Multiple sequence alignment - TraesCS6B01G147500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G147500 chr6B 100.000 3306 0 0 1 3306 148330442 148333747 0.000000e+00 6106
1 TraesCS6B01G147500 chr6B 94.439 1025 56 1 1276 2299 148083659 148084683 0.000000e+00 1576
2 TraesCS6B01G147500 chr6B 96.113 566 15 3 2745 3306 649807840 649807278 0.000000e+00 917
3 TraesCS6B01G147500 chr6B 86.450 738 71 18 553 1274 148080337 148081061 0.000000e+00 782
4 TraesCS6B01G147500 chr6B 88.200 500 57 2 55 552 41028099 41027600 2.200000e-166 595
5 TraesCS6B01G147500 chr6A 91.234 1985 115 23 612 2540 90217674 90219655 0.000000e+00 2647
6 TraesCS6B01G147500 chr6A 93.866 1288 48 16 1485 2746 90780866 90782148 0.000000e+00 1912
7 TraesCS6B01G147500 chr6A 91.461 445 38 0 1904 2348 90750804 90751248 2.180000e-171 612
8 TraesCS6B01G147500 chr6A 87.356 348 24 13 1067 1410 90781951 90782282 6.690000e-102 381
9 TraesCS6B01G147500 chr6A 91.892 259 18 3 1249 1506 90749890 90750146 3.140000e-95 359
10 TraesCS6B01G147500 chr6A 93.583 187 9 2 2552 2737 90329167 90329351 3.250000e-70 276
11 TraesCS6B01G147500 chr6A 91.935 186 14 1 1690 1874 90750293 90750478 3.270000e-65 259
12 TraesCS6B01G147500 chr6D 95.144 1627 50 14 1146 2746 74282864 74284487 0.000000e+00 2540
13 TraesCS6B01G147500 chr6D 96.619 1183 34 4 1567 2746 74261509 74260330 0.000000e+00 1958
14 TraesCS6B01G147500 chr6D 95.028 704 32 3 1839 2540 73633537 73634239 0.000000e+00 1103
15 TraesCS6B01G147500 chr6D 91.818 660 53 1 1690 2348 73787202 73787861 0.000000e+00 918
16 TraesCS6B01G147500 chr6D 94.824 483 22 3 1146 1627 74261962 74261482 0.000000e+00 750
17 TraesCS6B01G147500 chr6D 89.594 567 36 10 597 1149 74282063 74282620 0.000000e+00 699
18 TraesCS6B01G147500 chr6D 89.065 567 38 11 597 1149 74262775 74262219 0.000000e+00 682
19 TraesCS6B01G147500 chr6D 87.942 481 34 12 597 1062 73846737 73847208 2.240000e-151 545
20 TraesCS6B01G147500 chr6D 88.793 348 19 12 1067 1410 74284290 74284621 3.070000e-110 409
21 TraesCS6B01G147500 chr6D 88.506 348 21 12 1067 1410 74260528 74260196 1.430000e-108 403
22 TraesCS6B01G147500 chr6D 92.278 259 17 3 1249 1506 73786799 73787055 6.740000e-97 364
23 TraesCS6B01G147500 chr6D 95.161 186 7 1 2552 2737 73643455 73643638 3.230000e-75 292
24 TraesCS6B01G147500 chr2B 95.591 567 17 3 2745 3306 496228552 496227989 0.000000e+00 902
25 TraesCS6B01G147500 chr2D 95.230 566 20 2 2745 3306 585672894 585672332 0.000000e+00 889
26 TraesCS6B01G147500 chr2D 88.755 498 54 2 54 549 58736318 58736815 2.820000e-170 608
27 TraesCS6B01G147500 chr2D 88.330 497 56 2 55 549 566983406 566982910 2.200000e-166 595
28 TraesCS6B01G147500 chr3D 95.053 566 19 4 2745 3306 597462262 597461702 0.000000e+00 881
29 TraesCS6B01G147500 chr3D 95.341 558 16 5 2753 3306 113582043 113582594 0.000000e+00 878
30 TraesCS6B01G147500 chr3D 88.911 496 53 2 56 549 528948706 528948211 7.840000e-171 610
31 TraesCS6B01G147500 chr4D 94.700 566 24 2 2745 3306 205029324 205028761 0.000000e+00 874
32 TraesCS6B01G147500 chr4D 94.149 564 25 3 2747 3306 396968780 396968221 0.000000e+00 852
33 TraesCS6B01G147500 chr7D 94.700 566 23 2 2745 3306 95939252 95938690 0.000000e+00 872
34 TraesCS6B01G147500 chr7D 89.206 491 51 2 56 544 1955370 1954880 2.180000e-171 612
35 TraesCS6B01G147500 chr7D 88.353 498 55 3 54 549 478799443 478798947 2.200000e-166 595
36 TraesCS6B01G147500 chr5B 93.673 569 28 2 2742 3306 429434539 429435103 0.000000e+00 845
37 TraesCS6B01G147500 chr7B 88.353 498 56 2 54 549 739379916 739379419 6.110000e-167 597
38 TraesCS6B01G147500 chr7B 88.330 497 55 3 55 549 418864548 418864053 7.900000e-166 593
39 TraesCS6B01G147500 chr3B 88.353 498 56 2 54 549 708392142 708392639 6.110000e-167 597


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G147500 chr6B 148330442 148333747 3305 False 6106.00 6106 100.000000 1 3306 1 chr6B.!!$F1 3305
1 TraesCS6B01G147500 chr6B 148080337 148084683 4346 False 1179.00 1576 90.444500 553 2299 2 chr6B.!!$F2 1746
2 TraesCS6B01G147500 chr6B 649807278 649807840 562 True 917.00 917 96.113000 2745 3306 1 chr6B.!!$R2 561
3 TraesCS6B01G147500 chr6A 90217674 90219655 1981 False 2647.00 2647 91.234000 612 2540 1 chr6A.!!$F1 1928
4 TraesCS6B01G147500 chr6A 90780866 90782282 1416 False 1146.50 1912 90.611000 1067 2746 2 chr6A.!!$F4 1679
5 TraesCS6B01G147500 chr6A 90749890 90751248 1358 False 410.00 612 91.762667 1249 2348 3 chr6A.!!$F3 1099
6 TraesCS6B01G147500 chr6D 74282063 74284621 2558 False 1216.00 2540 91.177000 597 2746 3 chr6D.!!$F5 2149
7 TraesCS6B01G147500 chr6D 73633537 73634239 702 False 1103.00 1103 95.028000 1839 2540 1 chr6D.!!$F1 701
8 TraesCS6B01G147500 chr6D 74260196 74262775 2579 True 948.25 1958 92.253500 597 2746 4 chr6D.!!$R1 2149
9 TraesCS6B01G147500 chr6D 73786799 73787861 1062 False 641.00 918 92.048000 1249 2348 2 chr6D.!!$F4 1099
10 TraesCS6B01G147500 chr2B 496227989 496228552 563 True 902.00 902 95.591000 2745 3306 1 chr2B.!!$R1 561
11 TraesCS6B01G147500 chr2D 585672332 585672894 562 True 889.00 889 95.230000 2745 3306 1 chr2D.!!$R2 561
12 TraesCS6B01G147500 chr3D 597461702 597462262 560 True 881.00 881 95.053000 2745 3306 1 chr3D.!!$R2 561
13 TraesCS6B01G147500 chr3D 113582043 113582594 551 False 878.00 878 95.341000 2753 3306 1 chr3D.!!$F1 553
14 TraesCS6B01G147500 chr4D 205028761 205029324 563 True 874.00 874 94.700000 2745 3306 1 chr4D.!!$R1 561
15 TraesCS6B01G147500 chr4D 396968221 396968780 559 True 852.00 852 94.149000 2747 3306 1 chr4D.!!$R2 559
16 TraesCS6B01G147500 chr7D 95938690 95939252 562 True 872.00 872 94.700000 2745 3306 1 chr7D.!!$R2 561
17 TraesCS6B01G147500 chr5B 429434539 429435103 564 False 845.00 845 93.673000 2742 3306 1 chr5B.!!$F1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 797 0.028902 AGTCAGAAAACCAAACGCGC 59.971 50.0 5.73 0.0 0.0 6.86 F
902 923 0.105964 TCTGCACTACCACACACCAC 59.894 55.0 0.00 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 5401 1.963172 TAGCTCTTCTATGGCGACGA 58.037 50.000 0.00 0.0 0.00 4.20 R
2546 5797 3.182590 AAAGCCTCGGCAGCAGTCA 62.183 57.895 11.02 0.0 44.88 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.506500 TCTCACGTAGTCTAGGTTTTTAGG 57.493 41.667 2.41 0.00 41.61 2.69
25 26 5.064441 TCACGTAGTCTAGGTTTTTAGGC 57.936 43.478 2.41 0.00 41.61 3.93
26 27 4.768968 TCACGTAGTCTAGGTTTTTAGGCT 59.231 41.667 2.41 0.00 41.61 4.58
27 28 4.863131 CACGTAGTCTAGGTTTTTAGGCTG 59.137 45.833 0.00 0.00 41.61 4.85
28 29 3.864003 CGTAGTCTAGGTTTTTAGGCTGC 59.136 47.826 0.00 0.00 36.35 5.25
29 30 4.381718 CGTAGTCTAGGTTTTTAGGCTGCT 60.382 45.833 0.00 0.00 36.30 4.24
30 31 4.209307 AGTCTAGGTTTTTAGGCTGCTC 57.791 45.455 0.00 0.00 34.44 4.26
31 32 2.930682 GTCTAGGTTTTTAGGCTGCTCG 59.069 50.000 0.00 0.00 0.00 5.03
32 33 2.565834 TCTAGGTTTTTAGGCTGCTCGT 59.434 45.455 0.00 0.00 0.00 4.18
33 34 1.809684 AGGTTTTTAGGCTGCTCGTC 58.190 50.000 0.00 0.00 0.00 4.20
34 35 1.071699 AGGTTTTTAGGCTGCTCGTCA 59.928 47.619 0.00 0.00 0.00 4.35
35 36 2.084546 GGTTTTTAGGCTGCTCGTCAT 58.915 47.619 0.00 0.00 0.00 3.06
36 37 2.488153 GGTTTTTAGGCTGCTCGTCATT 59.512 45.455 0.00 0.00 0.00 2.57
37 38 3.057526 GGTTTTTAGGCTGCTCGTCATTT 60.058 43.478 0.00 0.00 0.00 2.32
38 39 4.546570 GTTTTTAGGCTGCTCGTCATTTT 58.453 39.130 0.00 0.00 0.00 1.82
39 40 3.829886 TTTAGGCTGCTCGTCATTTTG 57.170 42.857 0.00 0.00 0.00 2.44
40 41 1.737838 TAGGCTGCTCGTCATTTTGG 58.262 50.000 0.00 0.00 0.00 3.28
41 42 1.153958 GGCTGCTCGTCATTTTGGC 60.154 57.895 0.00 0.00 0.00 4.52
42 43 1.589716 GGCTGCTCGTCATTTTGGCT 61.590 55.000 0.00 0.00 0.00 4.75
43 44 0.242017 GCTGCTCGTCATTTTGGCTT 59.758 50.000 0.00 0.00 0.00 4.35
44 45 1.730446 GCTGCTCGTCATTTTGGCTTC 60.730 52.381 0.00 0.00 0.00 3.86
45 46 0.516877 TGCTCGTCATTTTGGCTTCG 59.483 50.000 0.00 0.00 0.00 3.79
46 47 0.179189 GCTCGTCATTTTGGCTTCGG 60.179 55.000 0.00 0.00 0.00 4.30
47 48 0.179189 CTCGTCATTTTGGCTTCGGC 60.179 55.000 0.00 0.00 40.88 5.54
48 49 1.511887 CGTCATTTTGGCTTCGGCG 60.512 57.895 0.00 0.00 42.91 6.46
49 50 1.154035 GTCATTTTGGCTTCGGCGG 60.154 57.895 7.21 0.00 42.91 6.13
50 51 2.506881 CATTTTGGCTTCGGCGGC 60.507 61.111 7.21 2.69 42.91 6.53
51 52 4.114997 ATTTTGGCTTCGGCGGCG 62.115 61.111 27.15 27.15 42.91 6.46
58 59 4.951963 CTTCGGCGGCGAGGATCC 62.952 72.222 34.89 2.48 0.00 3.36
71 72 2.053618 GGATCCATCCCTGACGAGG 58.946 63.158 6.95 0.00 41.20 4.63
72 73 1.369321 GATCCATCCCTGACGAGGC 59.631 63.158 0.00 0.00 38.17 4.70
73 74 2.105806 GATCCATCCCTGACGAGGCC 62.106 65.000 0.00 0.00 38.17 5.19
74 75 2.611964 ATCCATCCCTGACGAGGCCT 62.612 60.000 3.86 3.86 38.17 5.19
75 76 2.370445 CCATCCCTGACGAGGCCTT 61.370 63.158 6.77 0.00 38.17 4.35
76 77 1.144936 CATCCCTGACGAGGCCTTC 59.855 63.158 6.77 0.93 38.17 3.46
77 78 1.306141 ATCCCTGACGAGGCCTTCA 60.306 57.895 6.77 6.88 38.17 3.02
78 79 1.333636 ATCCCTGACGAGGCCTTCAG 61.334 60.000 22.77 22.77 38.17 3.02
79 80 2.286523 CCCTGACGAGGCCTTCAGT 61.287 63.158 25.93 18.34 37.07 3.41
80 81 1.216710 CCTGACGAGGCCTTCAGTC 59.783 63.158 25.93 24.12 37.07 3.51
81 82 1.216710 CTGACGAGGCCTTCAGTCC 59.783 63.158 21.80 10.95 34.90 3.85
82 83 1.228894 TGACGAGGCCTTCAGTCCT 60.229 57.895 24.67 0.00 32.20 3.85
83 84 0.039180 TGACGAGGCCTTCAGTCCTA 59.961 55.000 24.67 11.54 32.20 2.94
84 85 1.342076 TGACGAGGCCTTCAGTCCTAT 60.342 52.381 24.67 0.00 32.20 2.57
85 86 1.067821 GACGAGGCCTTCAGTCCTATG 59.932 57.143 19.98 0.60 31.71 2.23
86 87 0.390860 CGAGGCCTTCAGTCCTATGG 59.609 60.000 6.77 0.00 31.71 2.74
87 88 1.501582 GAGGCCTTCAGTCCTATGGT 58.498 55.000 6.77 0.00 31.71 3.55
88 89 1.840635 GAGGCCTTCAGTCCTATGGTT 59.159 52.381 6.77 0.00 31.71 3.67
89 90 1.561542 AGGCCTTCAGTCCTATGGTTG 59.438 52.381 0.00 0.00 0.00 3.77
90 91 1.408822 GGCCTTCAGTCCTATGGTTGG 60.409 57.143 0.00 0.00 0.00 3.77
91 92 1.408822 GCCTTCAGTCCTATGGTTGGG 60.409 57.143 0.00 0.00 0.00 4.12
92 93 1.212935 CCTTCAGTCCTATGGTTGGGG 59.787 57.143 0.00 0.00 0.00 4.96
93 94 1.212935 CTTCAGTCCTATGGTTGGGGG 59.787 57.143 0.00 0.00 0.00 5.40
94 95 0.120377 TCAGTCCTATGGTTGGGGGT 59.880 55.000 0.00 0.00 0.00 4.95
95 96 0.255890 CAGTCCTATGGTTGGGGGTG 59.744 60.000 0.00 0.00 0.00 4.61
96 97 0.120377 AGTCCTATGGTTGGGGGTGA 59.880 55.000 0.00 0.00 0.00 4.02
97 98 0.996583 GTCCTATGGTTGGGGGTGAA 59.003 55.000 0.00 0.00 0.00 3.18
98 99 1.569072 GTCCTATGGTTGGGGGTGAAT 59.431 52.381 0.00 0.00 0.00 2.57
99 100 2.024369 GTCCTATGGTTGGGGGTGAATT 60.024 50.000 0.00 0.00 0.00 2.17
100 101 2.657459 TCCTATGGTTGGGGGTGAATTT 59.343 45.455 0.00 0.00 0.00 1.82
101 102 2.765699 CCTATGGTTGGGGGTGAATTTG 59.234 50.000 0.00 0.00 0.00 2.32
102 103 1.655372 ATGGTTGGGGGTGAATTTGG 58.345 50.000 0.00 0.00 0.00 3.28
103 104 0.563173 TGGTTGGGGGTGAATTTGGA 59.437 50.000 0.00 0.00 0.00 3.53
104 105 1.062121 TGGTTGGGGGTGAATTTGGAA 60.062 47.619 0.00 0.00 0.00 3.53
105 106 2.050918 GGTTGGGGGTGAATTTGGAAA 58.949 47.619 0.00 0.00 0.00 3.13
106 107 2.224426 GGTTGGGGGTGAATTTGGAAAC 60.224 50.000 0.00 0.00 0.00 2.78
107 108 1.723288 TGGGGGTGAATTTGGAAACC 58.277 50.000 0.00 0.00 0.00 3.27
108 109 1.062121 TGGGGGTGAATTTGGAAACCA 60.062 47.619 0.00 0.00 34.18 3.67
109 110 2.050918 GGGGGTGAATTTGGAAACCAA 58.949 47.619 0.00 0.00 42.29 3.67
110 111 2.642311 GGGGGTGAATTTGGAAACCAAT 59.358 45.455 4.03 0.00 43.55 3.16
111 112 3.307410 GGGGGTGAATTTGGAAACCAATC 60.307 47.826 4.03 1.33 43.55 2.67
112 113 3.582647 GGGGTGAATTTGGAAACCAATCT 59.417 43.478 4.03 0.00 43.55 2.40
113 114 4.563374 GGGGTGAATTTGGAAACCAATCTG 60.563 45.833 4.03 0.00 43.55 2.90
114 115 4.040339 GGGTGAATTTGGAAACCAATCTGT 59.960 41.667 4.03 0.00 43.55 3.41
115 116 5.454613 GGGTGAATTTGGAAACCAATCTGTT 60.455 40.000 4.03 0.00 43.55 3.16
116 117 5.696270 GGTGAATTTGGAAACCAATCTGTTC 59.304 40.000 4.03 7.46 43.55 3.18
117 118 6.279882 GTGAATTTGGAAACCAATCTGTTCA 58.720 36.000 4.03 9.44 43.55 3.18
118 119 6.760770 GTGAATTTGGAAACCAATCTGTTCAA 59.239 34.615 15.39 0.00 43.55 2.69
119 120 6.985645 TGAATTTGGAAACCAATCTGTTCAAG 59.014 34.615 4.03 0.00 43.55 3.02
120 121 4.320608 TTGGAAACCAATCTGTTCAAGC 57.679 40.909 0.00 0.00 38.75 4.01
121 122 3.295093 TGGAAACCAATCTGTTCAAGCA 58.705 40.909 0.00 0.00 0.00 3.91
122 123 3.703556 TGGAAACCAATCTGTTCAAGCAA 59.296 39.130 0.00 0.00 0.00 3.91
123 124 4.202141 TGGAAACCAATCTGTTCAAGCAAG 60.202 41.667 0.00 0.00 0.00 4.01
124 125 4.301628 GAAACCAATCTGTTCAAGCAAGG 58.698 43.478 0.00 0.00 0.00 3.61
125 126 3.228188 ACCAATCTGTTCAAGCAAGGA 57.772 42.857 0.00 0.00 0.00 3.36
126 127 3.771216 ACCAATCTGTTCAAGCAAGGAT 58.229 40.909 0.00 0.00 0.00 3.24
127 128 3.508793 ACCAATCTGTTCAAGCAAGGATG 59.491 43.478 0.00 0.00 0.00 3.51
128 129 3.119245 CCAATCTGTTCAAGCAAGGATGG 60.119 47.826 0.00 0.00 0.00 3.51
129 130 1.538047 TCTGTTCAAGCAAGGATGGC 58.462 50.000 0.00 0.00 32.57 4.40
130 131 1.202915 TCTGTTCAAGCAAGGATGGCA 60.203 47.619 0.00 0.00 37.68 4.92
131 132 1.822990 CTGTTCAAGCAAGGATGGCAT 59.177 47.619 0.00 0.00 37.68 4.40
132 133 1.546923 TGTTCAAGCAAGGATGGCATG 59.453 47.619 3.81 0.00 37.68 4.06
133 134 1.134907 GTTCAAGCAAGGATGGCATGG 60.135 52.381 3.81 0.00 37.68 3.66
134 135 0.040058 TCAAGCAAGGATGGCATGGT 59.960 50.000 3.81 0.00 37.68 3.55
135 136 0.174845 CAAGCAAGGATGGCATGGTG 59.825 55.000 3.81 0.59 37.68 4.17
136 137 0.974010 AAGCAAGGATGGCATGGTGG 60.974 55.000 3.81 0.00 37.68 4.61
137 138 2.428925 GCAAGGATGGCATGGTGGG 61.429 63.158 3.81 0.00 32.79 4.61
138 139 1.759299 CAAGGATGGCATGGTGGGG 60.759 63.158 3.81 0.00 0.00 4.96
139 140 3.684369 AAGGATGGCATGGTGGGGC 62.684 63.158 3.81 0.00 0.00 5.80
153 154 4.241555 GGGCGGCATCCTCGTGAT 62.242 66.667 12.47 0.00 0.00 3.06
163 164 3.685139 ATCCTCGTGATGAACTTGTGT 57.315 42.857 0.00 0.00 30.54 3.72
164 165 3.026630 TCCTCGTGATGAACTTGTGTC 57.973 47.619 0.00 0.00 0.00 3.67
165 166 2.069273 CCTCGTGATGAACTTGTGTCC 58.931 52.381 0.00 0.00 0.00 4.02
166 167 2.289072 CCTCGTGATGAACTTGTGTCCT 60.289 50.000 0.00 0.00 0.00 3.85
167 168 2.989840 CTCGTGATGAACTTGTGTCCTC 59.010 50.000 0.00 0.00 0.00 3.71
168 169 1.721389 CGTGATGAACTTGTGTCCTCG 59.279 52.381 0.00 0.00 0.00 4.63
169 170 2.069273 GTGATGAACTTGTGTCCTCGG 58.931 52.381 0.00 0.00 0.00 4.63
170 171 1.001974 TGATGAACTTGTGTCCTCGGG 59.998 52.381 0.00 0.00 0.00 5.14
171 172 0.321653 ATGAACTTGTGTCCTCGGGC 60.322 55.000 0.00 0.00 0.00 6.13
172 173 1.371558 GAACTTGTGTCCTCGGGCT 59.628 57.895 0.00 0.00 0.00 5.19
173 174 0.670854 GAACTTGTGTCCTCGGGCTC 60.671 60.000 0.00 0.00 0.00 4.70
174 175 2.113243 AACTTGTGTCCTCGGGCTCC 62.113 60.000 0.00 0.00 0.00 4.70
193 194 2.425124 CTGTTGCGACGGCGTTTG 60.425 61.111 16.19 11.69 44.10 2.93
194 195 4.599434 TGTTGCGACGGCGTTTGC 62.599 61.111 25.07 25.07 44.10 3.68
195 196 4.307908 GTTGCGACGGCGTTTGCT 62.308 61.111 29.28 3.22 44.10 3.91
196 197 4.007940 TTGCGACGGCGTTTGCTC 62.008 61.111 29.28 11.79 44.10 4.26
199 200 3.777925 CGACGGCGTTTGCTCCAG 61.778 66.667 16.19 0.00 42.25 3.86
200 201 4.090057 GACGGCGTTTGCTCCAGC 62.090 66.667 16.19 0.00 42.25 4.85
203 204 4.090057 GGCGTTTGCTCCAGCGTC 62.090 66.667 0.00 0.00 45.83 5.19
204 205 4.430423 GCGTTTGCTCCAGCGTCG 62.430 66.667 0.00 0.44 45.83 5.12
205 206 3.777925 CGTTTGCTCCAGCGTCGG 61.778 66.667 0.00 0.00 45.83 4.79
206 207 4.090057 GTTTGCTCCAGCGTCGGC 62.090 66.667 0.00 0.00 45.83 5.54
227 228 0.741915 CGGAGCTTGAGAGGTAGTCC 59.258 60.000 0.00 0.00 32.79 3.85
228 229 1.853963 GGAGCTTGAGAGGTAGTCCA 58.146 55.000 0.00 0.00 32.79 4.02
229 230 1.754226 GGAGCTTGAGAGGTAGTCCAG 59.246 57.143 0.00 0.00 32.79 3.86
230 231 1.754226 GAGCTTGAGAGGTAGTCCAGG 59.246 57.143 0.00 0.00 32.79 4.45
231 232 1.359474 AGCTTGAGAGGTAGTCCAGGA 59.641 52.381 0.00 0.00 35.89 3.86
232 233 1.754226 GCTTGAGAGGTAGTCCAGGAG 59.246 57.143 0.00 0.00 35.89 3.69
233 234 2.886391 GCTTGAGAGGTAGTCCAGGAGT 60.886 54.545 1.29 1.29 35.89 3.85
234 235 2.516227 TGAGAGGTAGTCCAGGAGTG 57.484 55.000 7.11 0.00 35.89 3.51
235 236 1.006043 TGAGAGGTAGTCCAGGAGTGG 59.994 57.143 7.11 0.00 46.63 4.00
246 247 2.414994 CAGGAGTGGATGCAGATTGT 57.585 50.000 0.00 0.00 0.00 2.71
247 248 2.014857 CAGGAGTGGATGCAGATTGTG 58.985 52.381 0.00 0.00 0.00 3.33
248 249 1.911357 AGGAGTGGATGCAGATTGTGA 59.089 47.619 0.00 0.00 0.00 3.58
249 250 2.508716 AGGAGTGGATGCAGATTGTGAT 59.491 45.455 0.00 0.00 0.00 3.06
250 251 2.877168 GGAGTGGATGCAGATTGTGATC 59.123 50.000 0.00 0.00 0.00 2.92
251 252 3.433314 GGAGTGGATGCAGATTGTGATCT 60.433 47.826 0.00 0.00 43.43 2.75
260 261 2.467838 AGATTGTGATCTGCATCGACG 58.532 47.619 0.00 0.00 41.09 5.12
261 262 2.099756 AGATTGTGATCTGCATCGACGA 59.900 45.455 0.00 0.00 41.09 4.20
262 263 1.629013 TTGTGATCTGCATCGACGAC 58.371 50.000 0.00 0.00 0.00 4.34
263 264 0.525761 TGTGATCTGCATCGACGACA 59.474 50.000 0.00 0.00 0.00 4.35
264 265 1.134946 TGTGATCTGCATCGACGACAT 59.865 47.619 0.00 0.00 0.00 3.06
265 266 1.783711 GTGATCTGCATCGACGACATC 59.216 52.381 0.00 0.00 0.00 3.06
266 267 1.678101 TGATCTGCATCGACGACATCT 59.322 47.619 0.00 0.00 0.00 2.90
267 268 2.049959 GATCTGCATCGACGACATCTG 58.950 52.381 0.00 0.00 0.00 2.90
268 269 0.101219 TCTGCATCGACGACATCTGG 59.899 55.000 0.00 0.00 0.00 3.86
269 270 0.101219 CTGCATCGACGACATCTGGA 59.899 55.000 0.00 0.00 0.00 3.86
270 271 0.530288 TGCATCGACGACATCTGGAA 59.470 50.000 0.00 0.00 0.00 3.53
271 272 1.203928 GCATCGACGACATCTGGAAG 58.796 55.000 0.00 0.00 0.00 3.46
283 284 1.847818 TCTGGAAGACGAAACGTGTG 58.152 50.000 0.62 0.00 41.37 3.82
284 285 0.859232 CTGGAAGACGAAACGTGTGG 59.141 55.000 0.62 0.00 41.37 4.17
285 286 0.176219 TGGAAGACGAAACGTGTGGT 59.824 50.000 0.62 0.00 41.37 4.16
286 287 0.580104 GGAAGACGAAACGTGTGGTG 59.420 55.000 0.00 0.00 41.37 4.17
287 288 0.580104 GAAGACGAAACGTGTGGTGG 59.420 55.000 0.00 0.00 41.37 4.61
288 289 0.812412 AAGACGAAACGTGTGGTGGG 60.812 55.000 0.00 0.00 41.37 4.61
289 290 1.522130 GACGAAACGTGTGGTGGGT 60.522 57.895 0.00 0.00 41.37 4.51
290 291 1.078285 ACGAAACGTGTGGTGGGTT 60.078 52.632 0.00 0.00 39.18 4.11
291 292 1.091197 ACGAAACGTGTGGTGGGTTC 61.091 55.000 0.00 0.00 39.18 3.62
292 293 1.644913 GAAACGTGTGGTGGGTTCG 59.355 57.895 0.00 0.00 0.00 3.95
293 294 1.078285 AAACGTGTGGTGGGTTCGT 60.078 52.632 0.00 0.00 36.31 3.85
294 295 1.370587 AAACGTGTGGTGGGTTCGTG 61.371 55.000 0.00 0.00 35.00 4.35
295 296 2.970324 CGTGTGGTGGGTTCGTGG 60.970 66.667 0.00 0.00 0.00 4.94
296 297 2.191109 GTGTGGTGGGTTCGTGGT 59.809 61.111 0.00 0.00 0.00 4.16
297 298 1.452470 GTGTGGTGGGTTCGTGGTT 60.452 57.895 0.00 0.00 0.00 3.67
298 299 1.153127 TGTGGTGGGTTCGTGGTTC 60.153 57.895 0.00 0.00 0.00 3.62
299 300 2.109387 TGGTGGGTTCGTGGTTCG 59.891 61.111 0.00 0.00 41.41 3.95
300 301 2.109593 GGTGGGTTCGTGGTTCGT 59.890 61.111 0.00 0.00 40.80 3.85
301 302 2.248835 GGTGGGTTCGTGGTTCGTG 61.249 63.158 0.00 0.00 40.80 4.35
302 303 2.109387 TGGGTTCGTGGTTCGTGG 59.891 61.111 0.00 0.00 40.80 4.94
303 304 2.422591 GGGTTCGTGGTTCGTGGA 59.577 61.111 0.00 0.00 40.80 4.02
304 305 1.004200 GGGTTCGTGGTTCGTGGAT 60.004 57.895 0.00 0.00 40.80 3.41
305 306 1.296056 GGGTTCGTGGTTCGTGGATG 61.296 60.000 0.00 0.00 40.80 3.51
306 307 1.296056 GGTTCGTGGTTCGTGGATGG 61.296 60.000 0.00 0.00 40.80 3.51
307 308 1.669760 TTCGTGGTTCGTGGATGGC 60.670 57.895 0.00 0.00 40.80 4.40
308 309 2.358125 CGTGGTTCGTGGATGGCA 60.358 61.111 0.00 0.00 34.52 4.92
309 310 2.390599 CGTGGTTCGTGGATGGCAG 61.391 63.158 0.00 0.00 34.52 4.85
310 311 2.040544 GTGGTTCGTGGATGGCAGG 61.041 63.158 0.00 0.00 0.00 4.85
311 312 2.351276 GGTTCGTGGATGGCAGGT 59.649 61.111 0.00 0.00 0.00 4.00
312 313 1.195442 TGGTTCGTGGATGGCAGGTA 61.195 55.000 0.00 0.00 0.00 3.08
313 314 0.180406 GGTTCGTGGATGGCAGGTAT 59.820 55.000 0.00 0.00 0.00 2.73
314 315 1.299541 GTTCGTGGATGGCAGGTATG 58.700 55.000 0.00 0.00 0.00 2.39
315 316 0.180171 TTCGTGGATGGCAGGTATGG 59.820 55.000 0.00 0.00 0.00 2.74
316 317 0.980754 TCGTGGATGGCAGGTATGGT 60.981 55.000 0.00 0.00 0.00 3.55
317 318 0.107214 CGTGGATGGCAGGTATGGTT 60.107 55.000 0.00 0.00 0.00 3.67
318 319 1.681780 CGTGGATGGCAGGTATGGTTT 60.682 52.381 0.00 0.00 0.00 3.27
319 320 1.750778 GTGGATGGCAGGTATGGTTTG 59.249 52.381 0.00 0.00 0.00 2.93
320 321 0.746659 GGATGGCAGGTATGGTTTGC 59.253 55.000 0.00 0.00 37.11 3.68
321 322 1.686115 GGATGGCAGGTATGGTTTGCT 60.686 52.381 0.00 0.00 37.93 3.91
322 323 1.678101 GATGGCAGGTATGGTTTGCTC 59.322 52.381 0.00 0.00 37.93 4.26
323 324 0.323360 TGGCAGGTATGGTTTGCTCC 60.323 55.000 0.00 0.00 37.93 4.70
324 325 0.034089 GGCAGGTATGGTTTGCTCCT 60.034 55.000 0.00 0.00 37.93 3.69
325 326 1.616994 GGCAGGTATGGTTTGCTCCTT 60.617 52.381 0.00 0.00 37.93 3.36
326 327 2.171003 GCAGGTATGGTTTGCTCCTTT 58.829 47.619 0.00 0.00 35.05 3.11
327 328 2.094545 GCAGGTATGGTTTGCTCCTTTG 60.095 50.000 0.00 0.00 35.05 2.77
328 329 2.493278 CAGGTATGGTTTGCTCCTTTGG 59.507 50.000 0.00 0.00 0.00 3.28
329 330 1.204704 GGTATGGTTTGCTCCTTTGGC 59.795 52.381 0.00 0.00 0.00 4.52
330 331 1.135402 GTATGGTTTGCTCCTTTGGCG 60.135 52.381 0.00 0.00 0.00 5.69
331 332 0.827507 ATGGTTTGCTCCTTTGGCGT 60.828 50.000 0.00 0.00 0.00 5.68
332 333 1.285950 GGTTTGCTCCTTTGGCGTC 59.714 57.895 0.00 0.00 0.00 5.19
333 334 1.172812 GGTTTGCTCCTTTGGCGTCT 61.173 55.000 0.00 0.00 0.00 4.18
334 335 0.668535 GTTTGCTCCTTTGGCGTCTT 59.331 50.000 0.00 0.00 0.00 3.01
335 336 1.877443 GTTTGCTCCTTTGGCGTCTTA 59.123 47.619 0.00 0.00 0.00 2.10
336 337 1.808411 TTGCTCCTTTGGCGTCTTAG 58.192 50.000 0.00 0.00 0.00 2.18
337 338 0.685097 TGCTCCTTTGGCGTCTTAGT 59.315 50.000 0.00 0.00 0.00 2.24
338 339 1.337823 TGCTCCTTTGGCGTCTTAGTC 60.338 52.381 0.00 0.00 0.00 2.59
339 340 1.630148 CTCCTTTGGCGTCTTAGTCG 58.370 55.000 0.00 0.00 0.00 4.18
340 341 0.963962 TCCTTTGGCGTCTTAGTCGT 59.036 50.000 0.68 0.00 0.00 4.34
341 342 1.068474 CCTTTGGCGTCTTAGTCGTG 58.932 55.000 0.68 0.00 0.00 4.35
342 343 1.068474 CTTTGGCGTCTTAGTCGTGG 58.932 55.000 0.68 0.00 0.00 4.94
343 344 0.390124 TTTGGCGTCTTAGTCGTGGT 59.610 50.000 0.68 0.00 0.00 4.16
344 345 0.319211 TTGGCGTCTTAGTCGTGGTG 60.319 55.000 0.68 0.00 0.00 4.17
345 346 1.445582 GGCGTCTTAGTCGTGGTGG 60.446 63.158 0.68 0.00 0.00 4.61
346 347 1.582968 GCGTCTTAGTCGTGGTGGA 59.417 57.895 0.68 0.00 0.00 4.02
347 348 0.456312 GCGTCTTAGTCGTGGTGGAG 60.456 60.000 0.68 0.00 0.00 3.86
348 349 0.879765 CGTCTTAGTCGTGGTGGAGT 59.120 55.000 0.00 0.00 0.00 3.85
349 350 1.401148 CGTCTTAGTCGTGGTGGAGTG 60.401 57.143 0.00 0.00 0.00 3.51
350 351 0.601558 TCTTAGTCGTGGTGGAGTGC 59.398 55.000 0.00 0.00 0.00 4.40
351 352 0.389948 CTTAGTCGTGGTGGAGTGCC 60.390 60.000 0.00 0.00 0.00 5.01
352 353 1.116536 TTAGTCGTGGTGGAGTGCCA 61.117 55.000 0.00 0.00 43.47 4.92
371 372 2.819115 CAGATCTGGAGTTCGATGGTG 58.181 52.381 15.38 0.00 0.00 4.17
372 373 2.167281 CAGATCTGGAGTTCGATGGTGT 59.833 50.000 15.38 0.00 0.00 4.16
373 374 2.167281 AGATCTGGAGTTCGATGGTGTG 59.833 50.000 0.00 0.00 0.00 3.82
374 375 1.338107 TCTGGAGTTCGATGGTGTGT 58.662 50.000 0.00 0.00 0.00 3.72
375 376 1.272490 TCTGGAGTTCGATGGTGTGTC 59.728 52.381 0.00 0.00 0.00 3.67
376 377 1.273606 CTGGAGTTCGATGGTGTGTCT 59.726 52.381 0.00 0.00 0.00 3.41
377 378 1.000843 TGGAGTTCGATGGTGTGTCTG 59.999 52.381 0.00 0.00 0.00 3.51
378 379 1.272490 GGAGTTCGATGGTGTGTCTGA 59.728 52.381 0.00 0.00 0.00 3.27
379 380 2.600731 GAGTTCGATGGTGTGTCTGAG 58.399 52.381 0.00 0.00 0.00 3.35
380 381 1.273606 AGTTCGATGGTGTGTCTGAGG 59.726 52.381 0.00 0.00 0.00 3.86
381 382 1.000955 GTTCGATGGTGTGTCTGAGGT 59.999 52.381 0.00 0.00 0.00 3.85
382 383 0.603065 TCGATGGTGTGTCTGAGGTG 59.397 55.000 0.00 0.00 0.00 4.00
383 384 0.318441 CGATGGTGTGTCTGAGGTGT 59.682 55.000 0.00 0.00 0.00 4.16
384 385 1.270305 CGATGGTGTGTCTGAGGTGTT 60.270 52.381 0.00 0.00 0.00 3.32
385 386 2.146342 GATGGTGTGTCTGAGGTGTTG 58.854 52.381 0.00 0.00 0.00 3.33
386 387 0.463654 TGGTGTGTCTGAGGTGTTGC 60.464 55.000 0.00 0.00 0.00 4.17
387 388 0.179045 GGTGTGTCTGAGGTGTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
388 389 1.221414 GTGTGTCTGAGGTGTTGCTC 58.779 55.000 0.00 0.00 0.00 4.26
389 390 0.106708 TGTGTCTGAGGTGTTGCTCC 59.893 55.000 0.00 0.00 0.00 4.70
390 391 0.946221 GTGTCTGAGGTGTTGCTCCG 60.946 60.000 0.00 0.00 0.00 4.63
391 392 1.374758 GTCTGAGGTGTTGCTCCGG 60.375 63.158 0.00 0.00 0.00 5.14
392 393 1.837051 TCTGAGGTGTTGCTCCGGT 60.837 57.895 0.00 0.00 0.00 5.28
393 394 1.374758 CTGAGGTGTTGCTCCGGTC 60.375 63.158 0.00 0.00 0.00 4.79
394 395 1.821061 CTGAGGTGTTGCTCCGGTCT 61.821 60.000 0.00 0.00 0.00 3.85
395 396 1.374758 GAGGTGTTGCTCCGGTCTG 60.375 63.158 0.00 0.00 0.00 3.51
396 397 1.816863 GAGGTGTTGCTCCGGTCTGA 61.817 60.000 0.00 0.00 0.00 3.27
397 398 1.194781 AGGTGTTGCTCCGGTCTGAT 61.195 55.000 0.00 0.00 0.00 2.90
398 399 0.321653 GGTGTTGCTCCGGTCTGATT 60.322 55.000 0.00 0.00 0.00 2.57
399 400 1.079503 GTGTTGCTCCGGTCTGATTC 58.920 55.000 0.00 0.00 0.00 2.52
400 401 0.389817 TGTTGCTCCGGTCTGATTCG 60.390 55.000 0.00 0.00 0.00 3.34
401 402 0.389948 GTTGCTCCGGTCTGATTCGT 60.390 55.000 0.00 0.00 0.00 3.85
402 403 0.320374 TTGCTCCGGTCTGATTCGTT 59.680 50.000 0.00 0.00 0.00 3.85
403 404 0.108804 TGCTCCGGTCTGATTCGTTC 60.109 55.000 0.00 0.00 0.00 3.95
404 405 0.108804 GCTCCGGTCTGATTCGTTCA 60.109 55.000 0.00 0.00 0.00 3.18
405 406 1.671850 GCTCCGGTCTGATTCGTTCAA 60.672 52.381 0.00 0.00 32.78 2.69
406 407 2.893637 CTCCGGTCTGATTCGTTCAAT 58.106 47.619 0.00 0.00 32.78 2.57
407 408 2.604914 CTCCGGTCTGATTCGTTCAATG 59.395 50.000 0.00 0.00 32.78 2.82
408 409 1.665679 CCGGTCTGATTCGTTCAATGG 59.334 52.381 0.00 0.00 32.78 3.16
409 410 1.062587 CGGTCTGATTCGTTCAATGGC 59.937 52.381 0.00 0.00 32.78 4.40
410 411 2.083774 GGTCTGATTCGTTCAATGGCA 58.916 47.619 0.00 0.00 32.78 4.92
411 412 2.487762 GGTCTGATTCGTTCAATGGCAA 59.512 45.455 0.00 0.00 32.78 4.52
412 413 3.129287 GGTCTGATTCGTTCAATGGCAAT 59.871 43.478 0.00 0.00 32.78 3.56
413 414 4.335315 GGTCTGATTCGTTCAATGGCAATA 59.665 41.667 0.00 0.00 32.78 1.90
414 415 5.504665 GGTCTGATTCGTTCAATGGCAATAG 60.505 44.000 0.00 0.00 32.78 1.73
415 416 4.035558 TCTGATTCGTTCAATGGCAATAGC 59.964 41.667 0.00 0.00 35.08 2.97
416 417 3.947196 TGATTCGTTCAATGGCAATAGCT 59.053 39.130 0.00 0.00 41.70 3.32
417 418 4.398988 TGATTCGTTCAATGGCAATAGCTT 59.601 37.500 0.00 0.00 41.70 3.74
418 419 4.355543 TTCGTTCAATGGCAATAGCTTC 57.644 40.909 0.00 0.00 41.70 3.86
419 420 3.342719 TCGTTCAATGGCAATAGCTTCA 58.657 40.909 0.00 0.00 41.70 3.02
420 421 3.126858 TCGTTCAATGGCAATAGCTTCAC 59.873 43.478 0.00 0.00 41.70 3.18
421 422 3.127548 CGTTCAATGGCAATAGCTTCACT 59.872 43.478 0.00 0.00 41.70 3.41
422 423 4.379813 CGTTCAATGGCAATAGCTTCACTT 60.380 41.667 0.00 0.00 41.70 3.16
423 424 5.473039 GTTCAATGGCAATAGCTTCACTTT 58.527 37.500 0.00 0.00 41.70 2.66
424 425 5.726980 TCAATGGCAATAGCTTCACTTTT 57.273 34.783 0.00 0.00 41.70 2.27
425 426 5.472148 TCAATGGCAATAGCTTCACTTTTG 58.528 37.500 0.00 0.00 39.53 2.44
426 427 3.940209 TGGCAATAGCTTCACTTTTGG 57.060 42.857 0.00 0.00 37.68 3.28
427 428 3.230134 TGGCAATAGCTTCACTTTTGGT 58.770 40.909 0.00 0.00 37.68 3.67
428 429 3.005684 TGGCAATAGCTTCACTTTTGGTG 59.994 43.478 0.00 0.00 43.09 4.17
429 430 3.255642 GGCAATAGCTTCACTTTTGGTGA 59.744 43.478 0.00 0.00 45.62 4.02
430 431 4.616835 GGCAATAGCTTCACTTTTGGTGAG 60.617 45.833 0.00 0.00 45.62 3.51
442 443 6.530019 ACTTTTGGTGAGCCATATTAAAGG 57.470 37.500 11.07 0.00 45.56 3.11
443 444 6.016555 ACTTTTGGTGAGCCATATTAAAGGT 58.983 36.000 11.07 0.00 45.56 3.50
444 445 6.152831 ACTTTTGGTGAGCCATATTAAAGGTC 59.847 38.462 11.07 0.00 45.56 3.85
445 446 4.164843 TGGTGAGCCATATTAAAGGTCC 57.835 45.455 0.00 0.00 40.46 4.46
446 447 3.785887 TGGTGAGCCATATTAAAGGTCCT 59.214 43.478 0.00 0.00 40.46 3.85
447 448 4.141482 TGGTGAGCCATATTAAAGGTCCTC 60.141 45.833 0.00 0.00 40.46 3.71
448 449 4.141482 GGTGAGCCATATTAAAGGTCCTCA 60.141 45.833 0.00 0.00 34.09 3.86
449 450 5.437060 GTGAGCCATATTAAAGGTCCTCAA 58.563 41.667 0.00 0.00 29.66 3.02
450 451 5.885912 GTGAGCCATATTAAAGGTCCTCAAA 59.114 40.000 0.00 0.00 29.66 2.69
451 452 6.038714 GTGAGCCATATTAAAGGTCCTCAAAG 59.961 42.308 0.00 0.00 29.66 2.77
452 453 4.889995 AGCCATATTAAAGGTCCTCAAAGC 59.110 41.667 0.00 0.00 0.00 3.51
453 454 4.889995 GCCATATTAAAGGTCCTCAAAGCT 59.110 41.667 0.00 0.00 0.00 3.74
454 455 6.062095 GCCATATTAAAGGTCCTCAAAGCTA 58.938 40.000 0.00 0.00 0.00 3.32
455 456 6.717084 GCCATATTAAAGGTCCTCAAAGCTAT 59.283 38.462 0.00 0.00 0.00 2.97
456 457 7.883311 GCCATATTAAAGGTCCTCAAAGCTATA 59.117 37.037 0.00 0.00 0.00 1.31
457 458 9.965902 CCATATTAAAGGTCCTCAAAGCTATAT 57.034 33.333 0.00 0.00 0.00 0.86
463 464 6.293004 AGGTCCTCAAAGCTATATATCAGC 57.707 41.667 0.00 1.78 39.41 4.26
464 465 5.105554 AGGTCCTCAAAGCTATATATCAGCG 60.106 44.000 0.00 0.00 43.97 5.18
465 466 5.105716 GGTCCTCAAAGCTATATATCAGCGA 60.106 44.000 0.00 0.00 43.97 4.93
466 467 6.406400 GGTCCTCAAAGCTATATATCAGCGAT 60.406 42.308 0.00 0.00 43.97 4.58
467 468 6.475076 GTCCTCAAAGCTATATATCAGCGATG 59.525 42.308 0.00 0.00 43.97 3.84
468 469 5.752472 CCTCAAAGCTATATATCAGCGATGG 59.248 44.000 0.00 0.00 43.97 3.51
469 470 6.406288 CCTCAAAGCTATATATCAGCGATGGA 60.406 42.308 0.00 0.00 43.97 3.41
470 471 6.567959 TCAAAGCTATATATCAGCGATGGAG 58.432 40.000 0.00 0.00 43.97 3.86
471 472 4.582701 AGCTATATATCAGCGATGGAGC 57.417 45.455 0.00 0.86 43.97 4.70
472 473 3.320541 AGCTATATATCAGCGATGGAGCC 59.679 47.826 0.00 0.00 43.97 4.70
473 474 2.879002 ATATATCAGCGATGGAGCCG 57.121 50.000 0.00 0.00 38.01 5.52
480 481 2.813474 CGATGGAGCCGCGTCAAA 60.813 61.111 4.92 0.00 0.00 2.69
481 482 2.785258 GATGGAGCCGCGTCAAAC 59.215 61.111 4.92 0.00 0.00 2.93
482 483 1.741770 GATGGAGCCGCGTCAAACT 60.742 57.895 4.92 0.00 0.00 2.66
483 484 1.298859 GATGGAGCCGCGTCAAACTT 61.299 55.000 4.92 0.00 0.00 2.66
484 485 0.889186 ATGGAGCCGCGTCAAACTTT 60.889 50.000 4.92 0.00 0.00 2.66
485 486 1.082104 GGAGCCGCGTCAAACTTTG 60.082 57.895 4.92 0.00 0.00 2.77
486 487 1.082104 GAGCCGCGTCAAACTTTGG 60.082 57.895 4.92 0.00 0.00 3.28
487 488 1.782028 GAGCCGCGTCAAACTTTGGT 61.782 55.000 4.92 0.00 0.00 3.67
488 489 1.657181 GCCGCGTCAAACTTTGGTG 60.657 57.895 4.92 0.00 0.00 4.17
489 490 2.018544 CCGCGTCAAACTTTGGTGA 58.981 52.632 4.92 0.00 0.00 4.02
490 491 0.041312 CCGCGTCAAACTTTGGTGAG 60.041 55.000 4.92 0.00 0.00 3.51
491 492 0.934496 CGCGTCAAACTTTGGTGAGA 59.066 50.000 0.00 0.00 0.00 3.27
492 493 1.329292 CGCGTCAAACTTTGGTGAGAA 59.671 47.619 0.00 0.00 0.00 2.87
493 494 2.716398 GCGTCAAACTTTGGTGAGAAC 58.284 47.619 1.62 0.00 0.00 3.01
494 495 2.849502 GCGTCAAACTTTGGTGAGAACG 60.850 50.000 1.62 4.62 0.00 3.95
495 496 2.350498 CGTCAAACTTTGGTGAGAACGT 59.650 45.455 1.62 0.00 0.00 3.99
496 497 3.680789 GTCAAACTTTGGTGAGAACGTG 58.319 45.455 1.62 0.00 0.00 4.49
497 498 3.372822 GTCAAACTTTGGTGAGAACGTGA 59.627 43.478 1.62 0.00 0.00 4.35
498 499 4.035208 GTCAAACTTTGGTGAGAACGTGAT 59.965 41.667 1.62 0.00 0.00 3.06
499 500 4.272504 TCAAACTTTGGTGAGAACGTGATC 59.727 41.667 1.62 0.00 0.00 2.92
500 501 2.767505 ACTTTGGTGAGAACGTGATCC 58.232 47.619 0.00 0.00 0.00 3.36
501 502 1.726791 CTTTGGTGAGAACGTGATCCG 59.273 52.381 0.00 2.55 44.03 4.18
528 529 3.940209 TTTTCTTTGGTGGCTGCTATG 57.060 42.857 0.00 0.00 0.00 2.23
529 530 2.877097 TTCTTTGGTGGCTGCTATGA 57.123 45.000 0.00 0.00 0.00 2.15
530 531 3.370840 TTCTTTGGTGGCTGCTATGAT 57.629 42.857 0.00 0.00 0.00 2.45
531 532 2.646930 TCTTTGGTGGCTGCTATGATG 58.353 47.619 0.00 0.00 0.00 3.07
532 533 2.239402 TCTTTGGTGGCTGCTATGATGA 59.761 45.455 0.00 0.00 0.00 2.92
533 534 3.117776 TCTTTGGTGGCTGCTATGATGAT 60.118 43.478 0.00 0.00 0.00 2.45
534 535 2.265589 TGGTGGCTGCTATGATGATG 57.734 50.000 0.00 0.00 0.00 3.07
535 536 0.879765 GGTGGCTGCTATGATGATGC 59.120 55.000 0.00 0.00 0.00 3.91
536 537 0.879765 GTGGCTGCTATGATGATGCC 59.120 55.000 0.00 0.00 40.62 4.40
537 538 0.604511 TGGCTGCTATGATGATGCCG 60.605 55.000 0.00 0.00 42.87 5.69
538 539 0.321034 GGCTGCTATGATGATGCCGA 60.321 55.000 0.00 0.00 0.00 5.54
539 540 1.077123 GCTGCTATGATGATGCCGAG 58.923 55.000 0.00 0.00 0.00 4.63
540 541 1.723220 CTGCTATGATGATGCCGAGG 58.277 55.000 0.00 0.00 0.00 4.63
541 542 0.321034 TGCTATGATGATGCCGAGGC 60.321 55.000 7.26 7.26 42.35 4.70
551 552 2.895680 GCCGAGGCAGATGACAGA 59.104 61.111 9.58 0.00 41.49 3.41
552 553 1.445095 GCCGAGGCAGATGACAGAT 59.555 57.895 9.58 0.00 41.49 2.90
553 554 0.879400 GCCGAGGCAGATGACAGATG 60.879 60.000 9.58 0.00 41.49 2.90
554 555 0.749049 CCGAGGCAGATGACAGATGA 59.251 55.000 0.00 0.00 0.00 2.92
595 596 6.564328 GGCTTCAAATTGTACTTATCCCAAG 58.436 40.000 0.00 0.00 0.00 3.61
635 642 5.940595 ACATGTAACTTGTCTCGTACTCTC 58.059 41.667 0.00 0.00 0.00 3.20
636 643 5.706369 ACATGTAACTTGTCTCGTACTCTCT 59.294 40.000 0.00 0.00 0.00 3.10
637 644 6.877855 ACATGTAACTTGTCTCGTACTCTCTA 59.122 38.462 0.00 0.00 0.00 2.43
641 648 9.043079 TGTAACTTGTCTCGTACTCTCTATATG 57.957 37.037 0.00 0.00 0.00 1.78
658 665 8.458573 CTCTATATGTATCCCATACAGAGTCC 57.541 42.308 8.71 0.00 46.12 3.85
678 686 4.197750 TCCGATCGGAAGCCTATCTATAC 58.802 47.826 33.96 0.00 42.05 1.47
754 772 1.079127 GAGGTGTGTATGCGCCACT 60.079 57.895 14.88 0.00 41.26 4.00
778 796 2.542595 ACTAGTCAGAAAACCAAACGCG 59.457 45.455 3.53 3.53 0.00 6.01
779 797 0.028902 AGTCAGAAAACCAAACGCGC 59.971 50.000 5.73 0.00 0.00 6.86
780 798 0.248296 GTCAGAAAACCAAACGCGCA 60.248 50.000 5.73 0.00 0.00 6.09
787 806 1.729470 AACCAAACGCGCATCAACCA 61.729 50.000 5.73 0.00 0.00 3.67
805 826 5.185056 TCAACCAAACATACTCTCTCGATCA 59.815 40.000 0.00 0.00 0.00 2.92
809 830 6.321435 ACCAAACATACTCTCTCGATCATACA 59.679 38.462 0.00 0.00 0.00 2.29
896 917 2.656646 CCGCTCTGCACTACCACA 59.343 61.111 0.00 0.00 0.00 4.17
900 921 0.951040 GCTCTGCACTACCACACACC 60.951 60.000 0.00 0.00 0.00 4.16
901 922 0.392706 CTCTGCACTACCACACACCA 59.607 55.000 0.00 0.00 0.00 4.17
902 923 0.105964 TCTGCACTACCACACACCAC 59.894 55.000 0.00 0.00 0.00 4.16
904 925 1.959226 GCACTACCACACACCACGG 60.959 63.158 0.00 0.00 0.00 4.94
906 927 0.319555 CACTACCACACACCACGGAG 60.320 60.000 0.00 0.00 0.00 4.63
909 930 1.183030 TACCACACACCACGGAGGAG 61.183 60.000 2.94 0.00 41.22 3.69
924 945 2.053277 GGAGACCACGGAGGAGACC 61.053 68.421 2.94 0.00 41.22 3.85
1020 1041 2.299993 TGCGATCTCTTGGTGATGTC 57.700 50.000 0.00 0.00 0.00 3.06
1263 1549 1.964223 TCGGAGTTGCTTCTCTTGAGT 59.036 47.619 8.19 0.00 35.11 3.41
1388 4270 2.889045 CTCCGATGTAGGTTTCCCGATA 59.111 50.000 0.00 0.00 35.12 2.92
1497 4385 1.076906 AGCTCACCGGTCAGTACCT 59.923 57.895 7.53 0.00 44.35 3.08
1522 4420 8.196802 TGTATTAATGATGTCAAGCTACACAC 57.803 34.615 0.00 0.00 30.75 3.82
1551 4449 5.582269 ACGTACATTGCATGCCTATCATATC 59.418 40.000 16.68 0.00 33.19 1.63
1849 4780 5.378230 TGGATATGATTTTCAGCAGGACT 57.622 39.130 0.00 0.00 0.00 3.85
1888 5109 4.142609 TCCTCTTGATGCATGGACTAAC 57.857 45.455 2.46 0.00 0.00 2.34
2023 5251 0.107508 GCAGCCTGATAGCTTCCACA 60.108 55.000 0.00 0.00 42.61 4.17
2173 5401 5.669164 TCCTAAAAGTTTGTGCTTTTGGT 57.331 34.783 12.36 0.00 45.12 3.67
2197 5425 1.069204 CGCCATAGAAGAGCTAAGCCA 59.931 52.381 0.00 0.00 31.93 4.75
2546 5797 0.109342 CCGGCCAGATCCTTGCTTAT 59.891 55.000 2.24 0.00 0.00 1.73
2653 5904 5.367945 TCCTACCTCTCTCTCTTTCTCTC 57.632 47.826 0.00 0.00 0.00 3.20
2769 6022 2.363276 ACGGGCGAGGGTGATGTA 60.363 61.111 0.00 0.00 0.00 2.29
3095 6355 3.328637 GGTAACCTTTGGTGTTAGGAGGA 59.671 47.826 0.00 0.00 35.34 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.105997 GCCTAAAAACCTAGACTACGTGAGA 60.106 44.000 0.00 0.00 0.00 3.27
3 4 4.768968 AGCCTAAAAACCTAGACTACGTGA 59.231 41.667 0.00 0.00 0.00 4.35
4 5 4.863131 CAGCCTAAAAACCTAGACTACGTG 59.137 45.833 0.00 0.00 0.00 4.49
5 6 4.620097 GCAGCCTAAAAACCTAGACTACGT 60.620 45.833 0.00 0.00 0.00 3.57
6 7 3.864003 GCAGCCTAAAAACCTAGACTACG 59.136 47.826 0.00 0.00 0.00 3.51
7 8 5.087391 AGCAGCCTAAAAACCTAGACTAC 57.913 43.478 0.00 0.00 0.00 2.73
8 9 4.142227 CGAGCAGCCTAAAAACCTAGACTA 60.142 45.833 0.00 0.00 0.00 2.59
9 10 3.368531 CGAGCAGCCTAAAAACCTAGACT 60.369 47.826 0.00 0.00 0.00 3.24
10 11 2.930682 CGAGCAGCCTAAAAACCTAGAC 59.069 50.000 0.00 0.00 0.00 2.59
11 12 2.565834 ACGAGCAGCCTAAAAACCTAGA 59.434 45.455 0.00 0.00 0.00 2.43
12 13 2.930682 GACGAGCAGCCTAAAAACCTAG 59.069 50.000 0.00 0.00 0.00 3.02
13 14 2.300723 TGACGAGCAGCCTAAAAACCTA 59.699 45.455 0.00 0.00 0.00 3.08
14 15 1.071699 TGACGAGCAGCCTAAAAACCT 59.928 47.619 0.00 0.00 0.00 3.50
15 16 1.519408 TGACGAGCAGCCTAAAAACC 58.481 50.000 0.00 0.00 0.00 3.27
16 17 3.831715 AATGACGAGCAGCCTAAAAAC 57.168 42.857 0.00 0.00 0.00 2.43
17 18 4.545610 CAAAATGACGAGCAGCCTAAAAA 58.454 39.130 0.00 0.00 0.00 1.94
18 19 3.057596 CCAAAATGACGAGCAGCCTAAAA 60.058 43.478 0.00 0.00 0.00 1.52
19 20 2.487762 CCAAAATGACGAGCAGCCTAAA 59.512 45.455 0.00 0.00 0.00 1.85
20 21 2.083774 CCAAAATGACGAGCAGCCTAA 58.916 47.619 0.00 0.00 0.00 2.69
21 22 1.737838 CCAAAATGACGAGCAGCCTA 58.262 50.000 0.00 0.00 0.00 3.93
22 23 1.589716 GCCAAAATGACGAGCAGCCT 61.590 55.000 0.00 0.00 0.00 4.58
23 24 1.153958 GCCAAAATGACGAGCAGCC 60.154 57.895 0.00 0.00 0.00 4.85
24 25 0.242017 AAGCCAAAATGACGAGCAGC 59.758 50.000 0.00 0.00 0.00 5.25
25 26 1.464687 CGAAGCCAAAATGACGAGCAG 60.465 52.381 0.00 0.00 0.00 4.24
26 27 0.516877 CGAAGCCAAAATGACGAGCA 59.483 50.000 0.00 0.00 0.00 4.26
27 28 0.179189 CCGAAGCCAAAATGACGAGC 60.179 55.000 0.00 0.00 0.00 5.03
28 29 0.179189 GCCGAAGCCAAAATGACGAG 60.179 55.000 0.00 0.00 0.00 4.18
29 30 1.873165 GCCGAAGCCAAAATGACGA 59.127 52.632 0.00 0.00 0.00 4.20
30 31 1.511887 CGCCGAAGCCAAAATGACG 60.512 57.895 0.00 0.00 34.57 4.35
31 32 1.154035 CCGCCGAAGCCAAAATGAC 60.154 57.895 0.00 0.00 34.57 3.06
32 33 2.988688 GCCGCCGAAGCCAAAATGA 61.989 57.895 0.00 0.00 34.57 2.57
33 34 2.506881 GCCGCCGAAGCCAAAATG 60.507 61.111 0.00 0.00 34.57 2.32
34 35 4.114997 CGCCGCCGAAGCCAAAAT 62.115 61.111 0.00 0.00 36.29 1.82
41 42 4.951963 GGATCCTCGCCGCCGAAG 62.952 72.222 3.84 0.00 43.87 3.79
45 46 4.688966 GGATGGATCCTCGCCGCC 62.689 72.222 14.23 1.57 43.73 6.13
46 47 4.688966 GGGATGGATCCTCGCCGC 62.689 72.222 14.23 4.16 46.35 6.53
47 48 2.919856 AGGGATGGATCCTCGCCG 60.920 66.667 14.23 0.00 46.35 6.46
48 49 1.838846 TCAGGGATGGATCCTCGCC 60.839 63.158 14.23 11.12 46.35 5.54
49 50 1.369321 GTCAGGGATGGATCCTCGC 59.631 63.158 14.23 15.21 46.35 5.03
50 51 0.823769 TCGTCAGGGATGGATCCTCG 60.824 60.000 14.23 5.30 46.35 4.63
51 52 0.965439 CTCGTCAGGGATGGATCCTC 59.035 60.000 14.23 7.92 46.35 3.71
52 53 0.470833 CCTCGTCAGGGATGGATCCT 60.471 60.000 14.23 0.00 46.35 3.24
53 54 2.053618 CCTCGTCAGGGATGGATCC 58.946 63.158 4.20 4.20 46.41 3.36
54 55 1.369321 GCCTCGTCAGGGATGGATC 59.631 63.158 0.00 0.00 40.75 3.36
55 56 2.143419 GGCCTCGTCAGGGATGGAT 61.143 63.158 0.00 0.00 40.75 3.41
56 57 2.764128 GGCCTCGTCAGGGATGGA 60.764 66.667 0.00 0.00 40.75 3.41
57 58 2.317149 GAAGGCCTCGTCAGGGATGG 62.317 65.000 5.23 0.00 40.75 3.51
58 59 1.144936 GAAGGCCTCGTCAGGGATG 59.855 63.158 5.23 0.00 40.75 3.51
59 60 1.306141 TGAAGGCCTCGTCAGGGAT 60.306 57.895 5.23 0.00 40.75 3.85
60 61 1.984570 CTGAAGGCCTCGTCAGGGA 60.985 63.158 22.20 0.00 42.92 4.20
61 62 2.581354 CTGAAGGCCTCGTCAGGG 59.419 66.667 22.20 3.42 42.92 4.45
64 65 0.039180 TAGGACTGAAGGCCTCGTCA 59.961 55.000 23.27 16.62 35.73 4.35
65 66 1.067821 CATAGGACTGAAGGCCTCGTC 59.932 57.143 8.35 13.37 35.73 4.20
66 67 1.115467 CATAGGACTGAAGGCCTCGT 58.885 55.000 8.35 3.39 35.73 4.18
67 68 0.390860 CCATAGGACTGAAGGCCTCG 59.609 60.000 8.35 1.03 35.73 4.63
68 69 1.501582 ACCATAGGACTGAAGGCCTC 58.498 55.000 8.35 0.00 35.73 4.70
69 70 1.561542 CAACCATAGGACTGAAGGCCT 59.438 52.381 10.25 10.25 38.31 5.19
70 71 1.408822 CCAACCATAGGACTGAAGGCC 60.409 57.143 0.00 0.00 0.00 5.19
71 72 1.408822 CCCAACCATAGGACTGAAGGC 60.409 57.143 0.00 0.00 0.00 4.35
72 73 1.212935 CCCCAACCATAGGACTGAAGG 59.787 57.143 0.00 0.00 0.00 3.46
73 74 1.212935 CCCCCAACCATAGGACTGAAG 59.787 57.143 0.00 0.00 0.00 3.02
74 75 1.295020 CCCCCAACCATAGGACTGAA 58.705 55.000 0.00 0.00 0.00 3.02
75 76 0.120377 ACCCCCAACCATAGGACTGA 59.880 55.000 0.00 0.00 0.00 3.41
76 77 0.255890 CACCCCCAACCATAGGACTG 59.744 60.000 0.00 0.00 0.00 3.51
77 78 0.120377 TCACCCCCAACCATAGGACT 59.880 55.000 0.00 0.00 0.00 3.85
78 79 0.996583 TTCACCCCCAACCATAGGAC 59.003 55.000 0.00 0.00 0.00 3.85
79 80 1.994399 ATTCACCCCCAACCATAGGA 58.006 50.000 0.00 0.00 0.00 2.94
80 81 2.765699 CAAATTCACCCCCAACCATAGG 59.234 50.000 0.00 0.00 0.00 2.57
81 82 2.765699 CCAAATTCACCCCCAACCATAG 59.234 50.000 0.00 0.00 0.00 2.23
82 83 2.383683 TCCAAATTCACCCCCAACCATA 59.616 45.455 0.00 0.00 0.00 2.74
83 84 1.150986 TCCAAATTCACCCCCAACCAT 59.849 47.619 0.00 0.00 0.00 3.55
84 85 0.563173 TCCAAATTCACCCCCAACCA 59.437 50.000 0.00 0.00 0.00 3.67
85 86 1.723288 TTCCAAATTCACCCCCAACC 58.277 50.000 0.00 0.00 0.00 3.77
86 87 2.224426 GGTTTCCAAATTCACCCCCAAC 60.224 50.000 0.00 0.00 0.00 3.77
87 88 2.050918 GGTTTCCAAATTCACCCCCAA 58.949 47.619 0.00 0.00 0.00 4.12
88 89 1.062121 TGGTTTCCAAATTCACCCCCA 60.062 47.619 0.00 0.00 0.00 4.96
89 90 1.723288 TGGTTTCCAAATTCACCCCC 58.277 50.000 0.00 0.00 0.00 5.40
100 101 3.295093 TGCTTGAACAGATTGGTTTCCA 58.705 40.909 0.00 0.00 0.00 3.53
101 102 4.301628 CTTGCTTGAACAGATTGGTTTCC 58.698 43.478 0.00 0.00 0.00 3.13
102 103 4.037923 TCCTTGCTTGAACAGATTGGTTTC 59.962 41.667 0.00 0.00 0.00 2.78
103 104 3.960102 TCCTTGCTTGAACAGATTGGTTT 59.040 39.130 0.00 0.00 0.00 3.27
104 105 3.565307 TCCTTGCTTGAACAGATTGGTT 58.435 40.909 0.00 0.00 0.00 3.67
105 106 3.228188 TCCTTGCTTGAACAGATTGGT 57.772 42.857 0.00 0.00 0.00 3.67
106 107 3.119245 CCATCCTTGCTTGAACAGATTGG 60.119 47.826 0.00 0.00 0.00 3.16
107 108 3.675228 GCCATCCTTGCTTGAACAGATTG 60.675 47.826 0.00 0.00 0.00 2.67
108 109 2.494870 GCCATCCTTGCTTGAACAGATT 59.505 45.455 0.00 0.00 0.00 2.40
109 110 2.097825 GCCATCCTTGCTTGAACAGAT 58.902 47.619 0.00 0.00 0.00 2.90
110 111 1.202915 TGCCATCCTTGCTTGAACAGA 60.203 47.619 0.00 0.00 0.00 3.41
111 112 1.250328 TGCCATCCTTGCTTGAACAG 58.750 50.000 0.00 0.00 0.00 3.16
112 113 1.546923 CATGCCATCCTTGCTTGAACA 59.453 47.619 0.00 0.00 36.33 3.18
113 114 1.134907 CCATGCCATCCTTGCTTGAAC 60.135 52.381 0.00 0.00 36.33 3.18
114 115 1.187974 CCATGCCATCCTTGCTTGAA 58.812 50.000 0.00 0.00 36.33 2.69
115 116 0.040058 ACCATGCCATCCTTGCTTGA 59.960 50.000 0.00 0.00 36.33 3.02
116 117 0.174845 CACCATGCCATCCTTGCTTG 59.825 55.000 0.00 0.00 34.62 4.01
117 118 0.974010 CCACCATGCCATCCTTGCTT 60.974 55.000 0.00 0.00 0.00 3.91
118 119 1.380785 CCACCATGCCATCCTTGCT 60.381 57.895 0.00 0.00 0.00 3.91
119 120 2.428925 CCCACCATGCCATCCTTGC 61.429 63.158 0.00 0.00 0.00 4.01
120 121 1.759299 CCCCACCATGCCATCCTTG 60.759 63.158 0.00 0.00 0.00 3.61
121 122 2.691732 CCCCACCATGCCATCCTT 59.308 61.111 0.00 0.00 0.00 3.36
122 123 4.147587 GCCCCACCATGCCATCCT 62.148 66.667 0.00 0.00 0.00 3.24
136 137 4.241555 ATCACGAGGATGCCGCCC 62.242 66.667 0.00 0.00 34.06 6.13
137 138 2.969238 CATCACGAGGATGCCGCC 60.969 66.667 8.46 0.00 46.35 6.13
143 144 3.589988 GACACAAGTTCATCACGAGGAT 58.410 45.455 0.00 0.00 36.39 3.24
144 145 2.288825 GGACACAAGTTCATCACGAGGA 60.289 50.000 0.00 0.00 0.00 3.71
145 146 2.069273 GGACACAAGTTCATCACGAGG 58.931 52.381 0.00 0.00 0.00 4.63
146 147 2.989840 GAGGACACAAGTTCATCACGAG 59.010 50.000 0.00 0.00 0.00 4.18
147 148 2.607038 CGAGGACACAAGTTCATCACGA 60.607 50.000 0.00 0.00 0.00 4.35
148 149 1.721389 CGAGGACACAAGTTCATCACG 59.279 52.381 0.00 0.00 0.00 4.35
149 150 2.069273 CCGAGGACACAAGTTCATCAC 58.931 52.381 0.00 0.00 0.00 3.06
150 151 1.001974 CCCGAGGACACAAGTTCATCA 59.998 52.381 0.00 0.00 0.00 3.07
151 152 1.726853 CCCGAGGACACAAGTTCATC 58.273 55.000 0.00 0.00 0.00 2.92
152 153 0.321653 GCCCGAGGACACAAGTTCAT 60.322 55.000 0.00 0.00 0.00 2.57
153 154 1.070786 GCCCGAGGACACAAGTTCA 59.929 57.895 0.00 0.00 0.00 3.18
154 155 0.670854 GAGCCCGAGGACACAAGTTC 60.671 60.000 0.00 0.00 0.00 3.01
155 156 1.371558 GAGCCCGAGGACACAAGTT 59.628 57.895 0.00 0.00 0.00 2.66
156 157 2.584391 GGAGCCCGAGGACACAAGT 61.584 63.158 0.00 0.00 0.00 3.16
157 158 2.266055 GGAGCCCGAGGACACAAG 59.734 66.667 0.00 0.00 0.00 3.16
175 176 4.307908 AAACGCCGTCGCAACAGC 62.308 61.111 0.00 0.00 39.84 4.40
176 177 2.425124 CAAACGCCGTCGCAACAG 60.425 61.111 0.00 0.00 39.84 3.16
177 178 4.599434 GCAAACGCCGTCGCAACA 62.599 61.111 6.72 0.00 39.84 3.33
178 179 4.307908 AGCAAACGCCGTCGCAAC 62.308 61.111 13.17 0.00 39.84 4.17
179 180 4.007940 GAGCAAACGCCGTCGCAA 62.008 61.111 13.17 0.00 39.84 4.85
182 183 3.777925 CTGGAGCAAACGCCGTCG 61.778 66.667 0.00 0.00 38.90 5.12
183 184 4.090057 GCTGGAGCAAACGCCGTC 62.090 66.667 0.00 0.00 38.90 4.79
186 187 4.090057 GACGCTGGAGCAAACGCC 62.090 66.667 0.00 0.00 42.21 5.68
187 188 4.430423 CGACGCTGGAGCAAACGC 62.430 66.667 0.00 0.00 42.21 4.84
188 189 3.777925 CCGACGCTGGAGCAAACG 61.778 66.667 0.00 1.42 42.21 3.60
189 190 4.090057 GCCGACGCTGGAGCAAAC 62.090 66.667 0.00 0.00 42.21 2.93
205 206 2.945398 CTACCTCTCAAGCTCCGCGC 62.945 65.000 0.00 0.00 39.57 6.86
206 207 1.064946 CTACCTCTCAAGCTCCGCG 59.935 63.158 0.00 0.00 0.00 6.46
207 208 0.101579 GACTACCTCTCAAGCTCCGC 59.898 60.000 0.00 0.00 0.00 5.54
208 209 0.741915 GGACTACCTCTCAAGCTCCG 59.258 60.000 0.00 0.00 0.00 4.63
209 210 1.754226 CTGGACTACCTCTCAAGCTCC 59.246 57.143 0.00 0.00 37.04 4.70
210 211 1.754226 CCTGGACTACCTCTCAAGCTC 59.246 57.143 0.00 0.00 37.04 4.09
211 212 1.359474 TCCTGGACTACCTCTCAAGCT 59.641 52.381 0.00 0.00 37.04 3.74
212 213 1.754226 CTCCTGGACTACCTCTCAAGC 59.246 57.143 0.00 0.00 37.04 4.01
213 214 2.757868 CACTCCTGGACTACCTCTCAAG 59.242 54.545 0.00 0.00 37.04 3.02
214 215 2.557676 CCACTCCTGGACTACCTCTCAA 60.558 54.545 0.00 0.00 40.55 3.02
215 216 1.006043 CCACTCCTGGACTACCTCTCA 59.994 57.143 0.00 0.00 40.55 3.27
216 217 1.285373 TCCACTCCTGGACTACCTCTC 59.715 57.143 0.00 0.00 42.15 3.20
217 218 1.383963 TCCACTCCTGGACTACCTCT 58.616 55.000 0.00 0.00 42.15 3.69
226 227 1.064906 ACAATCTGCATCCACTCCTGG 60.065 52.381 0.00 0.00 39.23 4.45
227 228 2.014857 CACAATCTGCATCCACTCCTG 58.985 52.381 0.00 0.00 0.00 3.86
228 229 1.911357 TCACAATCTGCATCCACTCCT 59.089 47.619 0.00 0.00 0.00 3.69
229 230 2.408271 TCACAATCTGCATCCACTCC 57.592 50.000 0.00 0.00 0.00 3.85
230 231 3.806380 AGATCACAATCTGCATCCACTC 58.194 45.455 0.00 0.00 40.84 3.51
231 232 3.928005 AGATCACAATCTGCATCCACT 57.072 42.857 0.00 0.00 40.84 4.00
240 241 2.099756 TCGTCGATGCAGATCACAATCT 59.900 45.455 0.00 0.00 43.24 2.40
241 242 2.217393 GTCGTCGATGCAGATCACAATC 59.783 50.000 0.00 0.00 0.00 2.67
242 243 2.196749 GTCGTCGATGCAGATCACAAT 58.803 47.619 0.00 0.00 0.00 2.71
243 244 1.067915 TGTCGTCGATGCAGATCACAA 60.068 47.619 0.00 0.00 0.00 3.33
244 245 0.525761 TGTCGTCGATGCAGATCACA 59.474 50.000 0.00 0.00 0.00 3.58
245 246 1.783711 GATGTCGTCGATGCAGATCAC 59.216 52.381 0.00 0.00 0.00 3.06
246 247 1.678101 AGATGTCGTCGATGCAGATCA 59.322 47.619 0.00 0.00 0.00 2.92
247 248 2.049959 CAGATGTCGTCGATGCAGATC 58.950 52.381 0.00 3.35 0.00 2.75
248 249 1.269465 CCAGATGTCGTCGATGCAGAT 60.269 52.381 0.00 0.00 0.00 2.90
249 250 0.101219 CCAGATGTCGTCGATGCAGA 59.899 55.000 0.00 0.00 0.00 4.26
250 251 0.101219 TCCAGATGTCGTCGATGCAG 59.899 55.000 0.00 0.00 0.00 4.41
251 252 0.530288 TTCCAGATGTCGTCGATGCA 59.470 50.000 0.00 1.91 0.00 3.96
252 253 1.202302 TCTTCCAGATGTCGTCGATGC 60.202 52.381 0.00 0.00 0.00 3.91
253 254 2.455032 GTCTTCCAGATGTCGTCGATG 58.545 52.381 0.00 0.00 0.00 3.84
254 255 1.064208 CGTCTTCCAGATGTCGTCGAT 59.936 52.381 0.00 0.00 0.00 3.59
255 256 0.446616 CGTCTTCCAGATGTCGTCGA 59.553 55.000 0.00 0.00 0.00 4.20
256 257 0.446616 TCGTCTTCCAGATGTCGTCG 59.553 55.000 0.00 0.00 33.10 5.12
257 258 2.631418 TTCGTCTTCCAGATGTCGTC 57.369 50.000 1.56 0.00 33.10 4.20
258 259 2.673833 GTTTCGTCTTCCAGATGTCGT 58.326 47.619 1.56 0.00 33.10 4.34
259 260 1.649171 CGTTTCGTCTTCCAGATGTCG 59.351 52.381 0.00 0.00 33.10 4.35
260 261 2.408704 CACGTTTCGTCTTCCAGATGTC 59.591 50.000 0.00 0.00 38.32 3.06
261 262 2.223971 ACACGTTTCGTCTTCCAGATGT 60.224 45.455 0.00 0.00 38.32 3.06
262 263 2.155732 CACACGTTTCGTCTTCCAGATG 59.844 50.000 0.00 0.00 38.32 2.90
263 264 2.404215 CACACGTTTCGTCTTCCAGAT 58.596 47.619 0.00 0.00 38.32 2.90
264 265 1.537348 CCACACGTTTCGTCTTCCAGA 60.537 52.381 0.00 0.00 38.32 3.86
265 266 0.859232 CCACACGTTTCGTCTTCCAG 59.141 55.000 0.00 0.00 38.32 3.86
266 267 0.176219 ACCACACGTTTCGTCTTCCA 59.824 50.000 0.00 0.00 38.32 3.53
267 268 0.580104 CACCACACGTTTCGTCTTCC 59.420 55.000 0.00 0.00 38.32 3.46
268 269 0.580104 CCACCACACGTTTCGTCTTC 59.420 55.000 0.00 0.00 38.32 2.87
269 270 0.812412 CCCACCACACGTTTCGTCTT 60.812 55.000 0.00 0.00 38.32 3.01
270 271 1.227438 CCCACCACACGTTTCGTCT 60.227 57.895 0.00 0.00 38.32 4.18
271 272 1.091197 AACCCACCACACGTTTCGTC 61.091 55.000 0.00 0.00 38.32 4.20
272 273 1.078285 AACCCACCACACGTTTCGT 60.078 52.632 0.00 0.00 42.36 3.85
273 274 1.644913 GAACCCACCACACGTTTCG 59.355 57.895 0.00 0.00 0.00 3.46
274 275 1.091197 ACGAACCCACCACACGTTTC 61.091 55.000 0.00 0.00 33.48 2.78
275 276 1.078285 ACGAACCCACCACACGTTT 60.078 52.632 0.00 0.00 33.48 3.60
276 277 1.816259 CACGAACCCACCACACGTT 60.816 57.895 0.00 0.00 35.05 3.99
277 278 2.202960 CACGAACCCACCACACGT 60.203 61.111 0.00 0.00 37.68 4.49
278 279 2.970324 CCACGAACCCACCACACG 60.970 66.667 0.00 0.00 0.00 4.49
279 280 1.441732 GAACCACGAACCCACCACAC 61.442 60.000 0.00 0.00 0.00 3.82
280 281 1.153127 GAACCACGAACCCACCACA 60.153 57.895 0.00 0.00 0.00 4.17
281 282 2.248835 CGAACCACGAACCCACCAC 61.249 63.158 0.00 0.00 45.77 4.16
282 283 2.109387 CGAACCACGAACCCACCA 59.891 61.111 0.00 0.00 45.77 4.17
283 284 2.109593 ACGAACCACGAACCCACC 59.890 61.111 0.00 0.00 45.77 4.61
284 285 2.248835 CCACGAACCACGAACCCAC 61.249 63.158 0.00 0.00 45.77 4.61
285 286 1.760479 ATCCACGAACCACGAACCCA 61.760 55.000 0.00 0.00 45.77 4.51
286 287 1.004200 ATCCACGAACCACGAACCC 60.004 57.895 0.00 0.00 45.77 4.11
287 288 1.296056 CCATCCACGAACCACGAACC 61.296 60.000 0.00 0.00 45.77 3.62
288 289 1.908066 GCCATCCACGAACCACGAAC 61.908 60.000 0.00 0.00 45.77 3.95
289 290 1.669760 GCCATCCACGAACCACGAA 60.670 57.895 0.00 0.00 45.77 3.85
290 291 2.047655 GCCATCCACGAACCACGA 60.048 61.111 0.00 0.00 45.77 4.35
292 293 2.040544 CCTGCCATCCACGAACCAC 61.041 63.158 0.00 0.00 0.00 4.16
293 294 1.195442 TACCTGCCATCCACGAACCA 61.195 55.000 0.00 0.00 0.00 3.67
294 295 0.180406 ATACCTGCCATCCACGAACC 59.820 55.000 0.00 0.00 0.00 3.62
295 296 1.299541 CATACCTGCCATCCACGAAC 58.700 55.000 0.00 0.00 0.00 3.95
296 297 0.180171 CCATACCTGCCATCCACGAA 59.820 55.000 0.00 0.00 0.00 3.85
297 298 0.980754 ACCATACCTGCCATCCACGA 60.981 55.000 0.00 0.00 0.00 4.35
298 299 0.107214 AACCATACCTGCCATCCACG 60.107 55.000 0.00 0.00 0.00 4.94
299 300 1.750778 CAAACCATACCTGCCATCCAC 59.249 52.381 0.00 0.00 0.00 4.02
300 301 1.959508 GCAAACCATACCTGCCATCCA 60.960 52.381 0.00 0.00 0.00 3.41
301 302 0.746659 GCAAACCATACCTGCCATCC 59.253 55.000 0.00 0.00 0.00 3.51
302 303 1.678101 GAGCAAACCATACCTGCCATC 59.322 52.381 0.00 0.00 36.73 3.51
303 304 1.686115 GGAGCAAACCATACCTGCCAT 60.686 52.381 0.00 0.00 36.73 4.40
304 305 0.323360 GGAGCAAACCATACCTGCCA 60.323 55.000 0.00 0.00 36.73 4.92
305 306 0.034089 AGGAGCAAACCATACCTGCC 60.034 55.000 0.00 0.00 36.73 4.85
306 307 1.839424 AAGGAGCAAACCATACCTGC 58.161 50.000 0.00 0.00 36.29 4.85
307 308 2.493278 CCAAAGGAGCAAACCATACCTG 59.507 50.000 0.00 0.00 0.00 4.00
308 309 2.807676 CCAAAGGAGCAAACCATACCT 58.192 47.619 0.00 0.00 0.00 3.08
309 310 1.204704 GCCAAAGGAGCAAACCATACC 59.795 52.381 0.00 0.00 0.00 2.73
310 311 1.135402 CGCCAAAGGAGCAAACCATAC 60.135 52.381 0.00 0.00 0.00 2.39
311 312 1.173043 CGCCAAAGGAGCAAACCATA 58.827 50.000 0.00 0.00 0.00 2.74
312 313 0.827507 ACGCCAAAGGAGCAAACCAT 60.828 50.000 0.00 0.00 0.00 3.55
313 314 1.452145 GACGCCAAAGGAGCAAACCA 61.452 55.000 0.00 0.00 0.00 3.67
314 315 1.172812 AGACGCCAAAGGAGCAAACC 61.173 55.000 0.00 0.00 0.00 3.27
315 316 0.668535 AAGACGCCAAAGGAGCAAAC 59.331 50.000 0.00 0.00 0.00 2.93
316 317 2.151202 CTAAGACGCCAAAGGAGCAAA 58.849 47.619 0.00 0.00 0.00 3.68
317 318 1.071699 ACTAAGACGCCAAAGGAGCAA 59.928 47.619 0.00 0.00 0.00 3.91
318 319 0.685097 ACTAAGACGCCAAAGGAGCA 59.315 50.000 0.00 0.00 0.00 4.26
319 320 1.360820 GACTAAGACGCCAAAGGAGC 58.639 55.000 0.00 0.00 0.00 4.70
320 321 1.067776 ACGACTAAGACGCCAAAGGAG 60.068 52.381 0.00 0.00 0.00 3.69
321 322 0.963962 ACGACTAAGACGCCAAAGGA 59.036 50.000 0.00 0.00 0.00 3.36
322 323 1.068474 CACGACTAAGACGCCAAAGG 58.932 55.000 0.00 0.00 0.00 3.11
323 324 1.068474 CCACGACTAAGACGCCAAAG 58.932 55.000 0.00 0.00 0.00 2.77
324 325 0.390124 ACCACGACTAAGACGCCAAA 59.610 50.000 0.00 0.00 0.00 3.28
325 326 0.319211 CACCACGACTAAGACGCCAA 60.319 55.000 0.00 0.00 0.00 4.52
326 327 1.287815 CACCACGACTAAGACGCCA 59.712 57.895 0.00 0.00 0.00 5.69
327 328 1.445582 CCACCACGACTAAGACGCC 60.446 63.158 0.00 0.00 0.00 5.68
328 329 0.456312 CTCCACCACGACTAAGACGC 60.456 60.000 0.00 0.00 0.00 5.19
329 330 0.879765 ACTCCACCACGACTAAGACG 59.120 55.000 0.00 0.00 0.00 4.18
330 331 1.669211 GCACTCCACCACGACTAAGAC 60.669 57.143 0.00 0.00 0.00 3.01
331 332 0.601558 GCACTCCACCACGACTAAGA 59.398 55.000 0.00 0.00 0.00 2.10
332 333 0.389948 GGCACTCCACCACGACTAAG 60.390 60.000 0.00 0.00 0.00 2.18
333 334 1.116536 TGGCACTCCACCACGACTAA 61.117 55.000 0.00 0.00 37.47 2.24
334 335 1.532078 TGGCACTCCACCACGACTA 60.532 57.895 0.00 0.00 37.47 2.59
335 336 2.842462 TGGCACTCCACCACGACT 60.842 61.111 0.00 0.00 37.47 4.18
336 337 2.172483 ATCTGGCACTCCACCACGAC 62.172 60.000 0.00 0.00 37.47 4.34
337 338 1.888436 GATCTGGCACTCCACCACGA 61.888 60.000 0.00 0.00 37.47 4.35
338 339 1.448540 GATCTGGCACTCCACCACG 60.449 63.158 0.00 0.00 37.47 4.94
339 340 0.392193 CAGATCTGGCACTCCACCAC 60.392 60.000 15.38 0.00 37.47 4.16
340 341 1.556373 CCAGATCTGGCACTCCACCA 61.556 60.000 28.45 0.00 44.73 4.17
341 342 1.222936 CCAGATCTGGCACTCCACC 59.777 63.158 28.45 0.00 44.73 4.61
342 343 4.950479 CCAGATCTGGCACTCCAC 57.050 61.111 28.45 0.00 44.73 4.02
351 352 2.167281 ACACCATCGAACTCCAGATCTG 59.833 50.000 16.24 16.24 0.00 2.90
352 353 2.167281 CACACCATCGAACTCCAGATCT 59.833 50.000 0.00 0.00 0.00 2.75
353 354 2.093973 ACACACCATCGAACTCCAGATC 60.094 50.000 0.00 0.00 0.00 2.75
354 355 1.902508 ACACACCATCGAACTCCAGAT 59.097 47.619 0.00 0.00 0.00 2.90
355 356 1.272490 GACACACCATCGAACTCCAGA 59.728 52.381 0.00 0.00 0.00 3.86
356 357 1.273606 AGACACACCATCGAACTCCAG 59.726 52.381 0.00 0.00 0.00 3.86
357 358 1.000843 CAGACACACCATCGAACTCCA 59.999 52.381 0.00 0.00 0.00 3.86
358 359 1.272490 TCAGACACACCATCGAACTCC 59.728 52.381 0.00 0.00 0.00 3.85
359 360 2.600731 CTCAGACACACCATCGAACTC 58.399 52.381 0.00 0.00 0.00 3.01
360 361 1.273606 CCTCAGACACACCATCGAACT 59.726 52.381 0.00 0.00 0.00 3.01
361 362 1.000955 ACCTCAGACACACCATCGAAC 59.999 52.381 0.00 0.00 0.00 3.95
362 363 1.000843 CACCTCAGACACACCATCGAA 59.999 52.381 0.00 0.00 0.00 3.71
363 364 0.603065 CACCTCAGACACACCATCGA 59.397 55.000 0.00 0.00 0.00 3.59
364 365 0.318441 ACACCTCAGACACACCATCG 59.682 55.000 0.00 0.00 0.00 3.84
365 366 2.146342 CAACACCTCAGACACACCATC 58.854 52.381 0.00 0.00 0.00 3.51
366 367 1.815408 GCAACACCTCAGACACACCAT 60.815 52.381 0.00 0.00 0.00 3.55
367 368 0.463654 GCAACACCTCAGACACACCA 60.464 55.000 0.00 0.00 0.00 4.17
368 369 0.179045 AGCAACACCTCAGACACACC 60.179 55.000 0.00 0.00 0.00 4.16
369 370 1.221414 GAGCAACACCTCAGACACAC 58.779 55.000 0.00 0.00 0.00 3.82
370 371 0.106708 GGAGCAACACCTCAGACACA 59.893 55.000 0.00 0.00 33.47 3.72
371 372 0.946221 CGGAGCAACACCTCAGACAC 60.946 60.000 0.00 0.00 33.47 3.67
372 373 1.367471 CGGAGCAACACCTCAGACA 59.633 57.895 0.00 0.00 33.47 3.41
373 374 1.374758 CCGGAGCAACACCTCAGAC 60.375 63.158 0.00 0.00 33.47 3.51
374 375 1.816863 GACCGGAGCAACACCTCAGA 61.817 60.000 9.46 0.00 33.47 3.27
375 376 1.374758 GACCGGAGCAACACCTCAG 60.375 63.158 9.46 0.00 33.47 3.35
376 377 1.837051 AGACCGGAGCAACACCTCA 60.837 57.895 9.46 0.00 33.47 3.86
377 378 1.374758 CAGACCGGAGCAACACCTC 60.375 63.158 9.46 0.00 0.00 3.85
378 379 1.194781 ATCAGACCGGAGCAACACCT 61.195 55.000 9.46 0.00 0.00 4.00
379 380 0.321653 AATCAGACCGGAGCAACACC 60.322 55.000 9.46 0.00 0.00 4.16
380 381 1.079503 GAATCAGACCGGAGCAACAC 58.920 55.000 9.46 0.00 0.00 3.32
381 382 0.389817 CGAATCAGACCGGAGCAACA 60.390 55.000 9.46 0.00 0.00 3.33
382 383 0.389948 ACGAATCAGACCGGAGCAAC 60.390 55.000 9.46 0.00 0.00 4.17
383 384 0.320374 AACGAATCAGACCGGAGCAA 59.680 50.000 9.46 0.00 0.00 3.91
384 385 0.108804 GAACGAATCAGACCGGAGCA 60.109 55.000 9.46 0.00 0.00 4.26
385 386 0.108804 TGAACGAATCAGACCGGAGC 60.109 55.000 9.46 0.00 33.04 4.70
386 387 2.363788 TTGAACGAATCAGACCGGAG 57.636 50.000 9.46 0.00 39.77 4.63
387 388 2.616960 CATTGAACGAATCAGACCGGA 58.383 47.619 9.46 0.00 39.77 5.14
388 389 1.665679 CCATTGAACGAATCAGACCGG 59.334 52.381 0.00 0.00 39.77 5.28
389 390 1.062587 GCCATTGAACGAATCAGACCG 59.937 52.381 0.00 0.00 39.77 4.79
390 391 2.083774 TGCCATTGAACGAATCAGACC 58.916 47.619 0.00 0.00 39.77 3.85
391 392 3.829886 TTGCCATTGAACGAATCAGAC 57.170 42.857 0.00 0.00 39.77 3.51
392 393 4.035558 GCTATTGCCATTGAACGAATCAGA 59.964 41.667 0.00 0.00 39.77 3.27
393 394 4.036027 AGCTATTGCCATTGAACGAATCAG 59.964 41.667 0.00 0.00 38.60 2.90
394 395 3.947196 AGCTATTGCCATTGAACGAATCA 59.053 39.130 0.00 0.00 40.80 2.57
395 396 4.558538 AGCTATTGCCATTGAACGAATC 57.441 40.909 0.00 0.00 40.80 2.52
396 397 4.398988 TGAAGCTATTGCCATTGAACGAAT 59.601 37.500 0.00 0.00 40.80 3.34
397 398 3.755905 TGAAGCTATTGCCATTGAACGAA 59.244 39.130 0.00 0.00 40.80 3.85
398 399 3.126858 GTGAAGCTATTGCCATTGAACGA 59.873 43.478 0.00 0.00 40.80 3.85
399 400 3.127548 AGTGAAGCTATTGCCATTGAACG 59.872 43.478 0.00 0.00 40.80 3.95
400 401 4.708726 AGTGAAGCTATTGCCATTGAAC 57.291 40.909 0.00 0.00 40.80 3.18
401 402 5.726980 AAAGTGAAGCTATTGCCATTGAA 57.273 34.783 0.00 0.00 40.80 2.69
402 403 5.472148 CAAAAGTGAAGCTATTGCCATTGA 58.528 37.500 0.00 0.00 40.80 2.57
403 404 4.628333 CCAAAAGTGAAGCTATTGCCATTG 59.372 41.667 0.00 0.00 40.80 2.82
404 405 4.284234 ACCAAAAGTGAAGCTATTGCCATT 59.716 37.500 0.00 0.00 40.80 3.16
405 406 3.834231 ACCAAAAGTGAAGCTATTGCCAT 59.166 39.130 0.00 0.00 40.80 4.40
406 407 3.230134 ACCAAAAGTGAAGCTATTGCCA 58.770 40.909 0.00 0.00 40.80 4.92
407 408 3.942130 ACCAAAAGTGAAGCTATTGCC 57.058 42.857 0.00 0.00 40.80 4.52
425 426 4.141482 TGAGGACCTTTAATATGGCTCACC 60.141 45.833 0.00 0.00 0.00 4.02
426 427 5.036117 TGAGGACCTTTAATATGGCTCAC 57.964 43.478 0.00 0.00 0.00 3.51
427 428 5.708736 TTGAGGACCTTTAATATGGCTCA 57.291 39.130 0.00 0.00 0.00 4.26
428 429 5.009110 GCTTTGAGGACCTTTAATATGGCTC 59.991 44.000 0.00 0.00 0.00 4.70
429 430 4.889995 GCTTTGAGGACCTTTAATATGGCT 59.110 41.667 0.00 0.00 0.00 4.75
430 431 4.889995 AGCTTTGAGGACCTTTAATATGGC 59.110 41.667 0.00 0.00 0.00 4.40
431 432 9.965902 ATATAGCTTTGAGGACCTTTAATATGG 57.034 33.333 0.00 0.00 0.00 2.74
437 438 8.314751 GCTGATATATAGCTTTGAGGACCTTTA 58.685 37.037 0.00 0.00 38.14 1.85
438 439 7.164803 GCTGATATATAGCTTTGAGGACCTTT 58.835 38.462 0.00 0.00 38.14 3.11
439 440 6.573289 CGCTGATATATAGCTTTGAGGACCTT 60.573 42.308 0.00 0.00 39.00 3.50
440 441 5.105554 CGCTGATATATAGCTTTGAGGACCT 60.106 44.000 0.00 0.00 39.00 3.85
441 442 5.105716 TCGCTGATATATAGCTTTGAGGACC 60.106 44.000 0.00 0.00 39.00 4.46
442 443 5.955488 TCGCTGATATATAGCTTTGAGGAC 58.045 41.667 0.00 0.00 39.00 3.85
443 444 6.406288 CCATCGCTGATATATAGCTTTGAGGA 60.406 42.308 0.00 0.48 39.00 3.71
444 445 5.752472 CCATCGCTGATATATAGCTTTGAGG 59.248 44.000 0.00 0.00 39.00 3.86
445 446 6.567959 TCCATCGCTGATATATAGCTTTGAG 58.432 40.000 0.00 0.00 39.00 3.02
446 447 6.530019 TCCATCGCTGATATATAGCTTTGA 57.470 37.500 0.00 0.00 39.00 2.69
447 448 5.233902 GCTCCATCGCTGATATATAGCTTTG 59.766 44.000 0.00 6.67 39.00 2.77
448 449 5.355596 GCTCCATCGCTGATATATAGCTTT 58.644 41.667 0.00 0.00 39.00 3.51
449 450 4.202202 GGCTCCATCGCTGATATATAGCTT 60.202 45.833 0.00 0.00 39.00 3.74
450 451 3.320541 GGCTCCATCGCTGATATATAGCT 59.679 47.826 9.12 0.00 39.00 3.32
451 452 3.648009 GGCTCCATCGCTGATATATAGC 58.352 50.000 2.16 2.16 37.80 2.97
452 453 3.894920 CGGCTCCATCGCTGATATATAG 58.105 50.000 0.00 0.00 38.57 1.31
453 454 3.990318 CGGCTCCATCGCTGATATATA 57.010 47.619 0.00 0.00 38.57 0.86
454 455 2.879002 CGGCTCCATCGCTGATATAT 57.121 50.000 0.00 0.00 38.57 0.86
463 464 2.813474 TTTGACGCGGCTCCATCG 60.813 61.111 15.80 0.00 0.00 3.84
464 465 1.298859 AAGTTTGACGCGGCTCCATC 61.299 55.000 15.80 0.00 0.00 3.51
465 466 0.889186 AAAGTTTGACGCGGCTCCAT 60.889 50.000 15.80 0.00 0.00 3.41
466 467 1.525077 AAAGTTTGACGCGGCTCCA 60.525 52.632 15.80 0.34 0.00 3.86
467 468 1.082104 CAAAGTTTGACGCGGCTCC 60.082 57.895 15.80 0.00 0.00 4.70
468 469 1.082104 CCAAAGTTTGACGCGGCTC 60.082 57.895 15.80 0.43 0.00 4.70
469 470 1.822186 ACCAAAGTTTGACGCGGCT 60.822 52.632 15.80 0.00 0.00 5.52
470 471 1.657181 CACCAAAGTTTGACGCGGC 60.657 57.895 17.33 8.67 0.00 6.53
471 472 0.041312 CTCACCAAAGTTTGACGCGG 60.041 55.000 17.33 2.25 0.00 6.46
472 473 0.934496 TCTCACCAAAGTTTGACGCG 59.066 50.000 17.33 3.53 0.00 6.01
473 474 2.716398 GTTCTCACCAAAGTTTGACGC 58.284 47.619 17.33 0.00 0.00 5.19
474 475 2.350498 ACGTTCTCACCAAAGTTTGACG 59.650 45.455 17.33 17.90 0.00 4.35
475 476 3.372822 TCACGTTCTCACCAAAGTTTGAC 59.627 43.478 17.33 5.11 0.00 3.18
476 477 3.601435 TCACGTTCTCACCAAAGTTTGA 58.399 40.909 17.33 0.00 0.00 2.69
477 478 4.527564 GATCACGTTCTCACCAAAGTTTG 58.472 43.478 8.73 8.73 0.00 2.93
478 479 3.564225 GGATCACGTTCTCACCAAAGTTT 59.436 43.478 0.00 0.00 0.00 2.66
479 480 3.139077 GGATCACGTTCTCACCAAAGTT 58.861 45.455 0.00 0.00 0.00 2.66
480 481 2.767505 GGATCACGTTCTCACCAAAGT 58.232 47.619 0.00 0.00 0.00 2.66
481 482 1.726791 CGGATCACGTTCTCACCAAAG 59.273 52.381 0.00 0.00 37.93 2.77
482 483 1.790755 CGGATCACGTTCTCACCAAA 58.209 50.000 0.00 0.00 37.93 3.28
483 484 3.507597 CGGATCACGTTCTCACCAA 57.492 52.632 0.00 0.00 37.93 3.67
507 508 3.894427 TCATAGCAGCCACCAAAGAAAAA 59.106 39.130 0.00 0.00 0.00 1.94
508 509 3.495331 TCATAGCAGCCACCAAAGAAAA 58.505 40.909 0.00 0.00 0.00 2.29
509 510 3.153369 TCATAGCAGCCACCAAAGAAA 57.847 42.857 0.00 0.00 0.00 2.52
510 511 2.877097 TCATAGCAGCCACCAAAGAA 57.123 45.000 0.00 0.00 0.00 2.52
511 512 2.239402 TCATCATAGCAGCCACCAAAGA 59.761 45.455 0.00 0.00 0.00 2.52
512 513 2.646930 TCATCATAGCAGCCACCAAAG 58.353 47.619 0.00 0.00 0.00 2.77
513 514 2.804986 TCATCATAGCAGCCACCAAA 57.195 45.000 0.00 0.00 0.00 3.28
514 515 2.578786 CATCATCATAGCAGCCACCAA 58.421 47.619 0.00 0.00 0.00 3.67
515 516 1.816572 GCATCATCATAGCAGCCACCA 60.817 52.381 0.00 0.00 0.00 4.17
516 517 0.879765 GCATCATCATAGCAGCCACC 59.120 55.000 0.00 0.00 0.00 4.61
517 518 0.879765 GGCATCATCATAGCAGCCAC 59.120 55.000 0.00 0.00 41.63 5.01
518 519 0.604511 CGGCATCATCATAGCAGCCA 60.605 55.000 0.00 0.00 42.10 4.75
519 520 0.321034 TCGGCATCATCATAGCAGCC 60.321 55.000 0.00 0.00 38.73 4.85
520 521 1.077123 CTCGGCATCATCATAGCAGC 58.923 55.000 0.00 0.00 0.00 5.25
521 522 1.723220 CCTCGGCATCATCATAGCAG 58.277 55.000 0.00 0.00 0.00 4.24
522 523 0.321034 GCCTCGGCATCATCATAGCA 60.321 55.000 2.41 0.00 41.49 3.49
523 524 2.464682 GCCTCGGCATCATCATAGC 58.535 57.895 2.41 0.00 41.49 2.97
534 535 0.879400 CATCTGTCATCTGCCTCGGC 60.879 60.000 0.00 0.00 42.35 5.54
535 536 0.749049 TCATCTGTCATCTGCCTCGG 59.251 55.000 0.00 0.00 0.00 4.63
536 537 2.591571 TTCATCTGTCATCTGCCTCG 57.408 50.000 0.00 0.00 0.00 4.63
537 538 3.493877 CGATTTCATCTGTCATCTGCCTC 59.506 47.826 0.00 0.00 0.00 4.70
538 539 3.464907 CGATTTCATCTGTCATCTGCCT 58.535 45.455 0.00 0.00 0.00 4.75
539 540 2.547211 CCGATTTCATCTGTCATCTGCC 59.453 50.000 0.00 0.00 0.00 4.85
540 541 3.247173 GTCCGATTTCATCTGTCATCTGC 59.753 47.826 0.00 0.00 0.00 4.26
541 542 3.488678 CGTCCGATTTCATCTGTCATCTG 59.511 47.826 0.00 0.00 0.00 2.90
542 543 3.711086 CGTCCGATTTCATCTGTCATCT 58.289 45.455 0.00 0.00 0.00 2.90
543 544 2.219674 GCGTCCGATTTCATCTGTCATC 59.780 50.000 0.00 0.00 0.00 2.92
544 545 2.159043 AGCGTCCGATTTCATCTGTCAT 60.159 45.455 0.00 0.00 0.00 3.06
545 546 1.204704 AGCGTCCGATTTCATCTGTCA 59.795 47.619 0.00 0.00 0.00 3.58
546 547 1.855360 GAGCGTCCGATTTCATCTGTC 59.145 52.381 0.00 0.00 0.00 3.51
547 548 1.799181 CGAGCGTCCGATTTCATCTGT 60.799 52.381 0.00 0.00 0.00 3.41
548 549 0.848942 CGAGCGTCCGATTTCATCTG 59.151 55.000 0.00 0.00 0.00 2.90
549 550 0.249073 CCGAGCGTCCGATTTCATCT 60.249 55.000 0.34 0.00 0.00 2.90
550 551 1.822250 GCCGAGCGTCCGATTTCATC 61.822 60.000 0.34 0.00 0.00 2.92
551 552 1.883084 GCCGAGCGTCCGATTTCAT 60.883 57.895 0.34 0.00 0.00 2.57
552 553 2.508439 GCCGAGCGTCCGATTTCA 60.508 61.111 0.34 0.00 0.00 2.69
553 554 3.262686 GGCCGAGCGTCCGATTTC 61.263 66.667 0.00 0.00 0.00 2.17
578 579 5.652452 GGAAGCACTTGGGATAAGTACAATT 59.348 40.000 0.00 0.00 0.00 2.32
595 596 5.959618 ACATGTAGTTTAAAGGGAAGCAC 57.040 39.130 0.00 0.00 0.00 4.40
635 642 7.054751 TCGGACTCTGTATGGGATACATATAG 58.945 42.308 5.17 5.17 46.69 1.31
636 643 6.965607 TCGGACTCTGTATGGGATACATATA 58.034 40.000 0.00 0.00 44.11 0.86
637 644 5.827756 TCGGACTCTGTATGGGATACATAT 58.172 41.667 0.00 0.00 44.11 1.78
641 648 3.127203 CGATCGGACTCTGTATGGGATAC 59.873 52.174 7.38 0.00 36.29 2.24
658 665 5.821516 AAGTATAGATAGGCTTCCGATCG 57.178 43.478 8.51 8.51 39.94 3.69
678 686 2.471072 CGAACATGTCGTGTCGAAAG 57.529 50.000 11.35 0.00 45.09 2.62
754 772 4.046462 CGTTTGGTTTTCTGACTAGTCGA 58.954 43.478 17.85 14.41 0.00 4.20
778 796 4.033358 CGAGAGAGTATGTTTGGTTGATGC 59.967 45.833 0.00 0.00 0.00 3.91
779 797 5.410924 TCGAGAGAGTATGTTTGGTTGATG 58.589 41.667 0.00 0.00 34.84 3.07
780 798 5.661056 TCGAGAGAGTATGTTTGGTTGAT 57.339 39.130 0.00 0.00 34.84 2.57
880 901 1.006220 TGTGTGGTAGTGCAGAGCG 60.006 57.895 0.00 0.00 0.00 5.03
891 912 2.445085 TCCTCCGTGGTGTGTGGT 60.445 61.111 0.00 0.00 37.07 4.16
896 917 2.200370 TGGTCTCCTCCGTGGTGT 59.800 61.111 0.00 0.00 37.07 4.16
900 921 2.675423 TCCGTGGTCTCCTCCGTG 60.675 66.667 0.00 0.00 0.00 4.94
901 922 2.361357 CTCCGTGGTCTCCTCCGT 60.361 66.667 0.00 0.00 0.00 4.69
902 923 3.141488 CCTCCGTGGTCTCCTCCG 61.141 72.222 0.00 0.00 0.00 4.63
904 925 1.033202 GTCTCCTCCGTGGTCTCCTC 61.033 65.000 0.00 0.00 37.07 3.71
906 927 2.053277 GGTCTCCTCCGTGGTCTCC 61.053 68.421 0.00 0.00 37.07 3.71
909 930 3.450115 CGGGTCTCCTCCGTGGTC 61.450 72.222 0.00 0.00 42.33 4.02
1158 1444 8.432805 ACACTAATTTTGGAGAGAGAGAAAGAA 58.567 33.333 0.00 0.00 0.00 2.52
1245 1531 3.496507 GTGAACTCAAGAGAAGCAACTCC 59.503 47.826 3.73 0.00 37.60 3.85
1388 4270 1.398692 ACACATTCCCAAACACGCTT 58.601 45.000 0.00 0.00 0.00 4.68
1497 4385 7.821846 TGTGTGTAGCTTGACATCATTAATACA 59.178 33.333 0.00 0.00 0.00 2.29
2023 5251 2.738587 TCTCACTAGGCTCTTCGGAT 57.261 50.000 0.00 0.00 0.00 4.18
2166 5394 2.004583 TCTATGGCGACGACCAAAAG 57.995 50.000 13.63 13.36 44.65 2.27
2173 5401 1.963172 TAGCTCTTCTATGGCGACGA 58.037 50.000 0.00 0.00 0.00 4.20
2546 5797 3.182590 AAAGCCTCGGCAGCAGTCA 62.183 57.895 11.02 0.00 44.88 3.41
2636 5887 6.588719 TTTGAAGAGAGAAAGAGAGAGAGG 57.411 41.667 0.00 0.00 0.00 3.69
3095 6355 1.475751 CCATGCGTCTTCCTTGGCTAT 60.476 52.381 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.