Multiple sequence alignment - TraesCS6B01G149400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G149400 chr6B 100.000 2942 0 0 1 2942 150252151 150255092 0.000000e+00 5433
1 TraesCS6B01G149400 chr6B 87.008 254 23 8 1976 2227 150287805 150288050 8.030000e-71 278
2 TraesCS6B01G149400 chr6B 91.304 161 13 1 2778 2938 150482961 150483120 4.940000e-53 219
3 TraesCS6B01G149400 chr6B 89.697 165 15 2 2778 2942 150285180 150285342 2.970000e-50 209
4 TraesCS6B01G149400 chr6B 82.403 233 22 9 2229 2447 150278712 150278939 5.010000e-43 185
5 TraesCS6B01G149400 chr6B 82.051 234 22 10 2229 2447 150288090 150288318 6.480000e-42 182
6 TraesCS6B01G149400 chr6B 85.366 164 22 1 5 168 150228505 150228666 5.040000e-38 169
7 TraesCS6B01G149400 chr6D 90.775 2374 123 24 598 2942 77686410 77688716 0.000000e+00 3083
8 TraesCS6B01G149400 chr6D 86.957 253 24 7 1976 2227 77694722 77694966 2.890000e-70 276
9 TraesCS6B01G149400 chr6D 80.995 221 24 8 2228 2435 77695003 77695218 3.030000e-35 159
10 TraesCS6B01G149400 chr6A 93.881 1569 61 14 598 2149 93425460 93427010 0.000000e+00 2333
11 TraesCS6B01G149400 chr6A 86.875 800 50 17 2054 2831 93427009 93427775 0.000000e+00 845
12 TraesCS6B01G149400 chr6A 86.207 174 16 5 2224 2394 93436990 93437158 6.480000e-42 182
13 TraesCS6B01G149400 chr6A 85.714 154 20 1 14 167 93309588 93309739 8.440000e-36 161
14 TraesCS6B01G149400 chr6A 85.714 154 20 1 14 167 93343725 93343876 8.440000e-36 161
15 TraesCS6B01G149400 chr6A 94.505 91 4 1 2852 2942 93435501 93435590 3.950000e-29 139
16 TraesCS6B01G149400 chrUn 85.714 154 20 1 14 167 367858968 367858817 8.440000e-36 161
17 TraesCS6B01G149400 chr1A 82.069 145 21 4 2778 2920 521262804 521262663 5.150000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G149400 chr6B 150252151 150255092 2941 False 5433 5433 100.000 1 2942 1 chr6B.!!$F2 2941
1 TraesCS6B01G149400 chr6B 150285180 150288318 3138 False 223 278 86.252 1976 2942 3 chr6B.!!$F5 966
2 TraesCS6B01G149400 chr6D 77686410 77688716 2306 False 3083 3083 90.775 598 2942 1 chr6D.!!$F1 2344
3 TraesCS6B01G149400 chr6A 93425460 93427775 2315 False 1589 2333 90.378 598 2831 2 chr6A.!!$F3 2233

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 616 0.170339 CGCCGGAAGTTCCCAAAATC 59.83 55.0 16.47 0.0 31.13 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2555 3355 0.179156 ATTGCAGCGTGCTGTATTGC 60.179 50.0 21.76 9.58 45.31 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.937175 CTACAAAATTCTAAAACTATAGGCAGC 57.063 33.333 4.43 0.00 0.00 5.25
35 36 8.348285 ACAAAATTCTAAAACTATAGGCAGCA 57.652 30.769 4.43 0.00 0.00 4.41
36 37 8.802267 ACAAAATTCTAAAACTATAGGCAGCAA 58.198 29.630 4.43 0.00 0.00 3.91
37 38 9.638239 CAAAATTCTAAAACTATAGGCAGCAAA 57.362 29.630 4.43 0.00 0.00 3.68
38 39 9.639601 AAAATTCTAAAACTATAGGCAGCAAAC 57.360 29.630 4.43 0.00 0.00 2.93
40 41 5.811190 TCTAAAACTATAGGCAGCAAACCA 58.189 37.500 4.43 0.00 0.00 3.67
43 44 5.799827 AAACTATAGGCAGCAAACCAAAA 57.200 34.783 4.43 0.00 0.00 2.44
79 80 2.879103 ACCCTATTATTGCCATCCCG 57.121 50.000 0.00 0.00 0.00 5.14
81 82 2.919602 ACCCTATTATTGCCATCCCGAT 59.080 45.455 0.00 0.00 0.00 4.18
82 83 3.054361 ACCCTATTATTGCCATCCCGATC 60.054 47.826 0.00 0.00 0.00 3.69
84 85 3.118775 CCTATTATTGCCATCCCGATCGA 60.119 47.826 18.66 0.00 0.00 3.59
85 86 2.920724 TTATTGCCATCCCGATCGAA 57.079 45.000 18.66 4.45 0.00 3.71
86 87 2.920724 TATTGCCATCCCGATCGAAA 57.079 45.000 18.66 4.04 0.00 3.46
87 88 2.051334 ATTGCCATCCCGATCGAAAA 57.949 45.000 18.66 1.15 0.00 2.29
88 89 2.051334 TTGCCATCCCGATCGAAAAT 57.949 45.000 18.66 3.78 0.00 1.82
90 91 3.417069 TGCCATCCCGATCGAAAATAT 57.583 42.857 18.66 0.00 0.00 1.28
91 92 4.545208 TGCCATCCCGATCGAAAATATA 57.455 40.909 18.66 0.00 0.00 0.86
95 96 7.279615 TGCCATCCCGATCGAAAATATATATT 58.720 34.615 18.66 1.91 0.00 1.28
97 98 8.621286 GCCATCCCGATCGAAAATATATATTTT 58.379 33.333 26.27 26.27 45.60 1.82
123 124 7.721409 TTGTTAGGGTAAACAAAAAGGACTT 57.279 32.000 0.00 0.00 44.23 3.01
126 127 8.252417 TGTTAGGGTAAACAAAAAGGACTTTTC 58.748 33.333 10.18 0.00 41.45 2.29
127 128 6.860790 AGGGTAAACAAAAAGGACTTTTCA 57.139 33.333 10.18 0.00 41.45 2.69
128 129 6.636705 AGGGTAAACAAAAAGGACTTTTCAC 58.363 36.000 10.18 0.00 41.45 3.18
129 130 5.813672 GGGTAAACAAAAAGGACTTTTCACC 59.186 40.000 10.18 11.40 41.45 4.02
131 132 3.159353 ACAAAAAGGACTTTTCACCGC 57.841 42.857 10.18 0.00 41.45 5.68
132 133 2.758423 ACAAAAAGGACTTTTCACCGCT 59.242 40.909 10.18 0.00 41.45 5.52
133 134 3.115554 CAAAAAGGACTTTTCACCGCTG 58.884 45.455 10.18 1.34 41.45 5.18
134 135 1.318576 AAAGGACTTTTCACCGCTGG 58.681 50.000 0.00 0.00 0.00 4.85
135 136 1.172812 AAGGACTTTTCACCGCTGGC 61.173 55.000 0.00 0.00 0.00 4.85
136 137 2.626780 GGACTTTTCACCGCTGGCC 61.627 63.158 0.00 0.00 0.00 5.36
137 138 2.597510 ACTTTTCACCGCTGGCCC 60.598 61.111 0.00 0.00 0.00 5.80
138 139 2.597217 CTTTTCACCGCTGGCCCA 60.597 61.111 0.00 0.00 0.00 5.36
139 140 2.123683 TTTTCACCGCTGGCCCAA 60.124 55.556 0.00 0.00 0.00 4.12
140 141 1.743321 CTTTTCACCGCTGGCCCAAA 61.743 55.000 0.00 0.00 0.00 3.28
141 142 1.118356 TTTTCACCGCTGGCCCAAAT 61.118 50.000 0.00 0.00 0.00 2.32
142 143 1.814772 TTTCACCGCTGGCCCAAATG 61.815 55.000 0.00 0.00 0.00 2.32
143 144 3.762247 CACCGCTGGCCCAAATGG 61.762 66.667 0.00 0.00 37.09 3.16
145 146 2.679642 CCGCTGGCCCAAATGGAA 60.680 61.111 0.00 0.00 37.39 3.53
146 147 2.282039 CCGCTGGCCCAAATGGAAA 61.282 57.895 0.00 0.00 37.39 3.13
147 148 1.616091 CCGCTGGCCCAAATGGAAAT 61.616 55.000 0.00 0.00 37.39 2.17
148 149 0.249955 CGCTGGCCCAAATGGAAATT 59.750 50.000 0.00 0.00 37.39 1.82
149 150 1.741528 GCTGGCCCAAATGGAAATTG 58.258 50.000 0.00 0.00 37.39 2.32
150 151 1.679640 GCTGGCCCAAATGGAAATTGG 60.680 52.381 0.00 0.00 45.62 3.16
163 164 7.530426 AATGGAAATTGGACCTATCATTAGC 57.470 36.000 0.00 0.00 0.00 3.09
164 165 6.012337 TGGAAATTGGACCTATCATTAGCA 57.988 37.500 0.00 0.00 0.00 3.49
165 166 6.613699 TGGAAATTGGACCTATCATTAGCAT 58.386 36.000 0.00 0.00 0.00 3.79
166 167 7.068702 TGGAAATTGGACCTATCATTAGCATT 58.931 34.615 0.00 0.00 0.00 3.56
167 168 7.231317 TGGAAATTGGACCTATCATTAGCATTC 59.769 37.037 0.00 0.00 0.00 2.67
168 169 7.449704 GGAAATTGGACCTATCATTAGCATTCT 59.550 37.037 0.00 0.00 0.00 2.40
169 170 8.773033 AAATTGGACCTATCATTAGCATTCTT 57.227 30.769 0.00 0.00 0.00 2.52
170 171 7.756395 ATTGGACCTATCATTAGCATTCTTG 57.244 36.000 0.00 0.00 0.00 3.02
172 173 6.899089 TGGACCTATCATTAGCATTCTTGAA 58.101 36.000 0.00 0.00 0.00 2.69
173 174 7.345691 TGGACCTATCATTAGCATTCTTGAAA 58.654 34.615 0.00 0.00 0.00 2.69
174 175 7.500227 TGGACCTATCATTAGCATTCTTGAAAG 59.500 37.037 0.00 0.00 0.00 2.62
175 176 7.716998 GGACCTATCATTAGCATTCTTGAAAGA 59.283 37.037 0.00 0.00 0.00 2.52
176 177 9.282569 GACCTATCATTAGCATTCTTGAAAGAT 57.717 33.333 0.00 0.00 34.49 2.40
178 179 9.281371 CCTATCATTAGCATTCTTGAAAGATGA 57.719 33.333 0.00 0.00 34.49 2.92
181 182 8.797350 TCATTAGCATTCTTGAAAGATGAAGA 57.203 30.769 0.00 0.00 34.49 2.87
182 183 9.234827 TCATTAGCATTCTTGAAAGATGAAGAA 57.765 29.630 0.00 0.00 41.29 2.52
187 188 9.204570 AGCATTCTTGAAAGATGAAGAATTTTG 57.795 29.630 0.00 0.00 43.34 2.44
188 189 9.199982 GCATTCTTGAAAGATGAAGAATTTTGA 57.800 29.630 0.00 0.00 43.34 2.69
201 202 8.876275 TGAAGAATTTTGAGAAAAGTTCATGG 57.124 30.769 8.52 0.00 33.22 3.66
202 203 8.694540 TGAAGAATTTTGAGAAAAGTTCATGGA 58.305 29.630 8.52 0.00 33.22 3.41
203 204 9.702494 GAAGAATTTTGAGAAAAGTTCATGGAT 57.298 29.630 8.52 0.00 33.22 3.41
207 208 9.835389 AATTTTGAGAAAAGTTCATGGATTTGA 57.165 25.926 0.00 0.00 33.22 2.69
208 209 9.835389 ATTTTGAGAAAAGTTCATGGATTTGAA 57.165 25.926 0.00 0.00 33.22 2.69
210 211 9.664332 TTTGAGAAAAGTTCATGGATTTGAAAA 57.336 25.926 0.00 0.00 37.36 2.29
211 212 9.664332 TTGAGAAAAGTTCATGGATTTGAAAAA 57.336 25.926 0.00 0.00 37.36 1.94
238 239 4.229096 TCATGCATTTGAGAAAAGTTCGC 58.771 39.130 0.00 0.00 34.02 4.70
239 240 3.011949 TGCATTTGAGAAAAGTTCGCC 57.988 42.857 0.00 0.00 34.02 5.54
240 241 2.360483 TGCATTTGAGAAAAGTTCGCCA 59.640 40.909 0.00 0.00 34.02 5.69
241 242 3.181482 TGCATTTGAGAAAAGTTCGCCAA 60.181 39.130 0.00 0.00 34.02 4.52
242 243 3.989817 GCATTTGAGAAAAGTTCGCCAAT 59.010 39.130 0.00 0.00 34.02 3.16
244 245 5.050159 GCATTTGAGAAAAGTTCGCCAATTT 60.050 36.000 0.00 0.00 34.02 1.82
245 246 5.964887 TTTGAGAAAAGTTCGCCAATTTG 57.035 34.783 0.00 0.00 34.02 2.32
246 247 4.909696 TGAGAAAAGTTCGCCAATTTGA 57.090 36.364 0.00 0.00 34.02 2.69
248 249 5.280945 TGAGAAAAGTTCGCCAATTTGAAG 58.719 37.500 0.00 0.00 34.02 3.02
249 250 5.067153 TGAGAAAAGTTCGCCAATTTGAAGA 59.933 36.000 0.00 0.00 34.02 2.87
250 251 5.901552 AGAAAAGTTCGCCAATTTGAAGAA 58.098 33.333 0.00 0.63 34.02 2.52
252 253 6.816140 AGAAAAGTTCGCCAATTTGAAGAAAA 59.184 30.769 0.00 0.00 34.02 2.29
253 254 6.976636 AAAGTTCGCCAATTTGAAGAAAAA 57.023 29.167 0.00 0.00 0.00 1.94
254 255 6.588348 AAGTTCGCCAATTTGAAGAAAAAG 57.412 33.333 0.00 0.00 0.00 2.27
255 256 5.660460 AGTTCGCCAATTTGAAGAAAAAGT 58.340 33.333 0.00 0.00 0.00 2.66
256 257 6.106003 AGTTCGCCAATTTGAAGAAAAAGTT 58.894 32.000 0.00 0.00 0.00 2.66
257 258 5.964887 TCGCCAATTTGAAGAAAAAGTTG 57.035 34.783 0.00 0.00 0.00 3.16
259 260 6.279882 TCGCCAATTTGAAGAAAAAGTTGAT 58.720 32.000 0.00 0.00 0.00 2.57
260 261 6.200665 TCGCCAATTTGAAGAAAAAGTTGATG 59.799 34.615 0.00 0.00 0.00 3.07
261 262 6.138088 GCCAATTTGAAGAAAAAGTTGATGC 58.862 36.000 0.00 0.00 0.00 3.91
265 266 8.770828 CAATTTGAAGAAAAAGTTGATGCATCT 58.229 29.630 26.32 5.12 0.00 2.90
266 267 7.703298 TTTGAAGAAAAAGTTGATGCATCTG 57.297 32.000 26.32 0.00 0.00 2.90
267 268 6.638096 TGAAGAAAAAGTTGATGCATCTGA 57.362 33.333 26.32 13.04 0.00 3.27
270 271 7.980662 TGAAGAAAAAGTTGATGCATCTGAAAA 59.019 29.630 26.32 10.44 0.00 2.29
271 272 7.704789 AGAAAAAGTTGATGCATCTGAAAAC 57.295 32.000 26.32 20.65 0.00 2.43
272 273 7.267128 AGAAAAAGTTGATGCATCTGAAAACA 58.733 30.769 26.32 2.97 0.00 2.83
274 275 8.441312 AAAAAGTTGATGCATCTGAAAACATT 57.559 26.923 26.32 17.37 0.00 2.71
275 276 7.647907 AAAGTTGATGCATCTGAAAACATTC 57.352 32.000 26.32 0.00 0.00 2.67
277 278 6.154445 AGTTGATGCATCTGAAAACATTCAC 58.846 36.000 26.32 2.01 0.00 3.18
278 279 5.708877 TGATGCATCTGAAAACATTCACA 57.291 34.783 26.32 0.00 0.00 3.58
279 280 6.086785 TGATGCATCTGAAAACATTCACAA 57.913 33.333 26.32 0.00 0.00 3.33
280 281 6.514063 TGATGCATCTGAAAACATTCACAAA 58.486 32.000 26.32 0.00 0.00 2.83
281 282 7.156000 TGATGCATCTGAAAACATTCACAAAT 58.844 30.769 26.32 0.00 0.00 2.32
283 284 7.410800 TGCATCTGAAAACATTCACAAATTC 57.589 32.000 0.00 0.00 0.00 2.17
284 285 6.985059 TGCATCTGAAAACATTCACAAATTCA 59.015 30.769 0.00 0.00 0.00 2.57
285 286 7.494952 TGCATCTGAAAACATTCACAAATTCAA 59.505 29.630 0.00 0.00 0.00 2.69
286 287 8.007716 GCATCTGAAAACATTCACAAATTCAAG 58.992 33.333 0.00 0.00 0.00 3.02
287 288 7.467557 TCTGAAAACATTCACAAATTCAAGC 57.532 32.000 0.00 0.00 0.00 4.01
288 289 7.040494 TCTGAAAACATTCACAAATTCAAGCA 58.960 30.769 0.00 0.00 0.00 3.91
289 290 7.548427 TCTGAAAACATTCACAAATTCAAGCAA 59.452 29.630 0.00 0.00 0.00 3.91
290 291 8.037382 TGAAAACATTCACAAATTCAAGCAAA 57.963 26.923 0.00 0.00 0.00 3.68
291 292 8.176365 TGAAAACATTCACAAATTCAAGCAAAG 58.824 29.630 0.00 0.00 0.00 2.77
292 293 7.614124 AAACATTCACAAATTCAAGCAAAGT 57.386 28.000 0.00 0.00 0.00 2.66
293 294 7.614124 AACATTCACAAATTCAAGCAAAGTT 57.386 28.000 0.00 0.00 0.00 2.66
294 295 7.007313 ACATTCACAAATTCAAGCAAAGTTG 57.993 32.000 5.50 5.50 39.44 3.16
295 296 6.817641 ACATTCACAAATTCAAGCAAAGTTGA 59.182 30.769 11.81 0.00 36.57 3.18
296 297 6.645700 TTCACAAATTCAAGCAAAGTTGAC 57.354 33.333 11.81 0.00 36.57 3.18
297 298 5.718146 TCACAAATTCAAGCAAAGTTGACA 58.282 33.333 11.81 0.00 36.57 3.58
298 299 6.162079 TCACAAATTCAAGCAAAGTTGACAA 58.838 32.000 11.81 0.00 36.57 3.18
299 300 6.648310 TCACAAATTCAAGCAAAGTTGACAAA 59.352 30.769 11.81 0.00 36.57 2.83
302 303 7.173047 ACAAATTCAAGCAAAGTTGACAAAGTT 59.827 29.630 11.81 0.00 36.57 2.66
304 305 3.925913 TCAAGCAAAGTTGACAAAGTTGC 59.074 39.130 21.30 21.30 31.31 4.17
305 306 3.591196 AGCAAAGTTGACAAAGTTGCA 57.409 38.095 26.61 0.00 31.06 4.08
306 307 3.924144 AGCAAAGTTGACAAAGTTGCAA 58.076 36.364 26.61 0.00 31.06 4.08
307 308 4.314121 AGCAAAGTTGACAAAGTTGCAAA 58.686 34.783 26.61 0.00 31.06 3.68
308 309 4.754114 AGCAAAGTTGACAAAGTTGCAAAA 59.246 33.333 26.61 0.00 31.06 2.44
312 313 5.844301 AGTTGACAAAGTTGCAAAAACAG 57.156 34.783 0.00 0.00 0.00 3.16
315 316 5.837586 TGACAAAGTTGCAAAAACAGTTC 57.162 34.783 0.00 0.00 0.00 3.01
316 317 5.292765 TGACAAAGTTGCAAAAACAGTTCA 58.707 33.333 0.00 0.00 0.00 3.18
318 319 4.149747 ACAAAGTTGCAAAAACAGTTCACG 59.850 37.500 0.00 0.00 0.00 4.35
319 320 2.258755 AGTTGCAAAAACAGTTCACGC 58.741 42.857 0.00 0.00 0.00 5.34
320 321 1.989165 GTTGCAAAAACAGTTCACGCA 59.011 42.857 0.00 0.54 0.00 5.24
321 322 2.575694 TGCAAAAACAGTTCACGCAT 57.424 40.000 0.00 0.00 0.00 4.73
322 323 2.886081 TGCAAAAACAGTTCACGCATT 58.114 38.095 0.00 0.00 0.00 3.56
324 325 3.061831 TGCAAAAACAGTTCACGCATTTG 59.938 39.130 2.67 2.67 0.00 2.32
327 328 5.669848 GCAAAAACAGTTCACGCATTTGAAA 60.670 36.000 9.21 0.00 37.24 2.69
328 329 6.302615 CAAAAACAGTTCACGCATTTGAAAA 58.697 32.000 1.16 0.00 37.24 2.29
329 330 6.473397 AAAACAGTTCACGCATTTGAAAAA 57.527 29.167 0.00 0.00 37.24 1.94
330 331 5.448926 AACAGTTCACGCATTTGAAAAAC 57.551 34.783 0.00 0.00 37.24 2.43
331 332 4.489810 ACAGTTCACGCATTTGAAAAACA 58.510 34.783 0.00 0.00 37.24 2.83
333 334 5.580297 ACAGTTCACGCATTTGAAAAACATT 59.420 32.000 0.00 0.00 37.24 2.71
334 335 6.091986 ACAGTTCACGCATTTGAAAAACATTT 59.908 30.769 0.00 0.00 37.24 2.32
336 337 8.274939 CAGTTCACGCATTTGAAAAACATTTAT 58.725 29.630 0.00 0.00 37.24 1.40
337 338 8.274939 AGTTCACGCATTTGAAAAACATTTATG 58.725 29.630 0.00 0.00 37.24 1.90
338 339 7.936950 TCACGCATTTGAAAAACATTTATGA 57.063 28.000 0.00 0.00 0.00 2.15
340 341 8.820933 TCACGCATTTGAAAAACATTTATGAAA 58.179 25.926 0.00 0.00 0.00 2.69
341 342 9.596677 CACGCATTTGAAAAACATTTATGAAAT 57.403 25.926 0.00 0.00 0.00 2.17
453 454 8.984891 ATTGACGCATTTGAAAAAGATTATGA 57.015 26.923 0.00 0.00 0.00 2.15
454 455 8.809159 TTGACGCATTTGAAAAAGATTATGAA 57.191 26.923 0.00 0.00 0.00 2.57
455 456 8.984891 TGACGCATTTGAAAAAGATTATGAAT 57.015 26.923 0.00 0.00 0.00 2.57
456 457 9.421806 TGACGCATTTGAAAAAGATTATGAATT 57.578 25.926 0.00 0.00 0.00 2.17
457 458 9.679596 GACGCATTTGAAAAAGATTATGAATTG 57.320 29.630 0.00 0.00 0.00 2.32
458 459 9.421806 ACGCATTTGAAAAAGATTATGAATTGA 57.578 25.926 0.00 0.00 0.00 2.57
486 487 8.836268 AAAAATCACATATCTGCAAACATGTT 57.164 26.923 4.92 4.92 29.31 2.71
489 490 9.926158 AAATCACATATCTGCAAACATGTTAAA 57.074 25.926 12.39 0.00 29.31 1.52
491 492 8.969121 TCACATATCTGCAAACATGTTAAAAG 57.031 30.769 12.39 9.46 29.31 2.27
494 495 9.410556 ACATATCTGCAAACATGTTAAAAGAAC 57.589 29.630 12.39 0.00 0.00 3.01
495 496 6.991485 ATCTGCAAACATGTTAAAAGAACG 57.009 33.333 12.39 0.00 0.00 3.95
497 498 6.556212 TCTGCAAACATGTTAAAAGAACGAA 58.444 32.000 12.39 0.00 0.00 3.85
498 499 7.030165 TCTGCAAACATGTTAAAAGAACGAAA 58.970 30.769 12.39 0.00 0.00 3.46
499 500 7.542477 TCTGCAAACATGTTAAAAGAACGAAAA 59.458 29.630 12.39 0.00 0.00 2.29
500 501 7.670916 TGCAAACATGTTAAAAGAACGAAAAG 58.329 30.769 12.39 0.00 0.00 2.27
501 502 6.623353 GCAAACATGTTAAAAGAACGAAAAGC 59.377 34.615 12.39 0.00 0.00 3.51
502 503 7.670916 CAAACATGTTAAAAGAACGAAAAGCA 58.329 30.769 12.39 0.00 0.00 3.91
503 504 7.820044 AACATGTTAAAAGAACGAAAAGCAA 57.180 28.000 9.97 0.00 0.00 3.91
504 505 7.820044 ACATGTTAAAAGAACGAAAAGCAAA 57.180 28.000 0.00 0.00 0.00 3.68
506 507 8.713271 ACATGTTAAAAGAACGAAAAGCAAAAA 58.287 25.926 0.00 0.00 0.00 1.94
507 508 8.984678 CATGTTAAAAGAACGAAAAGCAAAAAC 58.015 29.630 0.00 0.00 0.00 2.43
508 509 7.511463 TGTTAAAAGAACGAAAAGCAAAAACC 58.489 30.769 0.00 0.00 0.00 3.27
509 510 7.170998 TGTTAAAAGAACGAAAAGCAAAAACCA 59.829 29.630 0.00 0.00 0.00 3.67
510 511 6.546972 AAAAGAACGAAAAGCAAAAACCAA 57.453 29.167 0.00 0.00 0.00 3.67
511 512 6.546972 AAAGAACGAAAAGCAAAAACCAAA 57.453 29.167 0.00 0.00 0.00 3.28
512 513 6.546972 AAGAACGAAAAGCAAAAACCAAAA 57.453 29.167 0.00 0.00 0.00 2.44
513 514 6.546972 AGAACGAAAAGCAAAAACCAAAAA 57.453 29.167 0.00 0.00 0.00 1.94
533 534 5.692115 AAAAGGAGAAAAAGAAAAGGGCA 57.308 34.783 0.00 0.00 0.00 5.36
534 535 5.692115 AAAGGAGAAAAAGAAAAGGGCAA 57.308 34.783 0.00 0.00 0.00 4.52
535 536 5.894298 AAGGAGAAAAAGAAAAGGGCAAT 57.106 34.783 0.00 0.00 0.00 3.56
536 537 6.994421 AAGGAGAAAAAGAAAAGGGCAATA 57.006 33.333 0.00 0.00 0.00 1.90
537 538 6.994421 AGGAGAAAAAGAAAAGGGCAATAA 57.006 33.333 0.00 0.00 0.00 1.40
538 539 7.373617 AGGAGAAAAAGAAAAGGGCAATAAA 57.626 32.000 0.00 0.00 0.00 1.40
539 540 7.801104 AGGAGAAAAAGAAAAGGGCAATAAAA 58.199 30.769 0.00 0.00 0.00 1.52
540 541 8.271458 AGGAGAAAAAGAAAAGGGCAATAAAAA 58.729 29.630 0.00 0.00 0.00 1.94
541 542 9.066892 GGAGAAAAAGAAAAGGGCAATAAAAAT 57.933 29.630 0.00 0.00 0.00 1.82
543 544 9.066892 AGAAAAAGAAAAGGGCAATAAAAATCC 57.933 29.630 0.00 0.00 0.00 3.01
544 545 8.759481 AAAAAGAAAAGGGCAATAAAAATCCA 57.241 26.923 0.00 0.00 0.00 3.41
545 546 8.759481 AAAAGAAAAGGGCAATAAAAATCCAA 57.241 26.923 0.00 0.00 0.00 3.53
546 547 8.759481 AAAGAAAAGGGCAATAAAAATCCAAA 57.241 26.923 0.00 0.00 0.00 3.28
547 548 8.759481 AAGAAAAGGGCAATAAAAATCCAAAA 57.241 26.923 0.00 0.00 0.00 2.44
548 549 8.394971 AGAAAAGGGCAATAAAAATCCAAAAG 57.605 30.769 0.00 0.00 0.00 2.27
549 550 8.217111 AGAAAAGGGCAATAAAAATCCAAAAGA 58.783 29.630 0.00 0.00 0.00 2.52
550 551 8.759481 AAAAGGGCAATAAAAATCCAAAAGAA 57.241 26.923 0.00 0.00 0.00 2.52
551 552 8.759481 AAAGGGCAATAAAAATCCAAAAGAAA 57.241 26.923 0.00 0.00 0.00 2.52
552 553 8.759481 AAGGGCAATAAAAATCCAAAAGAAAA 57.241 26.923 0.00 0.00 0.00 2.29
553 554 8.759481 AGGGCAATAAAAATCCAAAAGAAAAA 57.241 26.923 0.00 0.00 0.00 1.94
554 555 8.629158 AGGGCAATAAAAATCCAAAAGAAAAAC 58.371 29.630 0.00 0.00 0.00 2.43
555 556 7.865385 GGGCAATAAAAATCCAAAAGAAAAACC 59.135 33.333 0.00 0.00 0.00 3.27
556 557 7.589587 GGCAATAAAAATCCAAAAGAAAAACCG 59.410 33.333 0.00 0.00 0.00 4.44
557 558 7.589587 GCAATAAAAATCCAAAAGAAAAACCGG 59.410 33.333 0.00 0.00 0.00 5.28
558 559 5.493133 AAAAATCCAAAAGAAAAACCGGC 57.507 34.783 0.00 0.00 0.00 6.13
559 560 2.831685 ATCCAAAAGAAAAACCGGCC 57.168 45.000 0.00 0.00 0.00 6.13
560 561 1.486211 TCCAAAAGAAAAACCGGCCA 58.514 45.000 0.00 0.00 0.00 5.36
561 562 1.831736 TCCAAAAGAAAAACCGGCCAA 59.168 42.857 0.00 0.00 0.00 4.52
562 563 2.236395 TCCAAAAGAAAAACCGGCCAAA 59.764 40.909 0.00 0.00 0.00 3.28
563 564 3.118223 TCCAAAAGAAAAACCGGCCAAAT 60.118 39.130 0.00 0.00 0.00 2.32
564 565 3.003171 CCAAAAGAAAAACCGGCCAAATG 59.997 43.478 0.00 0.00 0.00 2.32
565 566 3.828875 AAAGAAAAACCGGCCAAATGA 57.171 38.095 0.00 0.00 0.00 2.57
566 567 3.828875 AAGAAAAACCGGCCAAATGAA 57.171 38.095 0.00 0.00 0.00 2.57
567 568 3.106242 AGAAAAACCGGCCAAATGAAC 57.894 42.857 0.00 0.00 0.00 3.18
568 569 2.432510 AGAAAAACCGGCCAAATGAACA 59.567 40.909 0.00 0.00 0.00 3.18
569 570 3.070878 AGAAAAACCGGCCAAATGAACAT 59.929 39.130 0.00 0.00 0.00 2.71
570 571 4.282195 AGAAAAACCGGCCAAATGAACATA 59.718 37.500 0.00 0.00 0.00 2.29
571 572 4.817318 AAAACCGGCCAAATGAACATAT 57.183 36.364 0.00 0.00 0.00 1.78
572 573 5.923733 AAAACCGGCCAAATGAACATATA 57.076 34.783 0.00 0.00 0.00 0.86
573 574 5.923733 AAACCGGCCAAATGAACATATAA 57.076 34.783 0.00 0.00 0.00 0.98
574 575 5.514274 AACCGGCCAAATGAACATATAAG 57.486 39.130 0.00 0.00 0.00 1.73
575 576 4.787551 ACCGGCCAAATGAACATATAAGA 58.212 39.130 0.00 0.00 0.00 2.10
576 577 4.821805 ACCGGCCAAATGAACATATAAGAG 59.178 41.667 0.00 0.00 0.00 2.85
577 578 5.063204 CCGGCCAAATGAACATATAAGAGA 58.937 41.667 2.24 0.00 0.00 3.10
578 579 5.049405 CCGGCCAAATGAACATATAAGAGAC 60.049 44.000 2.24 0.00 0.00 3.36
579 580 5.049405 CGGCCAAATGAACATATAAGAGACC 60.049 44.000 2.24 0.00 0.00 3.85
580 581 5.827797 GGCCAAATGAACATATAAGAGACCA 59.172 40.000 0.00 0.00 0.00 4.02
581 582 6.016777 GGCCAAATGAACATATAAGAGACCAG 60.017 42.308 0.00 0.00 0.00 4.00
582 583 6.514048 GCCAAATGAACATATAAGAGACCAGC 60.514 42.308 0.00 0.00 0.00 4.85
583 584 6.543465 CCAAATGAACATATAAGAGACCAGCA 59.457 38.462 0.00 0.00 0.00 4.41
584 585 7.255035 CCAAATGAACATATAAGAGACCAGCAG 60.255 40.741 0.00 0.00 0.00 4.24
585 586 6.737720 ATGAACATATAAGAGACCAGCAGA 57.262 37.500 0.00 0.00 0.00 4.26
586 587 6.544928 TGAACATATAAGAGACCAGCAGAA 57.455 37.500 0.00 0.00 0.00 3.02
587 588 6.946340 TGAACATATAAGAGACCAGCAGAAA 58.054 36.000 0.00 0.00 0.00 2.52
588 589 7.394016 TGAACATATAAGAGACCAGCAGAAAA 58.606 34.615 0.00 0.00 0.00 2.29
589 590 7.550551 TGAACATATAAGAGACCAGCAGAAAAG 59.449 37.037 0.00 0.00 0.00 2.27
590 591 7.187824 ACATATAAGAGACCAGCAGAAAAGA 57.812 36.000 0.00 0.00 0.00 2.52
591 592 7.624549 ACATATAAGAGACCAGCAGAAAAGAA 58.375 34.615 0.00 0.00 0.00 2.52
592 593 8.103305 ACATATAAGAGACCAGCAGAAAAGAAA 58.897 33.333 0.00 0.00 0.00 2.52
593 594 6.809630 ATAAGAGACCAGCAGAAAAGAAAC 57.190 37.500 0.00 0.00 0.00 2.78
594 595 4.429854 AGAGACCAGCAGAAAAGAAACT 57.570 40.909 0.00 0.00 0.00 2.66
595 596 4.786425 AGAGACCAGCAGAAAAGAAACTT 58.214 39.130 0.00 0.00 0.00 2.66
596 597 4.819088 AGAGACCAGCAGAAAAGAAACTTC 59.181 41.667 0.00 0.00 0.00 3.01
614 615 0.250989 TCGCCGGAAGTTCCCAAAAT 60.251 50.000 16.47 0.00 31.13 1.82
615 616 0.170339 CGCCGGAAGTTCCCAAAATC 59.830 55.000 16.47 0.00 31.13 2.17
617 618 1.824852 GCCGGAAGTTCCCAAAATCAT 59.175 47.619 16.47 0.00 31.13 2.45
620 621 4.440112 GCCGGAAGTTCCCAAAATCATAAG 60.440 45.833 16.47 0.00 31.13 1.73
630 631 3.859386 CCAAAATCATAAGAAACCAGCGC 59.141 43.478 0.00 0.00 0.00 5.92
632 633 4.361451 AAATCATAAGAAACCAGCGCTG 57.639 40.909 30.52 30.52 0.00 5.18
633 634 2.472695 TCATAAGAAACCAGCGCTGT 57.527 45.000 33.75 20.04 0.00 4.40
634 635 2.076100 TCATAAGAAACCAGCGCTGTG 58.924 47.619 33.75 26.31 0.00 3.66
669 671 4.174305 CCCTTTTGTTCGTGGGCT 57.826 55.556 0.00 0.00 32.49 5.19
670 672 2.425562 CCCTTTTGTTCGTGGGCTT 58.574 52.632 0.00 0.00 32.49 4.35
671 673 1.611519 CCCTTTTGTTCGTGGGCTTA 58.388 50.000 0.00 0.00 32.49 3.09
672 674 2.167662 CCCTTTTGTTCGTGGGCTTAT 58.832 47.619 0.00 0.00 32.49 1.73
673 675 2.094752 CCCTTTTGTTCGTGGGCTTATG 60.095 50.000 0.00 0.00 32.49 1.90
674 676 2.595386 CTTTTGTTCGTGGGCTTATGC 58.405 47.619 0.00 0.00 38.76 3.14
675 677 0.519519 TTTGTTCGTGGGCTTATGCG 59.480 50.000 0.00 0.00 40.82 4.73
709 711 2.202557 GCCATTAAACGGCGCCAC 60.203 61.111 28.98 0.00 40.35 5.01
712 714 0.731174 CCATTAAACGGCGCCACAAC 60.731 55.000 28.98 0.00 0.00 3.32
825 833 1.068610 CAAACCGCACACGATTTCCAT 60.069 47.619 0.00 0.00 43.93 3.41
853 861 2.281208 CCCTTTCCGACCGTTGCA 60.281 61.111 0.00 0.00 0.00 4.08
887 895 3.412386 AGAAGAACTCAAATTCACCCCG 58.588 45.455 0.00 0.00 0.00 5.73
888 896 1.534729 AGAACTCAAATTCACCCCGC 58.465 50.000 0.00 0.00 0.00 6.13
889 897 0.526211 GAACTCAAATTCACCCCGCC 59.474 55.000 0.00 0.00 0.00 6.13
890 898 0.898326 AACTCAAATTCACCCCGCCC 60.898 55.000 0.00 0.00 0.00 6.13
894 902 4.733542 AATTCACCCCGCCCCACG 62.734 66.667 0.00 0.00 43.15 4.94
943 952 2.241430 TCATCCTCTTCGTCTCCCAGTA 59.759 50.000 0.00 0.00 0.00 2.74
967 976 4.844884 TCGAGAATCTGAGAAGTCCAGTA 58.155 43.478 0.00 0.00 33.57 2.74
970 979 5.646606 GAGAATCTGAGAAGTCCAGTACAC 58.353 45.833 0.00 0.00 33.57 2.90
977 986 4.409218 GTCCAGTACACGCGGCGA 62.409 66.667 30.94 3.21 0.00 5.54
1809 1827 3.003173 CCAGAGAACGCCCTCCCA 61.003 66.667 1.55 0.00 33.76 4.37
2011 2663 5.179452 CCTTCTTGGGTCTTCCTGAATAA 57.821 43.478 0.00 0.00 36.20 1.40
2137 2790 6.814644 GGAATGTGCATTGAAGATGAAATTGA 59.185 34.615 1.77 0.00 0.00 2.57
2144 2797 7.490079 TGCATTGAAGATGAAATTGAGCAATAC 59.510 33.333 0.00 0.00 0.00 1.89
2196 2942 3.005554 ACTGGTGAGCATTGATCTTTCG 58.994 45.455 3.27 0.00 0.00 3.46
2200 2946 3.009723 GTGAGCATTGATCTTTCGGGAA 58.990 45.455 3.27 0.00 0.00 3.97
2219 2965 4.171754 GGAACTTCTTGAATGCAGATTGC 58.828 43.478 0.00 0.00 45.29 3.56
2264 3048 3.317993 ACGAAACTGAAACTGGAATTGGG 59.682 43.478 0.00 0.00 0.00 4.12
2276 3060 5.336102 ACTGGAATTGGGTTGAAGATGAAT 58.664 37.500 0.00 0.00 0.00 2.57
2280 3064 7.610865 TGGAATTGGGTTGAAGATGAATTTAC 58.389 34.615 0.00 0.00 0.00 2.01
2282 3066 7.362574 GGAATTGGGTTGAAGATGAATTTACGA 60.363 37.037 0.00 0.00 0.00 3.43
2284 3068 7.461182 TTGGGTTGAAGATGAATTTACGAAT 57.539 32.000 0.00 0.00 0.00 3.34
2350 3137 4.004196 ACTACACCTAACAAAGCAGGAC 57.996 45.455 0.00 0.00 35.76 3.85
2452 3251 1.947456 GTCGCCACCTCTGTTTTTCTT 59.053 47.619 0.00 0.00 0.00 2.52
2469 3268 1.749634 TCTTAAGTGCTCGCTACCTCC 59.250 52.381 1.63 0.00 0.00 4.30
2494 3294 4.693283 TCTGTTTGTGTTACTCACCTCTG 58.307 43.478 0.00 0.00 45.61 3.35
2496 3296 4.839121 TGTTTGTGTTACTCACCTCTGTT 58.161 39.130 0.00 0.00 45.61 3.16
2497 3297 4.873827 TGTTTGTGTTACTCACCTCTGTTC 59.126 41.667 0.00 0.00 45.61 3.18
2498 3298 5.116882 GTTTGTGTTACTCACCTCTGTTCT 58.883 41.667 0.00 0.00 45.61 3.01
2499 3299 4.322080 TGTGTTACTCACCTCTGTTCTG 57.678 45.455 0.00 0.00 45.61 3.02
2500 3300 3.704566 TGTGTTACTCACCTCTGTTCTGT 59.295 43.478 0.00 0.00 45.61 3.41
2501 3301 4.161565 TGTGTTACTCACCTCTGTTCTGTT 59.838 41.667 0.00 0.00 45.61 3.16
2502 3302 5.116882 GTGTTACTCACCTCTGTTCTGTTT 58.883 41.667 0.00 0.00 40.84 2.83
2503 3303 5.234543 GTGTTACTCACCTCTGTTCTGTTTC 59.765 44.000 0.00 0.00 40.84 2.78
2504 3304 5.128827 TGTTACTCACCTCTGTTCTGTTTCT 59.871 40.000 0.00 0.00 0.00 2.52
2505 3305 4.065321 ACTCACCTCTGTTCTGTTTCTG 57.935 45.455 0.00 0.00 0.00 3.02
2506 3306 3.452627 ACTCACCTCTGTTCTGTTTCTGT 59.547 43.478 0.00 0.00 0.00 3.41
2507 3307 4.080863 ACTCACCTCTGTTCTGTTTCTGTT 60.081 41.667 0.00 0.00 0.00 3.16
2508 3308 5.128827 ACTCACCTCTGTTCTGTTTCTGTTA 59.871 40.000 0.00 0.00 0.00 2.41
2509 3309 5.357257 TCACCTCTGTTCTGTTTCTGTTAC 58.643 41.667 0.00 0.00 0.00 2.50
2510 3310 5.128827 TCACCTCTGTTCTGTTTCTGTTACT 59.871 40.000 0.00 0.00 0.00 2.24
2511 3311 5.463724 CACCTCTGTTCTGTTTCTGTTACTC 59.536 44.000 0.00 0.00 0.00 2.59
2512 3312 5.128827 ACCTCTGTTCTGTTTCTGTTACTCA 59.871 40.000 0.00 0.00 0.00 3.41
2513 3313 5.463724 CCTCTGTTCTGTTTCTGTTACTCAC 59.536 44.000 0.00 0.00 0.00 3.51
2514 3314 5.972935 TCTGTTCTGTTTCTGTTACTCACA 58.027 37.500 0.00 0.00 0.00 3.58
2515 3315 6.582636 TCTGTTCTGTTTCTGTTACTCACAT 58.417 36.000 0.00 0.00 33.76 3.21
2516 3316 6.701841 TCTGTTCTGTTTCTGTTACTCACATC 59.298 38.462 0.00 0.00 33.76 3.06
2517 3317 6.582636 TGTTCTGTTTCTGTTACTCACATCT 58.417 36.000 0.00 0.00 33.76 2.90
2518 3318 6.701841 TGTTCTGTTTCTGTTACTCACATCTC 59.298 38.462 0.00 0.00 33.76 2.75
2519 3319 6.656632 TCTGTTTCTGTTACTCACATCTCT 57.343 37.500 0.00 0.00 33.76 3.10
2520 3320 6.682746 TCTGTTTCTGTTACTCACATCTCTC 58.317 40.000 0.00 0.00 33.76 3.20
2521 3321 6.265422 TCTGTTTCTGTTACTCACATCTCTCA 59.735 38.462 0.00 0.00 33.76 3.27
2522 3322 6.816136 TGTTTCTGTTACTCACATCTCTCAA 58.184 36.000 0.00 0.00 33.76 3.02
2523 3323 6.701841 TGTTTCTGTTACTCACATCTCTCAAC 59.298 38.462 0.00 0.00 33.76 3.18
2532 3332 4.051237 TCACATCTCTCAACAACGACTTG 58.949 43.478 0.00 0.00 0.00 3.16
2555 3355 4.376819 GCTGTGAACTGAAAATCTCTCACG 60.377 45.833 0.00 0.00 36.76 4.35
2556 3356 3.494626 TGTGAACTGAAAATCTCTCACGC 59.505 43.478 0.00 0.00 36.76 5.34
2557 3357 3.494626 GTGAACTGAAAATCTCTCACGCA 59.505 43.478 0.00 0.00 0.00 5.24
2627 3433 5.647230 TCTAACTTGTATATCGGATGGGGA 58.353 41.667 0.00 0.00 0.00 4.81
2662 3468 3.971702 GGCCAACTGACCTGCCCT 61.972 66.667 0.00 0.00 37.94 5.19
2667 3473 3.537206 AACTGACCTGCCCTGACGC 62.537 63.158 0.00 0.00 0.00 5.19
2703 3509 2.281484 AACCGGACTTGTGCGCAT 60.281 55.556 15.91 0.00 0.00 4.73
2706 3512 2.743752 CCGGACTTGTGCGCATGAG 61.744 63.158 15.91 17.25 0.00 2.90
2707 3513 2.029288 CGGACTTGTGCGCATGAGT 61.029 57.895 23.23 23.23 0.00 3.41
2733 3539 4.916870 AGCGTTGTAACTTCCAAGTTTTC 58.083 39.130 9.92 5.38 46.52 2.29
2739 3545 6.981762 TGTAACTTCCAAGTTTTCGTTACA 57.018 33.333 9.92 8.27 46.52 2.41
2752 3574 8.020861 AGTTTTCGTTACAAGCATTATCGTAA 57.979 30.769 0.00 0.00 0.00 3.18
2784 3606 8.609176 GCGTCATATAGATTCAAAGTTTTACCA 58.391 33.333 0.00 0.00 0.00 3.25
2805 3627 6.058183 ACCATTATCATAGACACTGCCTTTC 58.942 40.000 0.00 0.00 0.00 2.62
2831 3654 2.515926 TGCTGCCGAGACTATGATTC 57.484 50.000 0.00 0.00 0.00 2.52
2882 3705 7.707467 ACTGGGGTAAGTTATATGGAATCTT 57.293 36.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.937175 GCTGCCTATAGTTTTAGAATTTTGTAG 57.063 33.333 0.00 0.00 0.00 2.74
11 12 9.638239 TTTGCTGCCTATAGTTTTAGAATTTTG 57.362 29.630 0.00 0.00 0.00 2.44
12 13 9.639601 GTTTGCTGCCTATAGTTTTAGAATTTT 57.360 29.630 0.00 0.00 0.00 1.82
14 15 7.396055 TGGTTTGCTGCCTATAGTTTTAGAATT 59.604 33.333 0.00 0.00 0.00 2.17
16 17 6.242396 TGGTTTGCTGCCTATAGTTTTAGAA 58.758 36.000 0.00 0.00 0.00 2.10
17 18 5.811190 TGGTTTGCTGCCTATAGTTTTAGA 58.189 37.500 0.00 0.00 0.00 2.10
19 20 6.902771 TTTGGTTTGCTGCCTATAGTTTTA 57.097 33.333 0.00 0.00 0.00 1.52
20 21 5.799827 TTTGGTTTGCTGCCTATAGTTTT 57.200 34.783 0.00 0.00 0.00 2.43
21 22 5.799827 TTTTGGTTTGCTGCCTATAGTTT 57.200 34.783 0.00 0.00 0.00 2.66
22 23 5.799827 TTTTTGGTTTGCTGCCTATAGTT 57.200 34.783 0.00 0.00 0.00 2.24
56 57 4.640201 CGGGATGGCAATAATAGGGTATTG 59.360 45.833 0.00 1.42 42.15 1.90
57 58 4.538490 TCGGGATGGCAATAATAGGGTATT 59.462 41.667 0.00 0.00 0.00 1.89
58 59 4.108570 TCGGGATGGCAATAATAGGGTAT 58.891 43.478 0.00 0.00 0.00 2.73
59 60 3.522759 TCGGGATGGCAATAATAGGGTA 58.477 45.455 0.00 0.00 0.00 3.69
60 61 2.344592 TCGGGATGGCAATAATAGGGT 58.655 47.619 0.00 0.00 0.00 4.34
61 62 3.545703 GATCGGGATGGCAATAATAGGG 58.454 50.000 0.00 0.00 0.00 3.53
62 63 3.118775 TCGATCGGGATGGCAATAATAGG 60.119 47.826 16.41 0.00 0.00 2.57
63 64 4.123497 TCGATCGGGATGGCAATAATAG 57.877 45.455 16.41 0.00 0.00 1.73
64 65 4.545208 TTCGATCGGGATGGCAATAATA 57.455 40.909 16.41 0.00 0.00 0.98
65 66 3.417069 TTCGATCGGGATGGCAATAAT 57.583 42.857 16.41 0.00 0.00 1.28
66 67 2.920724 TTCGATCGGGATGGCAATAA 57.079 45.000 16.41 0.00 0.00 1.40
68 69 2.051334 TTTTCGATCGGGATGGCAAT 57.949 45.000 16.41 0.00 0.00 3.56
69 70 2.051334 ATTTTCGATCGGGATGGCAA 57.949 45.000 16.41 0.00 0.00 4.52
71 72 7.730364 AATATATATTTTCGATCGGGATGGC 57.270 36.000 16.41 0.00 0.00 4.40
95 96 7.818446 GTCCTTTTTGTTTACCCTAACAACAAA 59.182 33.333 5.54 5.54 45.00 2.83
97 98 6.664384 AGTCCTTTTTGTTTACCCTAACAACA 59.336 34.615 0.00 0.00 45.00 3.33
99 100 7.721409 AAGTCCTTTTTGTTTACCCTAACAA 57.279 32.000 0.00 0.00 44.01 2.83
100 101 7.721409 AAAGTCCTTTTTGTTTACCCTAACA 57.279 32.000 0.00 0.00 36.30 2.41
101 102 8.252417 TGAAAAGTCCTTTTTGTTTACCCTAAC 58.748 33.333 6.48 0.00 42.26 2.34
102 103 8.252417 GTGAAAAGTCCTTTTTGTTTACCCTAA 58.748 33.333 6.48 0.00 42.26 2.69
104 105 6.351541 GGTGAAAAGTCCTTTTTGTTTACCCT 60.352 38.462 6.48 0.00 42.26 4.34
106 107 5.517411 CGGTGAAAAGTCCTTTTTGTTTACC 59.483 40.000 6.48 8.99 42.26 2.85
107 108 5.005012 GCGGTGAAAAGTCCTTTTTGTTTAC 59.995 40.000 6.48 2.81 42.26 2.01
109 110 3.930229 GCGGTGAAAAGTCCTTTTTGTTT 59.070 39.130 6.48 0.00 42.26 2.83
110 111 3.194755 AGCGGTGAAAAGTCCTTTTTGTT 59.805 39.130 6.48 0.00 42.26 2.83
111 112 2.758423 AGCGGTGAAAAGTCCTTTTTGT 59.242 40.909 6.48 0.00 42.26 2.83
116 117 1.172812 GCCAGCGGTGAAAAGTCCTT 61.173 55.000 17.83 0.00 0.00 3.36
117 118 1.600916 GCCAGCGGTGAAAAGTCCT 60.601 57.895 17.83 0.00 0.00 3.85
118 119 2.626780 GGCCAGCGGTGAAAAGTCC 61.627 63.158 17.83 3.43 0.00 3.85
119 120 2.626780 GGGCCAGCGGTGAAAAGTC 61.627 63.158 17.83 0.00 0.00 3.01
120 121 2.597510 GGGCCAGCGGTGAAAAGT 60.598 61.111 17.83 0.00 0.00 2.66
121 122 1.743321 TTTGGGCCAGCGGTGAAAAG 61.743 55.000 17.83 0.00 0.00 2.27
122 123 1.118356 ATTTGGGCCAGCGGTGAAAA 61.118 50.000 17.83 11.09 0.00 2.29
123 124 1.532794 ATTTGGGCCAGCGGTGAAA 60.533 52.632 17.83 8.93 0.00 2.69
126 127 3.762247 CCATTTGGGCCAGCGGTG 61.762 66.667 6.23 7.86 0.00 4.94
127 128 3.521765 TTCCATTTGGGCCAGCGGT 62.522 57.895 6.23 0.00 36.21 5.68
128 129 1.616091 ATTTCCATTTGGGCCAGCGG 61.616 55.000 6.23 9.04 36.21 5.52
129 130 0.249955 AATTTCCATTTGGGCCAGCG 59.750 50.000 6.23 0.00 36.21 5.18
131 132 1.907936 TCCAATTTCCATTTGGGCCAG 59.092 47.619 6.23 0.00 43.19 4.85
132 133 1.627834 GTCCAATTTCCATTTGGGCCA 59.372 47.619 0.00 0.00 41.92 5.36
133 134 2.401583 GTCCAATTTCCATTTGGGCC 57.598 50.000 0.00 0.00 41.92 5.80
134 135 1.908619 AGGTCCAATTTCCATTTGGGC 59.091 47.619 2.84 0.71 46.01 5.36
135 136 4.961730 TGATAGGTCCAATTTCCATTTGGG 59.038 41.667 2.84 0.00 43.19 4.12
136 137 6.736110 ATGATAGGTCCAATTTCCATTTGG 57.264 37.500 0.00 0.00 44.14 3.28
137 138 7.869429 GCTAATGATAGGTCCAATTTCCATTTG 59.131 37.037 0.00 0.00 0.00 2.32
138 139 7.564660 TGCTAATGATAGGTCCAATTTCCATTT 59.435 33.333 0.00 0.00 0.00 2.32
139 140 7.068702 TGCTAATGATAGGTCCAATTTCCATT 58.931 34.615 0.00 0.00 0.00 3.16
140 141 6.613699 TGCTAATGATAGGTCCAATTTCCAT 58.386 36.000 0.00 0.00 0.00 3.41
141 142 6.012337 TGCTAATGATAGGTCCAATTTCCA 57.988 37.500 0.00 0.00 0.00 3.53
142 143 7.449704 AGAATGCTAATGATAGGTCCAATTTCC 59.550 37.037 0.00 0.00 0.00 3.13
143 144 8.401490 AGAATGCTAATGATAGGTCCAATTTC 57.599 34.615 0.00 0.00 0.00 2.17
145 146 8.000709 TCAAGAATGCTAATGATAGGTCCAATT 58.999 33.333 0.00 0.00 0.00 2.32
146 147 7.520798 TCAAGAATGCTAATGATAGGTCCAAT 58.479 34.615 0.00 0.00 0.00 3.16
147 148 6.899089 TCAAGAATGCTAATGATAGGTCCAA 58.101 36.000 0.00 0.00 0.00 3.53
148 149 6.499106 TCAAGAATGCTAATGATAGGTCCA 57.501 37.500 0.00 0.00 0.00 4.02
149 150 7.716998 TCTTTCAAGAATGCTAATGATAGGTCC 59.283 37.037 0.00 0.00 30.73 4.46
150 151 8.668510 TCTTTCAAGAATGCTAATGATAGGTC 57.331 34.615 0.00 0.00 30.73 3.85
151 152 9.064706 CATCTTTCAAGAATGCTAATGATAGGT 57.935 33.333 0.00 0.00 38.77 3.08
156 157 8.797350 TCTTCATCTTTCAAGAATGCTAATGA 57.203 30.769 0.00 0.00 38.77 2.57
161 162 9.204570 CAAAATTCTTCATCTTTCAAGAATGCT 57.795 29.630 7.49 0.00 44.87 3.79
175 176 9.485206 CCATGAACTTTTCTCAAAATTCTTCAT 57.515 29.630 0.00 0.00 33.60 2.57
176 177 8.694540 TCCATGAACTTTTCTCAAAATTCTTCA 58.305 29.630 0.00 0.00 0.00 3.02
181 182 9.835389 TCAAATCCATGAACTTTTCTCAAAATT 57.165 25.926 0.00 0.00 0.00 1.82
182 183 9.835389 TTCAAATCCATGAACTTTTCTCAAAAT 57.165 25.926 0.00 0.00 34.50 1.82
184 185 9.664332 TTTTCAAATCCATGAACTTTTCTCAAA 57.336 25.926 0.00 0.00 38.95 2.69
211 212 8.277713 CGAACTTTTCTCAAATGCATGATTTTT 58.722 29.630 0.00 0.00 31.41 1.94
212 213 7.569957 GCGAACTTTTCTCAAATGCATGATTTT 60.570 33.333 0.00 0.00 31.41 1.82
213 214 6.128742 GCGAACTTTTCTCAAATGCATGATTT 60.129 34.615 0.00 0.00 34.34 2.17
214 215 5.346822 GCGAACTTTTCTCAAATGCATGATT 59.653 36.000 0.00 0.00 0.00 2.57
217 218 3.365820 GGCGAACTTTTCTCAAATGCATG 59.634 43.478 0.00 0.00 0.00 4.06
218 219 3.005684 TGGCGAACTTTTCTCAAATGCAT 59.994 39.130 0.00 0.00 0.00 3.96
219 220 2.360483 TGGCGAACTTTTCTCAAATGCA 59.640 40.909 0.00 0.00 0.00 3.96
220 221 3.011949 TGGCGAACTTTTCTCAAATGC 57.988 42.857 0.00 0.00 0.00 3.56
221 222 6.200665 TCAAATTGGCGAACTTTTCTCAAATG 59.799 34.615 0.00 0.00 0.00 2.32
223 224 5.655488 TCAAATTGGCGAACTTTTCTCAAA 58.345 33.333 0.00 0.00 0.00 2.69
225 226 4.909696 TCAAATTGGCGAACTTTTCTCA 57.090 36.364 0.00 0.00 0.00 3.27
226 227 5.519722 TCTTCAAATTGGCGAACTTTTCTC 58.480 37.500 0.00 0.00 0.00 2.87
227 228 5.514274 TCTTCAAATTGGCGAACTTTTCT 57.486 34.783 0.00 0.00 0.00 2.52
229 230 6.976636 TTTTCTTCAAATTGGCGAACTTTT 57.023 29.167 0.00 0.00 0.00 2.27
230 231 6.593770 ACTTTTTCTTCAAATTGGCGAACTTT 59.406 30.769 0.00 0.00 0.00 2.66
232 233 5.660460 ACTTTTTCTTCAAATTGGCGAACT 58.340 33.333 0.00 0.00 0.00 3.01
233 234 5.966636 ACTTTTTCTTCAAATTGGCGAAC 57.033 34.783 0.00 0.00 0.00 3.95
234 235 6.102663 TCAACTTTTTCTTCAAATTGGCGAA 58.897 32.000 0.00 0.00 0.00 4.70
236 237 5.964887 TCAACTTTTTCTTCAAATTGGCG 57.035 34.783 0.00 0.00 0.00 5.69
238 239 7.249186 TGCATCAACTTTTTCTTCAAATTGG 57.751 32.000 0.00 0.00 0.00 3.16
239 240 8.770828 AGATGCATCAACTTTTTCTTCAAATTG 58.229 29.630 27.81 0.00 0.00 2.32
240 241 8.770828 CAGATGCATCAACTTTTTCTTCAAATT 58.229 29.630 27.81 0.00 0.00 1.82
241 242 8.145767 TCAGATGCATCAACTTTTTCTTCAAAT 58.854 29.630 27.81 0.00 0.00 2.32
242 243 7.490840 TCAGATGCATCAACTTTTTCTTCAAA 58.509 30.769 27.81 0.00 0.00 2.69
244 245 6.638096 TCAGATGCATCAACTTTTTCTTCA 57.362 33.333 27.81 0.00 0.00 3.02
245 246 7.935338 TTTCAGATGCATCAACTTTTTCTTC 57.065 32.000 27.81 0.00 0.00 2.87
246 247 7.765360 TGTTTTCAGATGCATCAACTTTTTCTT 59.235 29.630 27.81 0.51 0.00 2.52
248 249 7.467557 TGTTTTCAGATGCATCAACTTTTTC 57.532 32.000 27.81 11.46 0.00 2.29
249 250 8.441312 AATGTTTTCAGATGCATCAACTTTTT 57.559 26.923 27.81 14.25 0.00 1.94
250 251 7.711772 TGAATGTTTTCAGATGCATCAACTTTT 59.288 29.630 27.81 18.14 36.94 2.27
252 253 6.643770 GTGAATGTTTTCAGATGCATCAACTT 59.356 34.615 27.81 17.07 42.41 2.66
253 254 6.154445 GTGAATGTTTTCAGATGCATCAACT 58.846 36.000 27.81 8.89 42.41 3.16
254 255 5.921976 TGTGAATGTTTTCAGATGCATCAAC 59.078 36.000 27.81 21.54 42.41 3.18
255 256 6.086785 TGTGAATGTTTTCAGATGCATCAA 57.913 33.333 27.81 12.16 42.41 2.57
256 257 5.708877 TGTGAATGTTTTCAGATGCATCA 57.291 34.783 27.81 6.02 42.41 3.07
257 258 7.591006 ATTTGTGAATGTTTTCAGATGCATC 57.409 32.000 19.37 19.37 42.41 3.91
259 260 6.985059 TGAATTTGTGAATGTTTTCAGATGCA 59.015 30.769 0.00 0.00 42.41 3.96
260 261 7.410800 TGAATTTGTGAATGTTTTCAGATGC 57.589 32.000 0.00 0.00 42.41 3.91
261 262 8.007716 GCTTGAATTTGTGAATGTTTTCAGATG 58.992 33.333 0.00 0.00 42.41 2.90
265 266 7.606858 TTGCTTGAATTTGTGAATGTTTTCA 57.393 28.000 0.00 0.00 39.54 2.69
266 267 8.177013 ACTTTGCTTGAATTTGTGAATGTTTTC 58.823 29.630 0.00 0.00 0.00 2.29
267 268 8.042944 ACTTTGCTTGAATTTGTGAATGTTTT 57.957 26.923 0.00 0.00 0.00 2.43
270 271 6.817641 TCAACTTTGCTTGAATTTGTGAATGT 59.182 30.769 0.00 0.00 0.00 2.71
271 272 7.121272 GTCAACTTTGCTTGAATTTGTGAATG 58.879 34.615 0.00 0.00 31.90 2.67
272 273 6.817641 TGTCAACTTTGCTTGAATTTGTGAAT 59.182 30.769 0.00 0.00 31.90 2.57
274 275 5.718146 TGTCAACTTTGCTTGAATTTGTGA 58.282 33.333 0.00 0.00 31.90 3.58
275 276 6.406093 TTGTCAACTTTGCTTGAATTTGTG 57.594 33.333 0.00 0.00 31.90 3.33
277 278 7.064060 ACTTTGTCAACTTTGCTTGAATTTG 57.936 32.000 0.00 0.00 31.90 2.32
278 279 7.520686 CAACTTTGTCAACTTTGCTTGAATTT 58.479 30.769 0.00 0.00 31.90 1.82
279 280 6.402442 GCAACTTTGTCAACTTTGCTTGAATT 60.402 34.615 17.53 0.00 39.57 2.17
280 281 5.063817 GCAACTTTGTCAACTTTGCTTGAAT 59.936 36.000 17.53 0.00 39.57 2.57
281 282 4.388469 GCAACTTTGTCAACTTTGCTTGAA 59.612 37.500 17.53 0.00 39.57 2.69
283 284 3.679025 TGCAACTTTGTCAACTTTGCTTG 59.321 39.130 22.17 5.72 42.48 4.01
284 285 3.924144 TGCAACTTTGTCAACTTTGCTT 58.076 36.364 22.17 0.00 42.48 3.91
285 286 3.591196 TGCAACTTTGTCAACTTTGCT 57.409 38.095 22.17 0.00 42.48 3.91
286 287 4.660352 TTTGCAACTTTGTCAACTTTGC 57.340 36.364 17.81 17.81 42.37 3.68
287 288 6.425504 TGTTTTTGCAACTTTGTCAACTTTG 58.574 32.000 0.00 2.23 0.00 2.77
288 289 6.259829 ACTGTTTTTGCAACTTTGTCAACTTT 59.740 30.769 0.00 0.00 0.00 2.66
289 290 5.757808 ACTGTTTTTGCAACTTTGTCAACTT 59.242 32.000 0.00 0.00 0.00 2.66
290 291 5.296748 ACTGTTTTTGCAACTTTGTCAACT 58.703 33.333 0.00 0.00 0.00 3.16
291 292 5.590104 ACTGTTTTTGCAACTTTGTCAAC 57.410 34.783 0.00 0.00 0.00 3.18
292 293 5.755375 TGAACTGTTTTTGCAACTTTGTCAA 59.245 32.000 0.00 0.00 0.00 3.18
293 294 5.176590 GTGAACTGTTTTTGCAACTTTGTCA 59.823 36.000 0.00 0.00 0.00 3.58
294 295 5.608146 GTGAACTGTTTTTGCAACTTTGTC 58.392 37.500 0.00 0.00 0.00 3.18
295 296 4.149747 CGTGAACTGTTTTTGCAACTTTGT 59.850 37.500 0.00 0.00 0.00 2.83
296 297 4.627098 CGTGAACTGTTTTTGCAACTTTG 58.373 39.130 0.00 0.00 0.00 2.77
297 298 3.122780 GCGTGAACTGTTTTTGCAACTTT 59.877 39.130 0.00 0.00 0.00 2.66
298 299 2.666022 GCGTGAACTGTTTTTGCAACTT 59.334 40.909 0.00 0.00 0.00 2.66
299 300 2.258755 GCGTGAACTGTTTTTGCAACT 58.741 42.857 0.00 0.00 0.00 3.16
302 303 2.575694 ATGCGTGAACTGTTTTTGCA 57.424 40.000 13.99 13.99 35.10 4.08
304 305 5.447478 TTCAAATGCGTGAACTGTTTTTG 57.553 34.783 0.00 0.90 32.56 2.44
305 306 6.473397 TTTTCAAATGCGTGAACTGTTTTT 57.527 29.167 0.00 0.00 37.24 1.94
306 307 6.073548 TGTTTTTCAAATGCGTGAACTGTTTT 60.074 30.769 0.00 0.00 37.24 2.43
307 308 5.406780 TGTTTTTCAAATGCGTGAACTGTTT 59.593 32.000 0.00 0.00 37.24 2.83
308 309 4.926238 TGTTTTTCAAATGCGTGAACTGTT 59.074 33.333 0.00 0.00 37.24 3.16
312 313 8.272176 TCATAAATGTTTTTCAAATGCGTGAAC 58.728 29.630 0.00 0.00 37.24 3.18
315 316 8.984482 TTTCATAAATGTTTTTCAAATGCGTG 57.016 26.923 0.00 0.00 0.00 5.34
427 428 9.421806 TCATAATCTTTTTCAAATGCGTCAATT 57.578 25.926 0.00 0.00 0.00 2.32
428 429 8.984891 TCATAATCTTTTTCAAATGCGTCAAT 57.015 26.923 0.00 0.00 0.00 2.57
430 431 8.984891 ATTCATAATCTTTTTCAAATGCGTCA 57.015 26.923 0.00 0.00 0.00 4.35
431 432 9.679596 CAATTCATAATCTTTTTCAAATGCGTC 57.320 29.630 0.00 0.00 0.00 5.19
432 433 9.421806 TCAATTCATAATCTTTTTCAAATGCGT 57.578 25.926 0.00 0.00 0.00 5.24
461 462 8.836268 AACATGTTTGCAGATATGTGATTTTT 57.164 26.923 18.31 1.40 34.28 1.94
462 463 9.926158 TTAACATGTTTGCAGATATGTGATTTT 57.074 25.926 18.31 6.87 34.28 1.82
463 464 9.926158 TTTAACATGTTTGCAGATATGTGATTT 57.074 25.926 18.31 7.19 34.28 2.17
464 465 9.926158 TTTTAACATGTTTGCAGATATGTGATT 57.074 25.926 18.31 7.50 34.28 2.57
466 467 8.791675 TCTTTTAACATGTTTGCAGATATGTGA 58.208 29.630 18.31 9.83 34.28 3.58
467 468 8.969121 TCTTTTAACATGTTTGCAGATATGTG 57.031 30.769 18.31 7.50 34.28 3.21
468 469 9.410556 GTTCTTTTAACATGTTTGCAGATATGT 57.589 29.630 17.78 12.98 35.43 2.29
469 470 8.577939 CGTTCTTTTAACATGTTTGCAGATATG 58.422 33.333 17.78 11.73 0.00 1.78
471 472 7.866729 TCGTTCTTTTAACATGTTTGCAGATA 58.133 30.769 17.78 0.00 0.00 1.98
472 473 6.734137 TCGTTCTTTTAACATGTTTGCAGAT 58.266 32.000 17.78 0.00 0.00 2.90
473 474 6.125327 TCGTTCTTTTAACATGTTTGCAGA 57.875 33.333 17.78 12.08 0.00 4.26
474 475 6.804534 TTCGTTCTTTTAACATGTTTGCAG 57.195 33.333 17.78 9.96 0.00 4.41
476 477 6.623353 GCTTTTCGTTCTTTTAACATGTTTGC 59.377 34.615 17.78 0.00 0.00 3.68
477 478 7.670916 TGCTTTTCGTTCTTTTAACATGTTTG 58.329 30.769 17.78 5.43 0.00 2.93
479 480 7.820044 TTGCTTTTCGTTCTTTTAACATGTT 57.180 28.000 16.68 16.68 0.00 2.71
481 482 8.984678 GTTTTTGCTTTTCGTTCTTTTAACATG 58.015 29.630 0.00 0.00 0.00 3.21
482 483 8.172484 GGTTTTTGCTTTTCGTTCTTTTAACAT 58.828 29.630 0.00 0.00 0.00 2.71
483 484 7.170998 TGGTTTTTGCTTTTCGTTCTTTTAACA 59.829 29.630 0.00 0.00 0.00 2.41
484 485 7.511463 TGGTTTTTGCTTTTCGTTCTTTTAAC 58.489 30.769 0.00 0.00 0.00 2.01
485 486 7.653767 TGGTTTTTGCTTTTCGTTCTTTTAA 57.346 28.000 0.00 0.00 0.00 1.52
486 487 7.653767 TTGGTTTTTGCTTTTCGTTCTTTTA 57.346 28.000 0.00 0.00 0.00 1.52
489 490 6.546972 TTTTGGTTTTTGCTTTTCGTTCTT 57.453 29.167 0.00 0.00 0.00 2.52
510 511 6.061022 TGCCCTTTTCTTTTTCTCCTTTTT 57.939 33.333 0.00 0.00 0.00 1.94
511 512 5.692115 TGCCCTTTTCTTTTTCTCCTTTT 57.308 34.783 0.00 0.00 0.00 2.27
512 513 5.692115 TTGCCCTTTTCTTTTTCTCCTTT 57.308 34.783 0.00 0.00 0.00 3.11
513 514 5.894298 ATTGCCCTTTTCTTTTTCTCCTT 57.106 34.783 0.00 0.00 0.00 3.36
514 515 6.994421 TTATTGCCCTTTTCTTTTTCTCCT 57.006 33.333 0.00 0.00 0.00 3.69
515 516 8.445275 TTTTTATTGCCCTTTTCTTTTTCTCC 57.555 30.769 0.00 0.00 0.00 3.71
517 518 9.066892 GGATTTTTATTGCCCTTTTCTTTTTCT 57.933 29.630 0.00 0.00 0.00 2.52
518 519 8.845227 TGGATTTTTATTGCCCTTTTCTTTTTC 58.155 29.630 0.00 0.00 0.00 2.29
519 520 8.759481 TGGATTTTTATTGCCCTTTTCTTTTT 57.241 26.923 0.00 0.00 0.00 1.94
520 521 8.759481 TTGGATTTTTATTGCCCTTTTCTTTT 57.241 26.923 0.00 0.00 0.00 2.27
521 522 8.759481 TTTGGATTTTTATTGCCCTTTTCTTT 57.241 26.923 0.00 0.00 0.00 2.52
522 523 8.759481 TTTTGGATTTTTATTGCCCTTTTCTT 57.241 26.923 0.00 0.00 0.00 2.52
523 524 8.217111 TCTTTTGGATTTTTATTGCCCTTTTCT 58.783 29.630 0.00 0.00 0.00 2.52
524 525 8.389779 TCTTTTGGATTTTTATTGCCCTTTTC 57.610 30.769 0.00 0.00 0.00 2.29
525 526 8.759481 TTCTTTTGGATTTTTATTGCCCTTTT 57.241 26.923 0.00 0.00 0.00 2.27
526 527 8.759481 TTTCTTTTGGATTTTTATTGCCCTTT 57.241 26.923 0.00 0.00 0.00 3.11
527 528 8.759481 TTTTCTTTTGGATTTTTATTGCCCTT 57.241 26.923 0.00 0.00 0.00 3.95
528 529 8.629158 GTTTTTCTTTTGGATTTTTATTGCCCT 58.371 29.630 0.00 0.00 0.00 5.19
529 530 7.865385 GGTTTTTCTTTTGGATTTTTATTGCCC 59.135 33.333 0.00 0.00 0.00 5.36
530 531 7.589587 CGGTTTTTCTTTTGGATTTTTATTGCC 59.410 33.333 0.00 0.00 0.00 4.52
531 532 7.589587 CCGGTTTTTCTTTTGGATTTTTATTGC 59.410 33.333 0.00 0.00 0.00 3.56
532 533 7.589587 GCCGGTTTTTCTTTTGGATTTTTATTG 59.410 33.333 1.90 0.00 0.00 1.90
533 534 7.255312 GGCCGGTTTTTCTTTTGGATTTTTATT 60.255 33.333 1.90 0.00 0.00 1.40
534 535 6.205853 GGCCGGTTTTTCTTTTGGATTTTTAT 59.794 34.615 1.90 0.00 0.00 1.40
535 536 5.527951 GGCCGGTTTTTCTTTTGGATTTTTA 59.472 36.000 1.90 0.00 0.00 1.52
536 537 4.336993 GGCCGGTTTTTCTTTTGGATTTTT 59.663 37.500 1.90 0.00 0.00 1.94
537 538 3.880490 GGCCGGTTTTTCTTTTGGATTTT 59.120 39.130 1.90 0.00 0.00 1.82
538 539 3.118223 TGGCCGGTTTTTCTTTTGGATTT 60.118 39.130 1.90 0.00 0.00 2.17
539 540 2.436173 TGGCCGGTTTTTCTTTTGGATT 59.564 40.909 1.90 0.00 0.00 3.01
540 541 2.043227 TGGCCGGTTTTTCTTTTGGAT 58.957 42.857 1.90 0.00 0.00 3.41
541 542 1.486211 TGGCCGGTTTTTCTTTTGGA 58.514 45.000 1.90 0.00 0.00 3.53
542 543 2.317530 TTGGCCGGTTTTTCTTTTGG 57.682 45.000 1.90 0.00 0.00 3.28
543 544 3.873952 TCATTTGGCCGGTTTTTCTTTTG 59.126 39.130 1.90 0.00 0.00 2.44
544 545 4.143986 TCATTTGGCCGGTTTTTCTTTT 57.856 36.364 1.90 0.00 0.00 2.27
545 546 3.828875 TCATTTGGCCGGTTTTTCTTT 57.171 38.095 1.90 0.00 0.00 2.52
546 547 3.118592 TGTTCATTTGGCCGGTTTTTCTT 60.119 39.130 1.90 0.00 0.00 2.52
547 548 2.432510 TGTTCATTTGGCCGGTTTTTCT 59.567 40.909 1.90 0.00 0.00 2.52
548 549 2.827652 TGTTCATTTGGCCGGTTTTTC 58.172 42.857 1.90 0.00 0.00 2.29
549 550 2.990066 TGTTCATTTGGCCGGTTTTT 57.010 40.000 1.90 0.00 0.00 1.94
550 551 4.817318 ATATGTTCATTTGGCCGGTTTT 57.183 36.364 1.90 0.00 0.00 2.43
551 552 5.654650 TCTTATATGTTCATTTGGCCGGTTT 59.345 36.000 1.90 0.00 0.00 3.27
552 553 5.197451 TCTTATATGTTCATTTGGCCGGTT 58.803 37.500 1.90 0.00 0.00 4.44
553 554 4.787551 TCTTATATGTTCATTTGGCCGGT 58.212 39.130 1.90 0.00 0.00 5.28
554 555 5.049405 GTCTCTTATATGTTCATTTGGCCGG 60.049 44.000 0.00 0.00 0.00 6.13
555 556 5.049405 GGTCTCTTATATGTTCATTTGGCCG 60.049 44.000 0.00 0.00 0.00 6.13
556 557 5.827797 TGGTCTCTTATATGTTCATTTGGCC 59.172 40.000 0.00 0.00 0.00 5.36
557 558 6.514048 GCTGGTCTCTTATATGTTCATTTGGC 60.514 42.308 0.00 0.00 0.00 4.52
558 559 6.543465 TGCTGGTCTCTTATATGTTCATTTGG 59.457 38.462 0.00 0.00 0.00 3.28
559 560 7.496920 TCTGCTGGTCTCTTATATGTTCATTTG 59.503 37.037 0.00 0.00 0.00 2.32
560 561 7.568349 TCTGCTGGTCTCTTATATGTTCATTT 58.432 34.615 0.00 0.00 0.00 2.32
561 562 7.129457 TCTGCTGGTCTCTTATATGTTCATT 57.871 36.000 0.00 0.00 0.00 2.57
562 563 6.737720 TCTGCTGGTCTCTTATATGTTCAT 57.262 37.500 0.00 0.00 0.00 2.57
563 564 6.544928 TTCTGCTGGTCTCTTATATGTTCA 57.455 37.500 0.00 0.00 0.00 3.18
564 565 7.766278 TCTTTTCTGCTGGTCTCTTATATGTTC 59.234 37.037 0.00 0.00 0.00 3.18
565 566 7.624549 TCTTTTCTGCTGGTCTCTTATATGTT 58.375 34.615 0.00 0.00 0.00 2.71
566 567 7.187824 TCTTTTCTGCTGGTCTCTTATATGT 57.812 36.000 0.00 0.00 0.00 2.29
567 568 8.394121 GTTTCTTTTCTGCTGGTCTCTTATATG 58.606 37.037 0.00 0.00 0.00 1.78
568 569 8.325046 AGTTTCTTTTCTGCTGGTCTCTTATAT 58.675 33.333 0.00 0.00 0.00 0.86
569 570 7.680730 AGTTTCTTTTCTGCTGGTCTCTTATA 58.319 34.615 0.00 0.00 0.00 0.98
570 571 6.538263 AGTTTCTTTTCTGCTGGTCTCTTAT 58.462 36.000 0.00 0.00 0.00 1.73
571 572 5.930135 AGTTTCTTTTCTGCTGGTCTCTTA 58.070 37.500 0.00 0.00 0.00 2.10
572 573 4.786425 AGTTTCTTTTCTGCTGGTCTCTT 58.214 39.130 0.00 0.00 0.00 2.85
573 574 4.429854 AGTTTCTTTTCTGCTGGTCTCT 57.570 40.909 0.00 0.00 0.00 3.10
574 575 4.319118 CGAAGTTTCTTTTCTGCTGGTCTC 60.319 45.833 0.00 0.00 0.00 3.36
575 576 3.561725 CGAAGTTTCTTTTCTGCTGGTCT 59.438 43.478 0.00 0.00 0.00 3.85
576 577 3.850010 GCGAAGTTTCTTTTCTGCTGGTC 60.850 47.826 0.00 0.00 0.00 4.02
577 578 2.033424 GCGAAGTTTCTTTTCTGCTGGT 59.967 45.455 0.00 0.00 0.00 4.00
578 579 2.605580 GGCGAAGTTTCTTTTCTGCTGG 60.606 50.000 0.00 0.00 0.00 4.85
579 580 2.654987 GGCGAAGTTTCTTTTCTGCTG 58.345 47.619 0.00 0.00 0.00 4.41
580 581 1.264288 CGGCGAAGTTTCTTTTCTGCT 59.736 47.619 0.00 0.00 0.00 4.24
581 582 1.663161 CCGGCGAAGTTTCTTTTCTGC 60.663 52.381 9.30 0.00 0.00 4.26
582 583 1.871039 TCCGGCGAAGTTTCTTTTCTG 59.129 47.619 9.30 0.00 0.00 3.02
583 584 2.249844 TCCGGCGAAGTTTCTTTTCT 57.750 45.000 9.30 0.00 0.00 2.52
584 585 2.917363 CTTCCGGCGAAGTTTCTTTTC 58.083 47.619 9.30 0.00 40.65 2.29
594 595 0.465824 TTTTGGGAACTTCCGGCGAA 60.466 50.000 9.30 0.00 37.43 4.70
595 596 0.250989 ATTTTGGGAACTTCCGGCGA 60.251 50.000 9.30 0.00 37.43 5.54
596 597 0.170339 GATTTTGGGAACTTCCGGCG 59.830 55.000 0.00 0.00 37.43 6.46
605 606 5.336372 CGCTGGTTTCTTATGATTTTGGGAA 60.336 40.000 0.00 0.00 0.00 3.97
607 608 4.423732 CGCTGGTTTCTTATGATTTTGGG 58.576 43.478 0.00 0.00 0.00 4.12
614 615 2.076100 CACAGCGCTGGTTTCTTATGA 58.924 47.619 38.27 0.00 34.19 2.15
615 616 1.466360 GCACAGCGCTGGTTTCTTATG 60.466 52.381 38.27 25.51 37.77 1.90
617 618 0.533978 TGCACAGCGCTGGTTTCTTA 60.534 50.000 38.27 16.01 43.06 2.10
620 621 2.253452 CTGCACAGCGCTGGTTTC 59.747 61.111 38.27 23.75 43.06 2.78
630 631 1.308069 GGCCCATGTACACTGCACAG 61.308 60.000 13.23 0.00 0.00 3.66
632 633 2.398554 CGGCCCATGTACACTGCAC 61.399 63.158 13.23 4.37 0.00 4.57
633 634 2.046411 CGGCCCATGTACACTGCA 60.046 61.111 13.23 0.00 0.00 4.41
634 635 2.824041 CCGGCCCATGTACACTGC 60.824 66.667 0.00 0.61 0.00 4.40
655 657 1.068885 CGCATAAGCCCACGAACAAAA 60.069 47.619 0.00 0.00 37.52 2.44
668 670 2.618839 GTACACGGCGCGCATAAG 59.381 61.111 34.42 22.00 0.00 1.73
669 671 3.248887 CGTACACGGCGCGCATAA 61.249 61.111 34.42 10.23 35.37 1.90
676 678 2.618839 GCTTATGCGTACACGGCG 59.381 61.111 4.80 4.80 40.23 6.46
677 679 1.157870 ATGGCTTATGCGTACACGGC 61.158 55.000 3.67 0.00 40.82 5.68
678 680 1.295792 AATGGCTTATGCGTACACGG 58.704 50.000 3.67 0.00 40.82 4.94
709 711 1.006832 CAACTCCTATTCGGCGGTTG 58.993 55.000 7.21 7.81 38.66 3.77
712 714 1.227556 CCCAACTCCTATTCGGCGG 60.228 63.158 7.21 0.00 0.00 6.13
742 744 1.201987 CGTGTTGTATAAACGGCAGGC 60.202 52.381 0.00 0.00 33.77 4.85
943 952 3.691575 TGGACTTCTCAGATTCTCGAGT 58.308 45.455 13.13 0.00 0.00 4.18
977 986 0.393537 GGGATGTACTGCTGCTGCTT 60.394 55.000 17.00 6.34 40.48 3.91
1809 1827 3.390521 TCGATGAAGGGCGCCACT 61.391 61.111 30.85 20.16 0.00 4.00
2011 2663 3.614092 CATCTGCTAACCAGTTCACCAT 58.386 45.455 0.00 0.00 42.38 3.55
2137 2790 6.128007 CGACAAAAGTAATCCTTGGTATTGCT 60.128 38.462 0.00 0.00 32.32 3.91
2144 2797 7.568199 AATATCCGACAAAAGTAATCCTTGG 57.432 36.000 0.00 0.00 32.32 3.61
2196 2942 4.741342 CAATCTGCATTCAAGAAGTTCCC 58.259 43.478 0.00 0.00 0.00 3.97
2219 2965 7.858382 TCGTTTGAACCACATAAACACATTTAG 59.142 33.333 0.00 0.00 33.78 1.85
2264 3048 9.409949 CGAGTTATTCGTAAATTCATCTTCAAC 57.590 33.333 0.00 0.00 44.27 3.18
2350 3137 3.350219 ACCACCATGGCTTGTAGTAAG 57.650 47.619 13.04 0.00 42.67 2.34
2452 3251 0.679002 ACGGAGGTAGCGAGCACTTA 60.679 55.000 0.00 0.00 0.00 2.24
2494 3294 6.926272 AGAGATGTGAGTAACAGAAACAGAAC 59.074 38.462 0.00 0.00 43.64 3.01
2496 3296 6.265422 TGAGAGATGTGAGTAACAGAAACAGA 59.735 38.462 0.00 0.00 43.64 3.41
2497 3297 6.450545 TGAGAGATGTGAGTAACAGAAACAG 58.549 40.000 0.00 0.00 43.64 3.16
2498 3298 6.405278 TGAGAGATGTGAGTAACAGAAACA 57.595 37.500 0.00 0.00 43.64 2.83
2499 3299 6.701841 TGTTGAGAGATGTGAGTAACAGAAAC 59.298 38.462 0.00 0.00 43.64 2.78
2500 3300 6.816136 TGTTGAGAGATGTGAGTAACAGAAA 58.184 36.000 0.00 0.00 43.64 2.52
2501 3301 6.405278 TGTTGAGAGATGTGAGTAACAGAA 57.595 37.500 0.00 0.00 43.64 3.02
2502 3302 6.216569 GTTGTTGAGAGATGTGAGTAACAGA 58.783 40.000 0.00 0.00 43.64 3.41
2503 3303 5.117745 CGTTGTTGAGAGATGTGAGTAACAG 59.882 44.000 0.00 0.00 43.64 3.16
2504 3304 4.982295 CGTTGTTGAGAGATGTGAGTAACA 59.018 41.667 0.00 0.00 44.79 2.41
2505 3305 5.117287 GTCGTTGTTGAGAGATGTGAGTAAC 59.883 44.000 0.00 0.00 0.00 2.50
2506 3306 5.009710 AGTCGTTGTTGAGAGATGTGAGTAA 59.990 40.000 0.00 0.00 0.00 2.24
2507 3307 4.519350 AGTCGTTGTTGAGAGATGTGAGTA 59.481 41.667 0.00 0.00 0.00 2.59
2508 3308 3.319405 AGTCGTTGTTGAGAGATGTGAGT 59.681 43.478 0.00 0.00 0.00 3.41
2509 3309 3.906998 AGTCGTTGTTGAGAGATGTGAG 58.093 45.455 0.00 0.00 0.00 3.51
2510 3310 4.051237 CAAGTCGTTGTTGAGAGATGTGA 58.949 43.478 0.00 0.00 0.00 3.58
2511 3311 3.363378 GCAAGTCGTTGTTGAGAGATGTG 60.363 47.826 0.00 0.00 35.92 3.21
2512 3312 2.802816 GCAAGTCGTTGTTGAGAGATGT 59.197 45.455 0.00 0.00 35.92 3.06
2513 3313 3.062763 AGCAAGTCGTTGTTGAGAGATG 58.937 45.455 0.00 0.00 35.92 2.90
2514 3314 3.062763 CAGCAAGTCGTTGTTGAGAGAT 58.937 45.455 0.00 0.00 45.22 2.75
2515 3315 2.159099 ACAGCAAGTCGTTGTTGAGAGA 60.159 45.455 9.13 0.00 45.22 3.10
2516 3316 2.033407 CACAGCAAGTCGTTGTTGAGAG 60.033 50.000 9.13 0.00 45.22 3.20
2517 3317 1.933181 CACAGCAAGTCGTTGTTGAGA 59.067 47.619 9.13 0.00 45.22 3.27
2518 3318 1.933181 TCACAGCAAGTCGTTGTTGAG 59.067 47.619 9.13 2.52 45.22 3.02
2519 3319 2.017138 TCACAGCAAGTCGTTGTTGA 57.983 45.000 9.13 0.00 45.22 3.18
2521 3321 2.095853 CAGTTCACAGCAAGTCGTTGTT 59.904 45.455 0.00 0.00 36.86 2.83
2522 3322 1.665679 CAGTTCACAGCAAGTCGTTGT 59.334 47.619 0.00 0.00 40.07 3.32
2523 3323 1.933181 TCAGTTCACAGCAAGTCGTTG 59.067 47.619 0.00 0.00 36.67 4.10
2532 3332 4.376819 CGTGAGAGATTTTCAGTTCACAGC 60.377 45.833 3.72 0.00 35.80 4.40
2555 3355 0.179156 ATTGCAGCGTGCTGTATTGC 60.179 50.000 21.76 9.58 45.31 3.56
2556 3356 1.532505 GGATTGCAGCGTGCTGTATTG 60.533 52.381 21.76 0.00 45.31 1.90
2557 3357 0.734889 GGATTGCAGCGTGCTGTATT 59.265 50.000 21.76 14.25 45.31 1.89
2627 3433 1.762708 CCGACACAATTGGGCCTATT 58.237 50.000 7.85 7.42 0.00 1.73
2662 3468 0.605319 CCAAGCTAAACCCTGCGTCA 60.605 55.000 0.00 0.00 0.00 4.35
2667 3473 2.286365 TCAACCCAAGCTAAACCCTG 57.714 50.000 0.00 0.00 0.00 4.45
2703 3509 3.558418 GGAAGTTACAACGCTTTGACTCA 59.442 43.478 10.27 0.00 36.48 3.41
2706 3512 3.955771 TGGAAGTTACAACGCTTTGAC 57.044 42.857 10.27 0.00 36.48 3.18
2707 3513 3.942748 ACTTGGAAGTTACAACGCTTTGA 59.057 39.130 10.27 0.00 35.21 2.69
2733 3539 6.564984 CGATGTTTACGATAATGCTTGTAACG 59.435 38.462 0.00 0.00 0.00 3.18
2739 3545 3.554324 ACGCGATGTTTACGATAATGCTT 59.446 39.130 15.93 0.00 0.00 3.91
2752 3574 6.701841 ACTTTGAATCTATATGACGCGATGTT 59.298 34.615 15.93 0.00 0.00 2.71
2784 3606 8.147058 CACTAGAAAGGCAGTGTCTATGATAAT 58.853 37.037 0.00 0.00 37.87 1.28
2805 3627 0.743688 AGTCTCGGCAGCATCACTAG 59.256 55.000 0.00 0.00 0.00 2.57
2857 3680 8.656806 CAAGATTCCATATAACTTACCCCAGTA 58.343 37.037 0.00 0.00 0.00 2.74
2860 3683 7.699709 TCAAGATTCCATATAACTTACCCCA 57.300 36.000 0.00 0.00 0.00 4.96
2882 3705 3.417069 ACTCCACGATTTGACCAATCA 57.583 42.857 0.00 0.00 41.51 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.