Multiple sequence alignment - TraesCS6B01G148700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G148700 chr6B 100.000 2703 0 0 1 2703 149550263 149552965 0.000000e+00 4992.0
1 TraesCS6B01G148700 chr6B 92.609 1150 61 10 714 1847 149610673 149611814 0.000000e+00 1631.0
2 TraesCS6B01G148700 chr6B 93.405 652 36 5 714 1362 149576547 149577194 0.000000e+00 959.0
3 TraesCS6B01G148700 chr6B 89.613 491 37 9 1365 1843 149577305 149577793 1.780000e-171 612.0
4 TraesCS6B01G148700 chr6B 91.003 289 24 1 1851 2139 149554205 149553919 3.260000e-104 388.0
5 TraesCS6B01G148700 chr6B 79.381 485 54 22 1852 2294 436502364 436502844 1.570000e-77 300.0
6 TraesCS6B01G148700 chrUn 92.609 1150 61 10 714 1847 78112762 78111621 0.000000e+00 1631.0
7 TraesCS6B01G148700 chr4B 96.301 865 23 4 1847 2703 405329384 405328521 0.000000e+00 1411.0
8 TraesCS6B01G148700 chr4B 97.904 334 7 0 383 716 446203224 446202891 1.800000e-161 579.0
9 TraesCS6B01G148700 chr4B 89.761 293 26 3 1847 2139 405327397 405327685 3.290000e-99 372.0
10 TraesCS6B01G148700 chr6D 89.415 1077 80 19 714 1770 75991204 75992266 0.000000e+00 1327.0
11 TraesCS6B01G148700 chr6D 91.837 833 48 12 891 1703 76042684 76043516 0.000000e+00 1144.0
12 TraesCS6B01G148700 chr6D 93.567 342 16 3 48 384 75990867 75991207 3.110000e-139 505.0
13 TraesCS6B01G148700 chr6D 86.292 445 33 17 1190 1609 76064577 76065018 2.450000e-125 459.0
14 TraesCS6B01G148700 chr6D 92.473 186 7 2 714 895 76038457 76038639 2.670000e-65 259.0
15 TraesCS6B01G148700 chr6D 81.308 214 20 12 1 206 76038032 76038233 3.600000e-34 156.0
16 TraesCS6B01G148700 chr6D 97.297 37 1 0 1809 1845 75992277 75992313 2.250000e-06 63.9
17 TraesCS6B01G148700 chr6A 89.343 1004 69 11 714 1682 91924401 91925401 0.000000e+00 1227.0
18 TraesCS6B01G148700 chr6A 87.755 588 48 5 802 1370 91939320 91939902 0.000000e+00 665.0
19 TraesCS6B01G148700 chr6A 85.455 440 39 15 1188 1609 92054617 92055049 4.130000e-118 435.0
20 TraesCS6B01G148700 chr6A 95.618 251 11 0 1432 1682 91967363 91967613 1.170000e-108 403.0
21 TraesCS6B01G148700 chr6A 85.944 249 34 1 1847 2095 236360478 236360231 5.740000e-67 265.0
22 TraesCS6B01G148700 chr6A 92.222 90 4 2 45 131 91924061 91924150 1.020000e-24 124.0
23 TraesCS6B01G148700 chr2D 86.195 891 68 22 1847 2703 571778741 571777872 0.000000e+00 913.0
24 TraesCS6B01G148700 chr2D 84.337 498 33 23 1844 2303 571773283 571773773 1.910000e-121 446.0
25 TraesCS6B01G148700 chr2D 84.857 350 34 3 2177 2525 567803698 567803367 4.310000e-88 335.0
26 TraesCS6B01G148700 chr2D 88.550 131 13 2 2422 2550 452383177 452383307 1.000000e-34 158.0
27 TraesCS6B01G148700 chr7D 84.824 883 85 19 1842 2700 32339277 32340134 0.000000e+00 843.0
28 TraesCS6B01G148700 chr7D 95.294 85 4 0 2175 2259 32340691 32340607 4.690000e-28 135.0
29 TraesCS6B01G148700 chr7D 87.500 120 7 1 2175 2286 32340875 32340756 6.070000e-27 132.0
30 TraesCS6B01G148700 chr1B 98.806 335 3 1 383 716 57805355 57805021 1.790000e-166 595.0
31 TraesCS6B01G148700 chr1B 98.507 335 5 0 383 717 30713629 30713295 2.320000e-165 592.0
32 TraesCS6B01G148700 chr2B 98.503 334 5 0 383 716 409328066 409327733 8.340000e-165 590.0
33 TraesCS6B01G148700 chr2B 98.494 332 5 0 383 714 95792669 95792338 1.080000e-163 586.0
34 TraesCS6B01G148700 chr5B 98.209 335 5 1 382 716 652624324 652623991 3.880000e-163 584.0
35 TraesCS6B01G148700 chr5B 81.781 483 50 25 1850 2302 381058123 381058597 1.180000e-98 370.0
36 TraesCS6B01G148700 chr5B 93.043 115 7 1 2177 2291 381059411 381059298 1.660000e-37 167.0
37 TraesCS6B01G148700 chr5B 89.313 131 12 2 2422 2550 640999766 640999636 2.150000e-36 163.0
38 TraesCS6B01G148700 chr5B 92.727 55 4 0 2175 2229 629856169 629856115 2.230000e-11 80.5
39 TraesCS6B01G148700 chr4A 98.204 334 6 0 383 716 661815555 661815222 3.880000e-163 584.0
40 TraesCS6B01G148700 chr4A 98.204 334 6 0 383 716 739527030 739526697 3.880000e-163 584.0
41 TraesCS6B01G148700 chr4A 97.910 335 5 2 383 716 733340548 733340881 1.800000e-161 579.0
42 TraesCS6B01G148700 chr3A 80.579 484 55 27 1851 2302 743689950 743690426 1.200000e-88 337.0
43 TraesCS6B01G148700 chr3A 84.585 253 38 1 1843 2095 743691613 743691362 1.610000e-62 250.0
44 TraesCS6B01G148700 chr3A 83.500 200 14 3 2177 2375 525289257 525289438 4.630000e-38 169.0
45 TraesCS6B01G148700 chr3A 83.500 200 14 3 2177 2375 691385892 691386073 4.630000e-38 169.0
46 TraesCS6B01G148700 chr3A 83.854 192 12 3 2177 2367 743691229 743691056 5.990000e-37 165.0
47 TraesCS6B01G148700 chr5A 87.727 220 25 2 2202 2420 71351773 71351555 3.450000e-64 255.0
48 TraesCS6B01G148700 chr1A 76.113 494 63 36 1852 2300 585682854 585682371 9.810000e-50 207.0
49 TraesCS6B01G148700 chr1A 97.368 38 1 0 2265 2302 585681310 585681347 6.250000e-07 65.8
50 TraesCS6B01G148700 chr7B 78.042 378 48 26 1929 2302 631236306 631235960 3.530000e-49 206.0
51 TraesCS6B01G148700 chr7A 90.076 131 11 2 2422 2550 621527887 621528017 4.630000e-38 169.0
52 TraesCS6B01G148700 chr5D 88.550 131 13 2 2422 2550 125199189 125199059 1.000000e-34 158.0
53 TraesCS6B01G148700 chr5D 88.550 131 13 2 2422 2550 373845221 373845351 1.000000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G148700 chr6B 149550263 149552965 2702 False 4992.000000 4992 100.000000 1 2703 1 chr6B.!!$F1 2702
1 TraesCS6B01G148700 chr6B 149610673 149611814 1141 False 1631.000000 1631 92.609000 714 1847 1 chr6B.!!$F2 1133
2 TraesCS6B01G148700 chr6B 149576547 149577793 1246 False 785.500000 959 91.509000 714 1843 2 chr6B.!!$F4 1129
3 TraesCS6B01G148700 chrUn 78111621 78112762 1141 True 1631.000000 1631 92.609000 714 1847 1 chrUn.!!$R1 1133
4 TraesCS6B01G148700 chr4B 405328521 405329384 863 True 1411.000000 1411 96.301000 1847 2703 1 chr4B.!!$R1 856
5 TraesCS6B01G148700 chr6D 76042684 76043516 832 False 1144.000000 1144 91.837000 891 1703 1 chr6D.!!$F1 812
6 TraesCS6B01G148700 chr6D 75990867 75992313 1446 False 631.966667 1327 93.426333 48 1845 3 chr6D.!!$F3 1797
7 TraesCS6B01G148700 chr6D 76038032 76038639 607 False 207.500000 259 86.890500 1 895 2 chr6D.!!$F4 894
8 TraesCS6B01G148700 chr6A 91924061 91925401 1340 False 675.500000 1227 90.782500 45 1682 2 chr6A.!!$F4 1637
9 TraesCS6B01G148700 chr6A 91939320 91939902 582 False 665.000000 665 87.755000 802 1370 1 chr6A.!!$F1 568
10 TraesCS6B01G148700 chr2D 571777872 571778741 869 True 913.000000 913 86.195000 1847 2703 1 chr2D.!!$R2 856
11 TraesCS6B01G148700 chr7D 32339277 32340134 857 False 843.000000 843 84.824000 1842 2700 1 chr7D.!!$F1 858
12 TraesCS6B01G148700 chr3A 743691056 743691613 557 True 207.500000 250 84.219500 1843 2367 2 chr3A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 509 0.037697 TCGGATCTGGTTGTGGTTCG 60.038 55.0 0.62 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2196 0.698818 AAAGACCCTCTTCGGCCAAT 59.301 50.0 2.24 0.0 35.27 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 115 1.657538 GCAGAGTTTCACAGTTTCGCG 60.658 52.381 0.00 0.00 0.00 5.87
147 151 9.650539 TGCATGCATGTTTGTTTAGTAAAATAT 57.349 25.926 26.79 0.00 0.00 1.28
174 186 5.870978 CACTCTTCAAAAATTATGCCCCTTG 59.129 40.000 0.00 0.00 0.00 3.61
314 411 3.832527 TGGGAAGCTAGCAGAAACTTTT 58.167 40.909 18.83 0.00 0.00 2.27
380 482 7.013846 CCTTGGTTAATTAGTTTTGGTCAGTCA 59.986 37.037 0.00 0.00 0.00 3.41
381 483 7.883391 TGGTTAATTAGTTTTGGTCAGTCAA 57.117 32.000 0.00 0.00 0.00 3.18
382 484 8.294954 TGGTTAATTAGTTTTGGTCAGTCAAA 57.705 30.769 0.00 0.00 35.15 2.69
383 485 8.919145 TGGTTAATTAGTTTTGGTCAGTCAAAT 58.081 29.630 0.00 0.00 36.63 2.32
384 486 9.758651 GGTTAATTAGTTTTGGTCAGTCAAATT 57.241 29.630 0.00 0.00 36.63 1.82
387 489 7.713764 ATTAGTTTTGGTCAGTCAAATTTGC 57.286 32.000 13.54 8.67 36.63 3.68
388 490 5.343307 AGTTTTGGTCAGTCAAATTTGCT 57.657 34.783 13.54 10.75 36.63 3.91
389 491 5.351458 AGTTTTGGTCAGTCAAATTTGCTC 58.649 37.500 13.54 8.86 36.63 4.26
390 492 3.624326 TTGGTCAGTCAAATTTGCTCG 57.376 42.857 13.54 4.02 0.00 5.03
391 493 1.879380 TGGTCAGTCAAATTTGCTCGG 59.121 47.619 13.54 9.51 0.00 4.63
392 494 2.151202 GGTCAGTCAAATTTGCTCGGA 58.849 47.619 13.54 11.45 0.00 4.55
393 495 2.749621 GGTCAGTCAAATTTGCTCGGAT 59.250 45.455 13.54 0.00 0.00 4.18
394 496 3.181506 GGTCAGTCAAATTTGCTCGGATC 60.182 47.826 13.54 10.93 0.00 3.36
395 497 3.686726 GTCAGTCAAATTTGCTCGGATCT 59.313 43.478 13.54 0.95 0.00 2.75
396 498 3.686241 TCAGTCAAATTTGCTCGGATCTG 59.314 43.478 13.54 11.39 0.00 2.90
397 499 3.012518 AGTCAAATTTGCTCGGATCTGG 58.987 45.455 13.54 0.00 0.00 3.86
398 500 2.749621 GTCAAATTTGCTCGGATCTGGT 59.250 45.455 13.54 0.00 0.00 4.00
399 501 3.191371 GTCAAATTTGCTCGGATCTGGTT 59.809 43.478 13.54 0.00 0.00 3.67
400 502 3.191162 TCAAATTTGCTCGGATCTGGTTG 59.809 43.478 13.54 0.00 0.00 3.77
401 503 2.496899 ATTTGCTCGGATCTGGTTGT 57.503 45.000 0.62 0.00 0.00 3.32
402 504 1.522668 TTTGCTCGGATCTGGTTGTG 58.477 50.000 0.62 0.00 0.00 3.33
403 505 0.321564 TTGCTCGGATCTGGTTGTGG 60.322 55.000 0.62 0.00 0.00 4.17
404 506 1.296715 GCTCGGATCTGGTTGTGGT 59.703 57.895 0.62 0.00 0.00 4.16
405 507 0.321653 GCTCGGATCTGGTTGTGGTT 60.322 55.000 0.62 0.00 0.00 3.67
406 508 1.726853 CTCGGATCTGGTTGTGGTTC 58.273 55.000 0.62 0.00 0.00 3.62
407 509 0.037697 TCGGATCTGGTTGTGGTTCG 60.038 55.000 0.62 0.00 0.00 3.95
408 510 0.320421 CGGATCTGGTTGTGGTTCGT 60.320 55.000 0.00 0.00 0.00 3.85
409 511 1.439679 GGATCTGGTTGTGGTTCGTC 58.560 55.000 0.00 0.00 0.00 4.20
410 512 1.002087 GGATCTGGTTGTGGTTCGTCT 59.998 52.381 0.00 0.00 0.00 4.18
411 513 2.232941 GGATCTGGTTGTGGTTCGTCTA 59.767 50.000 0.00 0.00 0.00 2.59
412 514 3.118738 GGATCTGGTTGTGGTTCGTCTAT 60.119 47.826 0.00 0.00 0.00 1.98
413 515 3.313012 TCTGGTTGTGGTTCGTCTATG 57.687 47.619 0.00 0.00 0.00 2.23
414 516 2.631062 TCTGGTTGTGGTTCGTCTATGT 59.369 45.455 0.00 0.00 0.00 2.29
415 517 3.070446 TCTGGTTGTGGTTCGTCTATGTT 59.930 43.478 0.00 0.00 0.00 2.71
416 518 3.395639 TGGTTGTGGTTCGTCTATGTTC 58.604 45.455 0.00 0.00 0.00 3.18
417 519 2.410730 GGTTGTGGTTCGTCTATGTTCG 59.589 50.000 0.00 0.00 0.00 3.95
418 520 3.054878 GTTGTGGTTCGTCTATGTTCGT 58.945 45.455 0.00 0.00 0.00 3.85
419 521 2.668250 TGTGGTTCGTCTATGTTCGTG 58.332 47.619 0.00 0.00 0.00 4.35
420 522 2.034939 TGTGGTTCGTCTATGTTCGTGT 59.965 45.455 0.00 0.00 0.00 4.49
421 523 2.407361 GTGGTTCGTCTATGTTCGTGTG 59.593 50.000 0.00 0.00 0.00 3.82
422 524 2.034939 TGGTTCGTCTATGTTCGTGTGT 59.965 45.455 0.00 0.00 0.00 3.72
423 525 2.660236 GGTTCGTCTATGTTCGTGTGTC 59.340 50.000 0.00 0.00 0.00 3.67
424 526 3.562505 GTTCGTCTATGTTCGTGTGTCT 58.437 45.455 0.00 0.00 0.00 3.41
425 527 3.909776 TCGTCTATGTTCGTGTGTCTT 57.090 42.857 0.00 0.00 0.00 3.01
426 528 3.818387 TCGTCTATGTTCGTGTGTCTTC 58.182 45.455 0.00 0.00 0.00 2.87
427 529 3.251487 TCGTCTATGTTCGTGTGTCTTCA 59.749 43.478 0.00 0.00 0.00 3.02
428 530 3.604198 CGTCTATGTTCGTGTGTCTTCAG 59.396 47.826 0.00 0.00 0.00 3.02
429 531 3.921021 GTCTATGTTCGTGTGTCTTCAGG 59.079 47.826 0.00 0.00 0.00 3.86
430 532 2.910688 ATGTTCGTGTGTCTTCAGGT 57.089 45.000 0.00 0.00 0.00 4.00
431 533 2.684001 TGTTCGTGTGTCTTCAGGTT 57.316 45.000 0.00 0.00 0.00 3.50
432 534 2.276201 TGTTCGTGTGTCTTCAGGTTG 58.724 47.619 0.00 0.00 0.00 3.77
433 535 1.597663 GTTCGTGTGTCTTCAGGTTGG 59.402 52.381 0.00 0.00 0.00 3.77
434 536 1.116308 TCGTGTGTCTTCAGGTTGGA 58.884 50.000 0.00 0.00 0.00 3.53
435 537 1.691976 TCGTGTGTCTTCAGGTTGGAT 59.308 47.619 0.00 0.00 0.00 3.41
436 538 2.069273 CGTGTGTCTTCAGGTTGGATC 58.931 52.381 0.00 0.00 0.00 3.36
437 539 2.427506 GTGTGTCTTCAGGTTGGATCC 58.572 52.381 4.20 4.20 0.00 3.36
438 540 2.039084 GTGTGTCTTCAGGTTGGATCCT 59.961 50.000 14.23 0.00 38.51 3.24
439 541 2.711009 TGTGTCTTCAGGTTGGATCCTT 59.289 45.455 14.23 0.00 35.37 3.36
440 542 3.138283 TGTGTCTTCAGGTTGGATCCTTT 59.862 43.478 14.23 0.00 35.37 3.11
441 543 3.753797 GTGTCTTCAGGTTGGATCCTTTC 59.246 47.826 14.23 3.17 35.37 2.62
442 544 3.003480 GTCTTCAGGTTGGATCCTTTCG 58.997 50.000 14.23 0.00 35.37 3.46
443 545 2.903784 TCTTCAGGTTGGATCCTTTCGA 59.096 45.455 14.23 0.30 35.37 3.71
444 546 3.519510 TCTTCAGGTTGGATCCTTTCGAT 59.480 43.478 14.23 0.00 35.37 3.59
445 547 3.543680 TCAGGTTGGATCCTTTCGATC 57.456 47.619 14.23 0.00 45.91 3.69
446 548 3.107601 TCAGGTTGGATCCTTTCGATCT 58.892 45.455 14.23 0.00 45.90 2.75
447 549 4.286707 TCAGGTTGGATCCTTTCGATCTA 58.713 43.478 14.23 0.00 45.90 1.98
448 550 4.099573 TCAGGTTGGATCCTTTCGATCTAC 59.900 45.833 14.23 0.00 45.90 2.59
449 551 3.068307 AGGTTGGATCCTTTCGATCTACG 59.932 47.826 14.23 0.00 45.90 3.51
450 552 3.181478 GGTTGGATCCTTTCGATCTACGT 60.181 47.826 14.23 0.00 45.90 3.57
451 553 4.430908 GTTGGATCCTTTCGATCTACGTT 58.569 43.478 14.23 0.00 45.90 3.99
452 554 5.450965 GGTTGGATCCTTTCGATCTACGTTA 60.451 44.000 14.23 0.00 45.90 3.18
453 555 6.214399 GTTGGATCCTTTCGATCTACGTTAT 58.786 40.000 14.23 0.00 45.90 1.89
454 556 6.401047 TGGATCCTTTCGATCTACGTTATT 57.599 37.500 14.23 0.00 45.90 1.40
455 557 7.514784 TGGATCCTTTCGATCTACGTTATTA 57.485 36.000 14.23 0.00 45.90 0.98
456 558 8.118976 TGGATCCTTTCGATCTACGTTATTAT 57.881 34.615 14.23 0.00 45.90 1.28
457 559 8.582437 TGGATCCTTTCGATCTACGTTATTATT 58.418 33.333 14.23 0.00 45.90 1.40
458 560 9.074443 GGATCCTTTCGATCTACGTTATTATTC 57.926 37.037 3.84 0.00 45.90 1.75
459 561 9.622004 GATCCTTTCGATCTACGTTATTATTCA 57.378 33.333 0.00 0.00 43.65 2.57
461 563 9.622004 TCCTTTCGATCTACGTTATTATTCATC 57.378 33.333 0.00 0.00 43.13 2.92
462 564 9.406828 CCTTTCGATCTACGTTATTATTCATCA 57.593 33.333 0.00 0.00 43.13 3.07
464 566 8.449085 TTCGATCTACGTTATTATTCATCAGC 57.551 34.615 0.00 0.00 43.13 4.26
465 567 6.741358 TCGATCTACGTTATTATTCATCAGCG 59.259 38.462 0.00 0.00 43.13 5.18
466 568 6.021390 CGATCTACGTTATTATTCATCAGCGG 60.021 42.308 0.00 0.00 37.22 5.52
467 569 4.921515 TCTACGTTATTATTCATCAGCGGC 59.078 41.667 0.00 0.00 0.00 6.53
468 570 2.475111 ACGTTATTATTCATCAGCGGCG 59.525 45.455 0.51 0.51 0.00 6.46
469 571 2.159841 CGTTATTATTCATCAGCGGCGG 60.160 50.000 9.78 0.00 0.00 6.13
470 572 2.806244 GTTATTATTCATCAGCGGCGGT 59.194 45.455 5.44 5.44 0.00 5.68
471 573 1.967319 ATTATTCATCAGCGGCGGTT 58.033 45.000 9.73 0.00 0.00 4.44
472 574 1.013596 TTATTCATCAGCGGCGGTTG 58.986 50.000 9.73 6.66 0.00 3.77
473 575 1.436195 TATTCATCAGCGGCGGTTGC 61.436 55.000 9.73 0.00 41.71 4.17
474 576 3.776680 TATTCATCAGCGGCGGTTGCT 62.777 52.381 9.73 0.00 45.31 3.91
481 583 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
482 584 2.594592 GGCGGTTGCTGTTCTGGT 60.595 61.111 0.00 0.00 42.25 4.00
483 585 2.639286 GCGGTTGCTGTTCTGGTG 59.361 61.111 0.00 0.00 38.39 4.17
484 586 2.639286 CGGTTGCTGTTCTGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
485 587 2.639286 GGTTGCTGTTCTGGTGCG 59.361 61.111 0.00 0.00 0.00 5.34
486 588 2.050985 GTTGCTGTTCTGGTGCGC 60.051 61.111 0.00 0.00 0.00 6.09
487 589 2.203195 TTGCTGTTCTGGTGCGCT 60.203 55.556 9.73 0.00 0.00 5.92
488 590 2.545596 TTGCTGTTCTGGTGCGCTG 61.546 57.895 9.73 0.00 0.00 5.18
489 591 3.730761 GCTGTTCTGGTGCGCTGG 61.731 66.667 9.73 0.00 0.00 4.85
490 592 2.281070 CTGTTCTGGTGCGCTGGT 60.281 61.111 9.73 0.00 0.00 4.00
491 593 2.280797 TGTTCTGGTGCGCTGGTC 60.281 61.111 9.73 0.00 0.00 4.02
492 594 3.050275 GTTCTGGTGCGCTGGTCC 61.050 66.667 9.73 6.75 0.00 4.46
493 595 3.241530 TTCTGGTGCGCTGGTCCT 61.242 61.111 9.73 0.00 0.00 3.85
494 596 1.911269 TTCTGGTGCGCTGGTCCTA 60.911 57.895 9.73 0.00 0.00 2.94
495 597 2.125512 CTGGTGCGCTGGTCCTAC 60.126 66.667 9.73 0.00 0.00 3.18
496 598 3.989698 CTGGTGCGCTGGTCCTACG 62.990 68.421 9.73 0.30 0.00 3.51
497 599 4.814294 GGTGCGCTGGTCCTACGG 62.814 72.222 9.73 0.00 0.00 4.02
498 600 4.814294 GTGCGCTGGTCCTACGGG 62.814 72.222 9.73 0.00 0.00 5.28
506 608 2.820261 GTCCTACGGGGCCTTAGC 59.180 66.667 0.84 0.00 38.76 3.09
507 609 2.062177 GTCCTACGGGGCCTTAGCA 61.062 63.158 0.84 0.00 42.56 3.49
508 610 2.062177 TCCTACGGGGCCTTAGCAC 61.062 63.158 0.84 0.00 43.97 4.40
509 611 2.106332 CTACGGGGCCTTAGCACG 59.894 66.667 0.84 0.00 46.55 5.34
510 612 2.362760 TACGGGGCCTTAGCACGA 60.363 61.111 0.84 0.00 46.55 4.35
511 613 2.624437 CTACGGGGCCTTAGCACGAC 62.624 65.000 0.84 0.00 46.55 4.34
513 615 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
514 616 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
515 617 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
516 618 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
517 619 0.669625 GGCCTTAGCACGACGACTTT 60.670 55.000 0.00 0.00 42.56 2.66
518 620 0.714439 GCCTTAGCACGACGACTTTC 59.286 55.000 0.00 0.00 39.53 2.62
519 621 1.347320 CCTTAGCACGACGACTTTCC 58.653 55.000 0.00 0.00 0.00 3.13
520 622 0.982673 CTTAGCACGACGACTTTCCG 59.017 55.000 0.00 0.00 0.00 4.30
521 623 0.592637 TTAGCACGACGACTTTCCGA 59.407 50.000 0.00 0.00 0.00 4.55
522 624 0.110056 TAGCACGACGACTTTCCGAC 60.110 55.000 0.00 0.00 0.00 4.79
523 625 1.371389 GCACGACGACTTTCCGACT 60.371 57.895 0.00 0.00 0.00 4.18
524 626 1.606350 GCACGACGACTTTCCGACTG 61.606 60.000 0.00 0.00 0.00 3.51
525 627 0.317603 CACGACGACTTTCCGACTGT 60.318 55.000 0.00 0.00 0.00 3.55
526 628 0.040603 ACGACGACTTTCCGACTGTC 60.041 55.000 0.00 0.00 0.00 3.51
527 629 0.237761 CGACGACTTTCCGACTGTCT 59.762 55.000 6.21 0.00 0.00 3.41
528 630 1.462283 CGACGACTTTCCGACTGTCTA 59.538 52.381 6.21 0.00 0.00 2.59
529 631 2.724228 CGACGACTTTCCGACTGTCTAC 60.724 54.545 6.21 0.00 0.00 2.59
530 632 2.483491 GACGACTTTCCGACTGTCTACT 59.517 50.000 6.21 0.00 0.00 2.57
531 633 3.668447 ACGACTTTCCGACTGTCTACTA 58.332 45.455 6.21 0.00 0.00 1.82
532 634 3.434984 ACGACTTTCCGACTGTCTACTAC 59.565 47.826 6.21 0.00 0.00 2.73
533 635 3.434641 CGACTTTCCGACTGTCTACTACA 59.565 47.826 6.21 0.00 36.42 2.74
534 636 4.083643 CGACTTTCCGACTGTCTACTACAA 60.084 45.833 6.21 0.00 37.74 2.41
535 637 5.118642 ACTTTCCGACTGTCTACTACAAC 57.881 43.478 6.21 0.00 37.74 3.32
536 638 4.581824 ACTTTCCGACTGTCTACTACAACA 59.418 41.667 6.21 0.00 37.74 3.33
537 639 5.068198 ACTTTCCGACTGTCTACTACAACAA 59.932 40.000 6.21 0.00 37.74 2.83
538 640 4.761235 TCCGACTGTCTACTACAACAAG 57.239 45.455 6.21 0.00 37.74 3.16
539 641 4.139786 TCCGACTGTCTACTACAACAAGT 58.860 43.478 6.21 0.00 37.74 3.16
540 642 4.581824 TCCGACTGTCTACTACAACAAGTT 59.418 41.667 6.21 0.00 37.74 2.66
541 643 4.680110 CCGACTGTCTACTACAACAAGTTG 59.320 45.833 11.16 11.16 45.58 3.16
550 652 2.404083 CAACAAGTTGTGCCCGACT 58.596 52.632 9.79 0.00 36.86 4.18
551 653 0.307760 CAACAAGTTGTGCCCGACTC 59.692 55.000 9.79 0.00 34.00 3.36
552 654 0.818040 AACAAGTTGTGCCCGACTCC 60.818 55.000 9.79 0.00 34.00 3.85
553 655 2.030562 AAGTTGTGCCCGACTCCG 59.969 61.111 0.00 0.00 34.00 4.63
570 672 3.866582 GGCGAGGGAGGGGTGATG 61.867 72.222 0.00 0.00 0.00 3.07
571 673 2.764128 GCGAGGGAGGGGTGATGA 60.764 66.667 0.00 0.00 0.00 2.92
572 674 3.095347 GCGAGGGAGGGGTGATGAC 62.095 68.421 0.00 0.00 0.00 3.06
573 675 2.786495 CGAGGGAGGGGTGATGACG 61.786 68.421 0.00 0.00 0.00 4.35
574 676 2.365635 AGGGAGGGGTGATGACGG 60.366 66.667 0.00 0.00 0.00 4.79
575 677 4.176752 GGGAGGGGTGATGACGGC 62.177 72.222 0.00 0.00 0.00 5.68
576 678 4.530857 GGAGGGGTGATGACGGCG 62.531 72.222 4.80 4.80 0.00 6.46
577 679 4.530857 GAGGGGTGATGACGGCGG 62.531 72.222 13.24 0.00 0.00 6.13
598 700 3.169198 GCCTTCGGCTCGTTTCAG 58.831 61.111 0.00 0.00 46.69 3.02
599 701 1.668151 GCCTTCGGCTCGTTTCAGT 60.668 57.895 0.00 0.00 46.69 3.41
600 702 1.901650 GCCTTCGGCTCGTTTCAGTG 61.902 60.000 0.00 0.00 46.69 3.66
601 703 0.319555 CCTTCGGCTCGTTTCAGTGA 60.320 55.000 0.00 0.00 0.00 3.41
602 704 1.673033 CCTTCGGCTCGTTTCAGTGAT 60.673 52.381 0.00 0.00 0.00 3.06
603 705 2.069273 CTTCGGCTCGTTTCAGTGATT 58.931 47.619 0.00 0.00 0.00 2.57
604 706 1.428448 TCGGCTCGTTTCAGTGATTG 58.572 50.000 0.00 0.00 0.00 2.67
605 707 1.148310 CGGCTCGTTTCAGTGATTGT 58.852 50.000 0.00 0.00 0.00 2.71
606 708 2.029739 TCGGCTCGTTTCAGTGATTGTA 60.030 45.455 0.00 0.00 0.00 2.41
607 709 2.345641 CGGCTCGTTTCAGTGATTGTAG 59.654 50.000 0.00 0.00 0.00 2.74
608 710 3.326747 GGCTCGTTTCAGTGATTGTAGT 58.673 45.455 0.00 0.00 0.00 2.73
609 711 3.368236 GGCTCGTTTCAGTGATTGTAGTC 59.632 47.826 0.00 0.00 0.00 2.59
610 712 3.059570 GCTCGTTTCAGTGATTGTAGTCG 59.940 47.826 0.00 0.00 0.00 4.18
611 713 4.227538 CTCGTTTCAGTGATTGTAGTCGT 58.772 43.478 0.00 0.00 0.00 4.34
612 714 4.224433 TCGTTTCAGTGATTGTAGTCGTC 58.776 43.478 0.00 0.00 0.00 4.20
613 715 3.057739 CGTTTCAGTGATTGTAGTCGTCG 59.942 47.826 0.00 0.00 0.00 5.12
614 716 2.257974 TCAGTGATTGTAGTCGTCGC 57.742 50.000 0.00 0.00 0.00 5.19
615 717 1.810755 TCAGTGATTGTAGTCGTCGCT 59.189 47.619 0.00 0.00 33.30 4.93
616 718 3.004862 TCAGTGATTGTAGTCGTCGCTA 58.995 45.455 0.00 0.00 31.96 4.26
617 719 3.063588 TCAGTGATTGTAGTCGTCGCTAG 59.936 47.826 0.00 0.00 31.96 3.42
618 720 2.355132 AGTGATTGTAGTCGTCGCTAGG 59.645 50.000 0.00 0.00 31.46 3.02
619 721 2.097142 GTGATTGTAGTCGTCGCTAGGT 59.903 50.000 0.00 0.00 0.00 3.08
620 722 2.096980 TGATTGTAGTCGTCGCTAGGTG 59.903 50.000 0.00 0.00 0.00 4.00
621 723 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
622 724 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
623 725 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
624 726 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
625 727 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
626 728 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
627 729 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
628 730 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
629 731 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
630 732 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
631 733 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
632 734 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
633 735 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
634 736 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
635 737 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
636 738 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
637 739 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
638 740 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
639 741 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
640 742 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
641 743 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
642 744 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
643 745 5.365605 TGGTCTACGGATCTGGATGTAATTT 59.634 40.000 6.47 0.00 0.00 1.82
644 746 6.126883 TGGTCTACGGATCTGGATGTAATTTT 60.127 38.462 6.47 0.00 0.00 1.82
645 747 6.766467 GGTCTACGGATCTGGATGTAATTTTT 59.234 38.462 6.47 0.00 0.00 1.94
646 748 7.929785 GGTCTACGGATCTGGATGTAATTTTTA 59.070 37.037 6.47 0.00 0.00 1.52
647 749 9.490379 GTCTACGGATCTGGATGTAATTTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
672 774 5.600908 TTTCTAGTGTTCGTTGTAATGCC 57.399 39.130 0.00 0.00 0.00 4.40
673 775 3.247442 TCTAGTGTTCGTTGTAATGCCG 58.753 45.455 0.00 0.00 0.00 5.69
674 776 1.873698 AGTGTTCGTTGTAATGCCGT 58.126 45.000 0.00 0.00 0.00 5.68
675 777 1.529438 AGTGTTCGTTGTAATGCCGTG 59.471 47.619 0.00 0.00 0.00 4.94
676 778 1.527736 GTGTTCGTTGTAATGCCGTGA 59.472 47.619 0.00 0.00 0.00 4.35
677 779 2.158841 GTGTTCGTTGTAATGCCGTGAT 59.841 45.455 0.00 0.00 0.00 3.06
678 780 2.158645 TGTTCGTTGTAATGCCGTGATG 59.841 45.455 0.00 0.00 0.00 3.07
679 781 1.364721 TCGTTGTAATGCCGTGATGG 58.635 50.000 0.00 0.00 42.50 3.51
680 782 1.066787 TCGTTGTAATGCCGTGATGGA 60.067 47.619 0.00 0.00 42.00 3.41
681 783 1.735018 CGTTGTAATGCCGTGATGGAA 59.265 47.619 0.00 0.00 42.00 3.53
682 784 2.223021 CGTTGTAATGCCGTGATGGAAG 60.223 50.000 0.00 0.00 42.00 3.46
683 785 3.006940 GTTGTAATGCCGTGATGGAAGA 58.993 45.455 0.00 0.00 42.00 2.87
684 786 3.558931 TGTAATGCCGTGATGGAAGAT 57.441 42.857 0.00 0.00 42.00 2.40
685 787 3.205338 TGTAATGCCGTGATGGAAGATG 58.795 45.455 0.00 0.00 42.00 2.90
686 788 2.715749 AATGCCGTGATGGAAGATGA 57.284 45.000 0.00 0.00 42.00 2.92
687 789 2.715749 ATGCCGTGATGGAAGATGAA 57.284 45.000 0.00 0.00 42.00 2.57
688 790 2.715749 TGCCGTGATGGAAGATGAAT 57.284 45.000 0.00 0.00 42.00 2.57
689 791 3.836365 TGCCGTGATGGAAGATGAATA 57.164 42.857 0.00 0.00 42.00 1.75
690 792 3.732212 TGCCGTGATGGAAGATGAATAG 58.268 45.455 0.00 0.00 42.00 1.73
691 793 3.387699 TGCCGTGATGGAAGATGAATAGA 59.612 43.478 0.00 0.00 42.00 1.98
692 794 4.040829 TGCCGTGATGGAAGATGAATAGAT 59.959 41.667 0.00 0.00 42.00 1.98
693 795 4.999950 GCCGTGATGGAAGATGAATAGATT 59.000 41.667 0.00 0.00 42.00 2.40
694 796 5.106791 GCCGTGATGGAAGATGAATAGATTG 60.107 44.000 0.00 0.00 42.00 2.67
695 797 6.226052 CCGTGATGGAAGATGAATAGATTGA 58.774 40.000 0.00 0.00 42.00 2.57
696 798 6.707608 CCGTGATGGAAGATGAATAGATTGAA 59.292 38.462 0.00 0.00 42.00 2.69
697 799 7.227314 CCGTGATGGAAGATGAATAGATTGAAA 59.773 37.037 0.00 0.00 42.00 2.69
698 800 8.281194 CGTGATGGAAGATGAATAGATTGAAAG 58.719 37.037 0.00 0.00 0.00 2.62
699 801 9.118300 GTGATGGAAGATGAATAGATTGAAAGT 57.882 33.333 0.00 0.00 0.00 2.66
700 802 9.690913 TGATGGAAGATGAATAGATTGAAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
707 809 9.658799 AGATGAATAGATTGAAAGTTTTCTCGA 57.341 29.630 6.21 0.00 38.02 4.04
958 1067 2.478709 GCGGCATACCTCGATATCTCTG 60.479 54.545 0.34 0.00 0.00 3.35
1007 1119 6.817765 TGATTTTGGTTCCAAGATGTCTAC 57.182 37.500 11.45 0.00 0.00 2.59
1009 1121 3.328382 TTGGTTCCAAGATGTCTACCG 57.672 47.619 0.00 0.00 0.00 4.02
1029 1141 0.320050 TGACGACCATAAGCAGCACA 59.680 50.000 0.00 0.00 0.00 4.57
1053 1165 2.283529 GGAGTCGCTGGAGGTGGAA 61.284 63.158 0.00 0.00 0.00 3.53
1158 1288 3.808174 CGGGAAATATCGGAAGGAAGAAC 59.192 47.826 0.00 0.00 0.00 3.01
1242 1372 3.248171 GGCAGCGACATCGACGAC 61.248 66.667 5.26 0.00 43.02 4.34
1332 1462 1.374252 GCTGGAGAAAAGCGTCCGA 60.374 57.895 0.00 0.00 35.37 4.55
1371 1596 3.306780 CCCATGTACGTCCATATCTTCCC 60.307 52.174 0.00 0.00 0.00 3.97
1381 1620 5.625150 GTCCATATCTTCCCTAAGTGCAAT 58.375 41.667 0.00 0.00 34.13 3.56
1644 1889 4.988598 CGGCGGTGCACAGGACTT 62.989 66.667 20.43 0.00 0.00 3.01
1649 1894 1.227556 GGTGCACAGGACTTGACGT 60.228 57.895 20.43 0.00 0.00 4.34
1748 1996 1.452953 CGCCGCCATAGGACTAGTCA 61.453 60.000 23.91 5.26 0.00 3.41
1847 2101 2.276732 AGGCATGACCGAAATATGGG 57.723 50.000 0.00 0.00 46.52 4.00
1848 2102 1.774254 AGGCATGACCGAAATATGGGA 59.226 47.619 0.00 0.00 46.52 4.37
1849 2103 2.376518 AGGCATGACCGAAATATGGGAT 59.623 45.455 0.00 0.00 46.52 3.85
1850 2104 3.157087 GGCATGACCGAAATATGGGATT 58.843 45.455 0.00 0.00 0.00 3.01
1851 2105 3.573967 GGCATGACCGAAATATGGGATTT 59.426 43.478 0.00 0.00 0.00 2.17
1942 2196 0.469331 ATGATCCCGTCGGCCTTCTA 60.469 55.000 5.50 0.00 0.00 2.10
2058 2313 0.036388 CTTCGGCTTACTCTTGGCCA 60.036 55.000 0.00 0.00 45.50 5.36
2184 2500 3.059393 CAGTATGGACTTACATGCATGCG 60.059 47.826 26.53 16.74 37.93 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.432110 TCTCACTTCTTTTATGCGCATAATTA 57.568 30.769 36.01 26.46 33.71 1.40
34 35 7.320443 TCTCACTTCTTTTATGCGCATAATT 57.680 32.000 36.01 14.85 33.71 1.40
35 36 6.512415 GCTCTCACTTCTTTTATGCGCATAAT 60.512 38.462 36.01 21.43 33.71 1.28
36 37 5.220662 GCTCTCACTTCTTTTATGCGCATAA 60.221 40.000 33.26 33.26 0.00 1.90
37 38 4.271049 GCTCTCACTTCTTTTATGCGCATA 59.729 41.667 25.78 25.78 0.00 3.14
38 39 3.064545 GCTCTCACTTCTTTTATGCGCAT 59.935 43.478 28.23 28.23 0.00 4.73
39 40 2.416547 GCTCTCACTTCTTTTATGCGCA 59.583 45.455 14.96 14.96 0.00 6.09
40 41 2.416547 TGCTCTCACTTCTTTTATGCGC 59.583 45.455 0.00 0.00 0.00 6.09
41 42 4.436584 CCTTGCTCTCACTTCTTTTATGCG 60.437 45.833 0.00 0.00 0.00 4.73
42 43 4.142513 CCCTTGCTCTCACTTCTTTTATGC 60.143 45.833 0.00 0.00 0.00 3.14
43 44 4.397417 CCCCTTGCTCTCACTTCTTTTATG 59.603 45.833 0.00 0.00 0.00 1.90
47 48 2.057922 TCCCCTTGCTCTCACTTCTTT 58.942 47.619 0.00 0.00 0.00 2.52
50 51 2.039084 TCTTTCCCCTTGCTCTCACTTC 59.961 50.000 0.00 0.00 0.00 3.01
111 115 3.752796 ATGCATGCATGGCAGTTTC 57.247 47.368 31.74 9.80 45.68 2.78
147 151 6.723977 AGGGGCATAATTTTTGAAGAGTGTAA 59.276 34.615 0.00 0.00 0.00 2.41
148 152 6.252995 AGGGGCATAATTTTTGAAGAGTGTA 58.747 36.000 0.00 0.00 0.00 2.90
291 388 2.996631 AGTTTCTGCTAGCTTCCCATG 58.003 47.619 17.23 0.00 0.00 3.66
294 391 4.855715 AAAAAGTTTCTGCTAGCTTCCC 57.144 40.909 17.23 0.13 0.00 3.97
353 452 7.064229 ACTGACCAAAACTAATTAACCAAGGA 58.936 34.615 0.00 0.00 0.00 3.36
373 475 3.686726 AGATCCGAGCAAATTTGACTGAC 59.313 43.478 22.31 3.56 0.00 3.51
380 482 3.057315 CACAACCAGATCCGAGCAAATTT 60.057 43.478 0.00 0.00 0.00 1.82
381 483 2.489329 CACAACCAGATCCGAGCAAATT 59.511 45.455 0.00 0.00 0.00 1.82
382 484 2.086869 CACAACCAGATCCGAGCAAAT 58.913 47.619 0.00 0.00 0.00 2.32
383 485 1.522668 CACAACCAGATCCGAGCAAA 58.477 50.000 0.00 0.00 0.00 3.68
384 486 0.321564 CCACAACCAGATCCGAGCAA 60.322 55.000 0.00 0.00 0.00 3.91
385 487 1.296392 CCACAACCAGATCCGAGCA 59.704 57.895 0.00 0.00 0.00 4.26
386 488 0.321653 AACCACAACCAGATCCGAGC 60.322 55.000 0.00 0.00 0.00 5.03
387 489 1.726853 GAACCACAACCAGATCCGAG 58.273 55.000 0.00 0.00 0.00 4.63
388 490 0.037697 CGAACCACAACCAGATCCGA 60.038 55.000 0.00 0.00 0.00 4.55
389 491 0.320421 ACGAACCACAACCAGATCCG 60.320 55.000 0.00 0.00 0.00 4.18
390 492 1.002087 AGACGAACCACAACCAGATCC 59.998 52.381 0.00 0.00 0.00 3.36
391 493 2.457366 AGACGAACCACAACCAGATC 57.543 50.000 0.00 0.00 0.00 2.75
392 494 3.260884 ACATAGACGAACCACAACCAGAT 59.739 43.478 0.00 0.00 0.00 2.90
393 495 2.631062 ACATAGACGAACCACAACCAGA 59.369 45.455 0.00 0.00 0.00 3.86
394 496 3.040147 ACATAGACGAACCACAACCAG 57.960 47.619 0.00 0.00 0.00 4.00
395 497 3.395639 GAACATAGACGAACCACAACCA 58.604 45.455 0.00 0.00 0.00 3.67
396 498 2.410730 CGAACATAGACGAACCACAACC 59.589 50.000 0.00 0.00 0.00 3.77
397 499 3.054878 ACGAACATAGACGAACCACAAC 58.945 45.455 0.00 0.00 0.00 3.32
398 500 3.054166 CACGAACATAGACGAACCACAA 58.946 45.455 0.00 0.00 0.00 3.33
399 501 2.034939 ACACGAACATAGACGAACCACA 59.965 45.455 0.00 0.00 0.00 4.17
400 502 2.407361 CACACGAACATAGACGAACCAC 59.593 50.000 0.00 0.00 0.00 4.16
401 503 2.034939 ACACACGAACATAGACGAACCA 59.965 45.455 0.00 0.00 0.00 3.67
402 504 2.660236 GACACACGAACATAGACGAACC 59.340 50.000 0.00 0.00 0.00 3.62
403 505 3.562505 AGACACACGAACATAGACGAAC 58.437 45.455 0.00 0.00 0.00 3.95
404 506 3.909776 AGACACACGAACATAGACGAA 57.090 42.857 0.00 0.00 0.00 3.85
405 507 3.251487 TGAAGACACACGAACATAGACGA 59.749 43.478 0.00 0.00 0.00 4.20
406 508 3.561503 TGAAGACACACGAACATAGACG 58.438 45.455 0.00 0.00 0.00 4.18
407 509 3.921021 CCTGAAGACACACGAACATAGAC 59.079 47.826 0.00 0.00 0.00 2.59
408 510 3.572682 ACCTGAAGACACACGAACATAGA 59.427 43.478 0.00 0.00 0.00 1.98
409 511 3.914312 ACCTGAAGACACACGAACATAG 58.086 45.455 0.00 0.00 0.00 2.23
410 512 4.055360 CAACCTGAAGACACACGAACATA 58.945 43.478 0.00 0.00 0.00 2.29
411 513 2.872245 CAACCTGAAGACACACGAACAT 59.128 45.455 0.00 0.00 0.00 2.71
412 514 2.276201 CAACCTGAAGACACACGAACA 58.724 47.619 0.00 0.00 0.00 3.18
413 515 1.597663 CCAACCTGAAGACACACGAAC 59.402 52.381 0.00 0.00 0.00 3.95
414 516 1.483004 TCCAACCTGAAGACACACGAA 59.517 47.619 0.00 0.00 0.00 3.85
415 517 1.116308 TCCAACCTGAAGACACACGA 58.884 50.000 0.00 0.00 0.00 4.35
416 518 2.069273 GATCCAACCTGAAGACACACG 58.931 52.381 0.00 0.00 0.00 4.49
417 519 2.039084 AGGATCCAACCTGAAGACACAC 59.961 50.000 15.82 0.00 39.01 3.82
418 520 2.338809 AGGATCCAACCTGAAGACACA 58.661 47.619 15.82 0.00 39.01 3.72
419 521 3.425162 AAGGATCCAACCTGAAGACAC 57.575 47.619 15.82 0.00 40.49 3.67
420 522 3.557054 CGAAAGGATCCAACCTGAAGACA 60.557 47.826 15.82 0.00 40.49 3.41
421 523 3.003480 CGAAAGGATCCAACCTGAAGAC 58.997 50.000 15.82 0.00 40.49 3.01
422 524 2.903784 TCGAAAGGATCCAACCTGAAGA 59.096 45.455 15.82 0.00 40.49 2.87
423 525 3.334583 TCGAAAGGATCCAACCTGAAG 57.665 47.619 15.82 0.00 40.49 3.02
424 526 3.873910 GATCGAAAGGATCCAACCTGAA 58.126 45.455 15.82 0.00 44.86 3.02
425 527 3.543680 GATCGAAAGGATCCAACCTGA 57.456 47.619 15.82 5.36 44.86 3.86
435 537 9.622004 GATGAATAATAACGTAGATCGAAAGGA 57.378 33.333 0.00 0.00 42.86 3.36
436 538 9.406828 TGATGAATAATAACGTAGATCGAAAGG 57.593 33.333 0.00 0.00 42.86 3.11
438 540 8.912658 GCTGATGAATAATAACGTAGATCGAAA 58.087 33.333 0.00 0.00 42.86 3.46
439 541 7.270579 CGCTGATGAATAATAACGTAGATCGAA 59.729 37.037 0.00 0.00 42.86 3.71
440 542 6.741358 CGCTGATGAATAATAACGTAGATCGA 59.259 38.462 0.00 0.00 42.86 3.59
441 543 6.021390 CCGCTGATGAATAATAACGTAGATCG 60.021 42.308 0.00 0.00 46.00 3.69
442 544 6.237595 GCCGCTGATGAATAATAACGTAGATC 60.238 42.308 0.00 0.00 0.00 2.75
443 545 5.577164 GCCGCTGATGAATAATAACGTAGAT 59.423 40.000 0.00 0.00 0.00 1.98
444 546 4.921515 GCCGCTGATGAATAATAACGTAGA 59.078 41.667 0.00 0.00 0.00 2.59
445 547 4.201494 CGCCGCTGATGAATAATAACGTAG 60.201 45.833 0.00 0.00 0.00 3.51
446 548 3.671459 CGCCGCTGATGAATAATAACGTA 59.329 43.478 0.00 0.00 0.00 3.57
447 549 2.475111 CGCCGCTGATGAATAATAACGT 59.525 45.455 0.00 0.00 0.00 3.99
448 550 2.159841 CCGCCGCTGATGAATAATAACG 60.160 50.000 0.00 0.00 0.00 3.18
449 551 2.806244 ACCGCCGCTGATGAATAATAAC 59.194 45.455 0.00 0.00 0.00 1.89
450 552 3.120321 ACCGCCGCTGATGAATAATAA 57.880 42.857 0.00 0.00 0.00 1.40
451 553 2.805671 CAACCGCCGCTGATGAATAATA 59.194 45.455 0.00 0.00 0.00 0.98
452 554 1.603802 CAACCGCCGCTGATGAATAAT 59.396 47.619 0.00 0.00 0.00 1.28
453 555 1.013596 CAACCGCCGCTGATGAATAA 58.986 50.000 0.00 0.00 0.00 1.40
454 556 1.436195 GCAACCGCCGCTGATGAATA 61.436 55.000 0.00 0.00 0.00 1.75
455 557 2.764314 GCAACCGCCGCTGATGAAT 61.764 57.895 0.00 0.00 0.00 2.57
456 558 3.430862 GCAACCGCCGCTGATGAA 61.431 61.111 0.00 0.00 0.00 2.57
457 559 4.393155 AGCAACCGCCGCTGATGA 62.393 61.111 0.00 0.00 38.60 2.92
462 564 4.626081 AGAACAGCAACCGCCGCT 62.626 61.111 0.00 0.00 41.47 5.52
463 565 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
464 566 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
465 567 2.594592 ACCAGAACAGCAACCGCC 60.595 61.111 0.00 0.00 39.83 6.13
466 568 2.639286 CACCAGAACAGCAACCGC 59.361 61.111 0.00 0.00 38.99 5.68
467 569 2.639286 GCACCAGAACAGCAACCG 59.361 61.111 0.00 0.00 0.00 4.44
468 570 2.639286 CGCACCAGAACAGCAACC 59.361 61.111 0.00 0.00 0.00 3.77
469 571 2.050985 GCGCACCAGAACAGCAAC 60.051 61.111 0.30 0.00 0.00 4.17
470 572 2.203195 AGCGCACCAGAACAGCAA 60.203 55.556 11.47 0.00 0.00 3.91
471 573 2.974148 CAGCGCACCAGAACAGCA 60.974 61.111 11.47 0.00 0.00 4.41
472 574 3.730761 CCAGCGCACCAGAACAGC 61.731 66.667 11.47 0.00 0.00 4.40
473 575 2.281070 ACCAGCGCACCAGAACAG 60.281 61.111 11.47 0.00 0.00 3.16
474 576 2.280797 GACCAGCGCACCAGAACA 60.281 61.111 11.47 0.00 0.00 3.18
475 577 2.167398 TAGGACCAGCGCACCAGAAC 62.167 60.000 11.47 0.00 0.00 3.01
476 578 1.911269 TAGGACCAGCGCACCAGAA 60.911 57.895 11.47 0.00 0.00 3.02
477 579 2.283604 TAGGACCAGCGCACCAGA 60.284 61.111 11.47 0.00 0.00 3.86
478 580 2.125512 GTAGGACCAGCGCACCAG 60.126 66.667 11.47 0.00 0.00 4.00
479 581 4.063967 CGTAGGACCAGCGCACCA 62.064 66.667 11.47 0.00 0.00 4.17
490 592 2.062177 GTGCTAAGGCCCCGTAGGA 61.062 63.158 0.00 0.00 45.58 2.94
491 593 2.504519 GTGCTAAGGCCCCGTAGG 59.495 66.667 0.00 0.00 41.97 3.18
492 594 2.106332 CGTGCTAAGGCCCCGTAG 59.894 66.667 0.00 0.00 37.74 3.51
493 595 2.362760 TCGTGCTAAGGCCCCGTA 60.363 61.111 0.00 0.00 37.74 4.02
494 596 4.078516 GTCGTGCTAAGGCCCCGT 62.079 66.667 0.00 0.00 37.74 5.28
496 598 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
497 599 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
498 600 0.669625 AAAGTCGTCGTGCTAAGGCC 60.670 55.000 0.00 0.00 37.74 5.19
499 601 0.714439 GAAAGTCGTCGTGCTAAGGC 59.286 55.000 0.00 0.00 39.26 4.35
500 602 1.347320 GGAAAGTCGTCGTGCTAAGG 58.653 55.000 0.00 0.00 0.00 2.69
501 603 0.982673 CGGAAAGTCGTCGTGCTAAG 59.017 55.000 0.00 0.00 0.00 2.18
502 604 0.592637 TCGGAAAGTCGTCGTGCTAA 59.407 50.000 0.00 0.00 0.00 3.09
503 605 0.110056 GTCGGAAAGTCGTCGTGCTA 60.110 55.000 0.00 0.00 0.00 3.49
504 606 1.371389 GTCGGAAAGTCGTCGTGCT 60.371 57.895 0.00 0.00 0.00 4.40
505 607 1.371389 AGTCGGAAAGTCGTCGTGC 60.371 57.895 0.00 0.00 0.00 5.34
506 608 0.317603 ACAGTCGGAAAGTCGTCGTG 60.318 55.000 0.00 0.00 0.00 4.35
507 609 0.040603 GACAGTCGGAAAGTCGTCGT 60.041 55.000 0.00 0.00 0.00 4.34
508 610 0.237761 AGACAGTCGGAAAGTCGTCG 59.762 55.000 0.00 0.00 37.36 5.12
509 611 2.483491 AGTAGACAGTCGGAAAGTCGTC 59.517 50.000 0.00 0.00 37.36 4.20
510 612 2.502295 AGTAGACAGTCGGAAAGTCGT 58.498 47.619 0.00 0.00 37.36 4.34
511 613 3.434641 TGTAGTAGACAGTCGGAAAGTCG 59.565 47.826 0.00 0.00 37.36 4.18
512 614 5.152804 GTTGTAGTAGACAGTCGGAAAGTC 58.847 45.833 0.00 3.60 39.88 3.01
513 615 4.581824 TGTTGTAGTAGACAGTCGGAAAGT 59.418 41.667 0.00 0.00 39.88 2.66
514 616 5.117355 TGTTGTAGTAGACAGTCGGAAAG 57.883 43.478 0.00 0.00 39.88 2.62
515 617 5.068198 ACTTGTTGTAGTAGACAGTCGGAAA 59.932 40.000 0.00 0.00 39.88 3.13
516 618 4.581824 ACTTGTTGTAGTAGACAGTCGGAA 59.418 41.667 0.00 0.00 39.88 4.30
517 619 4.139786 ACTTGTTGTAGTAGACAGTCGGA 58.860 43.478 0.00 0.00 39.88 4.55
518 620 4.500603 ACTTGTTGTAGTAGACAGTCGG 57.499 45.455 0.00 0.00 39.88 4.79
519 621 5.173312 CACAACTTGTTGTAGTAGACAGTCG 59.827 44.000 17.26 0.00 39.88 4.18
520 622 5.050972 GCACAACTTGTTGTAGTAGACAGTC 60.051 44.000 17.26 0.00 39.88 3.51
521 623 4.809426 GCACAACTTGTTGTAGTAGACAGT 59.191 41.667 17.26 0.00 39.88 3.55
522 624 4.211374 GGCACAACTTGTTGTAGTAGACAG 59.789 45.833 17.26 5.63 39.88 3.51
523 625 4.124238 GGCACAACTTGTTGTAGTAGACA 58.876 43.478 17.26 0.00 35.78 3.41
524 626 3.497262 GGGCACAACTTGTTGTAGTAGAC 59.503 47.826 17.26 8.51 33.17 2.59
525 627 3.735591 GGGCACAACTTGTTGTAGTAGA 58.264 45.455 17.26 0.00 33.17 2.59
526 628 2.478894 CGGGCACAACTTGTTGTAGTAG 59.521 50.000 17.26 7.80 33.17 2.57
527 629 2.102757 TCGGGCACAACTTGTTGTAGTA 59.897 45.455 17.26 1.74 33.17 1.82
528 630 1.134340 TCGGGCACAACTTGTTGTAGT 60.134 47.619 17.26 0.00 33.17 2.73
529 631 1.263217 GTCGGGCACAACTTGTTGTAG 59.737 52.381 17.26 12.96 33.17 2.74
530 632 1.134340 AGTCGGGCACAACTTGTTGTA 60.134 47.619 17.26 1.01 33.17 2.41
531 633 0.393808 AGTCGGGCACAACTTGTTGT 60.394 50.000 12.73 12.73 35.14 3.32
532 634 0.307760 GAGTCGGGCACAACTTGTTG 59.692 55.000 11.44 11.44 0.00 3.33
533 635 0.818040 GGAGTCGGGCACAACTTGTT 60.818 55.000 0.00 0.00 0.00 2.83
534 636 1.227853 GGAGTCGGGCACAACTTGT 60.228 57.895 0.00 0.00 0.00 3.16
535 637 2.317609 CGGAGTCGGGCACAACTTG 61.318 63.158 0.00 0.00 0.00 3.16
536 638 2.030562 CGGAGTCGGGCACAACTT 59.969 61.111 0.00 0.00 0.00 2.66
553 655 3.866582 CATCACCCCTCCCTCGCC 61.867 72.222 0.00 0.00 0.00 5.54
554 656 2.764128 TCATCACCCCTCCCTCGC 60.764 66.667 0.00 0.00 0.00 5.03
555 657 2.786495 CGTCATCACCCCTCCCTCG 61.786 68.421 0.00 0.00 0.00 4.63
556 658 2.435693 CCGTCATCACCCCTCCCTC 61.436 68.421 0.00 0.00 0.00 4.30
557 659 2.365635 CCGTCATCACCCCTCCCT 60.366 66.667 0.00 0.00 0.00 4.20
558 660 4.176752 GCCGTCATCACCCCTCCC 62.177 72.222 0.00 0.00 0.00 4.30
559 661 4.530857 CGCCGTCATCACCCCTCC 62.531 72.222 0.00 0.00 0.00 4.30
560 662 4.530857 CCGCCGTCATCACCCCTC 62.531 72.222 0.00 0.00 0.00 4.30
583 685 1.714794 ATCACTGAAACGAGCCGAAG 58.285 50.000 1.50 0.00 0.00 3.79
584 686 1.798223 CAATCACTGAAACGAGCCGAA 59.202 47.619 1.50 0.00 0.00 4.30
585 687 1.270094 ACAATCACTGAAACGAGCCGA 60.270 47.619 1.50 0.00 0.00 5.54
586 688 1.148310 ACAATCACTGAAACGAGCCG 58.852 50.000 0.00 0.00 0.00 5.52
587 689 3.326747 ACTACAATCACTGAAACGAGCC 58.673 45.455 0.00 0.00 0.00 4.70
588 690 3.059570 CGACTACAATCACTGAAACGAGC 59.940 47.826 0.00 0.00 0.00 5.03
589 691 4.227538 ACGACTACAATCACTGAAACGAG 58.772 43.478 0.00 0.00 0.00 4.18
590 692 4.224433 GACGACTACAATCACTGAAACGA 58.776 43.478 0.00 0.00 0.00 3.85
591 693 3.057739 CGACGACTACAATCACTGAAACG 59.942 47.826 0.00 0.00 0.00 3.60
592 694 3.181543 GCGACGACTACAATCACTGAAAC 60.182 47.826 0.00 0.00 0.00 2.78
593 695 2.984471 GCGACGACTACAATCACTGAAA 59.016 45.455 0.00 0.00 0.00 2.69
594 696 2.228103 AGCGACGACTACAATCACTGAA 59.772 45.455 0.00 0.00 0.00 3.02
595 697 1.810755 AGCGACGACTACAATCACTGA 59.189 47.619 0.00 0.00 0.00 3.41
596 698 2.264109 AGCGACGACTACAATCACTG 57.736 50.000 0.00 0.00 0.00 3.66
597 699 2.355132 CCTAGCGACGACTACAATCACT 59.645 50.000 0.00 0.00 0.00 3.41
598 700 2.097142 ACCTAGCGACGACTACAATCAC 59.903 50.000 0.00 0.00 0.00 3.06
599 701 2.096980 CACCTAGCGACGACTACAATCA 59.903 50.000 0.00 0.00 0.00 2.57
600 702 2.541178 CCACCTAGCGACGACTACAATC 60.541 54.545 0.00 0.00 0.00 2.67
601 703 1.404391 CCACCTAGCGACGACTACAAT 59.596 52.381 0.00 0.00 0.00 2.71
602 704 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
603 705 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
604 706 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
605 707 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
606 708 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
607 709 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
608 710 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
609 711 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
610 712 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
611 713 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
612 714 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
613 715 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
614 716 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
615 717 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
616 718 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
617 719 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
618 720 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
619 721 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
620 722 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
621 723 7.787725 AAAAATTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
646 748 8.395633 GGCATTACAACGAACACTAGAAATAAT 58.604 33.333 0.00 0.00 0.00 1.28
647 749 7.412129 CGGCATTACAACGAACACTAGAAATAA 60.412 37.037 0.00 0.00 0.00 1.40
648 750 6.035220 CGGCATTACAACGAACACTAGAAATA 59.965 38.462 0.00 0.00 0.00 1.40
649 751 5.163893 CGGCATTACAACGAACACTAGAAAT 60.164 40.000 0.00 0.00 0.00 2.17
650 752 4.150980 CGGCATTACAACGAACACTAGAAA 59.849 41.667 0.00 0.00 0.00 2.52
651 753 3.676172 CGGCATTACAACGAACACTAGAA 59.324 43.478 0.00 0.00 0.00 2.10
652 754 3.247442 CGGCATTACAACGAACACTAGA 58.753 45.455 0.00 0.00 0.00 2.43
653 755 2.991190 ACGGCATTACAACGAACACTAG 59.009 45.455 0.00 0.00 0.00 2.57
654 756 2.732500 CACGGCATTACAACGAACACTA 59.267 45.455 0.00 0.00 0.00 2.74
655 757 1.529438 CACGGCATTACAACGAACACT 59.471 47.619 0.00 0.00 0.00 3.55
656 758 1.527736 TCACGGCATTACAACGAACAC 59.472 47.619 0.00 0.00 0.00 3.32
657 759 1.867166 TCACGGCATTACAACGAACA 58.133 45.000 0.00 0.00 0.00 3.18
658 760 2.475519 CCATCACGGCATTACAACGAAC 60.476 50.000 0.00 0.00 0.00 3.95
659 761 1.735018 CCATCACGGCATTACAACGAA 59.265 47.619 0.00 0.00 0.00 3.85
660 762 1.066787 TCCATCACGGCATTACAACGA 60.067 47.619 0.00 0.00 33.14 3.85
661 763 1.364721 TCCATCACGGCATTACAACG 58.635 50.000 0.00 0.00 33.14 4.10
662 764 3.006940 TCTTCCATCACGGCATTACAAC 58.993 45.455 0.00 0.00 33.14 3.32
663 765 3.342377 TCTTCCATCACGGCATTACAA 57.658 42.857 0.00 0.00 33.14 2.41
664 766 3.118445 TCATCTTCCATCACGGCATTACA 60.118 43.478 0.00 0.00 33.14 2.41
665 767 3.466836 TCATCTTCCATCACGGCATTAC 58.533 45.455 0.00 0.00 33.14 1.89
666 768 3.836365 TCATCTTCCATCACGGCATTA 57.164 42.857 0.00 0.00 33.14 1.90
667 769 2.715749 TCATCTTCCATCACGGCATT 57.284 45.000 0.00 0.00 33.14 3.56
668 770 2.715749 TTCATCTTCCATCACGGCAT 57.284 45.000 0.00 0.00 33.14 4.40
669 771 2.715749 ATTCATCTTCCATCACGGCA 57.284 45.000 0.00 0.00 33.14 5.69
670 772 3.995199 TCTATTCATCTTCCATCACGGC 58.005 45.455 0.00 0.00 33.14 5.68
671 773 6.226052 TCAATCTATTCATCTTCCATCACGG 58.774 40.000 0.00 0.00 0.00 4.94
672 774 7.719778 TTCAATCTATTCATCTTCCATCACG 57.280 36.000 0.00 0.00 0.00 4.35
673 775 9.118300 ACTTTCAATCTATTCATCTTCCATCAC 57.882 33.333 0.00 0.00 0.00 3.06
674 776 9.690913 AACTTTCAATCTATTCATCTTCCATCA 57.309 29.630 0.00 0.00 0.00 3.07
681 783 9.658799 TCGAGAAAACTTTCAATCTATTCATCT 57.341 29.630 5.07 0.00 39.61 2.90
712 814 9.552695 AGGAGAAAATCTTTATTGAGGGATTTT 57.447 29.630 10.83 10.83 45.21 1.82
735 837 2.703536 TGCTTGGTTTGACTACTGAGGA 59.296 45.455 0.00 0.00 0.00 3.71
1007 1119 1.421410 GCTGCTTATGGTCGTCACGG 61.421 60.000 0.00 0.00 0.00 4.94
1009 1121 0.721718 GTGCTGCTTATGGTCGTCAC 59.278 55.000 0.00 0.00 0.00 3.67
1029 1141 1.294780 CTCCAGCGACTCCTTGCTT 59.705 57.895 0.00 0.00 40.03 3.91
1158 1288 2.210711 GCCTATCCACCTCTCCCCG 61.211 68.421 0.00 0.00 0.00 5.73
1327 1457 2.737376 GACGTTGTGGGCTCGGAC 60.737 66.667 0.00 0.00 0.00 4.79
1332 1462 2.584391 GGAGAGGACGTTGTGGGCT 61.584 63.158 0.00 0.00 0.00 5.19
1371 1596 6.029346 ACCCTGAAATTTCATTGCACTTAG 57.971 37.500 20.76 6.35 36.46 2.18
1381 1620 4.347876 TCAGACTCAGACCCTGAAATTTCA 59.652 41.667 19.45 19.45 40.18 2.69
1644 1889 2.418356 GACACCCCGTGAACGTCA 59.582 61.111 1.75 0.00 36.96 4.35
1649 1894 1.460689 AGGAAGGACACCCCGTGAA 60.461 57.895 0.00 0.00 40.87 3.18
1748 1996 2.135933 GTGACAGCGCACTTCTAGTTT 58.864 47.619 11.47 0.00 35.91 2.66
1942 2196 0.698818 AAAGACCCTCTTCGGCCAAT 59.301 50.000 2.24 0.00 35.27 3.16
2058 2313 2.175715 AGGAAGCCAAAGACCACTCTTT 59.824 45.455 0.00 0.00 46.01 2.52
2184 2500 2.431942 CGACAGGTACGTGCACCC 60.432 66.667 15.25 6.91 39.62 4.61
2413 2743 2.365823 GCGTTGAGATCGCGGTTTA 58.634 52.632 6.13 0.00 43.94 2.01
2437 2767 4.586884 AGAGATCGTGGTTAGTGTAGTCA 58.413 43.478 0.00 0.00 0.00 3.41
2471 2801 6.370718 GTCTACATACCTTTGTGACCGAAAAT 59.629 38.462 0.00 0.00 0.00 1.82
2621 2952 4.287781 TGCTCGAACGCGGACCAA 62.288 61.111 12.47 0.00 38.28 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.