTTCTTTCCTG 58.278 37.037 0.00 0.00 33.34 3.86
312 332 5.810095 AGATCTTAGGTGTTTCTTTCCTGG 58.190 41.667 0.00 0.00 33.34 4.45
313 333 5.548056 AGATCTTAGGTGTTTCTTTCCTGGA 59.452 40.000 0.00 0.00 33.34 3.86
314 334 5.640158 TCTTAGGTGTTTCTTTCCTGGAA 57.360 39.130 4.68 4.68 33.34 3.53
343 363 4.832823 AGGTTGGGTGTTTTTCCTATTGAG 59.167 41.667 0.00 0.00 0.00 3.02
344 364 4.021456 GGTTGGGTGTTTTTCCTATTGAGG 60.021 45.833 0.00 0.00 45.35 3.86
381 405 9.238368 TGGTTTAGATATTAGGTGTTTTTCCAG 57.762 33.333 0.00 0.00 0.00 3.86
437 461 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
442 472 7.918076 AGAGAGAGAGAGAGAGAGAGTAAAAA 58.082 38.462 0.00 0.00 0.00 1.94
494 524 1.507141 CTGTGTTCAACTGACCGGGC 61.507 60.000 6.32 1.57 0.00 6.13
495 525 1.525077 GTGTTCAACTGACCGGGCA 60.525 57.895 11.16 11.16 0.00 5.36
509 540 1.892391 GGGCACTTGTATAGCGGCC 60.892 63.158 0.00 0.00 43.41 6.13
518 549 0.318784 GTATAGCGGCCTCGACTTGG 60.319 60.000 0.00 0.00 39.00 3.61
532 563 4.601084 TCGACTTGGAACCTATCTTCTCT 58.399 43.478 0.00 0.00 0.00 3.10
535 566 6.834451 TCGACTTGGAACCTATCTTCTCTAAT 59.166 38.462 0.00 0.00 0.00 1.73
576 607 8.020819 CCATGAAAGACTTTGCGAATTTTACTA 58.979 33.333 4.85 0.00 0.00 1.82
583 614 4.914312 TTGCGAATTTTACTACCTGACG 57.086 40.909 0.00 0.00 0.00 4.35
595 633 8.665643 TTTACTACCTGACGAATGAAAGAAAA 57.334 30.769 0.00 0.00 0.00 2.29
675 717 6.921307 CACATTGTATTACAGATGCGTAGGTA 59.079 38.462 13.94 0.00 0.00 3.08
683 725 3.149981 CAGATGCGTAGGTATGAGAGGA 58.850 50.000 0.00 0.00 0.00 3.71
687 729 2.029623 GCGTAGGTATGAGAGGAACCA 58.970 52.381 0.00 0.00 35.64 3.67
688 730 2.429610 GCGTAGGTATGAGAGGAACCAA 59.570 50.000 0.00 0.00 35.64 3.67
731 773 1.731433 CCAAGCCATGCGATTCTGGG 61.731 60.000 0.00 0.00 32.90 4.45
747 789 1.001641 GGGCATGAGCACTTGAGGT 60.002 57.895 0.00 0.00 42.33 3.85
748 790 0.610232 GGGCATGAGCACTTGAGGTT 60.610 55.000 0.00 0.00 42.33 3.50
773 815 3.691609 GCATGAACTTCTCCCCAACTTAG 59.308 47.826 0.00 0.00 0.00 2.18
797 839 6.608002 AGTCGGTTTCCTCTCTAACAATAGAT 59.392 38.462 0.00 0.00 37.52 1.98
798 840 7.124448 AGTCGGTTTCCTCTCTAACAATAGATT 59.876 37.037 0.00 0.00 37.52 2.40
831 873 1.244019 AACTGTTGCATTCGCCCTCC 61.244 55.000 0.00 0.00 37.32 4.30
894 936 0.247185 CCGTGCAATTTTCAGGCCAT 59.753 50.000 5.01 0.00 0.00 4.40
936 978 2.112190 CTTTGTCTCCTCCCTACCTCC 58.888 57.143 0.00 0.00 0.00 4.30
1131 1182 5.766150 TCGAGTTTCCATGTGTTGAAAAT 57.234 34.783 0.00 0.00 32.68 1.82
1181 1232 6.934645 AGTTCTTTTGATTAGACATGGTTCGA 59.065 34.615 0.00 0.00 0.00 3.71
1214 1297 9.974980 AACTCCAAAATACACGTTCAAAATTAT 57.025 25.926 0.00 0.00 0.00 1.28
1351 1594 2.096013 GCTAGGGTTGTTCTCGATTTGC 59.904 50.000 0.00 0.00 0.00 3.68
1370 1613 1.445582 CCTAACACCGCCACGTCTC 60.446 63.158 0.00 0.00 0.00 3.36
1386 1629 1.865340 GTCTCACGGTTGTCCTTTGTC 59.135 52.381 0.00 0.00 0.00 3.18
1401 1644 4.279922 TCCTTTGTCGATCTATATGCCGAA 59.720 41.667 0.00 0.00 32.60 4.30
1660 1903 2.338785 GCAGCAGAAGCCCAAGTCC 61.339 63.158 0.00 0.00 43.56 3.85
1746 1992 2.432628 GTCGTCCCGGCACAAGAG 60.433 66.667 0.00 0.00 0.00 2.85
1784 2036 4.329545 GCGAAGTGGACAGCCCCA 62.330 66.667 0.00 0.00 0.00 4.96
1832 2084 1.876156 CTGAAAGCAGCGTCTTTTCCT 59.124 47.619 7.49 0.00 36.50 3.36
1848 2100 3.526931 TTCCTTGGACGATCAGATCAC 57.473 47.619 11.12 3.95 0.00 3.06
1975 2227 2.747686 GTGGCGGAGGAACAGGAA 59.252 61.111 0.00 0.00 0.00 3.36
1980 2232 1.219393 CGGAGGAACAGGAAGAGGC 59.781 63.158 0.00 0.00 0.00 4.70
1983 2235 2.815647 GGAACAGGAAGAGGCGCG 60.816 66.667 0.00 0.00 0.00 6.86
2027 2282 4.521062 CCGCCGCAGAGAAGGAGG 62.521 72.222 0.00 0.00 40.93 4.30
2035 2290 2.028996 GCAGAGAAGGAGGAGGAGGAG 61.029 61.905 0.00 0.00 0.00 3.69
2037 2292 0.930726 GAGAAGGAGGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
2038 2293 0.933700 AGAAGGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
2040 2295 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
2041 2296 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2042 2297 1.152546 GAGGAGGAGGAGGAGGAGC 60.153 68.421 0.00 0.00 0.00 4.70
2045 2300 2.955246 AGGAGGAGGAGGAGCCCA 60.955 66.667 0.00 0.00 37.37 5.36
2056 2320 0.620121 AGGAGCCCAAGAAGGAGGAG 60.620 60.000 0.00 0.00 41.22 3.69
2058 2322 0.618968 GAGCCCAAGAAGGAGGAGGA 60.619 60.000 0.00 0.00 41.22 3.71
2059 2323 0.620121 AGCCCAAGAAGGAGGAGGAG 60.620 60.000 0.00 0.00 41.22 3.69
2062 2326 0.908198 CCAAGAAGGAGGAGGAGGTG 59.092 60.000 0.00 0.00 41.22 4.00
2063 2327 0.251634 CAAGAAGGAGGAGGAGGTGC 59.748 60.000 0.00 0.00 0.00 5.01
2065 2329 2.285743 AAGGAGGAGGAGGTGCCC 60.286 66.667 0.00 0.00 37.37 5.36
2066 2330 3.194025 AAGGAGGAGGAGGTGCCCA 62.194 63.158 0.00 0.00 37.37 5.36
2069 2333 2.612115 AGGAGGAGGTGCCCAAGG 60.612 66.667 0.00 0.00 37.37 3.61
2075 2345 2.612115 AGGTGCCCAAGGAGGAGG 60.612 66.667 0.00 0.00 41.22 4.30
2083 2353 0.398381 CCAAGGAGGAGGAGGAGGAG 60.398 65.000 0.00 0.00 41.22 3.69
2085 2355 0.858139 AAGGAGGAGGAGGAGGAGGT 60.858 60.000 0.00 0.00 0.00 3.85
2090 2390 3.615811 AGGAGGAGGAGGTGCCCA 61.616 66.667 0.00 0.00 37.37 5.36
2098 2398 0.772124 AGGAGGTGCCCAAGAAGGAA 60.772 55.000 0.00 0.00 41.22 3.36
2116 2416 2.841988 GCTCCTCCTGCTCCGGAT 60.842 66.667 3.57 0.00 31.43 4.18
2140 2440 1.440938 CCGTTGCCGAAGTGGACAAA 61.441 55.000 0.00 0.00 42.00 2.83
2148 2448 0.454452 GAAGTGGACAAAATCGCGGC 60.454 55.000 6.13 0.00 0.00 6.53
2149 2449 0.889186 AAGTGGACAAAATCGCGGCT 60.889 50.000 6.13 0.00 0.00 5.52
2195 2495 2.224159 ATCAAGGCGGAGGTGGTGT 61.224 57.895 0.00 0.00 0.00 4.16
2248 2548 2.808321 GGGAAGCGGTCGTTCGAC 60.808 66.667 15.66 15.66 34.65 4.20
2254 2554 3.164011 CGGTCGTTCGACGCTGAC 61.164 66.667 17.03 0.00 42.21 3.51
2350 2650 0.846693 AGGTGAACAAGGTGAAGGCT 59.153 50.000 0.00 0.00 0.00 4.58
2397 2697 2.663852 CGACAACGAAAGCCCCGT 60.664 61.111 0.00 0.00 42.66 5.28
2424 2724 3.423154 CAAGTCGCGGCTGAACCC 61.423 66.667 16.93 0.00 33.26 4.11
2444 2750 1.338674 CCCACGCCTGAACTACATTCA 60.339 52.381 0.00 0.00 45.39 2.57
2452 2758 3.123621 CCTGAACTACATTCAACGAGCAC 59.876 47.826 0.00 0.00 46.80 4.40
2484 2793 0.462047 CGTGCGCTTCCTTTATCCCT 60.462 55.000 9.73 0.00 0.00 4.20
2527 2836 1.131826 CCAATTTGTCGTCGTCGCC 59.868 57.895 0.00 0.00 36.96 5.54
2549 2858 6.749118 CGCCCACTTATCTATAATTACGGTAC 59.251 42.308 0.00 0.00 0.00 3.34
2590 2899 4.319515 AGGAAGATGATGGAGGGGTTATT 58.680 43.478 0.00 0.00 0.00 1.40
2634 2946 6.615316 TGATCAAGGAGGAAGATGGTGTATTA 59.385 38.462 0.00 0.00 0.00 0.98
2641 2954 9.670442 AGGAGGAAGATGGTGTATTATACTTTA 57.330 33.333 3.92 0.00 0.00 1.85
2724 3038 7.602517 TTTGGGAATTTTGTGTGTTTTACTG 57.397 32.000 0.00 0.00 0.00 2.74
2725 3039 5.112686 TGGGAATTTTGTGTGTTTTACTGC 58.887 37.500 0.00 0.00 0.00 4.40
2726 3040 4.509970 GGGAATTTTGTGTGTTTTACTGCC 59.490 41.667 0.00 0.00 0.00 4.85
2727 3041 4.208253 GGAATTTTGTGTGTTTTACTGCCG 59.792 41.667 0.00 0.00 0.00 5.69
2728 3042 2.196295 TTTGTGTGTTTTACTGCCGC 57.804 45.000 0.00 0.00 0.00 6.53
2729 3043 1.384525 TTGTGTGTTTTACTGCCGCT 58.615 45.000 0.00 0.00 0.00 5.52
2730 3044 0.660488 TGTGTGTTTTACTGCCGCTG 59.340 50.000 0.00 0.00 0.00 5.18
2794 3111 7.378181 ACCAACTAACAAAAGAATATGCCTTG 58.622 34.615 0.00 0.00 0.00 3.61
2862 3179 7.916977 TGAAGGCATAGATTGAATGAAAAATCG 59.083 33.333 0.00 0.00 37.77 3.34
2903 3220 9.794719 ATAATACTTAAAATCACTAAGCTCCCC 57.205 33.333 0.00 0.00 30.79 4.81
2915 3240 1.227973 GCTCCCCGGGCTTGAATAG 60.228 63.158 17.73 0.00 0.00 1.73
2929 3287 0.235926 GAATAGCGATTTCAGGCGGC 59.764 55.000 0.00 0.00 0.00 6.53
2934 3292 2.472909 CGATTTCAGGCGGCCTTCC 61.473 63.158 21.26 5.84 0.00 3.46
2936 3294 3.662117 ATTTCAGGCGGCCTTCCCC 62.662 63.158 21.26 0.00 0.00 4.81
2976 3334 9.699410 TGAGGGATGAACATAACTTTATTCATT 57.301 29.630 0.00 0.00 0.00 2.57
3004 3362 5.553123 ACGACAGTTTGTGGGATACATAAA 58.447 37.500 0.00 0.00 39.48 1.40
3020 3378 4.708177 ACATAAAGGATCATCGGGTTGAG 58.292 43.478 0.00 0.00 0.00 3.02
3021 3379 2.717639 AAAGGATCATCGGGTTGAGG 57.282 50.000 0.00 0.00 0.00 3.86
3032 3390 3.346426 GGTTGAGGAAGCCACATGT 57.654 52.632 0.00 0.00 0.00 3.21
3033 3391 0.883833 GGTTGAGGAAGCCACATGTG 59.116 55.000 19.31 19.31 0.00 3.21
3035 3393 1.537202 GTTGAGGAAGCCACATGTGAC 59.463 52.381 27.46 16.42 0.00 3.67
3042 3400 2.986290 CCACATGTGACGCCCCTA 59.014 61.111 27.46 0.00 0.00 3.53
3047 3405 1.073284 ACATGTGACGCCCCTAAACTT 59.927 47.619 0.00 0.00 0.00 2.66
3048 3406 1.468520 CATGTGACGCCCCTAAACTTG 59.531 52.381 0.00 0.00 0.00 3.16
3052 3410 3.008157 TGTGACGCCCCTAAACTTGATTA 59.992 43.478 0.00 0.00 0.00 1.75
3114 3472 1.202417 ACGACCTTCATGTAGCATCGG 60.202 52.381 20.46 9.08 32.56 4.18
3118 3476 3.270877 ACCTTCATGTAGCATCGGTTTC 58.729 45.455 0.00 0.00 0.00 2.78
3142 6884 0.107165 CGGTCTTCCCCATTCTTCCC 60.107 60.000 0.00 0.00 0.00 3.97
3144 6886 1.641192 GGTCTTCCCCATTCTTCCCTT 59.359 52.381 0.00 0.00 0.00 3.95
3167 6909 6.418057 TTGTTAATTGGGCTTGTTGATCTT 57.582 33.333 0.00 0.00 0.00 2.40
3200 6942 2.938451 GGCCTTTTTAATCAGCATTGGC 59.062 45.455 0.00 0.00 41.61 4.52
3220 6963 1.458209 GCATGGGCCTGGGCTATTT 60.458 57.895 20.47 0.00 41.60 1.40
3223 6966 1.133513 CATGGGCCTGGGCTATTTGTA 60.134 52.381 20.47 0.00 41.60 2.41
3231 6974 3.279434 CTGGGCTATTTGTAAGTGGGAC 58.721 50.000 0.00 0.00 0.00 4.46
3249 6992 2.618045 GGACGGGATGACTCATTTGGTT 60.618 50.000 0.00 0.00 0.00 3.67
3258 7001 6.587608 GGATGACTCATTTGGTTGATGTTTTC 59.412 38.462 0.00 0.00 0.00 2.29
3259 7002 5.841810 TGACTCATTTGGTTGATGTTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
3260 7003 5.598005 TGACTCATTTGGTTGATGTTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
3261 7004 6.098124 TGACTCATTTGGTTGATGTTTTCCTT 59.902 34.615 0.00 0.00 0.00 3.36
3262 7005 6.282930 ACTCATTTGGTTGATGTTTTCCTTG 58.717 36.000 0.00 0.00 0.00 3.61
3263 7006 5.055812 TCATTTGGTTGATGTTTTCCTTGC 58.944 37.500 0.00 0.00 0.00 4.01
3264 7007 3.467374 TTGGTTGATGTTTTCCTTGCC 57.533 42.857 0.00 0.00 0.00 4.52
3265 7008 2.676748 TGGTTGATGTTTTCCTTGCCT 58.323 42.857 0.00 0.00 0.00 4.75
3266 7009 2.627699 TGGTTGATGTTTTCCTTGCCTC 59.372 45.455 0.00 0.00 0.00 4.70
3267 7010 2.627699 GGTTGATGTTTTCCTTGCCTCA 59.372 45.455 0.00 0.00 0.00 3.86
3268 7011 3.069443 GGTTGATGTTTTCCTTGCCTCAA 59.931 43.478 0.00 0.00 0.00 3.02
3269 7012 4.442753 GGTTGATGTTTTCCTTGCCTCAAA 60.443 41.667 0.00 0.00 0.00 2.69
3270 7013 5.115480 GTTGATGTTTTCCTTGCCTCAAAA 58.885 37.500 0.00 0.00 0.00 2.44
3271 7014 5.350504 TGATGTTTTCCTTGCCTCAAAAA 57.649 34.783 0.00 0.00 0.00 1.94
3272 7015 5.358922 TGATGTTTTCCTTGCCTCAAAAAG 58.641 37.500 0.00 0.00 0.00 2.27
3273 7016 5.128499 TGATGTTTTCCTTGCCTCAAAAAGA 59.872 36.000 0.00 0.00 0.00 2.52
3274 7017 5.413309 TGTTTTCCTTGCCTCAAAAAGAA 57.587 34.783 0.00 0.00 0.00 2.52
3275 7018 5.799213 TGTTTTCCTTGCCTCAAAAAGAAA 58.201 33.333 0.00 0.00 0.00 2.52
3276 7019 6.234177 TGTTTTCCTTGCCTCAAAAAGAAAA 58.766 32.000 0.00 0.00 31.18 2.29
3277 7020 6.712547 TGTTTTCCTTGCCTCAAAAAGAAAAA 59.287 30.769 0.00 0.00 33.28 1.94
3298 7041 4.622260 AAATGGTCAATGTTTTCCCTGG 57.378 40.909 0.00 0.00 0.00 4.45
3299 7042 2.765689 TGGTCAATGTTTTCCCTGGT 57.234 45.000 0.00 0.00 0.00 4.00
3300 7043 2.593026 TGGTCAATGTTTTCCCTGGTC 58.407 47.619 0.00 0.00 0.00 4.02
3301 7044 2.091610 TGGTCAATGTTTTCCCTGGTCA 60.092 45.455 0.00 0.00 0.00 4.02
3302 7045 2.962421 GGTCAATGTTTTCCCTGGTCAA 59.038 45.455 0.00 0.00 0.00 3.18
3303 7046 3.386402 GGTCAATGTTTTCCCTGGTCAAA 59.614 43.478 0.00 0.00 0.00 2.69
3304 7047 4.501400 GGTCAATGTTTTCCCTGGTCAAAG 60.501 45.833 0.00 0.00 0.00 2.77
3305 7048 3.640967 TCAATGTTTTCCCTGGTCAAAGG 59.359 43.478 0.00 0.00 37.05 3.11
3306 7049 1.408969 TGTTTTCCCTGGTCAAAGGC 58.591 50.000 0.00 0.00 35.85 4.35
3307 7050 0.313987 GTTTTCCCTGGTCAAAGGCG 59.686 55.000 0.00 0.00 35.85 5.52
3308 7051 0.825840 TTTTCCCTGGTCAAAGGCGG 60.826 55.000 0.00 0.00 35.85 6.13
3309 7052 1.710996 TTTCCCTGGTCAAAGGCGGA 61.711 55.000 0.00 0.00 35.85 5.54
3310 7053 2.045926 CCCTGGTCAAAGGCGGAG 60.046 66.667 0.00 0.00 35.85 4.63
3311 7054 2.750350 CCTGGTCAAAGGCGGAGT 59.250 61.111 0.00 0.00 0.00 3.85
3312 7055 1.672356 CCTGGTCAAAGGCGGAGTG 60.672 63.158 0.00 0.00 0.00 3.51
3313 7056 1.672356 CTGGTCAAAGGCGGAGTGG 60.672 63.158 0.00 0.00 0.00 4.00
3314 7057 3.056328 GGTCAAAGGCGGAGTGGC 61.056 66.667 0.00 0.00 45.27 5.01
3324 7067 4.344865 GGAGTGGCGGCTGGGAAA 62.345 66.667 11.43 0.00 0.00 3.13
3325 7068 3.056328 GAGTGGCGGCTGGGAAAC 61.056 66.667 11.43 0.00 0.00 2.78
3326 7069 3.553095 GAGTGGCGGCTGGGAAACT 62.553 63.158 11.43 3.43 0.00 2.66
3327 7070 2.180159 GAGTGGCGGCTGGGAAACTA 62.180 60.000 11.43 0.00 0.00 2.24
3328 7071 2.038837 GTGGCGGCTGGGAAACTAC 61.039 63.158 11.43 0.00 0.00 2.73
3329 7072 2.437895 GGCGGCTGGGAAACTACC 60.438 66.667 0.00 0.00 0.00 3.18
3330 7073 2.669240 GCGGCTGGGAAACTACCT 59.331 61.111 0.00 0.00 0.00 3.08
3331 7074 1.449778 GCGGCTGGGAAACTACCTC 60.450 63.158 0.00 0.00 0.00 3.85
3332 7075 1.221021 CGGCTGGGAAACTACCTCC 59.779 63.158 0.00 0.00 0.00 4.30
3333 7076 1.550130 CGGCTGGGAAACTACCTCCA 61.550 60.000 0.00 0.00 34.34 3.86
3334 7077 0.253327 GGCTGGGAAACTACCTCCAG 59.747 60.000 0.00 0.00 46.93 3.86
3335 7078 0.984995 GCTGGGAAACTACCTCCAGT 59.015 55.000 9.55 0.00 46.17 4.00
3336 7079 1.351350 GCTGGGAAACTACCTCCAGTT 59.649 52.381 9.55 0.00 46.17 3.16
3337 7080 2.876079 GCTGGGAAACTACCTCCAGTTG 60.876 54.545 9.55 0.00 46.17 3.16
3338 7081 2.637872 CTGGGAAACTACCTCCAGTTGA 59.362 50.000 0.00 0.00 41.21 3.18
3339 7082 2.370849 TGGGAAACTACCTCCAGTTGAC 59.629 50.000 0.00 0.00 38.74 3.18
3340 7083 2.638363 GGGAAACTACCTCCAGTTGACT 59.362 50.000 0.00 0.00 38.74 3.41
3341 7084 3.306849 GGGAAACTACCTCCAGTTGACTC 60.307 52.174 0.00 0.00 38.74 3.36
3342 7085 3.306849 GGAAACTACCTCCAGTTGACTCC 60.307 52.174 0.00 0.00 38.74 3.85
3343 7086 2.696526 ACTACCTCCAGTTGACTCCA 57.303 50.000 0.00 0.00 0.00 3.86
3344 7087 3.191888 ACTACCTCCAGTTGACTCCAT 57.808 47.619 0.00 0.00 0.00 3.41
3345 7088 2.834549 ACTACCTCCAGTTGACTCCATG 59.165 50.000 0.00 0.00 0.00 3.66
3346 7089 2.030027 ACCTCCAGTTGACTCCATGA 57.970 50.000 0.00 0.00 0.00 3.07
3347 7090 2.338809 ACCTCCAGTTGACTCCATGAA 58.661 47.619 0.00 0.00 0.00 2.57
3348 7091 2.915604 ACCTCCAGTTGACTCCATGAAT 59.084 45.455 0.00 0.00 0.00 2.57
3349 7092 4.104086 ACCTCCAGTTGACTCCATGAATA 58.896 43.478 0.00 0.00 0.00 1.75
3350 7093 4.163078 ACCTCCAGTTGACTCCATGAATAG 59.837 45.833 0.00 0.00 0.00 1.73
3351 7094 4.444022 CCTCCAGTTGACTCCATGAATAGG 60.444 50.000 0.00 0.00 0.00 2.57
3352 7095 4.361783 TCCAGTTGACTCCATGAATAGGA 58.638 43.478 0.00 0.00 0.00 2.94
3353 7096 4.782691 TCCAGTTGACTCCATGAATAGGAA 59.217 41.667 0.00 0.00 34.08 3.36
3354 7097 5.429762 TCCAGTTGACTCCATGAATAGGAAT 59.570 40.000 0.00 0.00 34.08 3.01
3355 7098 5.762218 CCAGTTGACTCCATGAATAGGAATC 59.238 44.000 0.00 0.00 34.08 2.52
3356 7099 6.409005 CCAGTTGACTCCATGAATAGGAATCT 60.409 42.308 0.00 0.00 32.80 2.40
3357 7100 6.482641 CAGTTGACTCCATGAATAGGAATCTG 59.517 42.308 0.00 0.00 32.80 2.90
3358 7101 5.557576 TGACTCCATGAATAGGAATCTGG 57.442 43.478 0.00 0.00 32.80 3.86
3359 7102 5.218959 TGACTCCATGAATAGGAATCTGGA 58.781 41.667 0.00 0.00 32.80 3.86
3361 7104 5.163281 CTCCATGAATAGGAATCTGGAGG 57.837 47.826 8.24 0.00 43.85 4.30
3362 7105 4.831314 TCCATGAATAGGAATCTGGAGGA 58.169 43.478 0.00 0.00 30.71 3.71
3363 7106 5.226803 TCCATGAATAGGAATCTGGAGGAA 58.773 41.667 0.00 0.00 30.71 3.36
3364 7107 5.309020 TCCATGAATAGGAATCTGGAGGAAG 59.691 44.000 0.00 0.00 30.71 3.46
3365 7108 5.514484 CCATGAATAGGAATCTGGAGGAAGG 60.514 48.000 0.00 0.00 0.00 3.46
3366 7109 4.895836 TGAATAGGAATCTGGAGGAAGGA 58.104 43.478 0.00 0.00 0.00 3.36
3367 7110 4.656112 TGAATAGGAATCTGGAGGAAGGAC 59.344 45.833 0.00 0.00 0.00 3.85
3368 7111 2.649742 AGGAATCTGGAGGAAGGACA 57.350 50.000 0.00 0.00 0.00 4.02
3369 7112 2.192263 AGGAATCTGGAGGAAGGACAC 58.808 52.381 0.00 0.00 0.00 3.67
3370 7113 1.134670 GGAATCTGGAGGAAGGACACG 60.135 57.143 0.00 0.00 0.00 4.49
3371 7114 1.550976 GAATCTGGAGGAAGGACACGT 59.449 52.381 0.00 0.00 0.00 4.49
3372 7115 1.187087 ATCTGGAGGAAGGACACGTC 58.813 55.000 0.00 0.00 0.00 4.34
3382 7125 3.463505 GACACGTCCATGCTGTCG 58.536 61.111 0.00 0.00 0.00 4.35
3383 7126 2.730672 GACACGTCCATGCTGTCGC 61.731 63.158 0.00 0.00 0.00 5.19
3393 7136 2.571548 TGCTGTCGCAGATCTCAGA 58.428 52.632 12.16 3.34 42.25 3.27
3394 7137 0.455005 TGCTGTCGCAGATCTCAGAG 59.545 55.000 12.16 0.00 42.25 3.35
3395 7138 0.248990 GCTGTCGCAGATCTCAGAGG 60.249 60.000 12.16 3.87 40.67 3.69
3396 7139 1.387539 CTGTCGCAGATCTCAGAGGA 58.612 55.000 3.59 0.00 40.67 3.71
3397 7140 1.955778 CTGTCGCAGATCTCAGAGGAT 59.044 52.381 3.59 0.00 40.67 3.24
3398 7141 2.361757 CTGTCGCAGATCTCAGAGGATT 59.638 50.000 3.59 0.00 40.67 3.01
3399 7142 2.360483 TGTCGCAGATCTCAGAGGATTC 59.640 50.000 0.00 0.00 40.67 2.52
3400 7143 2.622942 GTCGCAGATCTCAGAGGATTCT 59.377 50.000 0.00 0.00 40.67 2.40
3401 7144 2.884012 TCGCAGATCTCAGAGGATTCTC 59.116 50.000 0.00 0.00 40.25 2.87
3402 7145 2.622470 CGCAGATCTCAGAGGATTCTCA 59.378 50.000 3.21 0.00 42.34 3.27
3403 7146 3.256383 CGCAGATCTCAGAGGATTCTCAT 59.744 47.826 3.21 0.00 42.34 2.90
3404 7147 4.616604 CGCAGATCTCAGAGGATTCTCATC 60.617 50.000 3.21 0.00 42.34 2.92
3418 7161 4.412796 TTCTCATCCAATGTAGCAGAGG 57.587 45.455 0.00 0.00 0.00 3.69
3419 7162 3.378512 TCTCATCCAATGTAGCAGAGGT 58.621 45.455 0.00 0.00 0.00 3.85
3420 7163 3.133542 TCTCATCCAATGTAGCAGAGGTG 59.866 47.826 0.00 0.00 0.00 4.00
3421 7164 2.171237 TCATCCAATGTAGCAGAGGTGG 59.829 50.000 0.00 0.00 0.00 4.61
3422 7165 1.656587 TCCAATGTAGCAGAGGTGGT 58.343 50.000 0.00 0.00 38.25 4.16
3423 7166 1.278985 TCCAATGTAGCAGAGGTGGTG 59.721 52.381 0.00 0.00 35.51 4.17
3424 7167 1.003580 CCAATGTAGCAGAGGTGGTGT 59.996 52.381 0.00 0.00 35.51 4.16
3425 7168 2.350522 CAATGTAGCAGAGGTGGTGTC 58.649 52.381 0.00 0.00 35.51 3.67
3426 7169 1.944177 ATGTAGCAGAGGTGGTGTCT 58.056 50.000 0.00 0.00 35.51 3.41
3427 7170 1.257743 TGTAGCAGAGGTGGTGTCTC 58.742 55.000 0.00 0.00 35.51 3.36
3428 7171 1.257743 GTAGCAGAGGTGGTGTCTCA 58.742 55.000 0.00 0.00 35.51 3.27
3429 7172 1.203523 GTAGCAGAGGTGGTGTCTCAG 59.796 57.143 0.00 0.00 35.51 3.35
3430 7173 0.178950 AGCAGAGGTGGTGTCTCAGA 60.179 55.000 0.00 0.00 33.92 3.27
3431 7174 0.901124 GCAGAGGTGGTGTCTCAGAT 59.099 55.000 0.00 0.00 33.92 2.90
3432 7175 1.277557 GCAGAGGTGGTGTCTCAGATT 59.722 52.381 0.00 0.00 33.92 2.40
3433 7176 2.676463 GCAGAGGTGGTGTCTCAGATTC 60.676 54.545 0.00 0.00 33.92 2.52
3434 7177 2.830923 CAGAGGTGGTGTCTCAGATTCT 59.169 50.000 0.00 0.00 33.92 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.513158 CACTCCGTCCCTGCTACAG 59.487 63.158 0.00 0.00 0.00 2.74
34 35 3.075005 GGCACTCCGTCCCTGCTA 61.075 66.667 0.00 0.00 0.00 3.49
39 40 2.431057 CCTATATATGGCACTCCGTCCC 59.569 54.545 0.00 0.00 32.75 4.46
62 63 3.055675 CACATCGTCCTACCCTTAAACCA 60.056 47.826 0.00 0.00 0.00 3.67
78 79 1.221840 CCTCCAACCCCTCACATCG 59.778 63.158 0.00 0.00 0.00 3.84
91 92 1.207488 CCCACCATGGTCTTCCTCCA 61.207 60.000 16.53 0.00 35.17 3.86
99 100 1.256812 CTTCAAACCCCACCATGGTC 58.743 55.000 16.53 0.00 35.17 4.02
102 103 2.008242 TTCCTTCAAACCCCACCATG 57.992 50.000 0.00 0.00 0.00 3.66
104 105 2.552093 TTTTCCTTCAAACCCCACCA 57.448 45.000 0.00 0.00 0.00 4.17
144 146 6.127730 ACATCGGTTGTCTGAAAGTTTTCTTT 60.128 34.615 6.21 0.00 42.95 2.52
145 147 5.357032 ACATCGGTTGTCTGAAAGTTTTCTT 59.643 36.000 6.21 0.00 36.21 2.52
146 148 4.881850 ACATCGGTTGTCTGAAAGTTTTCT 59.118 37.500 6.21 0.00 34.13 2.52
147 149 4.970003 CACATCGGTTGTCTGAAAGTTTTC 59.030 41.667 0.00 0.00 36.00 2.29
148 150 4.202010 CCACATCGGTTGTCTGAAAGTTTT 60.202 41.667 0.00 0.00 36.00 2.43
155 157 1.003839 GCCCACATCGGTTGTCTGA 60.004 57.895 0.00 0.00 36.00 3.27
158 160 0.887933 AATTGCCCACATCGGTTGTC 59.112 50.000 0.00 0.00 36.00 3.18
164 166 1.672441 CCAACCAAATTGCCCACATCG 60.672 52.381 0.00 0.00 36.93 3.84
167 169 1.347050 CATCCAACCAAATTGCCCACA 59.653 47.619 0.00 0.00 36.93 4.17
169 171 0.982704 CCATCCAACCAAATTGCCCA 59.017 50.000 0.00 0.00 36.93 5.36
186 188 3.132824 CCATATCTACAGTGTGTGAGCCA 59.867 47.826 5.88 0.00 0.00 4.75
218 238 2.398588 ACTGGCGGATCTCCTTTCATA 58.601 47.619 0.00 0.00 0.00 2.15
228 248 4.039366 ACCTAAGATCTAAACTGGCGGATC 59.961 45.833 0.00 0.00 35.98 3.36
230 250 3.371965 ACCTAAGATCTAAACTGGCGGA 58.628 45.455 0.00 0.00 0.00 5.54
233 253 6.049790 CACCTAACCTAAGATCTAAACTGGC 58.950 44.000 0.00 0.00 0.00 4.85
234 254 7.184067 ACACCTAACCTAAGATCTAAACTGG 57.816 40.000 0.00 0.00 0.00 4.00
235 255 9.503399 AAAACACCTAACCTAAGATCTAAACTG 57.497 33.333 0.00 0.00 0.00 3.16
236 256 9.722184 GAAAACACCTAACCTAAGATCTAAACT 57.278 33.333 0.00 0.00 0.00 2.66
243 263 6.734281 AGTAGGGAAAACACCTAACCTAAGAT 59.266 38.462 0.00 0.00 41.96 2.40
244 264 6.013984 CAGTAGGGAAAACACCTAACCTAAGA 60.014 42.308 0.00 0.00 41.96 2.10
245 265 6.013984 TCAGTAGGGAAAACACCTAACCTAAG 60.014 42.308 0.00 0.00 41.96 2.18
246 266 5.845614 TCAGTAGGGAAAACACCTAACCTAA 59.154 40.000 0.00 0.00 41.96 2.69
247 267 5.405279 TCAGTAGGGAAAACACCTAACCTA 58.595 41.667 0.00 0.00 41.96 3.08
248 268 4.237018 TCAGTAGGGAAAACACCTAACCT 58.763 43.478 0.00 0.00 41.96 3.50
249 269 4.041321 ACTCAGTAGGGAAAACACCTAACC 59.959 45.833 0.00 0.00 41.96 2.85
250 270 5.224821 ACTCAGTAGGGAAAACACCTAAC 57.775 43.478 0.00 0.00 41.96 2.34
251 271 6.600882 CTACTCAGTAGGGAAAACACCTAA 57.399 41.667 3.60 0.00 41.96 2.69
264 284 1.477195 CGGAGGGGTCCTACTCAGTAG 60.477 61.905 4.66 4.66 30.74 2.57
265 285 0.549950 CGGAGGGGTCCTACTCAGTA 59.450 60.000 13.69 0.00 30.74 2.74
266 286 1.306970 CGGAGGGGTCCTACTCAGT 59.693 63.158 13.69 0.00 30.74 3.41
267 287 4.261701 CGGAGGGGTCCTACTCAG 57.738 66.667 13.69 7.77 30.74 3.35
280 300 5.340439 AACACCTAAGATCTAAACCGGAG 57.660 43.478 9.46 0.00 0.00 4.63
281 301 5.482878 AGAAACACCTAAGATCTAAACCGGA 59.517 40.000 9.46 0.00 0.00 5.14
282 302 5.731591 AGAAACACCTAAGATCTAAACCGG 58.268 41.667 0.00 0.00 0.00 5.28
283 303 7.148457 GGAAAGAAACACCTAAGATCTAAACCG 60.148 40.741 0.00 0.00 0.00 4.44
284 304 7.883833 AGGAAAGAAACACCTAAGATCTAAACC 59.116 37.037 0.00 0.00 31.78 3.27
285 305 8.722394 CAGGAAAGAAACACCTAAGATCTAAAC 58.278 37.037 0.00 0.00 32.35 2.01
286 306 7.883311 CCAGGAAAGAAACACCTAAGATCTAAA 59.117 37.037 0.00 0.00 32.35 1.85
287 307 7.236847 TCCAGGAAAGAAACACCTAAGATCTAA 59.763 37.037 0.00 0.00 32.35 2.10
288 308 6.729100 TCCAGGAAAGAAACACCTAAGATCTA 59.271 38.462 0.00 0.00 32.35 1.98
289 309 5.548056 TCCAGGAAAGAAACACCTAAGATCT 59.452 40.000 0.00 0.00 32.35 2.75
290 310 5.805728 TCCAGGAAAGAAACACCTAAGATC 58.194 41.667 0.00 0.00 32.35 2.75
291 311 5.843019 TCCAGGAAAGAAACACCTAAGAT 57.157 39.130 0.00 0.00 32.35 2.40
292 312 5.640158 TTCCAGGAAAGAAACACCTAAGA 57.360 39.130 0.00 0.00 32.35 2.10
293 313 6.717084 AGATTTCCAGGAAAGAAACACCTAAG 59.283 38.462 19.62 0.00 36.13 2.18
294 314 6.610830 AGATTTCCAGGAAAGAAACACCTAA 58.389 36.000 19.62 0.00 36.13 2.69
295 315 6.200878 AGATTTCCAGGAAAGAAACACCTA 57.799 37.500 19.62 0.00 36.13 3.08
296 316 5.066913 AGATTTCCAGGAAAGAAACACCT 57.933 39.130 19.62 0.47 36.13 4.00
297 317 5.791336 AAGATTTCCAGGAAAGAAACACC 57.209 39.130 19.62 3.75 36.13 4.16
298 318 6.490381 ACCTAAGATTTCCAGGAAAGAAACAC 59.510 38.462 19.62 7.18 36.13 3.32
299 319 6.610830 ACCTAAGATTTCCAGGAAAGAAACA 58.389 36.000 19.62 3.81 36.13 2.83
300 320 7.371159 CAACCTAAGATTTCCAGGAAAGAAAC 58.629 38.462 19.62 10.83 36.13 2.78
301 321 6.493458 CCAACCTAAGATTTCCAGGAAAGAAA 59.507 38.462 19.62 5.09 34.92 2.52
302 322 6.010219 CCAACCTAAGATTTCCAGGAAAGAA 58.990 40.000 19.62 0.00 34.92 2.52
303 323 5.516591 CCCAACCTAAGATTTCCAGGAAAGA 60.517 44.000 19.62 0.00 34.92 2.52
304 324 4.706962 CCCAACCTAAGATTTCCAGGAAAG 59.293 45.833 19.62 7.77 34.92 2.62
305 325 4.107311 ACCCAACCTAAGATTTCCAGGAAA 59.893 41.667 17.33 17.33 35.94 3.13
306 326 3.660669 ACCCAACCTAAGATTTCCAGGAA 59.339 43.478 0.00 0.00 33.44 3.36
307 327 3.010138 CACCCAACCTAAGATTTCCAGGA 59.990 47.826 3.50 0.00 33.44 3.86
308 328 3.245264 ACACCCAACCTAAGATTTCCAGG 60.245 47.826 0.00 0.00 35.45 4.45
309 329 4.034285 ACACCCAACCTAAGATTTCCAG 57.966 45.455 0.00 0.00 0.00 3.86
310 330 4.463050 AACACCCAACCTAAGATTTCCA 57.537 40.909 0.00 0.00 0.00 3.53
311 331 5.801531 AAAACACCCAACCTAAGATTTCC 57.198 39.130 0.00 0.00 0.00 3.13
312 332 6.041637 AGGAAAAACACCCAACCTAAGATTTC 59.958 38.462 0.00 0.00 0.00 2.17
313 333 5.903010 AGGAAAAACACCCAACCTAAGATTT 59.097 36.000 0.00 0.00 0.00 2.17
314 334 5.464069 AGGAAAAACACCCAACCTAAGATT 58.536 37.500 0.00 0.00 0.00 2.40
353 374 9.457436 GGAAAAACACCTAATATCTAAACCAGA 57.543 33.333 0.00 0.00 37.79 3.86
355 376 9.238368 CTGGAAAAACACCTAATATCTAAACCA 57.762 33.333 0.00 0.00 0.00 3.67
365 386 7.855784 AAGATTTCCTGGAAAAACACCTAAT 57.144 32.000 24.44 5.93 35.11 1.73
368 389 5.775195 CCTAAGATTTCCTGGAAAAACACCT 59.225 40.000 24.44 13.60 35.11 4.00
378 399 2.379005 GCCCAACCTAAGATTTCCTGG 58.621 52.381 0.00 0.00 0.00 4.45
381 405 2.124277 ACGCCCAACCTAAGATTTCC 57.876 50.000 0.00 0.00 0.00 3.13
384 408 7.057894 TCATAAAATACGCCCAACCTAAGATT 58.942 34.615 0.00 0.00 0.00 2.40
455 485 6.820656 ACACAGAGGAGTATCAAATCATTCAC 59.179 38.462 0.00 0.00 36.25 3.18
494 524 0.384309 TCGAGGCCGCTATACAAGTG 59.616 55.000 4.53 0.00 35.37 3.16
495 525 0.384669 GTCGAGGCCGCTATACAAGT 59.615 55.000 4.53 0.00 35.37 3.16
509 540 4.642885 AGAGAAGATAGGTTCCAAGTCGAG 59.357 45.833 0.00 0.00 0.00 4.04
556 587 6.708949 TCAGGTAGTAAAATTCGCAAAGTCTT 59.291 34.615 0.00 0.00 0.00 3.01
560 591 5.119588 TCGTCAGGTAGTAAAATTCGCAAAG 59.880 40.000 0.00 0.00 0.00 2.77
601 639 9.838339 CTGTTTTAGTTATGAAGGTGATATCCT 57.162 33.333 0.00 0.00 39.84 3.24
602 640 9.832445 TCTGTTTTAGTTATGAAGGTGATATCC 57.168 33.333 0.00 0.00 0.00 2.59
654 696 7.229907 TCTCATACCTACGCATCTGTAATACAA 59.770 37.037 0.00 0.00 0.00 2.41
655 697 6.713450 TCTCATACCTACGCATCTGTAATACA 59.287 38.462 0.00 0.00 0.00 2.29
656 698 7.142306 TCTCATACCTACGCATCTGTAATAC 57.858 40.000 0.00 0.00 0.00 1.89
664 706 3.305471 GGTTCCTCTCATACCTACGCATC 60.305 52.174 0.00 0.00 0.00 3.91
688 730 6.096423 GGAGGAATTTTAGGAGCCGTATTTTT 59.904 38.462 0.00 0.00 0.00 1.94
731 773 1.394917 CGTAACCTCAAGTGCTCATGC 59.605 52.381 0.00 0.00 40.20 4.06
747 789 1.626321 TGGGGAGAAGTTCATGCGTAA 59.374 47.619 5.50 0.00 0.00 3.18
748 790 1.271856 TGGGGAGAAGTTCATGCGTA 58.728 50.000 5.50 0.00 0.00 4.42
773 815 6.205101 TCTATTGTTAGAGAGGAAACCGAC 57.795 41.667 0.00 0.00 30.79 4.79
797 839 4.439016 GCAACAGTTAAAACCGTCTTGGAA 60.439 41.667 0.00 0.00 42.00 3.53
798 840 3.065648 GCAACAGTTAAAACCGTCTTGGA 59.934 43.478 0.00 0.00 42.00 3.53
894 936 0.264359 CCCCATATGAAGGCCCCAAA 59.736 55.000 3.65 0.00 0.00 3.28
951 993 6.656003 ACGCGATGGATTTTTAGTTATAAGC 58.344 36.000 15.93 0.00 0.00 3.09
958 1000 1.326548 GCGACGCGATGGATTTTTAGT 59.673 47.619 15.93 0.00 0.00 2.24
986 1028 6.783708 ACGACTTCATTTCTTAGAGGAGAT 57.216 37.500 0.00 0.00 0.00 2.75
987 1029 7.883391 ATACGACTTCATTTCTTAGAGGAGA 57.117 36.000 0.00 0.00 0.00 3.71
1049 1100 8.616076 CATGTCCAAAGAAGATATTGTTACTCC 58.384 37.037 0.00 0.00 0.00 3.85
1093 1144 1.200020 CTCGATTTTGTGTTCCAGCCC 59.800 52.381 0.00 0.00 0.00 5.19
1148 1199 6.936335 TGTCTAATCAAAAGAACTGATGCTGA 59.064 34.615 0.00 0.00 33.76 4.26
1152 1203 8.048534 ACCATGTCTAATCAAAAGAACTGATG 57.951 34.615 0.00 0.00 33.76 3.07
1181 1232 5.956642 ACGTGTATTTTGGAGTTGTTTGTT 58.043 33.333 0.00 0.00 0.00 2.83
1214 1297 9.670442 ATTGGGAACTAAGTAATGACTAGGATA 57.330 33.333 0.00 0.00 33.58 2.59
1216 1299 7.844779 AGATTGGGAACTAAGTAATGACTAGGA 59.155 37.037 0.00 0.00 33.58 2.94
1217 1300 8.024145 AGATTGGGAACTAAGTAATGACTAGG 57.976 38.462 0.00 0.00 33.58 3.02
1218 1301 9.535878 GAAGATTGGGAACTAAGTAATGACTAG 57.464 37.037 0.00 0.00 33.58 2.57
1219 1302 8.483758 GGAAGATTGGGAACTAAGTAATGACTA 58.516 37.037 0.00 0.00 33.58 2.59
1221 1304 7.339482 AGGAAGATTGGGAACTAAGTAATGAC 58.661 38.462 0.00 0.00 0.00 3.06
1222 1305 7.510675 AGGAAGATTGGGAACTAAGTAATGA 57.489 36.000 0.00 0.00 0.00 2.57
1279 1522 7.197901 TCCAACCCTAGTTCCGAAAATTATA 57.802 36.000 0.00 0.00 32.45 0.98
1292 1535 5.968167 TCCAATAAGTACATCCAACCCTAGT 59.032 40.000 0.00 0.00 0.00 2.57
1295 1538 4.383770 CGTCCAATAAGTACATCCAACCCT 60.384 45.833 0.00 0.00 0.00 4.34
1296 1539 3.875134 CGTCCAATAAGTACATCCAACCC 59.125 47.826 0.00 0.00 0.00 4.11
1297 1540 3.311596 GCGTCCAATAAGTACATCCAACC 59.688 47.826 0.00 0.00 0.00 3.77
1351 1594 2.433664 GACGTGGCGGTGTTAGGG 60.434 66.667 0.00 0.00 0.00 3.53
1370 1613 1.459592 GATCGACAAAGGACAACCGTG 59.540 52.381 0.00 0.00 41.83 4.94
1643 1886 2.037136 CGGACTTGGGCTTCTGCTG 61.037 63.158 0.00 0.00 39.59 4.41
1784 2036 4.379243 CTTGCTGGCGACCGACCT 62.379 66.667 0.00 0.00 0.00 3.85
1832 2084 1.134367 GTCGGTGATCTGATCGTCCAA 59.866 52.381 22.28 9.28 0.00 3.53
1975 2227 1.878522 CGAGTTATTGCGCGCCTCT 60.879 57.895 30.77 18.38 0.00 3.69
1983 2235 1.327764 CCTTCTTCGGCGAGTTATTGC 59.672 52.381 10.46 0.00 34.78 3.56
2016 2268 1.411501 CCTCCTCCTCCTCCTTCTCTG 60.412 61.905 0.00 0.00 0.00 3.35
2017 2269 0.933700 CCTCCTCCTCCTCCTTCTCT 59.066 60.000 0.00 0.00 0.00 3.10
2027 2282 2.123033 GGGCTCCTCCTCCTCCTC 60.123 72.222 0.00 0.00 34.39 3.71
2035 2290 1.631071 CCTCCTTCTTGGGCTCCTCC 61.631 65.000 0.00 0.00 36.20 4.30
2037 2292 0.620121 CTCCTCCTTCTTGGGCTCCT 60.620 60.000 0.00 0.00 36.20 3.69
2038 2293 1.631071 CCTCCTCCTTCTTGGGCTCC 61.631 65.000 0.00 0.00 36.20 4.70
2040 2295 0.620121 CTCCTCCTCCTTCTTGGGCT 60.620 60.000 0.00 0.00 36.20 5.19
2041 2296 1.631071 CCTCCTCCTCCTTCTTGGGC 61.631 65.000 0.00 0.00 36.20 5.36
2042 2297 0.252927 ACCTCCTCCTCCTTCTTGGG 60.253 60.000 0.00 0.00 36.20 4.12
2045 2300 0.912006 GGCACCTCCTCCTCCTTCTT 60.912 60.000 0.00 0.00 0.00 2.52
2062 2326 2.041265 TCCTCCTCCTCCTTGGGC 59.959 66.667 0.00 0.00 36.20 5.36
2063 2327 1.383803 CCTCCTCCTCCTCCTTGGG 60.384 68.421 0.00 0.00 36.20 4.12
2065 2329 0.398381 CCTCCTCCTCCTCCTCCTTG 60.398 65.000 0.00 0.00 0.00 3.61
2066 2330 0.858139 ACCTCCTCCTCCTCCTCCTT 60.858 60.000 0.00 0.00 0.00 3.36
2069 2333 1.760480 GCACCTCCTCCTCCTCCTC 60.760 68.421 0.00 0.00 0.00 3.71
2085 2355 1.136329 AGGAGCTTCCTTCTTGGGCA 61.136 55.000 0.00 0.00 46.91 5.36
2098 2398 3.387609 ATCCGGAGCAGGAGGAGCT 62.388 63.158 11.34 0.00 44.55 4.09
2125 2425 0.871722 CGATTTTGTCCACTTCGGCA 59.128 50.000 0.00 0.00 33.14 5.69
2140 2440 2.359850 TTCTTGGCAGCCGCGATT 60.360 55.556 8.23 0.00 39.92 3.34
2149 2449 3.359523 CGCTGCTGCTTCTTGGCA 61.360 61.111 14.03 0.00 40.15 4.92
2160 2460 0.179089 GATGTCATCCTCACGCTGCT 60.179 55.000 0.90 0.00 0.00 4.24
2167 2467 0.178767 CCGCCTTGATGTCATCCTCA 59.821 55.000 10.36 0.00 0.00 3.86
2195 2495 3.650950 GCAGCCCTGGAACCTCCA 61.651 66.667 0.00 0.00 45.98 3.86
2419 2719 1.833787 TAGTTCAGGCGTGGGGGTTC 61.834 60.000 6.56 0.00 0.00 3.62
2424 2724 1.338674 TGAATGTAGTTCAGGCGTGGG 60.339 52.381 6.56 0.00 41.79 4.61
2452 2758 3.965701 GCACGCGATCGAGCTTCG 61.966 66.667 21.57 14.83 46.29 3.79
2472 2778 7.504926 TTAAAGAGTAGCAGGGATAAAGGAA 57.495 36.000 0.00 0.00 0.00 3.36
2484 2793 5.692115 TGATGGGTGATTAAAGAGTAGCA 57.308 39.130 0.00 0.00 0.00 3.49
2527 2836 6.749118 GCGGTACCGTAATTATAGATAAGTGG 59.251 42.308 33.34 0.96 42.09 4.00
2549 2858 3.882888 TCCTCCTTGCAAAATATAAGCGG 59.117 43.478 0.00 0.00 0.00 5.52
2615 2927 8.568617 AAAGTATAATACACCATCTTCCTCCT 57.431 34.615 0.00 0.00 0.00 3.69
2641 2954 7.933577 ACCATTGATCGTGTTGATGATAGTATT 59.066 33.333 0.00 0.00 37.47 1.89
2653 2966 4.021102 AGGAGAAACCATTGATCGTGTT 57.979 40.909 0.00 0.00 42.04 3.32
2665 2978 2.930682 CGCAAAGCTAGTAGGAGAAACC 59.069 50.000 0.00 0.00 39.35 3.27
2802 3119 3.369147 CAGTCGGAACTGTGCTTCATTAG 59.631 47.826 0.00 0.00 46.52 1.73
2803 3120 3.325870 CAGTCGGAACTGTGCTTCATTA 58.674 45.455 0.00 0.00 46.52 1.90
2804 3121 2.146342 CAGTCGGAACTGTGCTTCATT 58.854 47.619 0.00 0.00 46.52 2.57
2806 3123 3.289128 CAGTCGGAACTGTGCTTCA 57.711 52.632 0.00 0.00 46.52 3.02
2815 3132 6.780706 TCAGAAAATTAGAACAGTCGGAAC 57.219 37.500 0.00 0.00 0.00 3.62
2824 3141 9.727627 CAATCTATGCCTTCAGAAAATTAGAAC 57.272 33.333 0.00 0.00 0.00 3.01
2878 3195 7.929785 CGGGGAGCTTAGTGATTTTAAGTATTA 59.070 37.037 0.00 0.00 32.09 0.98
2879 3196 6.766467 CGGGGAGCTTAGTGATTTTAAGTATT 59.234 38.462 0.00 0.00 32.09 1.89
2880 3197 6.289064 CGGGGAGCTTAGTGATTTTAAGTAT 58.711 40.000 0.00 0.00 32.09 2.12
2881 3198 5.395990 CCGGGGAGCTTAGTGATTTTAAGTA 60.396 44.000 0.00 0.00 32.09 2.24
2882 3199 4.514401 CGGGGAGCTTAGTGATTTTAAGT 58.486 43.478 0.00 0.00 32.09 2.24
2883 3200 3.877508 CCGGGGAGCTTAGTGATTTTAAG 59.122 47.826 0.00 0.00 0.00 1.85
2884 3201 3.371166 CCCGGGGAGCTTAGTGATTTTAA 60.371 47.826 14.71 0.00 0.00 1.52
2885 3202 2.171870 CCCGGGGAGCTTAGTGATTTTA 59.828 50.000 14.71 0.00 0.00 1.52
2886 3203 1.064685 CCCGGGGAGCTTAGTGATTTT 60.065 52.381 14.71 0.00 0.00 1.82
2887 3204 0.546598 CCCGGGGAGCTTAGTGATTT 59.453 55.000 14.71 0.00 0.00 2.17
2888 3205 1.984288 GCCCGGGGAGCTTAGTGATT 61.984 60.000 25.28 0.00 0.00 2.57
2889 3206 2.444256 GCCCGGGGAGCTTAGTGAT 61.444 63.158 25.28 0.00 0.00 3.06
2890 3207 3.081409 GCCCGGGGAGCTTAGTGA 61.081 66.667 25.28 0.00 0.00 3.41
2891 3208 3.083997 AGCCCGGGGAGCTTAGTG 61.084 66.667 25.28 0.00 37.24 2.74
2896 3213 1.692749 TATTCAAGCCCGGGGAGCT 60.693 57.895 25.28 10.75 44.19 4.09
2897 3214 1.227973 CTATTCAAGCCCGGGGAGC 60.228 63.158 25.28 8.05 0.00 4.70
2915 3240 3.113386 GAAGGCCGCCTGAAATCGC 62.113 63.158 14.19 0.00 32.13 4.58
2976 3334 6.699366 TGTATCCCACAAACTGTCGTATTTA 58.301 36.000 0.00 0.00 32.95 1.40
2983 3341 6.177610 TCCTTTATGTATCCCACAAACTGTC 58.822 40.000 0.00 0.00 41.55 3.51
3004 3362 1.765314 CTTCCTCAACCCGATGATCCT 59.235 52.381 0.00 0.00 0.00 3.24
3020 3378 2.690778 GGCGTCACATGTGGCTTCC 61.691 63.158 26.71 22.22 31.96 3.46
3021 3379 2.690778 GGGCGTCACATGTGGCTTC 61.691 63.158 26.71 17.80 31.96 3.86
3032 3390 2.871096 AATCAAGTTTAGGGGCGTCA 57.129 45.000 0.00 0.00 0.00 4.35
3033 3391 3.626217 CCTTAATCAAGTTTAGGGGCGTC 59.374 47.826 0.00 0.00 33.84 5.19
3042 3400 7.564793 AGCAAAGTTTTCCCTTAATCAAGTTT 58.435 30.769 0.00 0.00 0.00 2.66
3047 3405 6.493458 AGCTTAGCAAAGTTTTCCCTTAATCA 59.507 34.615 7.07 0.00 34.99 2.57
3048 3406 6.925211 AGCTTAGCAAAGTTTTCCCTTAATC 58.075 36.000 7.07 0.00 34.99 1.75
3052 3410 6.010219 TCATAGCTTAGCAAAGTTTTCCCTT 58.990 36.000 7.07 0.00 34.99 3.95
3092 3450 2.479560 CGATGCTACATGAAGGTCGTCA 60.480 50.000 0.00 0.00 0.00 4.35
3114 3472 0.389556 GGGGAAGACCGAGTCGAAAC 60.390 60.000 15.64 4.82 41.60 2.78
3118 3476 0.179108 GAATGGGGAAGACCGAGTCG 60.179 60.000 5.29 5.29 41.60 4.18
3121 6850 1.134371 GGAAGAATGGGGAAGACCGAG 60.134 57.143 0.00 0.00 41.60 4.63
3142 6884 6.458210 AGATCAACAAGCCCAATTAACAAAG 58.542 36.000 0.00 0.00 0.00 2.77
3144 6886 6.183360 ACAAGATCAACAAGCCCAATTAACAA 60.183 34.615 0.00 0.00 0.00 2.83
3167 6909 5.786264 TTAAAAAGGCCCATAAAACGACA 57.214 34.783 0.00 0.00 0.00 4.35
3205 6948 1.003646 TTACAAATAGCCCAGGCCCA 58.996 50.000 4.70 0.00 43.17 5.36
3220 6963 0.899720 GTCATCCCGTCCCACTTACA 59.100 55.000 0.00 0.00 0.00 2.41
3223 6966 0.544357 TGAGTCATCCCGTCCCACTT 60.544 55.000 0.00 0.00 0.00 3.16
3231 6974 2.710377 TCAACCAAATGAGTCATCCCG 58.290 47.619 5.98 0.00 0.00 5.14
3249 6992 5.128499 TCTTTTTGAGGCAAGGAAAACATCA 59.872 36.000 0.00 0.00 0.00 3.07
3275 7018 5.104151 ACCAGGGAAAACATTGACCATTTTT 60.104 36.000 0.00 0.00 0.00 1.94
3276 7019 4.411869 ACCAGGGAAAACATTGACCATTTT 59.588 37.500 0.00 0.00 0.00 1.82
3277 7020 3.973305 ACCAGGGAAAACATTGACCATTT 59.027 39.130 0.00 0.00 0.00 2.32
3278 7021 3.578282 GACCAGGGAAAACATTGACCATT 59.422 43.478 0.00 0.00 0.00 3.16
3279 7022 3.165071 GACCAGGGAAAACATTGACCAT 58.835 45.455 0.00 0.00 0.00 3.55
3280 7023 2.091610 TGACCAGGGAAAACATTGACCA 60.092 45.455 0.00 0.00 0.00 4.02
3281 7024 2.593026 TGACCAGGGAAAACATTGACC 58.407 47.619 0.00 0.00 0.00 4.02
3282 7025 4.501400 CCTTTGACCAGGGAAAACATTGAC 60.501 45.833 0.00 0.00 0.00 3.18
3283 7026 3.640967 CCTTTGACCAGGGAAAACATTGA 59.359 43.478 0.00 0.00 0.00 2.57
3284 7027 3.803368 GCCTTTGACCAGGGAAAACATTG 60.803 47.826 0.00 0.00 34.01 2.82
3285 7028 2.368548 GCCTTTGACCAGGGAAAACATT 59.631 45.455 0.00 0.00 34.01 2.71
3286 7029 1.970640 GCCTTTGACCAGGGAAAACAT 59.029 47.619 0.00 0.00 34.01 2.71
3287 7030 1.408969 GCCTTTGACCAGGGAAAACA 58.591 50.000 0.00 0.00 34.01 2.83
3288 7031 0.313987 CGCCTTTGACCAGGGAAAAC 59.686 55.000 0.00 0.00 34.01 2.43
3289 7032 0.825840 CCGCCTTTGACCAGGGAAAA 60.826 55.000 0.00 0.00 34.01 2.29
3290 7033 1.228429 CCGCCTTTGACCAGGGAAA 60.228 57.895 0.00 0.00 34.01 3.13
3291 7034 2.124507 CTCCGCCTTTGACCAGGGAA 62.125 60.000 0.00 0.00 34.01 3.97
3292 7035 2.528127 TCCGCCTTTGACCAGGGA 60.528 61.111 0.00 0.00 34.01 4.20
3293 7036 2.045926 CTCCGCCTTTGACCAGGG 60.046 66.667 0.00 0.00 34.01 4.45
3294 7037 1.672356 CACTCCGCCTTTGACCAGG 60.672 63.158 0.00 0.00 36.95 4.45
3295 7038 1.672356 CCACTCCGCCTTTGACCAG 60.672 63.158 0.00 0.00 0.00 4.00
3296 7039 2.429930 CCACTCCGCCTTTGACCA 59.570 61.111 0.00 0.00 0.00 4.02
3297 7040 3.056328 GCCACTCCGCCTTTGACC 61.056 66.667 0.00 0.00 0.00 4.02
3298 7041 3.423154 CGCCACTCCGCCTTTGAC 61.423 66.667 0.00 0.00 0.00 3.18
3299 7042 4.697756 CCGCCACTCCGCCTTTGA 62.698 66.667 0.00 0.00 0.00 2.69
3307 7050 4.344865 TTTCCCAGCCGCCACTCC 62.345 66.667 0.00 0.00 0.00 3.85
3308 7051 2.180159 TAGTTTCCCAGCCGCCACTC 62.180 60.000 0.00 0.00 0.00 3.51
3309 7052 2.221299 TAGTTTCCCAGCCGCCACT 61.221 57.895 0.00 0.00 0.00 4.00
3310 7053 2.038837 GTAGTTTCCCAGCCGCCAC 61.039 63.158 0.00 0.00 0.00 5.01
3311 7054 2.349755 GTAGTTTCCCAGCCGCCA 59.650 61.111 0.00 0.00 0.00 5.69
3312 7055 2.437895 GGTAGTTTCCCAGCCGCC 60.438 66.667 0.00 0.00 0.00 6.13
3313 7056 1.449778 GAGGTAGTTTCCCAGCCGC 60.450 63.158 0.00 0.00 0.00 6.53
3314 7057 1.221021 GGAGGTAGTTTCCCAGCCG 59.779 63.158 0.00 0.00 0.00 5.52
3315 7058 0.253327 CTGGAGGTAGTTTCCCAGCC 59.747 60.000 0.00 0.00 39.59 4.85
3316 7059 3.863407 CTGGAGGTAGTTTCCCAGC 57.137 57.895 0.00 0.00 39.59 4.85
3318 7061 2.370849 GTCAACTGGAGGTAGTTTCCCA 59.629 50.000 0.00 0.00 38.78 4.37
3319 7062 2.638363 AGTCAACTGGAGGTAGTTTCCC 59.362 50.000 0.00 0.00 38.78 3.97
3320 7063 3.306849 GGAGTCAACTGGAGGTAGTTTCC 60.307 52.174 0.00 0.00 38.78 3.13
3321 7064 3.323979 TGGAGTCAACTGGAGGTAGTTTC 59.676 47.826 0.00 0.00 38.78 2.78
3322 7065 3.314693 TGGAGTCAACTGGAGGTAGTTT 58.685 45.455 0.00 0.00 38.78 2.66
3323 7066 2.972348 TGGAGTCAACTGGAGGTAGTT 58.028 47.619 0.00 0.00 41.37 2.24
3324 7067 2.696526 TGGAGTCAACTGGAGGTAGT 57.303 50.000 0.00 0.00 0.00 2.73
3325 7068 3.099905 TCATGGAGTCAACTGGAGGTAG 58.900 50.000 0.00 0.00 0.00 3.18
3326 7069 3.184382 TCATGGAGTCAACTGGAGGTA 57.816 47.619 0.00 0.00 0.00 3.08
3327 7070 2.030027 TCATGGAGTCAACTGGAGGT 57.970 50.000 0.00 0.00 0.00 3.85
3328 7071 3.641434 ATTCATGGAGTCAACTGGAGG 57.359 47.619 0.00 0.00 0.00 4.30
3329 7072 4.406972 TCCTATTCATGGAGTCAACTGGAG 59.593 45.833 0.00 0.00 0.00 3.86
3330 7073 4.361783 TCCTATTCATGGAGTCAACTGGA 58.638 43.478 0.00 0.00 0.00 3.86
3331 7074 4.760530 TCCTATTCATGGAGTCAACTGG 57.239 45.455 0.00 0.00 0.00 4.00
3332 7075 6.482641 CAGATTCCTATTCATGGAGTCAACTG 59.517 42.308 7.76 0.00 41.13 3.16
3333 7076 6.409005 CCAGATTCCTATTCATGGAGTCAACT 60.409 42.308 7.76 0.00 41.13 3.16
3334 7077 5.762218 CCAGATTCCTATTCATGGAGTCAAC 59.238 44.000 7.76 0.00 41.13 3.18
3335 7078 5.667172 TCCAGATTCCTATTCATGGAGTCAA 59.333 40.000 7.76 0.00 41.13 3.18
3336 7079 5.218959 TCCAGATTCCTATTCATGGAGTCA 58.781 41.667 7.76 0.00 41.13 3.41
3337 7080 5.792741 CTCCAGATTCCTATTCATGGAGTC 58.207 45.833 10.24 0.00 45.67 3.36
3338 7081 5.822132 CTCCAGATTCCTATTCATGGAGT 57.178 43.478 10.24 0.00 45.67 3.85
3340 7083 4.831314 TCCTCCAGATTCCTATTCATGGA 58.169 43.478 0.00 0.00 35.60 3.41
3341 7084 5.514484 CCTTCCTCCAGATTCCTATTCATGG 60.514 48.000 0.00 0.00 0.00 3.66
3342 7085 5.309020 TCCTTCCTCCAGATTCCTATTCATG 59.691 44.000 0.00 0.00 0.00 3.07
3343 7086 5.309282 GTCCTTCCTCCAGATTCCTATTCAT 59.691 44.000 0.00 0.00 0.00 2.57
3344 7087 4.656112 GTCCTTCCTCCAGATTCCTATTCA 59.344 45.833 0.00 0.00 0.00 2.57
3345 7088 4.656112 TGTCCTTCCTCCAGATTCCTATTC 59.344 45.833 0.00 0.00 0.00 1.75
3346 7089 4.410555 GTGTCCTTCCTCCAGATTCCTATT 59.589 45.833 0.00 0.00 0.00 1.73
3347 7090 3.970640 GTGTCCTTCCTCCAGATTCCTAT 59.029 47.826 0.00 0.00 0.00 2.57
3348 7091 3.375699 GTGTCCTTCCTCCAGATTCCTA 58.624 50.000 0.00 0.00 0.00 2.94
3349 7092 2.192263 GTGTCCTTCCTCCAGATTCCT 58.808 52.381 0.00 0.00 0.00 3.36
3350 7093 1.134670 CGTGTCCTTCCTCCAGATTCC 60.135 57.143 0.00 0.00 0.00 3.01
3351 7094 1.550976 ACGTGTCCTTCCTCCAGATTC 59.449 52.381 0.00 0.00 0.00 2.52
3352 7095 1.550976 GACGTGTCCTTCCTCCAGATT 59.449 52.381 0.00 0.00 0.00 2.40
3353 7096 1.187087 GACGTGTCCTTCCTCCAGAT 58.813 55.000 0.00 0.00 0.00 2.90
3354 7097 0.898789 GGACGTGTCCTTCCTCCAGA 60.899 60.000 11.81 0.00 46.16 3.86
3355 7098 1.592223 GGACGTGTCCTTCCTCCAG 59.408 63.158 11.81 0.00 46.16 3.86
3356 7099 3.787394 GGACGTGTCCTTCCTCCA 58.213 61.111 11.81 0.00 46.16 3.86
3365 7108 2.730672 GCGACAGCATGGACGTGTC 61.731 63.158 0.00 0.00 43.62 3.67
3366 7109 2.738521 GCGACAGCATGGACGTGT 60.739 61.111 0.00 0.00 43.62 4.49
3376 7119 0.248990 CCTCTGAGATCTGCGACAGC 60.249 60.000 6.17 0.00 45.41 4.40
3377 7120 1.387539 TCCTCTGAGATCTGCGACAG 58.612 55.000 6.17 0.75 0.00 3.51
3378 7121 2.064434 ATCCTCTGAGATCTGCGACA 57.936 50.000 6.17 0.00 0.00 4.35
3379 7122 2.622942 AGAATCCTCTGAGATCTGCGAC 59.377 50.000 6.17 0.00 0.00 5.19
3380 7123 2.884012 GAGAATCCTCTGAGATCTGCGA 59.116 50.000 6.17 0.00 36.50 5.10
3381 7124 2.622470 TGAGAATCCTCTGAGATCTGCG 59.378 50.000 6.17 0.00 40.10 5.18
3382 7125 4.322198 GGATGAGAATCCTCTGAGATCTGC 60.322 50.000 6.17 0.00 40.10 4.26
3383 7126 4.833938 TGGATGAGAATCCTCTGAGATCTG 59.166 45.833 6.17 0.00 41.29 2.90
3384 7127 5.077369 TGGATGAGAATCCTCTGAGATCT 57.923 43.478 6.17 0.00 41.29 2.75
3385 7128 5.804944 TTGGATGAGAATCCTCTGAGATC 57.195 43.478 6.17 1.86 41.29 2.75
3386 7129 5.607592 ACATTGGATGAGAATCCTCTGAGAT 59.392 40.000 6.17 0.00 41.29 2.75
3387 7130 4.967442 ACATTGGATGAGAATCCTCTGAGA 59.033 41.667 6.17 0.00 41.29 3.27
3388 7131 5.293319 ACATTGGATGAGAATCCTCTGAG 57.707 43.478 6.33 0.00 41.29 3.35
3389 7132 5.221601 GCTACATTGGATGAGAATCCTCTGA 60.222 44.000 6.33 0.00 41.29 3.27
3390 7133 4.996122 GCTACATTGGATGAGAATCCTCTG 59.004 45.833 6.33 6.09 41.29 3.35
3391 7134 4.657504 TGCTACATTGGATGAGAATCCTCT 59.342 41.667 6.33 0.00 41.29 3.69
3392 7135 4.965814 TGCTACATTGGATGAGAATCCTC 58.034 43.478 6.33 0.00 41.29 3.71
3393 7136 4.657504 TCTGCTACATTGGATGAGAATCCT 59.342 41.667 6.33 0.00 41.29 3.24
3394 7137 4.965814 TCTGCTACATTGGATGAGAATCC 58.034 43.478 0.00 0.00 41.10 3.01
3395 7138 4.996122 CCTCTGCTACATTGGATGAGAATC 59.004 45.833 0.00 0.00 0.00 2.52
3396 7139 4.411540 ACCTCTGCTACATTGGATGAGAAT 59.588 41.667 0.00 0.00 0.00 2.40
3397 7140 3.776969 ACCTCTGCTACATTGGATGAGAA 59.223 43.478 0.00 0.00 0.00 2.87
3398 7141 3.133542 CACCTCTGCTACATTGGATGAGA 59.866 47.826 0.00 0.00 0.00 3.27
3399 7142 3.464907 CACCTCTGCTACATTGGATGAG 58.535 50.000 0.00 0.00 0.00 2.90
3400 7143 2.171237 CCACCTCTGCTACATTGGATGA 59.829 50.000 0.00 0.00 0.00 2.92
3401 7144 2.092753 ACCACCTCTGCTACATTGGATG 60.093 50.000 0.00 0.00 0.00 3.51
3402 7145 2.092753 CACCACCTCTGCTACATTGGAT 60.093 50.000 0.00 0.00 0.00 3.41
3403 7146 1.278985 CACCACCTCTGCTACATTGGA 59.721 52.381 0.00 0.00 0.00 3.53
3404 7147 1.003580 ACACCACCTCTGCTACATTGG 59.996 52.381 0.00 0.00 0.00 3.16
3405 7148 2.027745 AGACACCACCTCTGCTACATTG 60.028 50.000 0.00 0.00 0.00 2.82
3406 7149 2.234908 GAGACACCACCTCTGCTACATT 59.765 50.000 0.00 0.00 0.00 2.71
3407 7150 1.827969 GAGACACCACCTCTGCTACAT 59.172 52.381 0.00 0.00 0.00 2.29
3408 7151 1.257743 GAGACACCACCTCTGCTACA 58.742 55.000 0.00 0.00 0.00 2.74
3409 7152 1.203523 CTGAGACACCACCTCTGCTAC 59.796 57.143 0.00 0.00 0.00 3.58
3410 7153 1.075536 TCTGAGACACCACCTCTGCTA 59.924 52.381 0.00 0.00 32.03 3.49
3411 7154 0.178950 TCTGAGACACCACCTCTGCT 60.179 55.000 0.00 0.00 32.03 4.24
3412 7155 0.901124 ATCTGAGACACCACCTCTGC 59.099 55.000 0.00 0.00 32.03 4.26
3413 7156 2.830923 AGAATCTGAGACACCACCTCTG 59.169 50.000 0.00 0.00 0.00 3.35
3414 7157 3.182887 AGAATCTGAGACACCACCTCT 57.817 47.619 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.