Multiple sequence alignment - TraesCS6B01G148000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G148000 chr6B 100.000 2989 0 0 1 2989 149053886 149056874 0.000000e+00 5520.0
1 TraesCS6B01G148000 chr6B 91.929 731 59 0 1285 2015 171728475 171727745 0.000000e+00 1024.0
2 TraesCS6B01G148000 chr6B 100.000 33 0 0 1075 1107 171972289 171972257 8.950000e-06 62.1
3 TraesCS6B01G148000 chr6D 89.215 1057 81 12 1300 2336 75372542 75373585 0.000000e+00 1290.0
4 TraesCS6B01G148000 chr6D 91.267 813 67 3 1163 1973 75372177 75372987 0.000000e+00 1105.0
5 TraesCS6B01G148000 chr6D 81.891 1248 114 48 1 1163 75370866 75372086 0.000000e+00 950.0
6 TraesCS6B01G148000 chr6D 93.182 132 9 0 2784 2915 75374227 75374358 8.450000e-46 195.0
7 TraesCS6B01G148000 chr6D 92.593 54 3 1 1068 1120 89357047 89356994 3.190000e-10 76.8
8 TraesCS6B01G148000 chr6D 100.000 38 0 0 2536 2573 75374086 75374123 1.490000e-08 71.3
9 TraesCS6B01G148000 chr2D 92.179 780 54 6 1236 2012 520583588 520582813 0.000000e+00 1096.0
10 TraesCS6B01G148000 chr2D 81.200 250 25 16 389 618 520584597 520584350 6.580000e-42 182.0
11 TraesCS6B01G148000 chr6A 87.560 836 46 25 326 1115 91422605 91423428 0.000000e+00 915.0
12 TraesCS6B01G148000 chr6A 92.424 132 10 0 2784 2915 91426213 91426344 3.930000e-44 189.0
13 TraesCS6B01G148000 chr6A 95.745 47 0 2 2529 2573 91426037 91426083 1.150000e-09 75.0
14 TraesCS6B01G148000 chr6A 93.182 44 3 0 2946 2989 91426347 91426390 6.920000e-07 65.8
15 TraesCS6B01G148000 chr7D 89.496 695 73 0 1300 1994 562148958 562148264 0.000000e+00 880.0
16 TraesCS6B01G148000 chr7D 89.796 686 70 0 1297 1982 562149189 562148504 0.000000e+00 880.0
17 TraesCS6B01G148000 chrUn 89.255 698 73 2 1297 1993 20705501 20706197 0.000000e+00 872.0
18 TraesCS6B01G148000 chr7A 89.614 674 70 0 1309 1982 647307230 647306557 0.000000e+00 857.0
19 TraesCS6B01G148000 chr7A 88.889 693 77 0 1297 1989 647917453 647916761 0.000000e+00 854.0
20 TraesCS6B01G148000 chr2B 80.567 247 26 13 389 618 613038685 613038444 1.420000e-38 171.0
21 TraesCS6B01G148000 chr1B 85.294 136 12 6 2208 2338 654865141 654865273 1.870000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G148000 chr6B 149053886 149056874 2988 False 5520.00 5520 100.00000 1 2989 1 chr6B.!!$F1 2988
1 TraesCS6B01G148000 chr6B 171727745 171728475 730 True 1024.00 1024 91.92900 1285 2015 1 chr6B.!!$R1 730
2 TraesCS6B01G148000 chr6D 75370866 75374358 3492 False 722.26 1290 91.11100 1 2915 5 chr6D.!!$F1 2914
3 TraesCS6B01G148000 chr2D 520582813 520584597 1784 True 639.00 1096 86.68950 389 2012 2 chr2D.!!$R1 1623
4 TraesCS6B01G148000 chr6A 91422605 91426390 3785 False 311.20 915 92.22775 326 2989 4 chr6A.!!$F1 2663
5 TraesCS6B01G148000 chr7D 562148264 562149189 925 True 880.00 880 89.64600 1297 1994 2 chr7D.!!$R1 697
6 TraesCS6B01G148000 chrUn 20705501 20706197 696 False 872.00 872 89.25500 1297 1993 1 chrUn.!!$F1 696
7 TraesCS6B01G148000 chr7A 647306557 647307230 673 True 857.00 857 89.61400 1309 1982 1 chr7A.!!$R1 673
8 TraesCS6B01G148000 chr7A 647916761 647917453 692 True 854.00 854 88.88900 1297 1989 1 chr7A.!!$R2 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 222 0.108186 ATGCAGTGATTCTCCGCGAA 60.108 50.0 8.23 0.0 35.78 4.7 F
655 707 0.253327 GGTAGTTGGAGCCTTGGAGG 59.747 60.0 0.00 0.0 38.80 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 2040 0.106335 CGAAGATCTGCATGCCTCCT 59.894 55.0 16.68 4.18 0.00 3.69 R
2621 4670 0.036294 AAAGAGCAGGGTACGCCTTC 60.036 55.0 6.27 2.37 34.45 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.609681 GAGGTGAGAGAGACGGGTGT 60.610 60.000 0.00 0.00 0.00 4.16
59 60 3.216292 GGGTGTGGCGCAACTTGT 61.216 61.111 17.46 0.00 34.56 3.16
60 61 2.026014 GGTGTGGCGCAACTTGTG 59.974 61.111 17.46 0.00 0.00 3.33
64 65 1.265635 GTGTGGCGCAACTTGTGAATA 59.734 47.619 17.46 0.00 0.00 1.75
67 68 1.472082 TGGCGCAACTTGTGAATATGG 59.528 47.619 10.83 0.00 0.00 2.74
73 74 2.689983 CAACTTGTGAATATGGAGGGGC 59.310 50.000 0.00 0.00 0.00 5.80
94 95 5.016173 GGCCCCTTTTATATGTGCATATGA 58.984 41.667 6.97 4.19 35.71 2.15
98 99 5.705441 CCCTTTTATATGTGCATATGACGGT 59.295 40.000 6.97 0.00 35.71 4.83
99 100 6.348458 CCCTTTTATATGTGCATATGACGGTG 60.348 42.308 6.97 0.00 35.71 4.94
103 104 3.541996 ATGTGCATATGACGGTGAAGA 57.458 42.857 6.97 0.00 0.00 2.87
114 115 1.302511 GGTGAAGATGTGGCACGGT 60.303 57.895 13.77 3.87 33.48 4.83
171 191 2.279741 TCACAGCGCAGGATAATCAAC 58.720 47.619 11.47 0.00 0.00 3.18
172 192 1.331756 CACAGCGCAGGATAATCAACC 59.668 52.381 11.47 0.00 0.00 3.77
183 203 5.048364 CAGGATAATCAACCACCGTGAAAAA 60.048 40.000 0.00 0.00 0.00 1.94
189 209 1.398692 ACCACCGTGAAAAATGCAGT 58.601 45.000 0.00 0.00 0.00 4.40
192 212 2.030007 CCACCGTGAAAAATGCAGTGAT 60.030 45.455 0.00 0.00 0.00 3.06
194 214 3.670055 CACCGTGAAAAATGCAGTGATTC 59.330 43.478 0.00 6.12 0.00 2.52
195 215 3.569701 ACCGTGAAAAATGCAGTGATTCT 59.430 39.130 12.35 0.00 0.00 2.40
198 218 4.161333 GTGAAAAATGCAGTGATTCTCCG 58.839 43.478 12.35 0.00 0.00 4.63
202 222 0.108186 ATGCAGTGATTCTCCGCGAA 60.108 50.000 8.23 0.00 35.78 4.70
219 239 2.662700 CGAAGCGTACACCATATCCTC 58.337 52.381 0.00 0.00 0.00 3.71
220 240 2.034179 CGAAGCGTACACCATATCCTCA 59.966 50.000 0.00 0.00 0.00 3.86
222 242 2.667470 AGCGTACACCATATCCTCACT 58.333 47.619 0.00 0.00 0.00 3.41
224 244 2.100916 GCGTACACCATATCCTCACTGT 59.899 50.000 0.00 0.00 0.00 3.55
226 246 4.202080 GCGTACACCATATCCTCACTGTAA 60.202 45.833 0.00 0.00 0.00 2.41
227 247 5.279384 CGTACACCATATCCTCACTGTAAC 58.721 45.833 0.00 0.00 0.00 2.50
228 248 5.067413 CGTACACCATATCCTCACTGTAACT 59.933 44.000 0.00 0.00 0.00 2.24
230 250 4.098044 ACACCATATCCTCACTGTAACTCG 59.902 45.833 0.00 0.00 0.00 4.18
231 251 4.338400 CACCATATCCTCACTGTAACTCGA 59.662 45.833 0.00 0.00 0.00 4.04
232 252 4.338682 ACCATATCCTCACTGTAACTCGAC 59.661 45.833 0.00 0.00 0.00 4.20
235 256 1.534163 TCCTCACTGTAACTCGACGTG 59.466 52.381 0.00 0.00 0.00 4.49
244 265 3.925299 TGTAACTCGACGTGTCTCTCTAG 59.075 47.826 2.65 0.00 0.00 2.43
245 266 1.361793 ACTCGACGTGTCTCTCTAGC 58.638 55.000 0.00 0.00 0.00 3.42
253 274 2.197577 GTGTCTCTCTAGCAAATCGCC 58.802 52.381 0.00 0.00 44.04 5.54
255 276 2.233676 TGTCTCTCTAGCAAATCGCCAA 59.766 45.455 0.00 0.00 44.04 4.52
256 277 2.863137 GTCTCTCTAGCAAATCGCCAAG 59.137 50.000 0.00 0.00 44.04 3.61
257 278 2.760650 TCTCTCTAGCAAATCGCCAAGA 59.239 45.455 0.00 0.00 44.04 3.02
259 280 2.159043 TCTCTAGCAAATCGCCAAGAGG 60.159 50.000 11.80 0.00 45.21 3.69
312 337 6.628919 AAAACTTACCTATTTGCAACGAGT 57.371 33.333 0.00 0.00 0.00 4.18
313 338 6.628919 AAACTTACCTATTTGCAACGAGTT 57.371 33.333 0.00 0.00 0.00 3.01
314 339 6.628919 AACTTACCTATTTGCAACGAGTTT 57.371 33.333 0.00 0.00 0.00 2.66
315 340 6.237313 ACTTACCTATTTGCAACGAGTTTC 57.763 37.500 0.00 0.00 0.00 2.78
316 341 5.995897 ACTTACCTATTTGCAACGAGTTTCT 59.004 36.000 0.00 0.00 0.00 2.52
317 342 7.156673 ACTTACCTATTTGCAACGAGTTTCTA 58.843 34.615 0.00 0.00 0.00 2.10
318 343 7.658575 ACTTACCTATTTGCAACGAGTTTCTAA 59.341 33.333 0.00 0.00 0.00 2.10
319 344 6.870971 ACCTATTTGCAACGAGTTTCTAAA 57.129 33.333 0.00 0.00 0.00 1.85
320 345 7.266922 ACCTATTTGCAACGAGTTTCTAAAA 57.733 32.000 0.00 0.00 0.00 1.52
321 346 7.708998 ACCTATTTGCAACGAGTTTCTAAAAA 58.291 30.769 0.00 0.00 0.00 1.94
398 426 4.719369 ACGAGCAGACGGAACCGC 62.719 66.667 13.32 6.39 44.19 5.68
480 522 4.856801 CGCCTCCAATCCCCACCG 62.857 72.222 0.00 0.00 0.00 4.94
482 524 3.411517 CCTCCAATCCCCACCGCT 61.412 66.667 0.00 0.00 0.00 5.52
604 656 1.749634 CCTTCCTCCGTCTCACGTATT 59.250 52.381 0.00 0.00 40.58 1.89
634 686 0.668535 ACGCTTTTTGAGGTGCTTCC 59.331 50.000 0.00 0.00 0.00 3.46
655 707 0.253327 GGTAGTTGGAGCCTTGGAGG 59.747 60.000 0.00 0.00 38.80 4.30
656 708 1.276622 GTAGTTGGAGCCTTGGAGGA 58.723 55.000 0.00 0.00 37.67 3.71
657 709 1.208293 GTAGTTGGAGCCTTGGAGGAG 59.792 57.143 0.00 0.00 37.67 3.69
684 747 3.089784 CGTCGAATTTGCCCCGAG 58.910 61.111 0.00 0.00 32.65 4.63
742 825 4.238385 GCACAGCGACTTCGTACA 57.762 55.556 0.00 0.00 42.22 2.90
846 941 3.808174 GCTTATGGTCTCGGATGTTAACC 59.192 47.826 2.48 0.00 0.00 2.85
849 944 4.667519 ATGGTCTCGGATGTTAACCTAC 57.332 45.455 2.48 0.00 0.00 3.18
867 962 5.611374 ACCTACGCATGTTTTATCTGCTAT 58.389 37.500 0.00 0.00 33.75 2.97
868 963 6.755206 ACCTACGCATGTTTTATCTGCTATA 58.245 36.000 0.00 0.00 33.75 1.31
870 965 8.528643 ACCTACGCATGTTTTATCTGCTATATA 58.471 33.333 0.00 0.00 33.75 0.86
871 966 9.366216 CCTACGCATGTTTTATCTGCTATATAA 57.634 33.333 0.00 0.00 33.75 0.98
909 1033 6.450545 TCTCGAATTCAATAGTAGCTCATGG 58.549 40.000 6.22 0.00 0.00 3.66
931 1072 4.571176 GGGCAGTAGTTCAATAGTACTTGC 59.429 45.833 0.00 0.00 40.32 4.01
932 1073 5.420409 GGCAGTAGTTCAATAGTACTTGCT 58.580 41.667 0.00 0.00 40.32 3.91
933 1074 5.520649 GGCAGTAGTTCAATAGTACTTGCTC 59.479 44.000 0.00 0.00 40.32 4.26
934 1075 5.520649 GCAGTAGTTCAATAGTACTTGCTCC 59.479 44.000 0.00 0.00 40.32 4.70
937 1078 8.634444 CAGTAGTTCAATAGTACTTGCTCCTAT 58.366 37.037 0.00 0.00 40.32 2.57
939 1080 7.056844 AGTTCAATAGTACTTGCTCCTATCC 57.943 40.000 0.00 0.00 0.00 2.59
1062 1245 2.983402 TTCTAACCTGTCGTCTGTCG 57.017 50.000 0.00 0.00 41.41 4.35
1109 1293 3.857010 GCTGCTGCCGTTTGTTTATTCTT 60.857 43.478 3.85 0.00 0.00 2.52
1135 1334 7.065894 GTCTAGATGTGCTAATTGTTATTGCG 58.934 38.462 0.00 0.00 0.00 4.85
1142 1341 6.017192 TGTGCTAATTGTTATTGCGCATCTAT 60.017 34.615 12.75 4.22 35.44 1.98
1205 1496 9.474920 TTTAGCAAAATTGTTTTCTCTATGGTG 57.525 29.630 0.00 0.00 0.00 4.17
1520 2040 0.252103 ACCTTGTCCTCCGCCTTAGA 60.252 55.000 0.00 0.00 0.00 2.10
1754 2734 3.991051 CTGCGTCTCCGTGGTGGT 61.991 66.667 0.00 0.00 39.52 4.16
1778 2758 3.181440 TGCAGATCTTTGTGAAGACCCTT 60.181 43.478 0.00 0.00 44.27 3.95
1856 2836 1.004745 GCCAAGATCCAGGACAAGGAA 59.995 52.381 5.26 0.00 38.93 3.36
2021 3001 0.321671 GGACCTGCTGCTGTTAGTCA 59.678 55.000 13.31 0.00 0.00 3.41
2036 3016 5.834169 TGTTAGTCATGTGTCTTGTTCGTA 58.166 37.500 0.00 0.00 0.00 3.43
2047 3027 7.086376 TGTGTCTTGTTCGTATTAAGTCTACC 58.914 38.462 0.00 0.00 0.00 3.18
2049 3029 6.149308 TGTCTTGTTCGTATTAAGTCTACCGA 59.851 38.462 0.00 0.00 0.00 4.69
2088 3068 0.536724 CGAGTCCCCATGATGTGTGA 59.463 55.000 0.00 0.00 0.00 3.58
2089 3069 1.066215 CGAGTCCCCATGATGTGTGAA 60.066 52.381 0.00 0.00 0.00 3.18
2090 3070 2.615240 CGAGTCCCCATGATGTGTGAAA 60.615 50.000 0.00 0.00 0.00 2.69
2091 3071 2.749621 GAGTCCCCATGATGTGTGAAAC 59.250 50.000 0.00 0.00 37.35 2.78
2119 3110 9.131791 GTTATCTGGTATGGTTTGGTATGAATT 57.868 33.333 0.00 0.00 0.00 2.17
2122 3113 8.746052 TCTGGTATGGTTTGGTATGAATTAAG 57.254 34.615 0.00 0.00 0.00 1.85
2179 3173 5.366482 TTTGATATCTCCCGGTTGAATGA 57.634 39.130 0.00 0.00 0.00 2.57
2182 3176 5.308014 TGATATCTCCCGGTTGAATGATTG 58.692 41.667 0.00 0.00 0.00 2.67
2196 3190 7.603784 GGTTGAATGATTGCTTCCAGTTTTTAT 59.396 33.333 0.00 0.00 0.00 1.40
2197 3191 8.650714 GTTGAATGATTGCTTCCAGTTTTTATC 58.349 33.333 0.00 0.00 0.00 1.75
2198 3192 8.125978 TGAATGATTGCTTCCAGTTTTTATCT 57.874 30.769 0.00 0.00 0.00 1.98
2199 3193 9.241919 TGAATGATTGCTTCCAGTTTTTATCTA 57.758 29.630 0.00 0.00 0.00 1.98
2200 3194 9.727627 GAATGATTGCTTCCAGTTTTTATCTAG 57.272 33.333 0.00 0.00 0.00 2.43
2201 3195 7.088589 TGATTGCTTCCAGTTTTTATCTAGC 57.911 36.000 0.00 0.00 0.00 3.42
2202 3196 6.658816 TGATTGCTTCCAGTTTTTATCTAGCA 59.341 34.615 0.00 0.00 35.77 3.49
2203 3197 6.892658 TTGCTTCCAGTTTTTATCTAGCAA 57.107 33.333 0.00 0.00 42.91 3.91
2217 3211 8.425577 TTTATCTAGCAAAACTAGCAGTGATC 57.574 34.615 0.00 0.00 46.93 2.92
2222 3216 5.551233 AGCAAAACTAGCAGTGATCTTACA 58.449 37.500 0.00 0.00 0.00 2.41
2223 3217 5.997746 AGCAAAACTAGCAGTGATCTTACAA 59.002 36.000 0.00 0.00 0.00 2.41
2227 3221 7.778470 AAACTAGCAGTGATCTTACAATAGC 57.222 36.000 0.00 0.00 0.00 2.97
2230 3224 3.133003 AGCAGTGATCTTACAATAGCGGT 59.867 43.478 0.00 0.00 0.00 5.68
2232 3226 4.332819 GCAGTGATCTTACAATAGCGGTTT 59.667 41.667 0.00 0.00 0.00 3.27
2237 3233 6.092259 GTGATCTTACAATAGCGGTTTTCTGT 59.908 38.462 0.00 0.00 0.00 3.41
2238 3234 5.856126 TCTTACAATAGCGGTTTTCTGTG 57.144 39.130 0.00 0.00 0.00 3.66
2239 3235 5.543714 TCTTACAATAGCGGTTTTCTGTGA 58.456 37.500 0.00 0.00 0.00 3.58
2240 3236 5.992829 TCTTACAATAGCGGTTTTCTGTGAA 59.007 36.000 0.00 0.00 0.00 3.18
2248 3244 4.022416 AGCGGTTTTCTGTGAATGCATTTA 60.022 37.500 14.33 6.59 0.00 1.40
2263 3259 2.294512 GCATTTAATGGGCTGTAGCTCC 59.705 50.000 7.08 3.15 41.95 4.70
2273 3269 2.019156 GCTGTAGCTCCCAATGTTCCC 61.019 57.143 0.00 0.00 38.21 3.97
2283 3279 2.094752 CCCAATGTTCCCGTGAAATCAC 60.095 50.000 3.43 3.43 43.15 3.06
2288 3284 4.188247 TGTTCCCGTGAAATCACTAGAG 57.812 45.455 11.45 0.00 44.34 2.43
2293 3289 4.994852 TCCCGTGAAATCACTAGAGTTTTG 59.005 41.667 11.45 0.00 44.34 2.44
2296 3292 5.277779 CCGTGAAATCACTAGAGTTTTGCAA 60.278 40.000 11.45 0.00 44.34 4.08
2297 3293 5.848036 CGTGAAATCACTAGAGTTTTGCAAG 59.152 40.000 11.45 0.00 44.34 4.01
2299 3295 7.196331 GTGAAATCACTAGAGTTTTGCAAGTT 58.804 34.615 6.30 0.00 43.25 2.66
2300 3296 7.377131 GTGAAATCACTAGAGTTTTGCAAGTTC 59.623 37.037 6.30 0.00 43.25 3.01
2304 3301 9.944376 AATCACTAGAGTTTTGCAAGTTCTATA 57.056 29.630 13.59 8.50 0.00 1.31
2318 3315 9.151471 TGCAAGTTCTATACATGTTTCTTCTAC 57.849 33.333 2.30 0.00 0.00 2.59
2322 3321 9.877178 AGTTCTATACATGTTTCTTCTACTTGG 57.123 33.333 2.30 0.00 0.00 3.61
2336 3335 1.242076 ACTTGGATGCTGCTGTGTTC 58.758 50.000 0.00 0.00 0.00 3.18
2337 3336 1.241165 CTTGGATGCTGCTGTGTTCA 58.759 50.000 0.00 0.00 0.00 3.18
2338 3337 0.953727 TTGGATGCTGCTGTGTTCAC 59.046 50.000 0.00 0.00 0.00 3.18
2339 3338 0.890542 TGGATGCTGCTGTGTTCACC 60.891 55.000 0.00 0.00 0.00 4.02
2340 3339 1.589716 GGATGCTGCTGTGTTCACCC 61.590 60.000 0.00 0.00 0.00 4.61
2342 3341 0.607489 ATGCTGCTGTGTTCACCCTC 60.607 55.000 0.00 0.00 0.00 4.30
2344 3343 1.233285 GCTGCTGTGTTCACCCTCTG 61.233 60.000 0.00 0.00 0.00 3.35
2346 3345 1.344438 CTGCTGTGTTCACCCTCTGTA 59.656 52.381 0.37 0.00 0.00 2.74
2347 3346 1.765904 TGCTGTGTTCACCCTCTGTAA 59.234 47.619 0.37 0.00 0.00 2.41
2348 3347 2.224281 TGCTGTGTTCACCCTCTGTAAG 60.224 50.000 0.37 0.00 0.00 2.34
2350 3349 1.270094 TGTGTTCACCCTCTGTAAGCG 60.270 52.381 0.37 0.00 0.00 4.68
2351 3350 1.045407 TGTTCACCCTCTGTAAGCGT 58.955 50.000 0.00 0.00 0.00 5.07
2352 3351 2.029649 GTGTTCACCCTCTGTAAGCGTA 60.030 50.000 0.00 0.00 0.00 4.42
2353 3352 2.230508 TGTTCACCCTCTGTAAGCGTAG 59.769 50.000 0.00 0.00 0.00 3.51
2356 3355 1.544691 CACCCTCTGTAAGCGTAGTGT 59.455 52.381 0.00 0.00 0.00 3.55
2358 3357 2.631545 ACCCTCTGTAAGCGTAGTGTTT 59.368 45.455 0.00 0.00 0.00 2.83
2388 3470 1.202222 GCTCGTGCAATGGATTCCTTG 60.202 52.381 4.26 7.28 39.41 3.61
2389 3471 2.358957 CTCGTGCAATGGATTCCTTGA 58.641 47.619 15.05 0.00 0.00 3.02
2429 3656 8.587608 TGATTCTTTGAATAAAAGTGGATGCTT 58.412 29.630 0.00 0.00 44.83 3.91
2432 3659 8.862325 TCTTTGAATAAAAGTGGATGCTTCTA 57.138 30.769 0.00 0.00 44.83 2.10
2433 3660 8.950210 TCTTTGAATAAAAGTGGATGCTTCTAG 58.050 33.333 0.00 0.00 44.83 2.43
2437 3664 7.882791 TGAATAAAAGTGGATGCTTCTAGTTCA 59.117 33.333 6.51 0.00 0.00 3.18
2440 3667 6.360370 AAAGTGGATGCTTCTAGTTCAGTA 57.640 37.500 6.51 0.00 0.00 2.74
2444 3671 5.808030 GTGGATGCTTCTAGTTCAGTACTTC 59.192 44.000 0.00 0.00 38.33 3.01
2448 3675 7.387948 GGATGCTTCTAGTTCAGTACTTCAAAA 59.612 37.037 0.00 0.00 38.33 2.44
2450 3677 7.916552 TGCTTCTAGTTCAGTACTTCAAAAAC 58.083 34.615 0.00 0.00 38.33 2.43
2451 3678 7.551262 TGCTTCTAGTTCAGTACTTCAAAAACA 59.449 33.333 0.00 0.00 38.33 2.83
2452 3679 7.851472 GCTTCTAGTTCAGTACTTCAAAAACAC 59.149 37.037 0.00 0.00 38.33 3.32
2453 3680 7.459394 TCTAGTTCAGTACTTCAAAAACACG 57.541 36.000 0.00 0.00 38.33 4.49
2454 3681 7.037438 TCTAGTTCAGTACTTCAAAAACACGT 58.963 34.615 0.00 0.00 38.33 4.49
2462 4349 3.181510 ACTTCAAAAACACGTCTGTCTGC 60.182 43.478 0.00 0.00 0.00 4.26
2466 4359 4.664677 ACACGTCTGTCTGCGGGC 62.665 66.667 0.00 0.00 34.46 6.13
2479 4372 2.867472 CGGGCGCGATTCTGTTTT 59.133 55.556 19.65 0.00 0.00 2.43
2481 4374 1.226018 GGGCGCGATTCTGTTTTCG 60.226 57.895 12.10 0.00 38.37 3.46
2482 4375 1.495951 GGCGCGATTCTGTTTTCGT 59.504 52.632 12.10 0.00 37.66 3.85
2484 4377 1.662026 GGCGCGATTCTGTTTTCGTTT 60.662 47.619 12.10 0.00 37.66 3.60
2495 4388 9.753669 GATTCTGTTTTCGTTTCAAAAATGTTT 57.246 25.926 0.00 0.00 0.00 2.83
2526 4419 8.697846 TGTATGCTTACTGTATGTAGTTCAAC 57.302 34.615 10.74 0.00 32.08 3.18
2527 4420 8.308207 TGTATGCTTACTGTATGTAGTTCAACA 58.692 33.333 10.74 0.00 32.08 3.33
2530 4423 8.926715 TGCTTACTGTATGTAGTTCAACATAG 57.073 34.615 0.00 0.00 41.72 2.23
2531 4424 7.491372 TGCTTACTGTATGTAGTTCAACATAGC 59.509 37.037 0.00 0.00 41.72 2.97
2533 4426 8.697846 TTACTGTATGTAGTTCAACATAGCAC 57.302 34.615 0.00 0.00 41.72 4.40
2534 4427 6.936279 ACTGTATGTAGTTCAACATAGCACT 58.064 36.000 0.00 0.00 41.72 4.40
2579 4595 1.474077 GGGCTAGCAACCACAAAGATG 59.526 52.381 18.24 0.00 0.00 2.90
2583 4599 3.667960 GCTAGCAACCACAAAGATGTTCG 60.668 47.826 10.63 0.00 37.82 3.95
2595 4611 7.414436 CACAAAGATGTTCGTTTTCCTTTCTA 58.586 34.615 0.00 0.00 37.82 2.10
2609 4658 9.589111 GTTTTCCTTTCTATAGAGGTTCTACAG 57.411 37.037 2.02 0.00 30.79 2.74
2622 4671 8.423906 AGAGGTTCTACAGATTAAAACAGAGA 57.576 34.615 0.00 0.00 0.00 3.10
2623 4672 8.871125 AGAGGTTCTACAGATTAAAACAGAGAA 58.129 33.333 0.00 0.00 0.00 2.87
2624 4673 9.145865 GAGGTTCTACAGATTAAAACAGAGAAG 57.854 37.037 0.00 0.00 0.00 2.85
2625 4674 8.097662 AGGTTCTACAGATTAAAACAGAGAAGG 58.902 37.037 0.00 0.00 0.00 3.46
2626 4675 7.148390 GGTTCTACAGATTAAAACAGAGAAGGC 60.148 40.741 0.00 0.00 0.00 4.35
2627 4676 6.100004 TCTACAGATTAAAACAGAGAAGGCG 58.900 40.000 0.00 0.00 0.00 5.52
2628 4677 4.642429 ACAGATTAAAACAGAGAAGGCGT 58.358 39.130 0.00 0.00 0.00 5.68
2629 4678 5.790593 ACAGATTAAAACAGAGAAGGCGTA 58.209 37.500 0.00 0.00 0.00 4.42
2630 4679 5.638234 ACAGATTAAAACAGAGAAGGCGTAC 59.362 40.000 0.00 0.00 0.00 3.67
2631 4680 5.063564 CAGATTAAAACAGAGAAGGCGTACC 59.936 44.000 0.00 0.00 0.00 3.34
2632 4681 2.180432 AAAACAGAGAAGGCGTACCC 57.820 50.000 0.00 0.00 36.11 3.69
2634 4683 0.608640 AACAGAGAAGGCGTACCCTG 59.391 55.000 3.93 0.00 45.62 4.45
2635 4684 1.153549 CAGAGAAGGCGTACCCTGC 60.154 63.158 3.93 2.47 45.62 4.85
2638 4687 3.300013 GAAGGCGTACCCTGCTCT 58.700 61.111 3.93 0.00 45.62 4.09
2639 4688 1.597461 GAAGGCGTACCCTGCTCTT 59.403 57.895 3.93 0.61 45.62 2.85
2640 4689 0.036294 GAAGGCGTACCCTGCTCTTT 60.036 55.000 3.93 0.00 45.62 2.52
2641 4690 0.321653 AAGGCGTACCCTGCTCTTTG 60.322 55.000 3.93 0.00 45.62 2.77
2642 4691 1.745489 GGCGTACCCTGCTCTTTGG 60.745 63.158 0.00 0.00 0.00 3.28
2647 4696 3.170362 CCCTGCTCTTTGGGTGGA 58.830 61.111 0.00 0.00 38.65 4.02
2648 4697 1.460255 CCCTGCTCTTTGGGTGGAA 59.540 57.895 0.00 0.00 38.65 3.53
2649 4698 0.178964 CCCTGCTCTTTGGGTGGAAA 60.179 55.000 0.00 0.00 38.65 3.13
2650 4699 0.961753 CCTGCTCTTTGGGTGGAAAC 59.038 55.000 0.00 0.00 0.00 2.78
2651 4700 1.691196 CTGCTCTTTGGGTGGAAACA 58.309 50.000 0.00 0.00 38.70 2.83
2652 4701 2.242043 CTGCTCTTTGGGTGGAAACAT 58.758 47.619 0.00 0.00 46.14 2.71
2653 4702 2.229784 CTGCTCTTTGGGTGGAAACATC 59.770 50.000 0.00 0.00 46.14 3.06
2654 4703 1.200020 GCTCTTTGGGTGGAAACATCG 59.800 52.381 0.00 0.00 44.71 3.84
2655 4704 1.200020 CTCTTTGGGTGGAAACATCGC 59.800 52.381 0.00 0.00 44.71 4.58
2656 4705 0.243636 CTTTGGGTGGAAACATCGCC 59.756 55.000 0.00 0.00 44.71 5.54
2657 4706 0.178975 TTTGGGTGGAAACATCGCCT 60.179 50.000 0.00 0.00 44.71 5.52
2658 4707 0.893270 TTGGGTGGAAACATCGCCTG 60.893 55.000 0.00 0.00 44.71 4.85
2659 4708 1.002624 GGGTGGAAACATCGCCTGA 60.003 57.895 0.00 0.00 44.71 3.86
2660 4709 0.394352 GGGTGGAAACATCGCCTGAT 60.394 55.000 0.00 0.00 44.71 2.90
2661 4710 1.463674 GGTGGAAACATCGCCTGATT 58.536 50.000 0.00 0.00 46.14 2.57
2662 4711 1.818674 GGTGGAAACATCGCCTGATTT 59.181 47.619 0.00 0.00 46.14 2.17
2663 4712 2.159379 GGTGGAAACATCGCCTGATTTC 60.159 50.000 0.00 0.00 46.14 2.17
2664 4713 2.091541 TGGAAACATCGCCTGATTTCC 58.908 47.619 7.50 7.50 40.02 3.13
2665 4714 2.290896 TGGAAACATCGCCTGATTTCCT 60.291 45.455 13.99 0.00 40.17 3.36
2666 4715 2.755103 GGAAACATCGCCTGATTTCCTT 59.245 45.455 7.24 0.00 38.02 3.36
2667 4716 3.193479 GGAAACATCGCCTGATTTCCTTT 59.807 43.478 7.24 0.00 38.02 3.11
2668 4717 4.321974 GGAAACATCGCCTGATTTCCTTTT 60.322 41.667 7.24 0.00 38.02 2.27
2669 4718 3.855689 ACATCGCCTGATTTCCTTTTG 57.144 42.857 0.00 0.00 30.49 2.44
2670 4719 3.420893 ACATCGCCTGATTTCCTTTTGA 58.579 40.909 0.00 0.00 30.49 2.69
2671 4720 3.826157 ACATCGCCTGATTTCCTTTTGAA 59.174 39.130 0.00 0.00 30.49 2.69
2672 4721 4.082571 ACATCGCCTGATTTCCTTTTGAAG 60.083 41.667 0.00 0.00 33.63 3.02
2673 4722 3.486383 TCGCCTGATTTCCTTTTGAAGT 58.514 40.909 0.00 0.00 33.63 3.01
2674 4723 3.888930 TCGCCTGATTTCCTTTTGAAGTT 59.111 39.130 0.00 0.00 33.63 2.66
2675 4724 4.340950 TCGCCTGATTTCCTTTTGAAGTTT 59.659 37.500 0.00 0.00 33.63 2.66
2676 4725 5.049828 CGCCTGATTTCCTTTTGAAGTTTT 58.950 37.500 0.00 0.00 33.63 2.43
2677 4726 5.523552 CGCCTGATTTCCTTTTGAAGTTTTT 59.476 36.000 0.00 0.00 33.63 1.94
2678 4727 6.699642 CGCCTGATTTCCTTTTGAAGTTTTTA 59.300 34.615 0.00 0.00 33.63 1.52
2679 4728 7.384932 CGCCTGATTTCCTTTTGAAGTTTTTAT 59.615 33.333 0.00 0.00 33.63 1.40
2680 4729 9.056005 GCCTGATTTCCTTTTGAAGTTTTTATT 57.944 29.630 0.00 0.00 33.63 1.40
2698 4747 9.830294 GTTTTTATTAGTTTATGGTGTAAGCGT 57.170 29.630 0.00 0.00 36.92 5.07
2704 4753 6.903883 AGTTTATGGTGTAAGCGTTATCTG 57.096 37.500 0.00 0.00 36.92 2.90
2705 4754 6.636705 AGTTTATGGTGTAAGCGTTATCTGA 58.363 36.000 0.00 0.00 36.92 3.27
2706 4755 6.757010 AGTTTATGGTGTAAGCGTTATCTGAG 59.243 38.462 0.00 0.00 36.92 3.35
2707 4756 4.737855 ATGGTGTAAGCGTTATCTGAGT 57.262 40.909 0.00 0.00 36.92 3.41
2708 4757 4.530710 TGGTGTAAGCGTTATCTGAGTT 57.469 40.909 0.00 0.00 36.92 3.01
2709 4758 4.890088 TGGTGTAAGCGTTATCTGAGTTT 58.110 39.130 0.00 0.00 36.92 2.66
2710 4759 6.028146 TGGTGTAAGCGTTATCTGAGTTTA 57.972 37.500 0.00 0.00 36.92 2.01
2711 4760 6.457355 TGGTGTAAGCGTTATCTGAGTTTAA 58.543 36.000 0.00 0.00 36.92 1.52
2712 4761 7.101054 TGGTGTAAGCGTTATCTGAGTTTAAT 58.899 34.615 0.00 0.00 36.92 1.40
2713 4762 8.252417 TGGTGTAAGCGTTATCTGAGTTTAATA 58.748 33.333 0.00 0.00 36.92 0.98
2714 4763 9.090692 GGTGTAAGCGTTATCTGAGTTTAATAA 57.909 33.333 0.00 0.00 0.00 1.40
2717 4766 9.634300 GTAAGCGTTATCTGAGTTTAATAAAGC 57.366 33.333 0.00 0.00 39.25 3.51
2718 4767 8.494016 AAGCGTTATCTGAGTTTAATAAAGCT 57.506 30.769 8.34 8.34 45.87 3.74
2719 4768 9.595823 AAGCGTTATCTGAGTTTAATAAAGCTA 57.404 29.630 12.72 0.00 44.37 3.32
2720 4769 9.250624 AGCGTTATCTGAGTTTAATAAAGCTAG 57.749 33.333 11.30 0.00 43.78 3.42
2721 4770 9.032420 GCGTTATCTGAGTTTAATAAAGCTAGT 57.968 33.333 0.00 0.00 37.37 2.57
2729 4778 9.383519 TGAGTTTAATAAAGCTAGTCATGAAGG 57.616 33.333 0.00 0.00 0.00 3.46
2730 4779 9.384764 GAGTTTAATAAAGCTAGTCATGAAGGT 57.615 33.333 0.00 0.00 0.00 3.50
2731 4780 9.384764 AGTTTAATAAAGCTAGTCATGAAGGTC 57.615 33.333 0.00 0.00 0.00 3.85
2732 4781 9.384764 GTTTAATAAAGCTAGTCATGAAGGTCT 57.615 33.333 0.00 0.00 0.00 3.85
2733 4782 9.601217 TTTAATAAAGCTAGTCATGAAGGTCTC 57.399 33.333 0.00 0.00 0.00 3.36
2734 4783 4.479786 AAAGCTAGTCATGAAGGTCTCC 57.520 45.455 0.00 0.00 0.00 3.71
2735 4784 2.393646 AGCTAGTCATGAAGGTCTCCC 58.606 52.381 0.00 0.00 0.00 4.30
2736 4785 2.111384 GCTAGTCATGAAGGTCTCCCA 58.889 52.381 0.00 0.00 0.00 4.37
2737 4786 2.102252 GCTAGTCATGAAGGTCTCCCAG 59.898 54.545 0.00 0.00 0.00 4.45
2738 4787 2.334006 AGTCATGAAGGTCTCCCAGT 57.666 50.000 0.00 0.00 0.00 4.00
2739 4788 2.183679 AGTCATGAAGGTCTCCCAGTC 58.816 52.381 0.00 0.00 0.00 3.51
2740 4789 1.134965 GTCATGAAGGTCTCCCAGTCG 60.135 57.143 0.00 0.00 0.00 4.18
2741 4790 1.186200 CATGAAGGTCTCCCAGTCGA 58.814 55.000 0.00 0.00 0.00 4.20
2742 4791 1.550524 CATGAAGGTCTCCCAGTCGAA 59.449 52.381 0.00 0.00 0.00 3.71
2743 4792 1.712056 TGAAGGTCTCCCAGTCGAAA 58.288 50.000 0.00 0.00 0.00 3.46
2744 4793 2.043992 TGAAGGTCTCCCAGTCGAAAA 58.956 47.619 0.00 0.00 0.00 2.29
2745 4794 2.436542 TGAAGGTCTCCCAGTCGAAAAA 59.563 45.455 0.00 0.00 0.00 1.94
2798 4847 3.536075 AGGCTAGAGGAGGGATACTTC 57.464 52.381 0.00 0.00 43.16 3.01
2809 4858 4.778427 GGAGGGATACTTCGATTAAGGGAT 59.222 45.833 0.00 0.00 45.26 3.85
2849 4898 2.301583 GCTCACTCTTCTCCTTTGTCCT 59.698 50.000 0.00 0.00 0.00 3.85
2850 4899 3.244387 GCTCACTCTTCTCCTTTGTCCTT 60.244 47.826 0.00 0.00 0.00 3.36
2863 4912 5.473504 TCCTTTGTCCTTATGAAGCTTGTTC 59.526 40.000 2.10 0.00 0.00 3.18
2867 4916 2.027192 TCCTTATGAAGCTTGTTCGCCT 60.027 45.455 2.10 0.00 0.00 5.52
2900 4949 4.434545 AATGCTGGAGCTCTATGACAAT 57.565 40.909 14.64 0.00 42.66 2.71
2903 4952 6.864151 ATGCTGGAGCTCTATGACAATATA 57.136 37.500 14.64 0.00 42.66 0.86
2920 4969 9.264719 TGACAATATATTCTGATGCTTGTACTG 57.735 33.333 0.00 0.00 0.00 2.74
2921 4970 9.481340 GACAATATATTCTGATGCTTGTACTGA 57.519 33.333 0.00 0.00 0.00 3.41
2922 4971 9.836864 ACAATATATTCTGATGCTTGTACTGAA 57.163 29.630 0.00 0.00 0.00 3.02
2924 4973 8.839310 ATATATTCTGATGCTTGTACTGAACC 57.161 34.615 0.00 0.00 0.00 3.62
2925 4974 3.334583 TCTGATGCTTGTACTGAACCC 57.665 47.619 0.00 0.00 0.00 4.11
2926 4975 2.027192 TCTGATGCTTGTACTGAACCCC 60.027 50.000 0.00 0.00 0.00 4.95
2927 4976 1.702401 TGATGCTTGTACTGAACCCCA 59.298 47.619 0.00 0.00 0.00 4.96
2935 4984 4.963878 CTGAACCCCAGGGAATCG 57.036 61.111 7.25 0.00 39.23 3.34
2936 4985 1.991230 CTGAACCCCAGGGAATCGT 59.009 57.895 7.25 0.00 39.23 3.73
2937 4986 0.392998 CTGAACCCCAGGGAATCGTG 60.393 60.000 7.25 0.00 39.23 4.35
2938 4987 1.749258 GAACCCCAGGGAATCGTGC 60.749 63.158 7.25 0.00 38.96 5.34
2939 4988 3.622060 AACCCCAGGGAATCGTGCG 62.622 63.158 7.25 0.00 38.96 5.34
2940 4989 3.781307 CCCCAGGGAATCGTGCGA 61.781 66.667 7.25 0.00 37.50 5.10
2941 4990 2.505982 CCCAGGGAATCGTGCGAT 59.494 61.111 0.00 0.77 36.23 4.58
2942 4991 1.889105 CCCAGGGAATCGTGCGATG 60.889 63.158 0.00 0.00 34.70 3.84
2943 4992 1.143838 CCAGGGAATCGTGCGATGA 59.856 57.895 7.89 0.00 34.70 2.92
2944 4993 0.461870 CCAGGGAATCGTGCGATGAA 60.462 55.000 7.89 0.00 34.70 2.57
2951 5000 1.002366 ATCGTGCGATGAAGTTCTGC 58.998 50.000 6.27 6.42 32.98 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.227497 CCTCATCTCTTGCTCCCGC 60.227 63.158 0.00 0.00 0.00 6.13
14 15 0.179089 CACCTCATCTCTTGCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
17 18 3.023119 TCTCTCACCTCATCTCTTGCTC 58.977 50.000 0.00 0.00 0.00 4.26
18 19 3.025978 CTCTCTCACCTCATCTCTTGCT 58.974 50.000 0.00 0.00 0.00 3.91
19 20 3.023119 TCTCTCTCACCTCATCTCTTGC 58.977 50.000 0.00 0.00 0.00 4.01
20 21 3.065233 CGTCTCTCTCACCTCATCTCTTG 59.935 52.174 0.00 0.00 0.00 3.02
47 48 1.472082 CCATATTCACAAGTTGCGCCA 59.528 47.619 4.18 0.00 0.00 5.69
55 56 1.479389 GGGCCCCTCCATATTCACAAG 60.479 57.143 12.23 0.00 36.21 3.16
56 57 0.555769 GGGCCCCTCCATATTCACAA 59.444 55.000 12.23 0.00 36.21 3.33
59 60 1.325193 AGGGGCCCCTCCATATTCA 59.675 57.895 39.79 0.00 44.43 2.57
60 61 4.358102 AGGGGCCCCTCCATATTC 57.642 61.111 39.79 9.48 44.43 1.75
67 68 8.740906 ATATGCACATATAAAAGGGGCCCCTC 62.741 46.154 44.14 26.25 37.57 4.30
73 74 5.123820 CCGTCATATGCACATATAAAAGGGG 59.876 44.000 2.91 0.00 33.01 4.79
94 95 1.667830 CGTGCCACATCTTCACCGT 60.668 57.895 0.00 0.00 0.00 4.83
98 99 2.027653 TCAATACCGTGCCACATCTTCA 60.028 45.455 0.00 0.00 0.00 3.02
99 100 2.609459 CTCAATACCGTGCCACATCTTC 59.391 50.000 0.00 0.00 0.00 2.87
103 104 1.089481 CGCTCAATACCGTGCCACAT 61.089 55.000 0.00 0.00 0.00 3.21
133 134 1.204146 GATAGGTGGTGGCTTCTCCA 58.796 55.000 0.00 0.00 44.18 3.86
135 136 1.555075 TGTGATAGGTGGTGGCTTCTC 59.445 52.381 0.00 0.00 0.00 2.87
136 137 1.556911 CTGTGATAGGTGGTGGCTTCT 59.443 52.381 0.00 0.00 0.00 2.85
171 191 1.336440 TCACTGCATTTTTCACGGTGG 59.664 47.619 8.50 0.00 40.38 4.61
172 192 2.772568 TCACTGCATTTTTCACGGTG 57.227 45.000 0.56 0.56 41.15 4.94
183 203 0.108186 TTCGCGGAGAATCACTGCAT 60.108 50.000 6.13 0.00 39.31 3.96
198 218 1.137513 GGATATGGTGTACGCTTCGC 58.862 55.000 6.35 0.00 0.00 4.70
202 222 2.362397 CAGTGAGGATATGGTGTACGCT 59.638 50.000 6.35 0.00 0.00 5.07
214 234 2.161808 CACGTCGAGTTACAGTGAGGAT 59.838 50.000 0.00 0.00 35.03 3.24
219 239 2.223611 AGAGACACGTCGAGTTACAGTG 59.776 50.000 0.00 0.00 38.63 3.66
220 240 2.479656 GAGAGACACGTCGAGTTACAGT 59.520 50.000 0.00 0.00 34.09 3.55
222 242 2.763933 AGAGAGACACGTCGAGTTACA 58.236 47.619 0.00 0.00 34.09 2.41
224 244 2.928757 GCTAGAGAGACACGTCGAGTTA 59.071 50.000 0.00 0.00 34.09 2.24
226 246 1.337917 TGCTAGAGAGACACGTCGAGT 60.338 52.381 0.00 0.00 34.09 4.18
227 247 1.360820 TGCTAGAGAGACACGTCGAG 58.639 55.000 0.00 0.00 34.09 4.04
228 248 1.804601 TTGCTAGAGAGACACGTCGA 58.195 50.000 0.00 0.00 34.09 4.20
230 250 3.102276 CGATTTGCTAGAGAGACACGTC 58.898 50.000 0.00 0.00 0.00 4.34
231 251 2.732597 GCGATTTGCTAGAGAGACACGT 60.733 50.000 0.00 0.00 41.73 4.49
232 252 1.849219 GCGATTTGCTAGAGAGACACG 59.151 52.381 0.00 0.00 41.73 4.49
235 256 2.586258 TGGCGATTTGCTAGAGAGAC 57.414 50.000 0.00 0.00 45.43 3.36
288 313 7.034685 ACTCGTTGCAAATAGGTAAGTTTTT 57.965 32.000 0.00 0.00 0.00 1.94
290 315 6.628919 AACTCGTTGCAAATAGGTAAGTTT 57.371 33.333 0.00 0.00 0.00 2.66
291 316 6.485648 AGAAACTCGTTGCAAATAGGTAAGTT 59.514 34.615 0.00 0.94 0.00 2.66
292 317 5.995897 AGAAACTCGTTGCAAATAGGTAAGT 59.004 36.000 0.00 0.00 0.00 2.24
293 318 6.481954 AGAAACTCGTTGCAAATAGGTAAG 57.518 37.500 0.00 0.00 0.00 2.34
294 319 7.966246 TTAGAAACTCGTTGCAAATAGGTAA 57.034 32.000 0.00 0.00 0.00 2.85
295 320 7.966246 TTTAGAAACTCGTTGCAAATAGGTA 57.034 32.000 0.00 0.00 0.00 3.08
296 321 6.870971 TTTAGAAACTCGTTGCAAATAGGT 57.129 33.333 0.00 0.00 0.00 3.08
398 426 3.622060 AAGGAATCCCGTGCCGTGG 62.622 63.158 0.00 0.00 37.58 4.94
568 618 0.828677 AAGGAAGCGGCGTACCTTAT 59.171 50.000 23.94 9.11 40.37 1.73
593 644 6.583160 CGTAGATCTAGACAATACGTGAGAC 58.417 44.000 18.28 0.00 35.66 3.36
604 656 5.185249 ACCTCAAAAAGCGTAGATCTAGACA 59.815 40.000 1.64 0.00 0.00 3.41
634 686 1.078426 CCAAGGCTCCAACTACCGG 60.078 63.158 0.00 0.00 0.00 5.28
655 707 0.949105 ATTCGACGCAACCACACCTC 60.949 55.000 0.00 0.00 0.00 3.85
656 708 0.534203 AATTCGACGCAACCACACCT 60.534 50.000 0.00 0.00 0.00 4.00
657 709 0.309612 AAATTCGACGCAACCACACC 59.690 50.000 0.00 0.00 0.00 4.16
741 824 1.702299 GACGTCCACGCGAAATCTG 59.298 57.895 15.93 0.00 44.43 2.90
742 825 1.800315 CGACGTCCACGCGAAATCT 60.800 57.895 15.93 0.00 44.43 2.40
849 944 9.835315 CGTATTATATAGCAGATAAAACATGCG 57.165 33.333 0.00 0.00 44.64 4.73
867 962 5.056480 TCGAGAAGGAACGGACGTATTATA 58.944 41.667 0.00 0.00 0.00 0.98
868 963 3.879295 TCGAGAAGGAACGGACGTATTAT 59.121 43.478 0.00 0.00 0.00 1.28
870 965 2.086869 TCGAGAAGGAACGGACGTATT 58.913 47.619 0.00 0.00 0.00 1.89
871 966 1.742761 TCGAGAAGGAACGGACGTAT 58.257 50.000 0.00 0.00 0.00 3.06
909 1033 5.420409 AGCAAGTACTATTGAACTACTGCC 58.580 41.667 0.00 0.00 31.55 4.85
931 1072 5.825679 CCTATTAGGACGATCTGGATAGGAG 59.174 48.000 3.41 0.00 37.67 3.69
932 1073 5.756918 CCTATTAGGACGATCTGGATAGGA 58.243 45.833 3.41 0.00 37.67 2.94
933 1074 4.339814 GCCTATTAGGACGATCTGGATAGG 59.660 50.000 14.16 18.01 37.67 2.57
934 1075 4.339814 GGCCTATTAGGACGATCTGGATAG 59.660 50.000 14.16 0.00 37.67 2.08
937 1078 2.526432 GGCCTATTAGGACGATCTGGA 58.474 52.381 14.16 0.00 37.67 3.86
1062 1245 9.609950 GCATATTTTCTTCATCAAAGAGCTATC 57.390 33.333 0.00 0.00 44.69 2.08
1109 1293 7.254421 CGCAATAACAATTAGCACATCTAGACA 60.254 37.037 0.00 0.00 0.00 3.41
1126 1325 5.584251 TGAGTCAAATAGATGCGCAATAACA 59.416 36.000 17.11 0.00 0.00 2.41
1196 1487 6.634805 CAGCCCTATACATAACACCATAGAG 58.365 44.000 0.00 0.00 0.00 2.43
1199 1490 4.595350 TGCAGCCCTATACATAACACCATA 59.405 41.667 0.00 0.00 0.00 2.74
1202 1493 3.485463 TGCAGCCCTATACATAACACC 57.515 47.619 0.00 0.00 0.00 4.16
1205 1496 7.552687 TGCTAATAATGCAGCCCTATACATAAC 59.447 37.037 0.00 0.00 36.95 1.89
1367 1659 0.179234 TCTTGGCCTTGACGTTGTCA 59.821 50.000 3.32 0.00 41.09 3.58
1520 2040 0.106335 CGAAGATCTGCATGCCTCCT 59.894 55.000 16.68 4.18 0.00 3.69
1754 2734 4.225942 AGGGTCTTCACAAAGATCTGCATA 59.774 41.667 0.00 0.00 43.26 3.14
1778 2758 0.535335 GAGTGATGGTCTTGCCGGTA 59.465 55.000 1.90 0.00 41.21 4.02
1868 2848 3.670637 GATCAGGCGCTGCTGGTCA 62.671 63.158 18.53 0.04 31.48 4.02
2021 3001 7.758528 GGTAGACTTAATACGAACAAGACACAT 59.241 37.037 0.00 0.00 0.00 3.21
2036 3016 6.942976 TCAAACCAGATTCGGTAGACTTAAT 58.057 36.000 1.51 0.00 38.76 1.40
2047 3027 2.710377 TGGTCCATCAAACCAGATTCG 58.290 47.619 0.00 0.00 41.84 3.34
2076 3056 6.403964 CCAGATAACTGTTTCACACATCATGG 60.404 42.308 0.00 1.69 42.05 3.66
2077 3057 6.149973 ACCAGATAACTGTTTCACACATCATG 59.850 38.462 0.00 0.00 42.05 3.07
2088 3068 6.311735 ACCAAACCATACCAGATAACTGTTT 58.688 36.000 0.00 0.00 42.05 2.83
2089 3069 5.887754 ACCAAACCATACCAGATAACTGTT 58.112 37.500 0.00 0.00 42.05 3.16
2090 3070 5.514500 ACCAAACCATACCAGATAACTGT 57.486 39.130 0.00 0.00 42.05 3.55
2091 3071 7.279615 TCATACCAAACCATACCAGATAACTG 58.720 38.462 0.00 0.00 43.12 3.16
2092 3072 7.446106 TCATACCAAACCATACCAGATAACT 57.554 36.000 0.00 0.00 0.00 2.24
2093 3073 8.691661 ATTCATACCAAACCATACCAGATAAC 57.308 34.615 0.00 0.00 0.00 1.89
2096 3076 9.354673 CTTAATTCATACCAAACCATACCAGAT 57.645 33.333 0.00 0.00 0.00 2.90
2152 3146 5.123227 TCAACCGGGAGATATCAAATCAAC 58.877 41.667 6.32 0.00 0.00 3.18
2167 3161 1.134946 GGAAGCAATCATTCAACCGGG 59.865 52.381 6.32 0.00 0.00 5.73
2169 3163 2.489329 ACTGGAAGCAATCATTCAACCG 59.511 45.455 0.00 0.00 37.60 4.44
2179 3173 7.466746 TTGCTAGATAAAAACTGGAAGCAAT 57.533 32.000 2.53 0.00 42.10 3.56
2182 3176 7.568267 GTTTTGCTAGATAAAAACTGGAAGC 57.432 36.000 15.86 0.00 41.12 3.86
2198 3192 6.697395 TGTAAGATCACTGCTAGTTTTGCTA 58.303 36.000 0.00 0.00 0.00 3.49
2199 3193 5.551233 TGTAAGATCACTGCTAGTTTTGCT 58.449 37.500 0.00 0.00 0.00 3.91
2200 3194 5.862924 TGTAAGATCACTGCTAGTTTTGC 57.137 39.130 0.00 0.00 0.00 3.68
2201 3195 8.119226 GCTATTGTAAGATCACTGCTAGTTTTG 58.881 37.037 0.00 0.00 0.00 2.44
2202 3196 7.010552 CGCTATTGTAAGATCACTGCTAGTTTT 59.989 37.037 0.00 0.00 0.00 2.43
2203 3197 6.477033 CGCTATTGTAAGATCACTGCTAGTTT 59.523 38.462 0.00 0.00 0.00 2.66
2217 3211 5.856126 TCACAGAAAACCGCTATTGTAAG 57.144 39.130 0.00 0.00 0.00 2.34
2222 3216 3.505680 TGCATTCACAGAAAACCGCTATT 59.494 39.130 0.00 0.00 0.00 1.73
2223 3217 3.081061 TGCATTCACAGAAAACCGCTAT 58.919 40.909 0.00 0.00 0.00 2.97
2227 3221 6.183360 CCATTAAATGCATTCACAGAAAACCG 60.183 38.462 13.38 0.00 0.00 4.44
2230 3224 5.642919 GCCCATTAAATGCATTCACAGAAAA 59.357 36.000 13.38 0.00 0.00 2.29
2232 3226 4.467082 AGCCCATTAAATGCATTCACAGAA 59.533 37.500 13.38 3.06 0.00 3.02
2237 3233 4.202141 GCTACAGCCCATTAAATGCATTCA 60.202 41.667 13.38 2.85 34.31 2.57
2238 3234 4.038402 AGCTACAGCCCATTAAATGCATTC 59.962 41.667 13.38 0.00 43.38 2.67
2239 3235 3.962718 AGCTACAGCCCATTAAATGCATT 59.037 39.130 5.99 5.99 43.38 3.56
2240 3236 3.569491 AGCTACAGCCCATTAAATGCAT 58.431 40.909 0.00 0.00 43.38 3.96
2263 3259 3.216147 GTGATTTCACGGGAACATTGG 57.784 47.619 0.00 0.00 37.10 3.16
2283 3279 9.155975 ACATGTATAGAACTTGCAAAACTCTAG 57.844 33.333 0.00 0.00 36.87 2.43
2288 3284 9.463443 AAGAAACATGTATAGAACTTGCAAAAC 57.537 29.630 0.00 0.00 36.87 2.43
2293 3289 9.372369 AGTAGAAGAAACATGTATAGAACTTGC 57.628 33.333 0.00 0.00 36.87 4.01
2296 3292 9.877178 CCAAGTAGAAGAAACATGTATAGAACT 57.123 33.333 0.00 0.00 0.00 3.01
2297 3293 9.871238 TCCAAGTAGAAGAAACATGTATAGAAC 57.129 33.333 0.00 0.00 0.00 3.01
2300 3296 8.768955 GCATCCAAGTAGAAGAAACATGTATAG 58.231 37.037 0.00 0.00 0.00 1.31
2304 3301 5.413833 CAGCATCCAAGTAGAAGAAACATGT 59.586 40.000 0.00 0.00 0.00 3.21
2318 3315 1.068748 GTGAACACAGCAGCATCCAAG 60.069 52.381 0.00 0.00 0.00 3.61
2322 3321 0.607489 AGGGTGAACACAGCAGCATC 60.607 55.000 7.25 0.00 35.57 3.91
2338 3337 3.314541 AAACACTACGCTTACAGAGGG 57.685 47.619 0.00 0.00 43.55 4.30
2339 3338 4.056050 ACAAAACACTACGCTTACAGAGG 58.944 43.478 0.00 0.00 0.00 3.69
2340 3339 4.506654 ACACAAAACACTACGCTTACAGAG 59.493 41.667 0.00 0.00 0.00 3.35
2342 3341 4.506654 AGACACAAAACACTACGCTTACAG 59.493 41.667 0.00 0.00 0.00 2.74
2344 3343 5.399604 AAGACACAAAACACTACGCTTAC 57.600 39.130 0.00 0.00 0.00 2.34
2346 3345 4.658071 CAAAGACACAAAACACTACGCTT 58.342 39.130 0.00 0.00 0.00 4.68
2347 3346 3.486875 GCAAAGACACAAAACACTACGCT 60.487 43.478 0.00 0.00 0.00 5.07
2348 3347 2.781646 GCAAAGACACAAAACACTACGC 59.218 45.455 0.00 0.00 0.00 4.42
2350 3349 4.201783 ACGAGCAAAGACACAAAACACTAC 60.202 41.667 0.00 0.00 0.00 2.73
2351 3350 3.936453 ACGAGCAAAGACACAAAACACTA 59.064 39.130 0.00 0.00 0.00 2.74
2352 3351 2.747446 ACGAGCAAAGACACAAAACACT 59.253 40.909 0.00 0.00 0.00 3.55
2353 3352 2.845967 CACGAGCAAAGACACAAAACAC 59.154 45.455 0.00 0.00 0.00 3.32
2356 3355 2.187351 GCACGAGCAAAGACACAAAA 57.813 45.000 0.00 0.00 41.58 2.44
2398 3480 9.973661 TCCACTTTTATTCAAAGAATCATAGGA 57.026 29.630 1.36 0.00 44.40 2.94
2402 3484 8.755977 AGCATCCACTTTTATTCAAAGAATCAT 58.244 29.630 1.36 0.00 44.40 2.45
2403 3485 8.125978 AGCATCCACTTTTATTCAAAGAATCA 57.874 30.769 1.36 0.00 44.40 2.57
2404 3486 8.992835 AAGCATCCACTTTTATTCAAAGAATC 57.007 30.769 1.36 0.00 44.40 2.52
2406 3488 8.181904 AGAAGCATCCACTTTTATTCAAAGAA 57.818 30.769 1.36 0.00 44.40 2.52
2408 3490 8.734386 ACTAGAAGCATCCACTTTTATTCAAAG 58.266 33.333 0.00 0.00 46.70 2.77
2410 3492 8.635765 AACTAGAAGCATCCACTTTTATTCAA 57.364 30.769 0.00 0.00 0.00 2.69
2412 3639 8.268850 TGAACTAGAAGCATCCACTTTTATTC 57.731 34.615 0.00 0.00 0.00 1.75
2415 3642 6.769512 ACTGAACTAGAAGCATCCACTTTTA 58.230 36.000 0.00 0.00 0.00 1.52
2418 3645 4.899352 ACTGAACTAGAAGCATCCACTT 57.101 40.909 0.00 0.00 0.00 3.16
2419 3646 5.020132 AGTACTGAACTAGAAGCATCCACT 58.980 41.667 0.00 0.00 36.36 4.00
2420 3647 5.331876 AGTACTGAACTAGAAGCATCCAC 57.668 43.478 0.00 0.00 36.36 4.02
2422 3649 5.967088 TGAAGTACTGAACTAGAAGCATCC 58.033 41.667 0.00 0.00 37.50 3.51
2425 3652 7.551262 TGTTTTTGAAGTACTGAACTAGAAGCA 59.449 33.333 0.00 0.00 37.50 3.91
2426 3653 7.851472 GTGTTTTTGAAGTACTGAACTAGAAGC 59.149 37.037 0.00 0.00 37.50 3.86
2429 3656 7.037438 ACGTGTTTTTGAAGTACTGAACTAGA 58.963 34.615 0.00 0.00 37.50 2.43
2432 3659 5.873164 AGACGTGTTTTTGAAGTACTGAACT 59.127 36.000 0.00 0.00 41.49 3.01
2433 3660 5.957796 CAGACGTGTTTTTGAAGTACTGAAC 59.042 40.000 0.00 0.00 0.00 3.18
2437 3664 5.291128 CAGACAGACGTGTTTTTGAAGTACT 59.709 40.000 0.00 0.00 36.88 2.73
2440 3667 3.181510 GCAGACAGACGTGTTTTTGAAGT 60.182 43.478 0.00 0.00 36.88 3.01
2444 3671 1.594518 CCGCAGACAGACGTGTTTTTG 60.595 52.381 0.00 0.00 36.88 2.44
2448 3675 2.029073 CCCGCAGACAGACGTGTT 59.971 61.111 0.00 0.00 36.88 3.32
2462 4349 1.226018 GAAAACAGAATCGCGCCCG 60.226 57.895 0.00 0.00 0.00 6.13
2466 4359 2.898746 TGAAACGAAAACAGAATCGCG 58.101 42.857 0.00 0.00 42.61 5.87
2467 4360 5.613964 TTTTGAAACGAAAACAGAATCGC 57.386 34.783 0.00 0.00 42.61 4.58
2498 4391 9.713713 TGAACTACATACAGTAAGCATACAAAA 57.286 29.630 1.44 0.00 34.29 2.44
2499 4392 9.713713 TTGAACTACATACAGTAAGCATACAAA 57.286 29.630 1.44 0.00 34.29 2.83
2511 4404 7.331934 ACAAGTGCTATGTTGAACTACATACAG 59.668 37.037 0.00 1.61 39.39 2.74
2513 4406 7.596749 ACAAGTGCTATGTTGAACTACATAC 57.403 36.000 0.00 0.78 39.39 2.39
2526 4419 2.744202 GTCACCTCCAACAAGTGCTATG 59.256 50.000 0.00 0.00 0.00 2.23
2527 4420 2.639839 AGTCACCTCCAACAAGTGCTAT 59.360 45.455 0.00 0.00 0.00 2.97
2530 4423 0.947244 CAGTCACCTCCAACAAGTGC 59.053 55.000 0.00 0.00 0.00 4.40
2531 4424 2.620251 TCAGTCACCTCCAACAAGTG 57.380 50.000 0.00 0.00 0.00 3.16
2533 4426 3.244353 ACTCATCAGTCACCTCCAACAAG 60.244 47.826 0.00 0.00 0.00 3.16
2534 4427 2.705658 ACTCATCAGTCACCTCCAACAA 59.294 45.455 0.00 0.00 0.00 2.83
2579 4595 7.818446 AGAACCTCTATAGAAAGGAAAACGAAC 59.182 37.037 13.58 0.00 36.46 3.95
2583 4599 9.589111 CTGTAGAACCTCTATAGAAAGGAAAAC 57.411 37.037 13.58 7.44 39.62 2.43
2609 4658 4.331992 GGGTACGCCTTCTCTGTTTTAATC 59.668 45.833 0.00 0.00 34.45 1.75
2618 4667 1.305381 AGCAGGGTACGCCTTCTCT 60.305 57.895 6.27 0.00 34.45 3.10
2619 4668 1.142097 GAGCAGGGTACGCCTTCTC 59.858 63.158 6.27 9.79 34.45 2.87
2620 4669 0.905337 AAGAGCAGGGTACGCCTTCT 60.905 55.000 6.27 4.38 34.45 2.85
2621 4670 0.036294 AAAGAGCAGGGTACGCCTTC 60.036 55.000 6.27 2.37 34.45 3.46
2622 4671 0.321653 CAAAGAGCAGGGTACGCCTT 60.322 55.000 6.27 0.00 34.45 4.35
2623 4672 1.296715 CAAAGAGCAGGGTACGCCT 59.703 57.895 6.27 1.52 34.45 5.52
2624 4673 1.745489 CCAAAGAGCAGGGTACGCC 60.745 63.158 6.27 0.00 0.00 5.68
2625 4674 1.745489 CCCAAAGAGCAGGGTACGC 60.745 63.158 0.77 0.77 40.34 4.42
2626 4675 4.617875 CCCAAAGAGCAGGGTACG 57.382 61.111 0.00 0.00 40.34 3.67
2631 4680 0.961753 GTTTCCACCCAAAGAGCAGG 59.038 55.000 0.00 0.00 0.00 4.85
2632 4681 1.691196 TGTTTCCACCCAAAGAGCAG 58.309 50.000 0.00 0.00 0.00 4.24
2633 4682 2.238521 GATGTTTCCACCCAAAGAGCA 58.761 47.619 0.00 0.00 0.00 4.26
2634 4683 1.200020 CGATGTTTCCACCCAAAGAGC 59.800 52.381 0.00 0.00 0.00 4.09
2635 4684 1.200020 GCGATGTTTCCACCCAAAGAG 59.800 52.381 0.00 0.00 0.00 2.85
2636 4685 1.243902 GCGATGTTTCCACCCAAAGA 58.756 50.000 0.00 0.00 0.00 2.52
2637 4686 0.243636 GGCGATGTTTCCACCCAAAG 59.756 55.000 0.00 0.00 0.00 2.77
2638 4687 0.178975 AGGCGATGTTTCCACCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
2639 4688 0.893270 CAGGCGATGTTTCCACCCAA 60.893 55.000 0.00 0.00 0.00 4.12
2640 4689 1.303236 CAGGCGATGTTTCCACCCA 60.303 57.895 0.00 0.00 0.00 4.51
2641 4690 0.394352 ATCAGGCGATGTTTCCACCC 60.394 55.000 0.00 0.00 0.00 4.61
2642 4691 1.463674 AATCAGGCGATGTTTCCACC 58.536 50.000 0.00 0.00 30.13 4.61
2643 4692 2.159379 GGAAATCAGGCGATGTTTCCAC 60.159 50.000 18.71 4.57 42.51 4.02
2644 4693 2.091541 GGAAATCAGGCGATGTTTCCA 58.908 47.619 18.71 0.00 42.51 3.53
2645 4694 2.369394 AGGAAATCAGGCGATGTTTCC 58.631 47.619 17.33 17.33 42.87 3.13
2646 4695 4.440839 AAAGGAAATCAGGCGATGTTTC 57.559 40.909 0.00 0.00 32.62 2.78
2647 4696 4.280677 TCAAAAGGAAATCAGGCGATGTTT 59.719 37.500 0.00 0.00 30.13 2.83
2648 4697 3.826157 TCAAAAGGAAATCAGGCGATGTT 59.174 39.130 0.00 0.00 30.13 2.71
2649 4698 3.420893 TCAAAAGGAAATCAGGCGATGT 58.579 40.909 0.00 0.00 30.13 3.06
2650 4699 4.082571 ACTTCAAAAGGAAATCAGGCGATG 60.083 41.667 0.00 0.00 34.44 3.84
2651 4700 4.082125 ACTTCAAAAGGAAATCAGGCGAT 58.918 39.130 0.00 0.00 34.44 4.58
2652 4701 3.486383 ACTTCAAAAGGAAATCAGGCGA 58.514 40.909 0.00 0.00 34.44 5.54
2653 4702 3.923017 ACTTCAAAAGGAAATCAGGCG 57.077 42.857 0.00 0.00 34.44 5.52
2654 4703 6.925610 AAAAACTTCAAAAGGAAATCAGGC 57.074 33.333 0.00 0.00 34.44 4.85
2672 4721 9.830294 ACGCTTACACCATAAACTAATAAAAAC 57.170 29.630 0.00 0.00 0.00 2.43
2678 4727 9.042008 CAGATAACGCTTACACCATAAACTAAT 57.958 33.333 0.00 0.00 0.00 1.73
2679 4728 8.252417 TCAGATAACGCTTACACCATAAACTAA 58.748 33.333 0.00 0.00 0.00 2.24
2680 4729 7.774134 TCAGATAACGCTTACACCATAAACTA 58.226 34.615 0.00 0.00 0.00 2.24
2681 4730 6.636705 TCAGATAACGCTTACACCATAAACT 58.363 36.000 0.00 0.00 0.00 2.66
2682 4731 6.534079 ACTCAGATAACGCTTACACCATAAAC 59.466 38.462 0.00 0.00 0.00 2.01
2683 4732 6.636705 ACTCAGATAACGCTTACACCATAAA 58.363 36.000 0.00 0.00 0.00 1.40
2684 4733 6.216801 ACTCAGATAACGCTTACACCATAA 57.783 37.500 0.00 0.00 0.00 1.90
2685 4734 5.847111 ACTCAGATAACGCTTACACCATA 57.153 39.130 0.00 0.00 0.00 2.74
2686 4735 4.737855 ACTCAGATAACGCTTACACCAT 57.262 40.909 0.00 0.00 0.00 3.55
2687 4736 4.530710 AACTCAGATAACGCTTACACCA 57.469 40.909 0.00 0.00 0.00 4.17
2688 4737 6.956299 TTAAACTCAGATAACGCTTACACC 57.044 37.500 0.00 0.00 0.00 4.16
2691 4740 9.634300 GCTTTATTAAACTCAGATAACGCTTAC 57.366 33.333 0.00 0.00 31.61 2.34
2692 4741 9.595823 AGCTTTATTAAACTCAGATAACGCTTA 57.404 29.630 0.00 0.00 37.48 3.09
2693 4742 8.494016 AGCTTTATTAAACTCAGATAACGCTT 57.506 30.769 0.00 0.00 37.48 4.68
2694 4743 9.250624 CTAGCTTTATTAAACTCAGATAACGCT 57.749 33.333 0.00 9.99 41.10 5.07
2695 4744 9.032420 ACTAGCTTTATTAAACTCAGATAACGC 57.968 33.333 0.00 0.00 33.34 4.84
2703 4752 9.383519 CCTTCATGACTAGCTTTATTAAACTCA 57.616 33.333 0.00 0.00 0.00 3.41
2704 4753 9.384764 ACCTTCATGACTAGCTTTATTAAACTC 57.615 33.333 0.00 0.00 0.00 3.01
2705 4754 9.384764 GACCTTCATGACTAGCTTTATTAAACT 57.615 33.333 0.00 0.00 0.00 2.66
2706 4755 9.384764 AGACCTTCATGACTAGCTTTATTAAAC 57.615 33.333 0.00 0.00 0.00 2.01
2707 4756 9.601217 GAGACCTTCATGACTAGCTTTATTAAA 57.399 33.333 0.00 0.00 0.00 1.52
2708 4757 8.204836 GGAGACCTTCATGACTAGCTTTATTAA 58.795 37.037 0.00 0.00 0.00 1.40
2709 4758 7.727181 GGAGACCTTCATGACTAGCTTTATTA 58.273 38.462 0.00 0.00 0.00 0.98
2710 4759 6.587273 GGAGACCTTCATGACTAGCTTTATT 58.413 40.000 0.00 0.00 0.00 1.40
2711 4760 6.168270 GGAGACCTTCATGACTAGCTTTAT 57.832 41.667 0.00 0.00 0.00 1.40
2712 4761 5.599999 GGAGACCTTCATGACTAGCTTTA 57.400 43.478 0.00 0.00 0.00 1.85
2713 4762 4.479786 GGAGACCTTCATGACTAGCTTT 57.520 45.455 0.00 0.00 0.00 3.51
2767 4816 4.019771 CCTCCTCTAGCCTTCTCTGTTTTT 60.020 45.833 0.00 0.00 0.00 1.94
2768 4817 3.517500 CCTCCTCTAGCCTTCTCTGTTTT 59.482 47.826 0.00 0.00 0.00 2.43
2769 4818 3.103742 CCTCCTCTAGCCTTCTCTGTTT 58.896 50.000 0.00 0.00 0.00 2.83
2770 4819 2.625617 CCCTCCTCTAGCCTTCTCTGTT 60.626 54.545 0.00 0.00 0.00 3.16
2771 4820 1.063266 CCCTCCTCTAGCCTTCTCTGT 60.063 57.143 0.00 0.00 0.00 3.41
2772 4821 1.216678 TCCCTCCTCTAGCCTTCTCTG 59.783 57.143 0.00 0.00 0.00 3.35
2773 4822 1.614449 TCCCTCCTCTAGCCTTCTCT 58.386 55.000 0.00 0.00 0.00 3.10
2774 4823 2.694616 ATCCCTCCTCTAGCCTTCTC 57.305 55.000 0.00 0.00 0.00 2.87
2775 4824 3.068237 AGTATCCCTCCTCTAGCCTTCT 58.932 50.000 0.00 0.00 0.00 2.85
2776 4825 3.536075 AGTATCCCTCCTCTAGCCTTC 57.464 52.381 0.00 0.00 0.00 3.46
2777 4826 3.752542 CGAAGTATCCCTCCTCTAGCCTT 60.753 52.174 0.00 0.00 0.00 4.35
2778 4827 2.224917 CGAAGTATCCCTCCTCTAGCCT 60.225 54.545 0.00 0.00 0.00 4.58
2779 4828 2.164338 CGAAGTATCCCTCCTCTAGCC 58.836 57.143 0.00 0.00 0.00 3.93
2780 4829 3.143211 TCGAAGTATCCCTCCTCTAGC 57.857 52.381 0.00 0.00 0.00 3.42
2781 4830 6.376018 CCTTAATCGAAGTATCCCTCCTCTAG 59.624 46.154 0.00 0.00 32.74 2.43
2782 4831 6.246919 CCTTAATCGAAGTATCCCTCCTCTA 58.753 44.000 0.00 0.00 32.74 2.43
2798 4847 7.442364 TCAGAAGCAAAAGATATCCCTTAATCG 59.558 37.037 0.00 0.00 0.00 3.34
2809 4858 5.583854 GTGAGCTCATCAGAAGCAAAAGATA 59.416 40.000 21.47 0.00 39.07 1.98
2849 4898 4.127171 GGATAGGCGAACAAGCTTCATAA 58.873 43.478 0.00 0.00 37.29 1.90
2850 4899 3.133901 TGGATAGGCGAACAAGCTTCATA 59.866 43.478 0.00 0.00 37.29 2.15
2863 4912 4.046462 CAGCATTTTGAATTGGATAGGCG 58.954 43.478 0.00 0.00 0.00 5.52
2867 4916 4.957954 AGCTCCAGCATTTTGAATTGGATA 59.042 37.500 0.48 0.00 45.16 2.59
2900 4949 7.217200 GGGTTCAGTACAAGCATCAGAATATA 58.783 38.462 0.00 0.00 0.00 0.86
2903 4952 4.265073 GGGTTCAGTACAAGCATCAGAAT 58.735 43.478 0.00 0.00 0.00 2.40
2915 4964 1.134491 CGATTCCCTGGGGTTCAGTAC 60.134 57.143 14.00 0.00 41.83 2.73
2917 4966 0.840722 ACGATTCCCTGGGGTTCAGT 60.841 55.000 14.00 9.50 41.83 3.41
2918 4967 0.392998 CACGATTCCCTGGGGTTCAG 60.393 60.000 14.00 8.94 43.00 3.02
2919 4968 1.682849 CACGATTCCCTGGGGTTCA 59.317 57.895 14.00 0.00 36.47 3.18
2920 4969 1.749258 GCACGATTCCCTGGGGTTC 60.749 63.158 14.00 9.20 36.47 3.62
2921 4970 2.355115 GCACGATTCCCTGGGGTT 59.645 61.111 14.00 0.00 36.47 4.11
2922 4971 4.096003 CGCACGATTCCCTGGGGT 62.096 66.667 14.00 1.52 36.47 4.95
2923 4972 3.106986 ATCGCACGATTCCCTGGGG 62.107 63.158 14.00 2.42 0.00 4.96
2924 4973 1.889105 CATCGCACGATTCCCTGGG 60.889 63.158 6.33 6.33 31.62 4.45
2925 4974 0.461870 TTCATCGCACGATTCCCTGG 60.462 55.000 2.13 0.00 31.62 4.45
2926 4975 0.933097 CTTCATCGCACGATTCCCTG 59.067 55.000 2.13 0.00 31.62 4.45
2927 4976 0.537188 ACTTCATCGCACGATTCCCT 59.463 50.000 2.13 0.00 31.62 4.20
2928 4977 1.327764 GAACTTCATCGCACGATTCCC 59.672 52.381 2.13 0.00 31.62 3.97
2929 4978 2.029728 CAGAACTTCATCGCACGATTCC 59.970 50.000 2.13 0.00 31.62 3.01
2930 4979 2.535732 GCAGAACTTCATCGCACGATTC 60.536 50.000 2.13 0.00 31.62 2.52
2931 4980 1.394917 GCAGAACTTCATCGCACGATT 59.605 47.619 2.13 0.00 31.62 3.34
2932 4981 1.002366 GCAGAACTTCATCGCACGAT 58.998 50.000 0.00 0.00 34.81 3.73
2933 4982 0.319469 TGCAGAACTTCATCGCACGA 60.319 50.000 0.00 0.00 0.00 4.35
2934 4983 0.512518 TTGCAGAACTTCATCGCACG 59.487 50.000 0.00 0.00 31.85 5.34
2935 4984 1.800586 TCTTGCAGAACTTCATCGCAC 59.199 47.619 0.00 0.00 31.85 5.34
2936 4985 2.168326 TCTTGCAGAACTTCATCGCA 57.832 45.000 0.00 0.00 0.00 5.10
2937 4986 3.125829 TGAATCTTGCAGAACTTCATCGC 59.874 43.478 0.00 0.00 0.00 4.58
2938 4987 4.391216 ACTGAATCTTGCAGAACTTCATCG 59.609 41.667 0.00 0.00 36.86 3.84
2939 4988 5.876612 ACTGAATCTTGCAGAACTTCATC 57.123 39.130 0.00 0.00 36.86 2.92
2940 4989 5.048224 CCAACTGAATCTTGCAGAACTTCAT 60.048 40.000 0.00 0.00 36.86 2.57
2941 4990 4.276678 CCAACTGAATCTTGCAGAACTTCA 59.723 41.667 0.00 0.00 36.86 3.02
2942 4991 4.791974 CCAACTGAATCTTGCAGAACTTC 58.208 43.478 0.00 0.00 36.86 3.01
2943 4992 3.005155 GCCAACTGAATCTTGCAGAACTT 59.995 43.478 0.00 0.00 36.86 2.66
2944 4993 2.555757 GCCAACTGAATCTTGCAGAACT 59.444 45.455 0.00 0.00 36.86 3.01
2951 5000 1.508088 GGCCGCCAACTGAATCTTG 59.492 57.895 3.91 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.