Multiple sequence alignment - TraesCS6B01G147200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G147200 chr6B 100.000 3365 0 0 1 3365 147960484 147963848 0.000000e+00 6215
1 TraesCS6B01G147200 chr6B 86.236 1780 164 40 631 2367 566538298 566536557 0.000000e+00 1855
2 TraesCS6B01G147200 chr6B 85.511 842 101 11 997 1823 140451421 140450586 0.000000e+00 859
3 TraesCS6B01G147200 chr6B 81.066 544 92 11 1916 2452 140433974 140433435 1.120000e-114 424
4 TraesCS6B01G147200 chr6B 81.041 538 91 11 1916 2446 140412817 140412284 5.190000e-113 418
5 TraesCS6B01G147200 chr6B 80.882 544 93 11 1916 2452 140450565 140450026 5.190000e-113 418
6 TraesCS6B01G147200 chr6B 83.554 377 47 7 1459 1823 140434368 140433995 4.160000e-89 339
7 TraesCS6B01G147200 chr6B 83.289 377 47 8 1459 1823 140413210 140412838 1.930000e-87 333
8 TraesCS6B01G147200 chr6B 93.478 92 4 2 2814 2903 231315826 231315735 5.860000e-28 135
9 TraesCS6B01G147200 chr6B 90.816 98 9 0 3092 3189 148314277 148314374 7.580000e-27 132
10 TraesCS6B01G147200 chr6B 91.489 94 6 2 2814 2906 679569170 679569262 9.800000e-26 128
11 TraesCS6B01G147200 chr6D 93.488 2150 96 11 559 2674 73587547 73589686 0.000000e+00 3155
12 TraesCS6B01G147200 chr6D 86.130 1788 179 34 631 2378 379721072 379722830 0.000000e+00 1864
13 TraesCS6B01G147200 chr6D 84.426 854 113 11 997 1831 65390042 65389190 0.000000e+00 822
14 TraesCS6B01G147200 chr6D 81.768 543 87 8 1917 2452 65389182 65388645 8.570000e-121 444
15 TraesCS6B01G147200 chr6D 86.131 274 38 0 3092 3365 73590168 73590441 2.540000e-76 296
16 TraesCS6B01G147200 chr6D 83.858 254 18 13 327 559 73587255 73587506 1.570000e-53 220
17 TraesCS6B01G147200 chr6A 94.867 1948 90 6 558 2499 90032238 90034181 0.000000e+00 3035
18 TraesCS6B01G147200 chr6A 85.620 1815 189 39 605 2378 520872862 520871079 0.000000e+00 1840
19 TraesCS6B01G147200 chr6A 85.463 853 103 11 997 1831 83362165 83363014 0.000000e+00 869
20 TraesCS6B01G147200 chr6A 90.393 229 13 7 338 558 90031973 90032200 3.280000e-75 292
21 TraesCS6B01G147200 chr7A 92.308 182 12 1 704 885 310667500 310667679 1.200000e-64 257
22 TraesCS6B01G147200 chr7A 89.820 167 17 0 719 885 509847773 509847939 7.310000e-52 215
23 TraesCS6B01G147200 chr7B 89.205 176 17 1 710 885 334444346 334444173 5.650000e-53 219
24 TraesCS6B01G147200 chr7B 96.429 84 2 1 2816 2898 642265954 642265871 1.630000e-28 137
25 TraesCS6B01G147200 chr7B 93.333 90 5 1 2810 2898 735006663 735006752 7.580000e-27 132
26 TraesCS6B01G147200 chr5B 93.407 91 5 1 2814 2903 241165062 241165152 2.110000e-27 134
27 TraesCS6B01G147200 chrUn 94.253 87 3 2 2814 2899 272115017 272115102 7.580000e-27 132
28 TraesCS6B01G147200 chrUn 92.391 92 6 1 2813 2903 359670010 359670101 2.720000e-26 130
29 TraesCS6B01G147200 chr5D 88.073 109 13 0 1004 1112 363231567 363231675 2.720000e-26 130
30 TraesCS6B01G147200 chr3B 92.391 92 5 2 2814 2903 316163648 316163739 2.720000e-26 130
31 TraesCS6B01G147200 chr2B 92.391 92 5 2 2814 2903 428384580 428384671 2.720000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G147200 chr6B 147960484 147963848 3364 False 6215.000000 6215 100.000000 1 3365 1 chr6B.!!$F1 3364
1 TraesCS6B01G147200 chr6B 566536557 566538298 1741 True 1855.000000 1855 86.236000 631 2367 1 chr6B.!!$R2 1736
2 TraesCS6B01G147200 chr6B 140450026 140451421 1395 True 638.500000 859 83.196500 997 2452 2 chr6B.!!$R5 1455
3 TraesCS6B01G147200 chr6B 140433435 140434368 933 True 381.500000 424 82.310000 1459 2452 2 chr6B.!!$R4 993
4 TraesCS6B01G147200 chr6B 140412284 140413210 926 True 375.500000 418 82.165000 1459 2446 2 chr6B.!!$R3 987
5 TraesCS6B01G147200 chr6D 379721072 379722830 1758 False 1864.000000 1864 86.130000 631 2378 1 chr6D.!!$F1 1747
6 TraesCS6B01G147200 chr6D 73587255 73590441 3186 False 1223.666667 3155 87.825667 327 3365 3 chr6D.!!$F2 3038
7 TraesCS6B01G147200 chr6D 65388645 65390042 1397 True 633.000000 822 83.097000 997 2452 2 chr6D.!!$R1 1455
8 TraesCS6B01G147200 chr6A 520871079 520872862 1783 True 1840.000000 1840 85.620000 605 2378 1 chr6A.!!$R1 1773
9 TraesCS6B01G147200 chr6A 90031973 90034181 2208 False 1663.500000 3035 92.630000 338 2499 2 chr6A.!!$F2 2161
10 TraesCS6B01G147200 chr6A 83362165 83363014 849 False 869.000000 869 85.463000 997 1831 1 chr6A.!!$F1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 515 0.032403 TGCTGCTGATTTGGTTGTGC 59.968 50.0 0.0 0.0 0.0 4.57 F
1928 2049 0.839946 ACCACCACTCCCTATGATGC 59.160 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2143 0.178767 CGAAGAGGGCATCCATCACA 59.821 55.0 0.0 0.0 34.83 3.58 R
2747 3069 0.032130 TCTGCCGTCATCCTTATCGC 59.968 55.0 0.0 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.683974 ATGGATTGCTGTTATCAGTGTTAC 57.316 37.500 2.85 0.00 43.05 2.50
25 26 5.555966 TGGATTGCTGTTATCAGTGTTACA 58.444 37.500 2.85 0.00 43.05 2.41
26 27 6.179756 TGGATTGCTGTTATCAGTGTTACAT 58.820 36.000 2.85 0.00 43.05 2.29
27 28 7.334858 TGGATTGCTGTTATCAGTGTTACATA 58.665 34.615 2.85 0.00 43.05 2.29
28 29 7.992608 TGGATTGCTGTTATCAGTGTTACATAT 59.007 33.333 2.85 0.00 43.05 1.78
29 30 8.840321 GGATTGCTGTTATCAGTGTTACATATT 58.160 33.333 2.85 0.00 43.05 1.28
32 33 9.838975 TTGCTGTTATCAGTGTTACATATTTTG 57.161 29.630 2.85 0.00 43.05 2.44
33 34 9.008965 TGCTGTTATCAGTGTTACATATTTTGT 57.991 29.630 2.85 0.00 43.05 2.83
34 35 9.840427 GCTGTTATCAGTGTTACATATTTTGTT 57.160 29.630 2.85 0.00 43.05 2.83
41 42 8.293867 TCAGTGTTACATATTTTGTTGGTTAGC 58.706 33.333 0.00 0.00 39.87 3.09
42 43 8.296713 CAGTGTTACATATTTTGTTGGTTAGCT 58.703 33.333 0.00 0.00 39.87 3.32
43 44 8.856103 AGTGTTACATATTTTGTTGGTTAGCTT 58.144 29.630 0.00 0.00 39.87 3.74
53 54 7.624360 TTTGTTGGTTAGCTTACATATCAGG 57.376 36.000 5.08 0.00 0.00 3.86
54 55 6.308015 TGTTGGTTAGCTTACATATCAGGT 57.692 37.500 5.08 0.00 0.00 4.00
55 56 6.346096 TGTTGGTTAGCTTACATATCAGGTC 58.654 40.000 5.08 0.00 0.00 3.85
56 57 6.070481 TGTTGGTTAGCTTACATATCAGGTCA 60.070 38.462 5.08 0.00 0.00 4.02
57 58 6.553953 TGGTTAGCTTACATATCAGGTCAA 57.446 37.500 5.08 0.00 0.00 3.18
58 59 7.136822 TGGTTAGCTTACATATCAGGTCAAT 57.863 36.000 5.08 0.00 0.00 2.57
59 60 8.257602 TGGTTAGCTTACATATCAGGTCAATA 57.742 34.615 5.08 0.00 0.00 1.90
60 61 8.880244 TGGTTAGCTTACATATCAGGTCAATAT 58.120 33.333 5.08 0.00 0.00 1.28
61 62 9.372369 GGTTAGCTTACATATCAGGTCAATATC 57.628 37.037 5.08 0.00 0.00 1.63
62 63 9.929180 GTTAGCTTACATATCAGGTCAATATCA 57.071 33.333 0.00 0.00 0.00 2.15
66 67 9.539825 GCTTACATATCAGGTCAATATCATAGG 57.460 37.037 0.00 0.00 0.00 2.57
67 68 9.539825 CTTACATATCAGGTCAATATCATAGGC 57.460 37.037 0.00 0.00 0.00 3.93
68 69 7.500629 ACATATCAGGTCAATATCATAGGCA 57.499 36.000 0.00 0.00 0.00 4.75
69 70 7.563020 ACATATCAGGTCAATATCATAGGCAG 58.437 38.462 0.00 0.00 0.00 4.85
70 71 7.401204 ACATATCAGGTCAATATCATAGGCAGA 59.599 37.037 0.00 0.00 0.00 4.26
71 72 5.735285 TCAGGTCAATATCATAGGCAGAG 57.265 43.478 0.00 0.00 0.00 3.35
72 73 5.150715 TCAGGTCAATATCATAGGCAGAGT 58.849 41.667 0.00 0.00 0.00 3.24
73 74 5.244851 TCAGGTCAATATCATAGGCAGAGTC 59.755 44.000 0.00 0.00 0.00 3.36
74 75 5.245751 CAGGTCAATATCATAGGCAGAGTCT 59.754 44.000 0.00 0.00 0.00 3.24
75 76 5.245751 AGGTCAATATCATAGGCAGAGTCTG 59.754 44.000 16.21 16.21 34.12 3.51
76 77 5.011533 GGTCAATATCATAGGCAGAGTCTGT 59.988 44.000 21.06 5.28 33.43 3.41
77 78 6.463614 GGTCAATATCATAGGCAGAGTCTGTT 60.464 42.308 21.06 12.34 33.43 3.16
78 79 7.255977 GGTCAATATCATAGGCAGAGTCTGTTA 60.256 40.741 21.06 13.99 33.43 2.41
79 80 8.310382 GTCAATATCATAGGCAGAGTCTGTTAT 58.690 37.037 21.06 15.45 33.43 1.89
80 81 8.526978 TCAATATCATAGGCAGAGTCTGTTATC 58.473 37.037 21.06 8.95 33.43 1.75
81 82 5.736951 ATCATAGGCAGAGTCTGTTATCC 57.263 43.478 21.06 13.36 33.43 2.59
82 83 4.809193 TCATAGGCAGAGTCTGTTATCCT 58.191 43.478 21.06 19.22 33.43 3.24
83 84 5.211973 TCATAGGCAGAGTCTGTTATCCTT 58.788 41.667 21.06 3.55 33.43 3.36
84 85 5.663106 TCATAGGCAGAGTCTGTTATCCTTT 59.337 40.000 21.06 10.96 33.43 3.11
85 86 4.917906 AGGCAGAGTCTGTTATCCTTTT 57.082 40.909 21.06 0.00 33.43 2.27
86 87 4.837972 AGGCAGAGTCTGTTATCCTTTTC 58.162 43.478 21.06 0.62 33.43 2.29
87 88 4.534103 AGGCAGAGTCTGTTATCCTTTTCT 59.466 41.667 21.06 0.00 33.43 2.52
88 89 5.013599 AGGCAGAGTCTGTTATCCTTTTCTT 59.986 40.000 21.06 0.00 33.43 2.52
89 90 5.123027 GGCAGAGTCTGTTATCCTTTTCTTG 59.877 44.000 21.06 0.00 33.43 3.02
90 91 5.703130 GCAGAGTCTGTTATCCTTTTCTTGT 59.297 40.000 21.06 0.00 33.43 3.16
91 92 6.128418 GCAGAGTCTGTTATCCTTTTCTTGTC 60.128 42.308 21.06 0.00 33.43 3.18
92 93 7.158021 CAGAGTCTGTTATCCTTTTCTTGTCT 58.842 38.462 12.28 0.00 0.00 3.41
93 94 7.117523 CAGAGTCTGTTATCCTTTTCTTGTCTG 59.882 40.741 12.28 0.00 0.00 3.51
94 95 6.831976 AGTCTGTTATCCTTTTCTTGTCTGT 58.168 36.000 0.00 0.00 0.00 3.41
95 96 7.283329 AGTCTGTTATCCTTTTCTTGTCTGTT 58.717 34.615 0.00 0.00 0.00 3.16
96 97 8.429641 AGTCTGTTATCCTTTTCTTGTCTGTTA 58.570 33.333 0.00 0.00 0.00 2.41
97 98 9.220767 GTCTGTTATCCTTTTCTTGTCTGTTAT 57.779 33.333 0.00 0.00 0.00 1.89
98 99 9.219603 TCTGTTATCCTTTTCTTGTCTGTTATG 57.780 33.333 0.00 0.00 0.00 1.90
99 100 8.918202 TGTTATCCTTTTCTTGTCTGTTATGT 57.082 30.769 0.00 0.00 0.00 2.29
103 104 8.779354 ATCCTTTTCTTGTCTGTTATGTAGTC 57.221 34.615 0.00 0.00 0.00 2.59
104 105 7.963532 TCCTTTTCTTGTCTGTTATGTAGTCT 58.036 34.615 0.00 0.00 0.00 3.24
105 106 9.085645 TCCTTTTCTTGTCTGTTATGTAGTCTA 57.914 33.333 0.00 0.00 0.00 2.59
106 107 9.877178 CCTTTTCTTGTCTGTTATGTAGTCTAT 57.123 33.333 0.00 0.00 0.00 1.98
133 134 7.610580 ATCCTGTCCTTAATTTTTGTTTCCA 57.389 32.000 0.00 0.00 0.00 3.53
134 135 7.610580 TCCTGTCCTTAATTTTTGTTTCCAT 57.389 32.000 0.00 0.00 0.00 3.41
135 136 8.028652 TCCTGTCCTTAATTTTTGTTTCCATT 57.971 30.769 0.00 0.00 0.00 3.16
136 137 9.148879 TCCTGTCCTTAATTTTTGTTTCCATTA 57.851 29.630 0.00 0.00 0.00 1.90
137 138 9.942850 CCTGTCCTTAATTTTTGTTTCCATTAT 57.057 29.630 0.00 0.00 0.00 1.28
163 164 9.613428 TTATAGTTGAATGGATTGAGGTAGTTG 57.387 33.333 0.00 0.00 0.00 3.16
164 165 5.880901 AGTTGAATGGATTGAGGTAGTTGT 58.119 37.500 0.00 0.00 0.00 3.32
165 166 6.306987 AGTTGAATGGATTGAGGTAGTTGTT 58.693 36.000 0.00 0.00 0.00 2.83
166 167 6.777580 AGTTGAATGGATTGAGGTAGTTGTTT 59.222 34.615 0.00 0.00 0.00 2.83
167 168 7.287696 AGTTGAATGGATTGAGGTAGTTGTTTT 59.712 33.333 0.00 0.00 0.00 2.43
168 169 7.595819 TGAATGGATTGAGGTAGTTGTTTTT 57.404 32.000 0.00 0.00 0.00 1.94
169 170 7.432869 TGAATGGATTGAGGTAGTTGTTTTTG 58.567 34.615 0.00 0.00 0.00 2.44
170 171 6.976934 ATGGATTGAGGTAGTTGTTTTTGT 57.023 33.333 0.00 0.00 0.00 2.83
171 172 6.783708 TGGATTGAGGTAGTTGTTTTTGTT 57.216 33.333 0.00 0.00 0.00 2.83
172 173 6.568869 TGGATTGAGGTAGTTGTTTTTGTTG 58.431 36.000 0.00 0.00 0.00 3.33
173 174 5.983118 GGATTGAGGTAGTTGTTTTTGTTGG 59.017 40.000 0.00 0.00 0.00 3.77
174 175 4.993029 TGAGGTAGTTGTTTTTGTTGGG 57.007 40.909 0.00 0.00 0.00 4.12
175 176 4.345854 TGAGGTAGTTGTTTTTGTTGGGT 58.654 39.130 0.00 0.00 0.00 4.51
176 177 4.773149 TGAGGTAGTTGTTTTTGTTGGGTT 59.227 37.500 0.00 0.00 0.00 4.11
177 178 5.246429 TGAGGTAGTTGTTTTTGTTGGGTTT 59.754 36.000 0.00 0.00 0.00 3.27
178 179 6.116711 AGGTAGTTGTTTTTGTTGGGTTTT 57.883 33.333 0.00 0.00 0.00 2.43
179 180 7.039223 TGAGGTAGTTGTTTTTGTTGGGTTTTA 60.039 33.333 0.00 0.00 0.00 1.52
180 181 7.098477 AGGTAGTTGTTTTTGTTGGGTTTTAC 58.902 34.615 0.00 0.00 0.00 2.01
181 182 6.872547 GGTAGTTGTTTTTGTTGGGTTTTACA 59.127 34.615 0.00 0.00 0.00 2.41
182 183 7.387122 GGTAGTTGTTTTTGTTGGGTTTTACAA 59.613 33.333 0.00 0.00 32.76 2.41
183 184 7.803279 AGTTGTTTTTGTTGGGTTTTACAAA 57.197 28.000 0.00 0.00 41.16 2.83
184 185 8.397575 AGTTGTTTTTGTTGGGTTTTACAAAT 57.602 26.923 0.00 0.00 42.07 2.32
185 186 8.851145 AGTTGTTTTTGTTGGGTTTTACAAATT 58.149 25.926 0.00 0.00 42.07 1.82
186 187 9.119329 GTTGTTTTTGTTGGGTTTTACAAATTC 57.881 29.630 0.00 0.00 42.07 2.17
187 188 8.391075 TGTTTTTGTTGGGTTTTACAAATTCA 57.609 26.923 0.00 0.00 42.07 2.57
188 189 8.507249 TGTTTTTGTTGGGTTTTACAAATTCAG 58.493 29.630 0.00 0.00 42.07 3.02
189 190 8.508062 GTTTTTGTTGGGTTTTACAAATTCAGT 58.492 29.630 0.00 0.00 42.07 3.41
190 191 8.622948 TTTTGTTGGGTTTTACAAATTCAGTT 57.377 26.923 0.00 0.00 42.07 3.16
191 192 8.622948 TTTGTTGGGTTTTACAAATTCAGTTT 57.377 26.923 0.00 0.00 38.82 2.66
192 193 8.622948 TTGTTGGGTTTTACAAATTCAGTTTT 57.377 26.923 0.00 0.00 31.75 2.43
193 194 9.720769 TTGTTGGGTTTTACAAATTCAGTTTTA 57.279 25.926 0.00 0.00 31.75 1.52
194 195 9.892130 TGTTGGGTTTTACAAATTCAGTTTTAT 57.108 25.926 0.00 0.00 0.00 1.40
208 209 9.918630 AATTCAGTTTTATCTTTGTTCATGGAG 57.081 29.630 0.00 0.00 0.00 3.86
209 210 7.452880 TCAGTTTTATCTTTGTTCATGGAGG 57.547 36.000 0.00 0.00 0.00 4.30
210 211 6.071952 TCAGTTTTATCTTTGTTCATGGAGGC 60.072 38.462 0.00 0.00 0.00 4.70
211 212 5.774690 AGTTTTATCTTTGTTCATGGAGGCA 59.225 36.000 0.00 0.00 0.00 4.75
212 213 6.438425 AGTTTTATCTTTGTTCATGGAGGCAT 59.562 34.615 0.00 0.00 0.00 4.40
213 214 5.840243 TTATCTTTGTTCATGGAGGCATG 57.160 39.130 0.00 0.00 0.00 4.06
214 215 1.820519 TCTTTGTTCATGGAGGCATGC 59.179 47.619 9.90 9.90 32.87 4.06
215 216 0.527113 TTTGTTCATGGAGGCATGCG 59.473 50.000 12.44 0.00 32.87 4.73
216 217 0.322366 TTGTTCATGGAGGCATGCGA 60.322 50.000 12.44 0.00 32.87 5.10
217 218 0.745486 TGTTCATGGAGGCATGCGAG 60.745 55.000 12.44 0.00 32.87 5.03
218 219 0.745845 GTTCATGGAGGCATGCGAGT 60.746 55.000 12.44 0.00 32.87 4.18
219 220 0.035152 TTCATGGAGGCATGCGAGTT 60.035 50.000 12.44 0.00 32.87 3.01
220 221 0.745486 TCATGGAGGCATGCGAGTTG 60.745 55.000 12.44 5.81 32.87 3.16
221 222 1.028330 CATGGAGGCATGCGAGTTGT 61.028 55.000 12.44 0.00 0.00 3.32
222 223 0.322816 ATGGAGGCATGCGAGTTGTT 60.323 50.000 12.44 0.00 0.00 2.83
223 224 1.236616 TGGAGGCATGCGAGTTGTTG 61.237 55.000 12.44 0.00 0.00 3.33
224 225 1.503542 GAGGCATGCGAGTTGTTGG 59.496 57.895 12.44 0.00 0.00 3.77
225 226 1.228245 AGGCATGCGAGTTGTTGGT 60.228 52.632 12.44 0.00 0.00 3.67
226 227 0.823356 AGGCATGCGAGTTGTTGGTT 60.823 50.000 12.44 0.00 0.00 3.67
227 228 0.664166 GGCATGCGAGTTGTTGGTTG 60.664 55.000 12.44 0.00 0.00 3.77
228 229 0.310543 GCATGCGAGTTGTTGGTTGA 59.689 50.000 0.00 0.00 0.00 3.18
229 230 1.268999 GCATGCGAGTTGTTGGTTGAA 60.269 47.619 0.00 0.00 0.00 2.69
230 231 2.797792 GCATGCGAGTTGTTGGTTGAAA 60.798 45.455 0.00 0.00 0.00 2.69
231 232 2.553079 TGCGAGTTGTTGGTTGAAAC 57.447 45.000 0.00 0.00 0.00 2.78
232 233 2.088423 TGCGAGTTGTTGGTTGAAACT 58.912 42.857 0.00 0.00 36.87 2.66
233 234 2.159448 TGCGAGTTGTTGGTTGAAACTG 60.159 45.455 0.00 0.00 34.37 3.16
234 235 2.159435 GCGAGTTGTTGGTTGAAACTGT 60.159 45.455 0.00 0.00 34.37 3.55
235 236 3.425404 CGAGTTGTTGGTTGAAACTGTG 58.575 45.455 0.00 0.00 34.37 3.66
236 237 3.179048 GAGTTGTTGGTTGAAACTGTGC 58.821 45.455 0.00 0.00 34.37 4.57
237 238 1.917303 GTTGTTGGTTGAAACTGTGCG 59.083 47.619 0.00 0.00 0.00 5.34
238 239 1.169577 TGTTGGTTGAAACTGTGCGT 58.830 45.000 0.00 0.00 0.00 5.24
239 240 1.135546 TGTTGGTTGAAACTGTGCGTG 60.136 47.619 0.00 0.00 0.00 5.34
240 241 0.179150 TTGGTTGAAACTGTGCGTGC 60.179 50.000 0.00 0.00 0.00 5.34
241 242 1.029408 TGGTTGAAACTGTGCGTGCT 61.029 50.000 0.00 0.00 0.00 4.40
242 243 0.100503 GGTTGAAACTGTGCGTGCTT 59.899 50.000 0.00 0.00 0.00 3.91
243 244 1.332375 GGTTGAAACTGTGCGTGCTTA 59.668 47.619 0.00 0.00 0.00 3.09
244 245 2.602217 GGTTGAAACTGTGCGTGCTTAG 60.602 50.000 0.00 0.00 0.00 2.18
245 246 1.948104 TGAAACTGTGCGTGCTTAGT 58.052 45.000 0.00 0.00 0.00 2.24
246 247 3.100658 TGAAACTGTGCGTGCTTAGTA 57.899 42.857 0.00 0.00 0.00 1.82
247 248 3.459145 TGAAACTGTGCGTGCTTAGTAA 58.541 40.909 0.00 0.00 0.00 2.24
248 249 4.062293 TGAAACTGTGCGTGCTTAGTAAT 58.938 39.130 0.00 0.00 0.00 1.89
249 250 4.513692 TGAAACTGTGCGTGCTTAGTAATT 59.486 37.500 0.00 0.00 0.00 1.40
250 251 5.697178 TGAAACTGTGCGTGCTTAGTAATTA 59.303 36.000 0.00 0.00 0.00 1.40
251 252 6.370442 TGAAACTGTGCGTGCTTAGTAATTAT 59.630 34.615 0.00 0.00 0.00 1.28
252 253 7.546316 TGAAACTGTGCGTGCTTAGTAATTATA 59.454 33.333 0.00 0.00 0.00 0.98
253 254 8.433421 AAACTGTGCGTGCTTAGTAATTATAT 57.567 30.769 0.00 0.00 0.00 0.86
254 255 9.537192 AAACTGTGCGTGCTTAGTAATTATATA 57.463 29.630 0.00 0.00 0.00 0.86
255 256 9.706691 AACTGTGCGTGCTTAGTAATTATATAT 57.293 29.630 0.00 0.00 0.00 0.86
256 257 9.355215 ACTGTGCGTGCTTAGTAATTATATATC 57.645 33.333 0.00 0.00 0.00 1.63
257 258 9.574458 CTGTGCGTGCTTAGTAATTATATATCT 57.426 33.333 0.00 0.00 0.00 1.98
258 259 9.353999 TGTGCGTGCTTAGTAATTATATATCTG 57.646 33.333 0.00 0.00 0.00 2.90
259 260 8.321716 GTGCGTGCTTAGTAATTATATATCTGC 58.678 37.037 0.00 0.00 0.00 4.26
260 261 8.032451 TGCGTGCTTAGTAATTATATATCTGCA 58.968 33.333 0.00 0.00 0.00 4.41
261 262 9.035607 GCGTGCTTAGTAATTATATATCTGCAT 57.964 33.333 0.00 0.00 0.00 3.96
277 278 4.797743 TCTGCATGTCTGGAGATAGTACT 58.202 43.478 0.00 0.00 43.99 2.73
278 279 5.204292 TCTGCATGTCTGGAGATAGTACTT 58.796 41.667 0.00 0.00 43.99 2.24
279 280 5.300539 TCTGCATGTCTGGAGATAGTACTTC 59.699 44.000 0.00 0.00 43.99 3.01
280 281 4.956075 TGCATGTCTGGAGATAGTACTTCA 59.044 41.667 0.00 0.00 0.00 3.02
281 282 5.600069 TGCATGTCTGGAGATAGTACTTCAT 59.400 40.000 0.00 0.00 0.00 2.57
282 283 6.098838 TGCATGTCTGGAGATAGTACTTCATT 59.901 38.462 0.00 0.00 0.00 2.57
283 284 6.989169 GCATGTCTGGAGATAGTACTTCATTT 59.011 38.462 0.00 0.00 0.00 2.32
284 285 8.144478 GCATGTCTGGAGATAGTACTTCATTTA 58.856 37.037 0.00 0.00 0.00 1.40
285 286 9.689976 CATGTCTGGAGATAGTACTTCATTTAG 57.310 37.037 0.00 0.00 0.00 1.85
286 287 7.717568 TGTCTGGAGATAGTACTTCATTTAGC 58.282 38.462 0.00 0.00 0.00 3.09
287 288 7.342026 TGTCTGGAGATAGTACTTCATTTAGCA 59.658 37.037 0.00 0.00 0.00 3.49
288 289 7.865385 GTCTGGAGATAGTACTTCATTTAGCAG 59.135 40.741 0.00 0.00 0.00 4.24
289 290 7.561722 TCTGGAGATAGTACTTCATTTAGCAGT 59.438 37.037 0.00 0.00 0.00 4.40
290 291 8.079211 TGGAGATAGTACTTCATTTAGCAGTT 57.921 34.615 0.00 0.00 0.00 3.16
291 292 9.197306 TGGAGATAGTACTTCATTTAGCAGTTA 57.803 33.333 0.00 0.00 0.00 2.24
358 361 7.283633 GCTTTTGCTAGTAAAATTTGTTGCTC 58.716 34.615 17.51 0.00 43.35 4.26
364 367 5.705609 AGTAAAATTTGTTGCTCGTGGAT 57.294 34.783 0.00 0.00 0.00 3.41
367 370 4.701956 AAATTTGTTGCTCGTGGATAGG 57.298 40.909 0.00 0.00 0.00 2.57
369 372 2.851263 TTGTTGCTCGTGGATAGGTT 57.149 45.000 0.00 0.00 0.00 3.50
401 406 6.217280 TGATACATGCCCCTTATGATATTGGA 59.783 38.462 0.00 0.00 0.00 3.53
402 407 4.927049 ACATGCCCCTTATGATATTGGAG 58.073 43.478 0.00 0.00 0.00 3.86
404 409 5.551583 ACATGCCCCTTATGATATTGGAGTA 59.448 40.000 0.00 0.00 0.00 2.59
405 410 5.762179 TGCCCCTTATGATATTGGAGTAG 57.238 43.478 0.00 0.00 0.00 2.57
406 411 5.162637 TGCCCCTTATGATATTGGAGTAGT 58.837 41.667 0.00 0.00 0.00 2.73
408 413 5.940470 GCCCCTTATGATATTGGAGTAGTTG 59.060 44.000 0.00 0.00 0.00 3.16
409 414 6.465894 GCCCCTTATGATATTGGAGTAGTTGT 60.466 42.308 0.00 0.00 0.00 3.32
447 463 8.834749 AGTTTAGTCCTATTGTCTTGAAGTTC 57.165 34.615 0.00 0.00 0.00 3.01
448 464 8.429641 AGTTTAGTCCTATTGTCTTGAAGTTCA 58.570 33.333 0.08 0.08 0.00 3.18
459 479 4.453478 GTCTTGAAGTTCATCATGTGCTGA 59.547 41.667 6.36 0.00 38.53 4.26
471 491 9.612066 TTCATCATGTGCTGACTATAAATGTTA 57.388 29.630 0.00 0.00 36.48 2.41
495 515 0.032403 TGCTGCTGATTTGGTTGTGC 59.968 50.000 0.00 0.00 0.00 4.57
498 518 2.823984 CTGCTGATTTGGTTGTGCAAA 58.176 42.857 0.00 0.00 0.00 3.68
750 811 2.440409 CAATCTGACAAAGTGGAGGGG 58.560 52.381 0.00 0.00 0.00 4.79
927 991 3.054503 GCCACTGCCTGTGCTCAG 61.055 66.667 8.84 8.84 44.92 3.35
1239 1324 2.242196 GGGAATCTCCTTGGTCAATGGA 59.758 50.000 0.00 0.00 36.57 3.41
1253 1338 2.173519 CAATGGAGCCCATGACACTTT 58.826 47.619 7.40 0.00 44.40 2.66
1254 1339 1.843368 ATGGAGCCCATGACACTTTG 58.157 50.000 5.97 0.00 43.39 2.77
1446 1531 1.059584 TGAAGAACCCACCAGAGGCA 61.060 55.000 0.00 0.00 0.00 4.75
1455 1540 1.479389 CCACCAGAGGCAAAGAAAGGT 60.479 52.381 0.00 0.00 0.00 3.50
1632 1720 2.372890 TGCTGGGGGCTCTGATGAG 61.373 63.158 0.00 0.00 42.96 2.90
1692 1807 1.284657 CTGCAGACGGTGATGATGAC 58.715 55.000 8.42 0.00 0.00 3.06
1928 2049 0.839946 ACCACCACTCCCTATGATGC 59.160 55.000 0.00 0.00 0.00 3.91
1990 2111 3.076092 CAGCTCAGCTCAAGGGGT 58.924 61.111 0.00 0.00 36.40 4.95
2005 2126 2.435059 GGTTGCTGTCCTCCTCGC 60.435 66.667 0.00 0.00 0.00 5.03
2022 2143 2.697644 CCCCTGCCCCTGAAGGAT 60.698 66.667 0.00 0.00 38.24 3.24
2061 2182 2.437359 GCGCTCTTCCATGGTGCT 60.437 61.111 12.58 0.00 34.21 4.40
2063 2184 2.758089 CGCTCTTCCATGGTGCTGC 61.758 63.158 12.58 11.45 0.00 5.25
2096 2217 2.738846 CGAAGGATGTGGTGAAGAACAG 59.261 50.000 0.00 0.00 0.00 3.16
2302 2423 1.684734 GCCGGTAAGGACTCCCAGA 60.685 63.158 1.90 0.00 45.00 3.86
2368 2492 3.251332 TCTGACGAGGAGTGAGACC 57.749 57.895 0.00 0.00 38.17 3.85
2386 2512 1.679311 CCTGTACTGCTTGCTCCCA 59.321 57.895 0.00 0.00 0.00 4.37
2390 2516 1.340017 TGTACTGCTTGCTCCCATTCC 60.340 52.381 0.00 0.00 0.00 3.01
2397 2523 0.326595 TTGCTCCCATTCCGCACTTA 59.673 50.000 0.00 0.00 32.71 2.24
2452 2578 8.581578 TCTTTTTAAGTTTGTTTGAAGTGTCCT 58.418 29.630 0.00 0.00 0.00 3.85
2468 2594 0.380733 TCCTTCATCGTCGTGGATCG 59.619 55.000 0.00 0.00 41.41 3.69
2469 2595 0.100682 CCTTCATCGTCGTGGATCGT 59.899 55.000 0.00 0.00 40.80 3.73
2471 2597 2.259618 CTTCATCGTCGTGGATCGTTT 58.740 47.619 0.00 0.00 40.80 3.60
2495 2621 4.060038 TGGAGTTTGAGTCAGTTGAGTC 57.940 45.455 9.51 9.51 43.15 3.36
2520 2656 1.960417 TTCAAAGCACCGTGTGATGA 58.040 45.000 8.04 0.00 35.23 2.92
2525 2661 1.896220 AGCACCGTGTGATGAACAAT 58.104 45.000 8.04 0.00 41.57 2.71
2540 2676 4.597079 TGAACAATTTGCGTTGAAGACTC 58.403 39.130 0.00 0.00 33.37 3.36
2553 2689 7.166970 TGCGTTGAAGACTCGTTATATATGAAC 59.833 37.037 0.00 0.00 0.00 3.18
2556 2692 8.480853 GTTGAAGACTCGTTATATATGAACTGC 58.519 37.037 0.00 0.00 0.00 4.40
2560 2696 7.364200 AGACTCGTTATATATGAACTGCTGTC 58.636 38.462 0.00 0.00 0.00 3.51
2561 2697 7.013369 AGACTCGTTATATATGAACTGCTGTCA 59.987 37.037 0.00 0.00 0.00 3.58
2565 2701 8.764287 TCGTTATATATGAACTGCTGTCATTTG 58.236 33.333 11.68 0.00 0.00 2.32
2572 2708 4.751600 TGAACTGCTGTCATTTGTAGTCTG 59.248 41.667 0.00 0.00 0.00 3.51
2591 2727 4.697352 GTCTGTTATATATGCTGCCTTGGG 59.303 45.833 0.00 0.00 0.00 4.12
2613 2759 0.166814 GCGCTGTCACTTGATTGTCC 59.833 55.000 0.00 0.00 0.00 4.02
2617 2763 3.745975 CGCTGTCACTTGATTGTCCTTTA 59.254 43.478 0.00 0.00 0.00 1.85
2647 2801 1.135112 TCCGTCATTGTCGTGGATCAG 60.135 52.381 0.00 0.00 0.00 2.90
2661 2815 4.201685 CGTGGATCAGTATTTGAAACGGAC 60.202 45.833 0.00 0.00 39.77 4.79
2662 2816 4.935808 GTGGATCAGTATTTGAAACGGACT 59.064 41.667 0.00 0.00 39.77 3.85
2675 2829 9.974980 ATTTGAAACGGACTAATGTTTGTAATT 57.025 25.926 0.00 0.00 38.35 1.40
2676 2830 9.804758 TTTGAAACGGACTAATGTTTGTAATTT 57.195 25.926 0.00 0.00 38.35 1.82
2677 2831 9.453325 TTGAAACGGACTAATGTTTGTAATTTC 57.547 29.630 0.00 0.00 38.35 2.17
2678 2832 8.077386 TGAAACGGACTAATGTTTGTAATTTCC 58.923 33.333 0.00 0.00 38.35 3.13
2679 2833 7.754851 AACGGACTAATGTTTGTAATTTCCT 57.245 32.000 0.00 0.00 0.00 3.36
2682 2836 8.635328 ACGGACTAATGTTTGTAATTTCCTTTT 58.365 29.630 0.00 0.00 0.00 2.27
2713 2867 8.581253 AATGACCTTTAAAGTTCCTATCCTTG 57.419 34.615 14.03 0.00 0.00 3.61
2734 3056 4.733165 TGACGGTATATAACTGCCTACCT 58.267 43.478 0.00 0.00 38.09 3.08
2736 3058 5.242393 TGACGGTATATAACTGCCTACCTTC 59.758 44.000 0.00 0.00 38.09 3.46
2737 3059 4.217118 ACGGTATATAACTGCCTACCTTCG 59.783 45.833 0.00 0.00 38.09 3.79
2738 3060 4.380233 CGGTATATAACTGCCTACCTTCGG 60.380 50.000 0.00 0.00 33.03 4.30
2749 3071 2.494918 CCTTCGGGTACTCTGGCG 59.505 66.667 0.00 0.00 0.00 5.69
2750 3072 2.050350 CCTTCGGGTACTCTGGCGA 61.050 63.158 0.00 0.00 0.00 5.54
2751 3073 1.392710 CCTTCGGGTACTCTGGCGAT 61.393 60.000 0.00 0.00 0.00 4.58
2752 3074 1.315690 CTTCGGGTACTCTGGCGATA 58.684 55.000 0.00 0.00 0.00 2.92
2753 3075 1.679680 CTTCGGGTACTCTGGCGATAA 59.320 52.381 0.00 0.00 0.00 1.75
2754 3076 1.315690 TCGGGTACTCTGGCGATAAG 58.684 55.000 0.00 0.00 0.00 1.73
2755 3077 0.314302 CGGGTACTCTGGCGATAAGG 59.686 60.000 0.00 0.00 0.00 2.69
2756 3078 1.700955 GGGTACTCTGGCGATAAGGA 58.299 55.000 0.00 0.00 0.00 3.36
2757 3079 2.249139 GGGTACTCTGGCGATAAGGAT 58.751 52.381 0.00 0.00 0.00 3.24
2758 3080 2.028930 GGGTACTCTGGCGATAAGGATG 60.029 54.545 0.00 0.00 0.00 3.51
2759 3081 2.891580 GGTACTCTGGCGATAAGGATGA 59.108 50.000 0.00 0.00 0.00 2.92
2760 3082 3.305471 GGTACTCTGGCGATAAGGATGAC 60.305 52.174 0.00 0.00 0.00 3.06
2761 3083 1.338337 ACTCTGGCGATAAGGATGACG 59.662 52.381 0.00 0.00 0.00 4.35
2762 3084 0.673985 TCTGGCGATAAGGATGACGG 59.326 55.000 0.00 0.00 0.00 4.79
2763 3085 3.952811 GGCGATAAGGATGACGGC 58.047 61.111 0.00 0.00 42.98 5.68
2764 3086 4.750460 GCGATAAGGATGACGGCA 57.250 55.556 0.00 0.00 0.00 5.69
2765 3087 2.522060 GCGATAAGGATGACGGCAG 58.478 57.895 0.00 0.00 0.00 4.85
2766 3088 0.032130 GCGATAAGGATGACGGCAGA 59.968 55.000 0.00 0.00 0.00 4.26
2767 3089 1.932604 GCGATAAGGATGACGGCAGAG 60.933 57.143 0.00 0.00 0.00 3.35
2768 3090 1.336332 CGATAAGGATGACGGCAGAGG 60.336 57.143 0.00 0.00 0.00 3.69
2769 3091 1.964223 GATAAGGATGACGGCAGAGGA 59.036 52.381 0.00 0.00 0.00 3.71
2770 3092 1.403814 TAAGGATGACGGCAGAGGAG 58.596 55.000 0.00 0.00 0.00 3.69
2771 3093 0.324738 AAGGATGACGGCAGAGGAGA 60.325 55.000 0.00 0.00 0.00 3.71
2772 3094 1.040339 AGGATGACGGCAGAGGAGAC 61.040 60.000 0.00 0.00 0.00 3.36
2773 3095 1.064946 GATGACGGCAGAGGAGACG 59.935 63.158 0.00 0.00 0.00 4.18
2774 3096 2.343163 GATGACGGCAGAGGAGACGG 62.343 65.000 0.00 0.00 0.00 4.79
2775 3097 3.063084 GACGGCAGAGGAGACGGT 61.063 66.667 0.00 0.00 0.00 4.83
2776 3098 3.053849 GACGGCAGAGGAGACGGTC 62.054 68.421 0.00 0.00 0.00 4.79
2777 3099 4.180946 CGGCAGAGGAGACGGTCG 62.181 72.222 1.89 0.00 0.00 4.79
2778 3100 3.827898 GGCAGAGGAGACGGTCGG 61.828 72.222 1.89 0.00 0.00 4.79
2779 3101 3.063084 GCAGAGGAGACGGTCGGT 61.063 66.667 1.89 0.00 0.00 4.69
2780 3102 3.053849 GCAGAGGAGACGGTCGGTC 62.054 68.421 1.89 2.39 46.45 4.79
2794 3116 3.400054 GGTCAGCCGGCCTTAGGT 61.400 66.667 26.15 0.00 0.00 3.08
2795 3117 2.669240 GTCAGCCGGCCTTAGGTT 59.331 61.111 26.15 0.00 0.00 3.50
2796 3118 1.002502 GTCAGCCGGCCTTAGGTTT 60.003 57.895 26.15 0.00 0.00 3.27
2797 3119 0.251073 GTCAGCCGGCCTTAGGTTTA 59.749 55.000 26.15 0.00 0.00 2.01
2798 3120 0.985760 TCAGCCGGCCTTAGGTTTAA 59.014 50.000 26.15 0.00 0.00 1.52
2799 3121 1.092348 CAGCCGGCCTTAGGTTTAAC 58.908 55.000 26.15 0.00 0.00 2.01
2800 3122 0.034767 AGCCGGCCTTAGGTTTAACC 60.035 55.000 26.15 5.91 38.99 2.85
2801 3123 1.033746 GCCGGCCTTAGGTTTAACCC 61.034 60.000 18.11 0.00 39.75 4.11
2802 3124 0.622136 CCGGCCTTAGGTTTAACCCT 59.378 55.000 10.93 0.00 39.75 4.34
2803 3125 1.005097 CCGGCCTTAGGTTTAACCCTT 59.995 52.381 10.93 0.00 39.75 3.95
2804 3126 2.089201 CGGCCTTAGGTTTAACCCTTG 58.911 52.381 10.93 0.94 39.75 3.61
2805 3127 2.290450 CGGCCTTAGGTTTAACCCTTGA 60.290 50.000 10.93 0.00 39.75 3.02
2806 3128 3.770046 GGCCTTAGGTTTAACCCTTGAA 58.230 45.455 10.93 0.00 39.75 2.69
2807 3129 4.154176 GGCCTTAGGTTTAACCCTTGAAA 58.846 43.478 10.93 0.00 39.75 2.69
2808 3130 4.021719 GGCCTTAGGTTTAACCCTTGAAAC 60.022 45.833 10.93 0.00 39.75 2.78
2816 3138 6.808008 GTTTAACCCTTGAAACCTAGGTAC 57.192 41.667 16.67 13.12 30.79 3.34
2817 3139 6.537355 GTTTAACCCTTGAAACCTAGGTACT 58.463 40.000 16.67 5.36 34.37 2.73
2818 3140 7.679783 GTTTAACCCTTGAAACCTAGGTACTA 58.320 38.462 16.67 8.72 40.05 1.82
2819 3141 7.870426 TTAACCCTTGAAACCTAGGTACTAA 57.130 36.000 16.67 9.44 42.17 2.24
2820 3142 5.752036 ACCCTTGAAACCTAGGTACTAAC 57.248 43.478 16.67 5.87 42.17 2.34
2821 3143 5.409712 ACCCTTGAAACCTAGGTACTAACT 58.590 41.667 16.67 0.00 42.17 2.24
2822 3144 5.483231 ACCCTTGAAACCTAGGTACTAACTC 59.517 44.000 16.67 6.03 42.17 3.01
2823 3145 5.393896 CCCTTGAAACCTAGGTACTAACTCG 60.394 48.000 16.67 0.00 42.17 4.18
2824 3146 5.184671 CCTTGAAACCTAGGTACTAACTCGT 59.815 44.000 16.67 0.00 42.17 4.18
2825 3147 6.375455 CCTTGAAACCTAGGTACTAACTCGTA 59.625 42.308 16.67 0.00 42.17 3.43
2826 3148 7.094205 CCTTGAAACCTAGGTACTAACTCGTAA 60.094 40.741 16.67 0.32 42.17 3.18
2827 3149 7.759489 TGAAACCTAGGTACTAACTCGTAAA 57.241 36.000 16.67 0.00 42.17 2.01
2828 3150 7.593825 TGAAACCTAGGTACTAACTCGTAAAC 58.406 38.462 16.67 0.00 42.17 2.01
2829 3151 7.230510 TGAAACCTAGGTACTAACTCGTAAACA 59.769 37.037 16.67 0.00 42.17 2.83
2830 3152 7.524717 AACCTAGGTACTAACTCGTAAACAA 57.475 36.000 16.67 0.00 42.17 2.83
2831 3153 7.524717 ACCTAGGTACTAACTCGTAAACAAA 57.475 36.000 14.41 0.00 42.17 2.83
2832 3154 8.127150 ACCTAGGTACTAACTCGTAAACAAAT 57.873 34.615 14.41 0.00 42.17 2.32
2833 3155 9.243105 ACCTAGGTACTAACTCGTAAACAAATA 57.757 33.333 14.41 0.00 42.17 1.40
2841 3163 9.962759 ACTAACTCGTAAACAAATATAAAAGCG 57.037 29.630 0.00 0.00 0.00 4.68
2842 3164 9.962759 CTAACTCGTAAACAAATATAAAAGCGT 57.037 29.630 0.00 0.00 0.00 5.07
2844 3166 9.667989 AACTCGTAAACAAATATAAAAGCGTTT 57.332 25.926 2.53 2.53 0.00 3.60
2860 3182 8.828688 AAAAGCGTTTAGATCACTACTTTAGT 57.171 30.769 0.00 0.00 40.28 2.24
2861 3183 9.918630 AAAAGCGTTTAGATCACTACTTTAGTA 57.081 29.630 0.00 0.00 37.23 1.82
2862 3184 9.918630 AAAGCGTTTAGATCACTACTTTAGTAA 57.081 29.630 0.00 0.00 37.23 2.24
2864 3186 9.733219 AGCGTTTAGATCACTACTTTAGTAATC 57.267 33.333 0.00 0.00 37.23 1.75
2865 3187 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
2895 3217 9.832445 TGCTTTTATATTAGTTTACAGAGGGAG 57.168 33.333 0.00 0.00 0.00 4.30
2896 3218 9.833917 GCTTTTATATTAGTTTACAGAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
2909 3231 8.930846 TTACAGAGGGAGTATTATACTGTACC 57.069 38.462 9.87 9.00 39.59 3.34
2910 3232 6.002704 ACAGAGGGAGTATTATACTGTACCG 58.997 44.000 9.87 0.86 39.59 4.02
2911 3233 5.008980 AGAGGGAGTATTATACTGTACCGC 58.991 45.833 9.87 10.39 39.59 5.68
2912 3234 4.085009 AGGGAGTATTATACTGTACCGCC 58.915 47.826 9.87 3.56 39.59 6.13
2913 3235 3.119708 GGGAGTATTATACTGTACCGCCG 60.120 52.174 9.87 0.00 39.59 6.46
2914 3236 3.503748 GGAGTATTATACTGTACCGCCGT 59.496 47.826 9.87 0.00 39.59 5.68
2915 3237 4.695455 GGAGTATTATACTGTACCGCCGTA 59.305 45.833 9.87 0.00 39.59 4.02
2916 3238 5.181245 GGAGTATTATACTGTACCGCCGTAA 59.819 44.000 9.87 0.00 39.59 3.18
2917 3239 6.002062 AGTATTATACTGTACCGCCGTAAC 57.998 41.667 3.83 0.00 37.69 2.50
2918 3240 4.916983 ATTATACTGTACCGCCGTAACA 57.083 40.909 0.00 0.00 0.00 2.41
2919 3241 4.710423 TTATACTGTACCGCCGTAACAA 57.290 40.909 0.00 0.00 0.00 2.83
2920 3242 3.591196 ATACTGTACCGCCGTAACAAA 57.409 42.857 0.00 0.00 0.00 2.83
2921 3243 2.237393 ACTGTACCGCCGTAACAAAA 57.763 45.000 0.00 0.00 0.00 2.44
2922 3244 2.769893 ACTGTACCGCCGTAACAAAAT 58.230 42.857 0.00 0.00 0.00 1.82
2923 3245 3.924144 ACTGTACCGCCGTAACAAAATA 58.076 40.909 0.00 0.00 0.00 1.40
2924 3246 4.506758 ACTGTACCGCCGTAACAAAATAT 58.493 39.130 0.00 0.00 0.00 1.28
2925 3247 4.937015 ACTGTACCGCCGTAACAAAATATT 59.063 37.500 0.00 0.00 0.00 1.28
2926 3248 5.063817 ACTGTACCGCCGTAACAAAATATTC 59.936 40.000 0.00 0.00 0.00 1.75
2927 3249 5.177326 TGTACCGCCGTAACAAAATATTCT 58.823 37.500 0.00 0.00 0.00 2.40
2928 3250 4.870221 ACCGCCGTAACAAAATATTCTC 57.130 40.909 0.00 0.00 0.00 2.87
2929 3251 3.307782 ACCGCCGTAACAAAATATTCTCG 59.692 43.478 0.00 0.00 0.00 4.04
2930 3252 3.302870 CCGCCGTAACAAAATATTCTCGG 60.303 47.826 0.00 0.00 39.71 4.63
2931 3253 3.307782 CGCCGTAACAAAATATTCTCGGT 59.692 43.478 0.00 0.00 39.07 4.69
2932 3254 4.584394 GCCGTAACAAAATATTCTCGGTG 58.416 43.478 0.00 0.00 39.07 4.94
2933 3255 4.495184 GCCGTAACAAAATATTCTCGGTGG 60.495 45.833 0.00 0.00 39.07 4.61
2934 3256 4.632688 CCGTAACAAAATATTCTCGGTGGT 59.367 41.667 0.00 0.00 33.39 4.16
2935 3257 5.811613 CCGTAACAAAATATTCTCGGTGGTA 59.188 40.000 0.00 0.00 33.39 3.25
2936 3258 6.313411 CCGTAACAAAATATTCTCGGTGGTAA 59.687 38.462 0.00 0.00 33.39 2.85
2939 3261 4.638865 ACAAAATATTCTCGGTGGTAAGGC 59.361 41.667 0.00 0.00 0.00 4.35
2942 3264 2.332063 ATTCTCGGTGGTAAGGCATG 57.668 50.000 0.00 0.00 0.00 4.06
2943 3265 0.981183 TTCTCGGTGGTAAGGCATGT 59.019 50.000 0.00 0.00 0.00 3.21
2947 3269 1.903860 TCGGTGGTAAGGCATGTAACT 59.096 47.619 0.00 0.00 0.00 2.24
2952 3274 4.161754 GGTGGTAAGGCATGTAACTCTACT 59.838 45.833 0.00 0.00 0.00 2.57
2953 3275 5.338137 GGTGGTAAGGCATGTAACTCTACTT 60.338 44.000 0.00 0.00 0.00 2.24
2954 3276 5.581085 GTGGTAAGGCATGTAACTCTACTTG 59.419 44.000 0.00 0.00 36.64 3.16
2962 3284 5.351740 GCATGTAACTCTACTTGAAAGGTCC 59.648 44.000 0.00 0.00 35.97 4.46
2963 3285 5.479124 TGTAACTCTACTTGAAAGGTCCC 57.521 43.478 0.00 0.00 0.00 4.46
2965 3287 4.625607 AACTCTACTTGAAAGGTCCCTG 57.374 45.455 0.00 0.00 0.00 4.45
2969 3291 1.374947 CTTGAAAGGTCCCTGGCGA 59.625 57.895 0.00 0.00 0.00 5.54
2972 3294 0.539986 TGAAAGGTCCCTGGCGATAC 59.460 55.000 0.00 0.00 0.00 2.24
2975 3297 3.152400 GGTCCCTGGCGATACGGT 61.152 66.667 0.00 0.00 0.00 4.83
2976 3298 1.829533 GGTCCCTGGCGATACGGTA 60.830 63.158 0.00 0.00 0.00 4.02
2977 3299 1.394266 GGTCCCTGGCGATACGGTAA 61.394 60.000 0.00 0.00 0.00 2.85
2979 3301 0.963962 TCCCTGGCGATACGGTAATC 59.036 55.000 0.00 0.00 0.00 1.75
2980 3302 0.966920 CCCTGGCGATACGGTAATCT 59.033 55.000 0.00 0.00 0.00 2.40
2981 3303 2.165167 CCCTGGCGATACGGTAATCTA 58.835 52.381 0.00 0.00 0.00 1.98
2982 3304 2.094854 CCCTGGCGATACGGTAATCTAC 60.095 54.545 0.00 0.00 0.00 2.59
2983 3305 2.094854 CCTGGCGATACGGTAATCTACC 60.095 54.545 0.00 0.00 45.52 3.18
2984 3306 1.888512 TGGCGATACGGTAATCTACCC 59.111 52.381 0.00 0.00 46.27 3.69
2993 3333 9.118300 CGATACGGTAATCTACCCTATAATTCT 57.882 37.037 0.00 0.00 46.27 2.40
3077 3459 4.942483 TCACACATCACAATATGCATCACA 59.058 37.500 0.19 0.00 0.00 3.58
3080 3462 5.032220 CACATCACAATATGCATCACACAC 58.968 41.667 0.19 0.00 0.00 3.82
3082 3464 5.183522 ACATCACAATATGCATCACACACAA 59.816 36.000 0.19 0.00 0.00 3.33
3086 3468 7.824672 TCACAATATGCATCACACACAAATAA 58.175 30.769 0.19 0.00 0.00 1.40
3088 3470 9.089601 CACAATATGCATCACACACAAATAAAT 57.910 29.630 0.19 0.00 0.00 1.40
3097 3499 9.616634 CATCACACACAAATAAATAGCATATCC 57.383 33.333 0.00 0.00 0.00 2.59
3101 3503 8.128582 ACACACAAATAAATAGCATATCCAACG 58.871 33.333 0.00 0.00 0.00 4.10
3142 3570 4.006319 AGCCAACATAAGTTCTGAAGCTC 58.994 43.478 0.00 0.00 35.28 4.09
3152 3580 0.035881 TCTGAAGCTCAGCACCAAGG 59.964 55.000 0.00 0.00 43.95 3.61
3155 3583 1.294659 GAAGCTCAGCACCAAGGTCG 61.295 60.000 0.00 0.00 0.00 4.79
3157 3585 2.029844 GCTCAGCACCAAGGTCGAC 61.030 63.158 7.13 7.13 0.00 4.20
3158 3586 1.734477 CTCAGCACCAAGGTCGACG 60.734 63.158 9.92 0.00 0.00 5.12
3162 3590 3.041940 CACCAAGGTCGACGTGCC 61.042 66.667 12.13 0.00 0.00 5.01
3163 3591 3.231736 ACCAAGGTCGACGTGCCT 61.232 61.111 12.13 0.00 36.51 4.75
3176 3604 3.707793 GACGTGCCTGAATACTAGAAGG 58.292 50.000 0.00 0.00 0.00 3.46
3194 3622 2.537143 AGGGAAGTAAGTGACCATCGT 58.463 47.619 0.00 0.00 0.00 3.73
3209 3637 2.482664 CCATCGTCACTTCCCTCATCTG 60.483 54.545 0.00 0.00 0.00 2.90
3217 3645 1.558756 CTTCCCTCATCTGGCTCAACT 59.441 52.381 0.00 0.00 0.00 3.16
3219 3647 1.556911 TCCCTCATCTGGCTCAACTTC 59.443 52.381 0.00 0.00 0.00 3.01
3237 3665 2.969628 TCCGCTTCTTCCTCATCTTC 57.030 50.000 0.00 0.00 0.00 2.87
3240 3668 1.474143 CGCTTCTTCCTCATCTTCCCC 60.474 57.143 0.00 0.00 0.00 4.81
3243 3671 0.338467 TCTTCCTCATCTTCCCCGGA 59.662 55.000 0.73 0.00 0.00 5.14
3246 3674 0.042731 TCCTCATCTTCCCCGGACTT 59.957 55.000 0.73 0.00 0.00 3.01
3258 3686 1.361668 CCGGACTTCTCAACATGGCG 61.362 60.000 0.00 0.00 0.00 5.69
3261 3689 1.066858 GGACTTCTCAACATGGCGAGA 60.067 52.381 11.20 11.20 36.50 4.04
3266 3694 1.069978 TCTCAACATGGCGAGACAACA 59.930 47.619 11.20 0.00 33.37 3.33
3271 3699 1.073025 ATGGCGAGACAACAAGGCA 59.927 52.632 0.00 0.00 43.15 4.75
3287 3715 1.429423 GCAGCATGGCTAACGGAAC 59.571 57.895 0.00 0.00 36.40 3.62
3294 3722 3.497031 GCTAACGGAACCTGCGCC 61.497 66.667 4.18 0.00 33.30 6.53
3312 3740 4.115199 GGCATGGCTCGGGGAAGT 62.115 66.667 12.86 0.00 0.00 3.01
3335 3763 5.746307 GACGATATGTCCACTAGTGTGTA 57.254 43.478 21.18 7.32 42.04 2.90
3341 3769 4.168922 TGTCCACTAGTGTGTATTGACG 57.831 45.455 21.18 3.10 42.34 4.35
3345 3773 2.094182 CACTAGTGTGTATTGACGGGCT 60.094 50.000 15.06 0.00 39.24 5.19
3354 3782 1.717032 ATTGACGGGCTAGGAGCATA 58.283 50.000 0.21 0.00 44.75 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.334858 TGTAACACTGATAACAGCAATCCATA 58.665 34.615 0.00 0.00 46.95 2.74
1 2 6.179756 TGTAACACTGATAACAGCAATCCAT 58.820 36.000 0.00 0.00 46.95 3.41
2 3 5.555966 TGTAACACTGATAACAGCAATCCA 58.444 37.500 0.00 0.00 46.95 3.41
3 4 6.683974 ATGTAACACTGATAACAGCAATCC 57.316 37.500 0.00 0.00 46.95 3.01
6 7 9.838975 CAAAATATGTAACACTGATAACAGCAA 57.161 29.630 0.00 0.00 46.95 3.91
7 8 9.008965 ACAAAATATGTAACACTGATAACAGCA 57.991 29.630 0.00 0.00 43.33 4.41
8 9 9.840427 AACAAAATATGTAACACTGATAACAGC 57.160 29.630 0.00 0.00 43.90 4.40
15 16 8.293867 GCTAACCAACAAAATATGTAACACTGA 58.706 33.333 0.00 0.00 42.99 3.41
16 17 8.296713 AGCTAACCAACAAAATATGTAACACTG 58.703 33.333 0.00 0.00 42.99 3.66
17 18 8.404107 AGCTAACCAACAAAATATGTAACACT 57.596 30.769 0.00 0.00 42.99 3.55
27 28 8.686334 CCTGATATGTAAGCTAACCAACAAAAT 58.314 33.333 0.00 0.00 0.00 1.82
28 29 7.668052 ACCTGATATGTAAGCTAACCAACAAAA 59.332 33.333 0.00 0.00 0.00 2.44
29 30 7.172342 ACCTGATATGTAAGCTAACCAACAAA 58.828 34.615 0.00 0.00 0.00 2.83
30 31 6.717289 ACCTGATATGTAAGCTAACCAACAA 58.283 36.000 0.00 0.00 0.00 2.83
31 32 6.070481 TGACCTGATATGTAAGCTAACCAACA 60.070 38.462 0.00 0.00 0.00 3.33
32 33 6.346096 TGACCTGATATGTAAGCTAACCAAC 58.654 40.000 0.00 0.00 0.00 3.77
33 34 6.553953 TGACCTGATATGTAAGCTAACCAA 57.446 37.500 0.00 0.00 0.00 3.67
34 35 6.553953 TTGACCTGATATGTAAGCTAACCA 57.446 37.500 0.00 0.00 0.00 3.67
35 36 9.372369 GATATTGACCTGATATGTAAGCTAACC 57.628 37.037 0.00 0.00 0.00 2.85
36 37 9.929180 TGATATTGACCTGATATGTAAGCTAAC 57.071 33.333 0.00 0.00 0.00 2.34
40 41 9.539825 CCTATGATATTGACCTGATATGTAAGC 57.460 37.037 0.00 0.00 0.00 3.09
41 42 9.539825 GCCTATGATATTGACCTGATATGTAAG 57.460 37.037 0.00 0.00 0.00 2.34
42 43 9.045745 TGCCTATGATATTGACCTGATATGTAA 57.954 33.333 0.00 0.00 0.00 2.41
43 44 8.608185 TGCCTATGATATTGACCTGATATGTA 57.392 34.615 0.00 0.00 0.00 2.29
44 45 7.401204 TCTGCCTATGATATTGACCTGATATGT 59.599 37.037 0.00 0.00 0.00 2.29
45 46 7.789026 TCTGCCTATGATATTGACCTGATATG 58.211 38.462 0.00 0.00 0.00 1.78
46 47 7.622878 ACTCTGCCTATGATATTGACCTGATAT 59.377 37.037 0.00 0.00 0.00 1.63
47 48 6.956435 ACTCTGCCTATGATATTGACCTGATA 59.044 38.462 0.00 0.00 0.00 2.15
48 49 5.784390 ACTCTGCCTATGATATTGACCTGAT 59.216 40.000 0.00 0.00 0.00 2.90
49 50 5.150715 ACTCTGCCTATGATATTGACCTGA 58.849 41.667 0.00 0.00 0.00 3.86
50 51 5.245751 AGACTCTGCCTATGATATTGACCTG 59.754 44.000 0.00 0.00 0.00 4.00
51 52 5.245751 CAGACTCTGCCTATGATATTGACCT 59.754 44.000 0.00 0.00 0.00 3.85
52 53 5.011533 ACAGACTCTGCCTATGATATTGACC 59.988 44.000 5.92 0.00 34.37 4.02
53 54 6.095432 ACAGACTCTGCCTATGATATTGAC 57.905 41.667 5.92 0.00 34.37 3.18
54 55 6.737720 AACAGACTCTGCCTATGATATTGA 57.262 37.500 5.92 0.00 34.37 2.57
55 56 7.763528 GGATAACAGACTCTGCCTATGATATTG 59.236 40.741 5.92 0.00 34.37 1.90
56 57 7.677745 AGGATAACAGACTCTGCCTATGATATT 59.322 37.037 5.92 0.00 34.37 1.28
57 58 7.188381 AGGATAACAGACTCTGCCTATGATAT 58.812 38.462 5.92 0.00 34.37 1.63
58 59 6.556639 AGGATAACAGACTCTGCCTATGATA 58.443 40.000 5.92 0.00 34.37 2.15
59 60 5.401750 AGGATAACAGACTCTGCCTATGAT 58.598 41.667 5.92 0.00 34.37 2.45
60 61 4.809193 AGGATAACAGACTCTGCCTATGA 58.191 43.478 5.92 0.00 34.37 2.15
61 62 5.543507 AAGGATAACAGACTCTGCCTATG 57.456 43.478 5.92 0.00 34.37 2.23
62 63 6.385467 AGAAAAGGATAACAGACTCTGCCTAT 59.615 38.462 5.92 3.81 34.37 2.57
63 64 5.721960 AGAAAAGGATAACAGACTCTGCCTA 59.278 40.000 5.92 0.00 34.37 3.93
64 65 4.534103 AGAAAAGGATAACAGACTCTGCCT 59.466 41.667 5.92 1.84 34.37 4.75
65 66 4.837972 AGAAAAGGATAACAGACTCTGCC 58.162 43.478 5.92 0.00 34.37 4.85
66 67 5.703130 ACAAGAAAAGGATAACAGACTCTGC 59.297 40.000 5.92 0.00 34.37 4.26
67 68 7.117523 CAGACAAGAAAAGGATAACAGACTCTG 59.882 40.741 4.36 4.36 37.52 3.35
68 69 7.158021 CAGACAAGAAAAGGATAACAGACTCT 58.842 38.462 0.00 0.00 0.00 3.24
69 70 6.931840 ACAGACAAGAAAAGGATAACAGACTC 59.068 38.462 0.00 0.00 0.00 3.36
70 71 6.831976 ACAGACAAGAAAAGGATAACAGACT 58.168 36.000 0.00 0.00 0.00 3.24
71 72 7.497925 AACAGACAAGAAAAGGATAACAGAC 57.502 36.000 0.00 0.00 0.00 3.51
72 73 9.219603 CATAACAGACAAGAAAAGGATAACAGA 57.780 33.333 0.00 0.00 0.00 3.41
73 74 9.003658 ACATAACAGACAAGAAAAGGATAACAG 57.996 33.333 0.00 0.00 0.00 3.16
74 75 8.918202 ACATAACAGACAAGAAAAGGATAACA 57.082 30.769 0.00 0.00 0.00 2.41
77 78 9.871238 GACTACATAACAGACAAGAAAAGGATA 57.129 33.333 0.00 0.00 0.00 2.59
78 79 8.598041 AGACTACATAACAGACAAGAAAAGGAT 58.402 33.333 0.00 0.00 0.00 3.24
79 80 7.963532 AGACTACATAACAGACAAGAAAAGGA 58.036 34.615 0.00 0.00 0.00 3.36
80 81 9.877178 ATAGACTACATAACAGACAAGAAAAGG 57.123 33.333 0.00 0.00 0.00 3.11
107 108 9.320295 TGGAAACAAAAATTAAGGACAGGATAT 57.680 29.630 0.00 0.00 37.44 1.63
108 109 8.713708 TGGAAACAAAAATTAAGGACAGGATA 57.286 30.769 0.00 0.00 37.44 2.59
109 110 7.610580 TGGAAACAAAAATTAAGGACAGGAT 57.389 32.000 0.00 0.00 37.44 3.24
137 138 9.613428 CAACTACCTCAATCCATTCAACTATAA 57.387 33.333 0.00 0.00 0.00 0.98
138 139 8.768397 ACAACTACCTCAATCCATTCAACTATA 58.232 33.333 0.00 0.00 0.00 1.31
139 140 7.633789 ACAACTACCTCAATCCATTCAACTAT 58.366 34.615 0.00 0.00 0.00 2.12
140 141 7.016153 ACAACTACCTCAATCCATTCAACTA 57.984 36.000 0.00 0.00 0.00 2.24
141 142 5.880901 ACAACTACCTCAATCCATTCAACT 58.119 37.500 0.00 0.00 0.00 3.16
142 143 6.575162 AACAACTACCTCAATCCATTCAAC 57.425 37.500 0.00 0.00 0.00 3.18
143 144 7.595819 AAAACAACTACCTCAATCCATTCAA 57.404 32.000 0.00 0.00 0.00 2.69
144 145 7.069331 ACAAAAACAACTACCTCAATCCATTCA 59.931 33.333 0.00 0.00 0.00 2.57
145 146 7.433680 ACAAAAACAACTACCTCAATCCATTC 58.566 34.615 0.00 0.00 0.00 2.67
146 147 7.360113 ACAAAAACAACTACCTCAATCCATT 57.640 32.000 0.00 0.00 0.00 3.16
147 148 6.976934 ACAAAAACAACTACCTCAATCCAT 57.023 33.333 0.00 0.00 0.00 3.41
148 149 6.406400 CCAACAAAAACAACTACCTCAATCCA 60.406 38.462 0.00 0.00 0.00 3.41
149 150 5.983118 CCAACAAAAACAACTACCTCAATCC 59.017 40.000 0.00 0.00 0.00 3.01
150 151 5.983118 CCCAACAAAAACAACTACCTCAATC 59.017 40.000 0.00 0.00 0.00 2.67
151 152 5.423931 ACCCAACAAAAACAACTACCTCAAT 59.576 36.000 0.00 0.00 0.00 2.57
152 153 4.773149 ACCCAACAAAAACAACTACCTCAA 59.227 37.500 0.00 0.00 0.00 3.02
153 154 4.345854 ACCCAACAAAAACAACTACCTCA 58.654 39.130 0.00 0.00 0.00 3.86
154 155 4.994907 ACCCAACAAAAACAACTACCTC 57.005 40.909 0.00 0.00 0.00 3.85
155 156 5.748670 AAACCCAACAAAAACAACTACCT 57.251 34.783 0.00 0.00 0.00 3.08
156 157 6.872547 TGTAAAACCCAACAAAAACAACTACC 59.127 34.615 0.00 0.00 0.00 3.18
157 158 7.886405 TGTAAAACCCAACAAAAACAACTAC 57.114 32.000 0.00 0.00 0.00 2.73
158 159 8.897872 TTTGTAAAACCCAACAAAAACAACTA 57.102 26.923 0.00 0.00 41.34 2.24
159 160 7.803279 TTTGTAAAACCCAACAAAAACAACT 57.197 28.000 0.00 0.00 41.34 3.16
160 161 9.119329 GAATTTGTAAAACCCAACAAAAACAAC 57.881 29.630 4.90 0.00 45.69 3.32
161 162 8.846211 TGAATTTGTAAAACCCAACAAAAACAA 58.154 25.926 4.90 0.00 45.69 2.83
162 163 8.391075 TGAATTTGTAAAACCCAACAAAAACA 57.609 26.923 4.90 5.80 45.69 2.83
163 164 8.508062 ACTGAATTTGTAAAACCCAACAAAAAC 58.492 29.630 4.90 3.72 45.69 2.43
164 165 8.622948 ACTGAATTTGTAAAACCCAACAAAAA 57.377 26.923 4.90 0.00 45.69 1.94
165 166 8.622948 AACTGAATTTGTAAAACCCAACAAAA 57.377 26.923 4.90 0.00 45.69 2.44
166 167 8.622948 AAACTGAATTTGTAAAACCCAACAAA 57.377 26.923 3.40 3.40 46.37 2.83
167 168 8.622948 AAAACTGAATTTGTAAAACCCAACAA 57.377 26.923 0.00 0.00 33.92 2.83
168 169 9.892130 ATAAAACTGAATTTGTAAAACCCAACA 57.108 25.926 0.00 0.00 0.00 3.33
182 183 9.918630 CTCCATGAACAAAGATAAAACTGAATT 57.081 29.630 0.00 0.00 0.00 2.17
183 184 8.526147 CCTCCATGAACAAAGATAAAACTGAAT 58.474 33.333 0.00 0.00 0.00 2.57
184 185 7.523709 GCCTCCATGAACAAAGATAAAACTGAA 60.524 37.037 0.00 0.00 0.00 3.02
185 186 6.071952 GCCTCCATGAACAAAGATAAAACTGA 60.072 38.462 0.00 0.00 0.00 3.41
186 187 6.095377 GCCTCCATGAACAAAGATAAAACTG 58.905 40.000 0.00 0.00 0.00 3.16
187 188 5.774690 TGCCTCCATGAACAAAGATAAAACT 59.225 36.000 0.00 0.00 0.00 2.66
188 189 6.024552 TGCCTCCATGAACAAAGATAAAAC 57.975 37.500 0.00 0.00 0.00 2.43
189 190 6.855763 ATGCCTCCATGAACAAAGATAAAA 57.144 33.333 0.00 0.00 0.00 1.52
203 204 0.322816 AACAACTCGCATGCCTCCAT 60.323 50.000 13.15 0.00 0.00 3.41
204 205 1.073025 AACAACTCGCATGCCTCCA 59.927 52.632 13.15 0.00 0.00 3.86
205 206 1.503542 CAACAACTCGCATGCCTCC 59.496 57.895 13.15 0.00 0.00 4.30
206 207 1.237285 ACCAACAACTCGCATGCCTC 61.237 55.000 13.15 0.00 0.00 4.70
207 208 0.823356 AACCAACAACTCGCATGCCT 60.823 50.000 13.15 0.00 0.00 4.75
208 209 0.664166 CAACCAACAACTCGCATGCC 60.664 55.000 13.15 0.00 0.00 4.40
209 210 0.310543 TCAACCAACAACTCGCATGC 59.689 50.000 7.91 7.91 0.00 4.06
210 211 2.772568 TTCAACCAACAACTCGCATG 57.227 45.000 0.00 0.00 0.00 4.06
211 212 2.687935 AGTTTCAACCAACAACTCGCAT 59.312 40.909 0.00 0.00 0.00 4.73
212 213 2.088423 AGTTTCAACCAACAACTCGCA 58.912 42.857 0.00 0.00 0.00 5.10
213 214 2.159435 ACAGTTTCAACCAACAACTCGC 60.159 45.455 0.00 0.00 0.00 5.03
214 215 3.425404 CACAGTTTCAACCAACAACTCG 58.575 45.455 0.00 0.00 0.00 4.18
215 216 3.179048 GCACAGTTTCAACCAACAACTC 58.821 45.455 0.00 0.00 0.00 3.01
216 217 2.415357 CGCACAGTTTCAACCAACAACT 60.415 45.455 0.00 0.00 0.00 3.16
217 218 1.917303 CGCACAGTTTCAACCAACAAC 59.083 47.619 0.00 0.00 0.00 3.32
218 219 1.542030 ACGCACAGTTTCAACCAACAA 59.458 42.857 0.00 0.00 0.00 2.83
219 220 1.135546 CACGCACAGTTTCAACCAACA 60.136 47.619 0.00 0.00 0.00 3.33
220 221 1.544686 CACGCACAGTTTCAACCAAC 58.455 50.000 0.00 0.00 0.00 3.77
221 222 0.179150 GCACGCACAGTTTCAACCAA 60.179 50.000 0.00 0.00 0.00 3.67
222 223 1.029408 AGCACGCACAGTTTCAACCA 61.029 50.000 0.00 0.00 0.00 3.67
223 224 0.100503 AAGCACGCACAGTTTCAACC 59.899 50.000 0.00 0.00 0.00 3.77
224 225 2.031683 ACTAAGCACGCACAGTTTCAAC 59.968 45.455 0.00 0.00 0.00 3.18
225 226 2.285083 ACTAAGCACGCACAGTTTCAA 58.715 42.857 0.00 0.00 0.00 2.69
226 227 1.948104 ACTAAGCACGCACAGTTTCA 58.052 45.000 0.00 0.00 0.00 2.69
227 228 4.663636 ATTACTAAGCACGCACAGTTTC 57.336 40.909 1.55 0.00 0.00 2.78
228 229 6.737254 ATAATTACTAAGCACGCACAGTTT 57.263 33.333 1.55 0.00 0.00 2.66
229 230 9.706691 ATATATAATTACTAAGCACGCACAGTT 57.293 29.630 1.55 0.00 0.00 3.16
230 231 9.355215 GATATATAATTACTAAGCACGCACAGT 57.645 33.333 0.00 0.00 0.00 3.55
231 232 9.574458 AGATATATAATTACTAAGCACGCACAG 57.426 33.333 0.00 0.00 0.00 3.66
232 233 9.353999 CAGATATATAATTACTAAGCACGCACA 57.646 33.333 0.00 0.00 0.00 4.57
233 234 8.321716 GCAGATATATAATTACTAAGCACGCAC 58.678 37.037 0.00 0.00 0.00 5.34
234 235 8.032451 TGCAGATATATAATTACTAAGCACGCA 58.968 33.333 0.00 0.00 0.00 5.24
235 236 8.407457 TGCAGATATATAATTACTAAGCACGC 57.593 34.615 0.00 0.00 0.00 5.34
248 249 9.706529 ACTATCTCCAGACATGCAGATATATAA 57.293 33.333 0.00 0.00 29.49 0.98
250 251 9.130661 GTACTATCTCCAGACATGCAGATATAT 57.869 37.037 0.00 0.00 29.49 0.86
251 252 8.332487 AGTACTATCTCCAGACATGCAGATATA 58.668 37.037 0.00 0.00 29.49 0.86
252 253 7.181361 AGTACTATCTCCAGACATGCAGATAT 58.819 38.462 0.00 0.00 29.49 1.63
253 254 6.547402 AGTACTATCTCCAGACATGCAGATA 58.453 40.000 0.00 0.00 0.00 1.98
254 255 5.392995 AGTACTATCTCCAGACATGCAGAT 58.607 41.667 0.00 0.00 0.00 2.90
255 256 4.797743 AGTACTATCTCCAGACATGCAGA 58.202 43.478 0.00 0.00 0.00 4.26
256 257 5.068329 TGAAGTACTATCTCCAGACATGCAG 59.932 44.000 0.00 0.00 0.00 4.41
257 258 4.956075 TGAAGTACTATCTCCAGACATGCA 59.044 41.667 0.00 0.00 0.00 3.96
258 259 5.521906 TGAAGTACTATCTCCAGACATGC 57.478 43.478 0.00 0.00 0.00 4.06
259 260 9.689976 CTAAATGAAGTACTATCTCCAGACATG 57.310 37.037 0.00 0.00 0.00 3.21
260 261 8.364142 GCTAAATGAAGTACTATCTCCAGACAT 58.636 37.037 0.00 0.00 0.00 3.06
261 262 7.342026 TGCTAAATGAAGTACTATCTCCAGACA 59.658 37.037 0.00 0.00 0.00 3.41
262 263 7.717568 TGCTAAATGAAGTACTATCTCCAGAC 58.282 38.462 0.00 0.00 0.00 3.51
263 264 7.561722 ACTGCTAAATGAAGTACTATCTCCAGA 59.438 37.037 0.00 0.00 31.30 3.86
264 265 7.721402 ACTGCTAAATGAAGTACTATCTCCAG 58.279 38.462 0.00 0.00 31.30 3.86
265 266 7.661536 ACTGCTAAATGAAGTACTATCTCCA 57.338 36.000 0.00 0.00 31.30 3.86
335 336 6.975772 ACGAGCAACAAATTTTACTAGCAAAA 59.024 30.769 3.37 3.37 0.00 2.44
358 361 6.802608 TGTATCAGAAGTAAACCTATCCACG 58.197 40.000 0.00 0.00 0.00 4.94
364 367 5.163237 GGGGCATGTATCAGAAGTAAACCTA 60.163 44.000 0.00 0.00 0.00 3.08
367 370 4.781934 AGGGGCATGTATCAGAAGTAAAC 58.218 43.478 0.00 0.00 0.00 2.01
369 372 6.328934 TCATAAGGGGCATGTATCAGAAGTAA 59.671 38.462 0.00 0.00 0.00 2.24
471 491 4.273969 CACAACCAAATCAGCAGCAAAATT 59.726 37.500 0.00 0.00 0.00 1.82
495 515 4.557496 GCAGAAAGGAGGCTACACTTTTTG 60.557 45.833 17.51 17.51 38.56 2.44
498 518 2.106511 TGCAGAAAGGAGGCTACACTTT 59.893 45.455 0.00 5.25 37.16 2.66
750 811 5.638234 AGACATAAAAGAAGGTTCAGCGTAC 59.362 40.000 0.00 0.00 0.00 3.67
927 991 4.664150 AGAAATAGTAGCTGCAGGACTC 57.336 45.455 17.12 0.00 0.00 3.36
992 1077 0.606130 TTGCAGCGCCATCTTGAGAA 60.606 50.000 2.29 0.00 0.00 2.87
1218 1303 2.242196 TCCATTGACCAAGGAGATTCCC 59.758 50.000 0.00 0.00 37.19 3.97
1239 1324 1.202976 AGCTTCAAAGTGTCATGGGCT 60.203 47.619 0.00 0.00 0.00 5.19
1253 1338 2.033141 GCAGACCAGCCAGCTTCA 59.967 61.111 0.00 0.00 0.00 3.02
1254 1339 1.303155 AAGCAGACCAGCCAGCTTC 60.303 57.895 0.00 0.00 43.24 3.86
1360 1445 0.675083 CCACAGGCAGCACATTTCAA 59.325 50.000 0.00 0.00 0.00 2.69
1446 1531 2.452600 TGTCCTTGCCACCTTTCTTT 57.547 45.000 0.00 0.00 0.00 2.52
1455 1540 2.949177 TAGCTTTCTTGTCCTTGCCA 57.051 45.000 0.00 0.00 0.00 4.92
1632 1720 3.937706 CTCTTGGTGATGAGACATGTTCC 59.062 47.826 0.00 0.00 32.44 3.62
1682 1779 1.775770 CATCGTCGTCGTCATCATCAC 59.224 52.381 1.33 0.00 38.33 3.06
1692 1807 2.101878 CACTGTACATCATCGTCGTCG 58.898 52.381 0.00 0.00 38.55 5.12
1864 1985 1.447945 GAGGTCTCTTCAGCCTTTGC 58.552 55.000 0.00 0.00 31.89 3.68
1909 2030 0.839946 GCATCATAGGGAGTGGTGGT 59.160 55.000 0.00 0.00 0.00 4.16
1910 2031 0.839277 TGCATCATAGGGAGTGGTGG 59.161 55.000 0.00 0.00 0.00 4.61
1911 2032 1.487976 AGTGCATCATAGGGAGTGGTG 59.512 52.381 0.00 0.00 0.00 4.17
1928 2049 2.746362 GCCTTGATCTCTTCAACCAGTG 59.254 50.000 0.00 0.00 39.44 3.66
1990 2111 3.706373 GGGCGAGGAGGACAGCAA 61.706 66.667 0.00 0.00 0.00 3.91
2005 2126 2.697644 ATCCTTCAGGGGCAGGGG 60.698 66.667 0.00 0.00 35.41 4.79
2022 2143 0.178767 CGAAGAGGGCATCCATCACA 59.821 55.000 0.00 0.00 34.83 3.58
2061 2182 2.123683 TTCGCAAACCCCTTGGCA 60.124 55.556 0.00 0.00 35.38 4.92
2063 2184 0.611896 ATCCTTCGCAAACCCCTTGG 60.612 55.000 0.00 0.00 35.38 3.61
2289 2410 2.820728 TCACGATCTGGGAGTCCTTA 57.179 50.000 9.58 0.00 0.00 2.69
2302 2423 1.098050 GGCTTGGCATTCTTCACGAT 58.902 50.000 0.00 0.00 0.00 3.73
2368 2492 0.254178 ATGGGAGCAAGCAGTACAGG 59.746 55.000 0.00 0.00 0.00 4.00
2386 2512 4.216902 GGTGGTAAAAAGTAAGTGCGGAAT 59.783 41.667 0.00 0.00 0.00 3.01
2390 2516 2.663606 GCGGTGGTAAAAAGTAAGTGCG 60.664 50.000 0.00 0.00 0.00 5.34
2397 2523 2.551032 GCAAGTAGCGGTGGTAAAAAGT 59.449 45.455 0.00 0.00 0.00 2.66
2452 2578 2.357327 AAACGATCCACGACGATGAA 57.643 45.000 0.00 0.00 45.77 2.57
2471 2597 5.253330 ACTCAACTGACTCAAACTCCAAAA 58.747 37.500 0.00 0.00 0.00 2.44
2495 2621 3.249799 TCACACGGTGCTTTGAAATACAG 59.750 43.478 8.30 0.00 32.98 2.74
2520 2656 3.064820 ACGAGTCTTCAACGCAAATTGTT 59.935 39.130 0.00 0.00 0.00 2.83
2525 2661 7.703197 TCATATATAACGAGTCTTCAACGCAAA 59.297 33.333 0.00 0.00 0.00 3.68
2540 2676 8.551205 ACAAATGACAGCAGTTCATATATAACG 58.449 33.333 0.00 0.00 28.37 3.18
2553 2689 6.974932 ATAACAGACTACAAATGACAGCAG 57.025 37.500 0.00 0.00 0.00 4.24
2560 2696 8.446273 GGCAGCATATATAACAGACTACAAATG 58.554 37.037 0.00 0.00 0.00 2.32
2561 2697 8.378565 AGGCAGCATATATAACAGACTACAAAT 58.621 33.333 0.00 0.00 0.00 2.32
2565 2701 6.591834 CCAAGGCAGCATATATAACAGACTAC 59.408 42.308 0.00 0.00 0.00 2.73
2567 2703 5.513788 CCCAAGGCAGCATATATAACAGACT 60.514 44.000 0.00 0.00 0.00 3.24
2572 2708 4.636206 GCTACCCAAGGCAGCATATATAAC 59.364 45.833 0.81 0.00 35.35 1.89
2591 2727 2.069273 ACAATCAAGTGACAGCGCTAC 58.931 47.619 10.99 4.81 33.70 3.58
2613 2759 5.212194 CAATGACGGACACCAACTTTAAAG 58.788 41.667 13.76 13.76 0.00 1.85
2617 2763 2.616842 GACAATGACGGACACCAACTTT 59.383 45.455 0.00 0.00 0.00 2.66
2647 2801 9.881529 TTACAAACATTAGTCCGTTTCAAATAC 57.118 29.630 0.00 0.00 33.14 1.89
2687 2841 9.681062 CAAGGATAGGAACTTTAAAGGTCATTA 57.319 33.333 29.51 21.74 44.60 1.90
2688 2842 8.390921 TCAAGGATAGGAACTTTAAAGGTCATT 58.609 33.333 29.51 20.53 44.60 2.57
2690 2844 7.166167 GTCAAGGATAGGAACTTTAAAGGTCA 58.834 38.462 29.51 14.38 44.60 4.02
2691 2845 6.313164 CGTCAAGGATAGGAACTTTAAAGGTC 59.687 42.308 22.69 22.69 42.06 3.85
2692 2846 6.171213 CGTCAAGGATAGGAACTTTAAAGGT 58.829 40.000 19.14 13.23 41.75 3.50
2693 2847 5.585047 CCGTCAAGGATAGGAACTTTAAAGG 59.415 44.000 19.14 2.04 45.00 3.11
2694 2848 6.171213 ACCGTCAAGGATAGGAACTTTAAAG 58.829 40.000 13.76 13.76 45.00 1.85
2697 2851 8.716674 ATATACCGTCAAGGATAGGAACTTTA 57.283 34.615 0.00 0.00 45.00 1.85
2698 2852 5.952347 ATACCGTCAAGGATAGGAACTTT 57.048 39.130 0.00 0.00 45.00 2.66
2699 2853 8.583296 GTTATATACCGTCAAGGATAGGAACTT 58.417 37.037 0.00 0.00 45.00 2.66
2701 2855 8.027771 CAGTTATATACCGTCAAGGATAGGAAC 58.972 40.741 0.00 0.00 45.00 3.62
2703 2857 6.152323 GCAGTTATATACCGTCAAGGATAGGA 59.848 42.308 0.00 0.00 45.00 2.94
2707 2861 4.838986 AGGCAGTTATATACCGTCAAGGAT 59.161 41.667 0.00 0.00 45.00 3.24
2709 2863 7.697747 AGGTAGGCAGTTATATACCGTCAAGG 61.698 46.154 0.00 0.00 42.09 3.61
2710 2864 5.243283 AGGTAGGCAGTTATATACCGTCAAG 59.757 44.000 0.00 0.00 42.09 3.02
2713 2867 5.618640 CGAAGGTAGGCAGTTATATACCGTC 60.619 48.000 6.22 6.22 42.09 4.79
2734 3056 1.679680 CTTATCGCCAGAGTACCCGAA 59.320 52.381 0.00 0.00 33.10 4.30
2736 3058 0.314302 CCTTATCGCCAGAGTACCCG 59.686 60.000 0.00 0.00 0.00 5.28
2737 3059 1.700955 TCCTTATCGCCAGAGTACCC 58.299 55.000 0.00 0.00 0.00 3.69
2738 3060 2.891580 TCATCCTTATCGCCAGAGTACC 59.108 50.000 0.00 0.00 0.00 3.34
2741 3063 1.338337 CGTCATCCTTATCGCCAGAGT 59.662 52.381 0.00 0.00 0.00 3.24
2742 3064 1.336332 CCGTCATCCTTATCGCCAGAG 60.336 57.143 0.00 0.00 0.00 3.35
2743 3065 0.673985 CCGTCATCCTTATCGCCAGA 59.326 55.000 0.00 0.00 0.00 3.86
2744 3066 0.946221 GCCGTCATCCTTATCGCCAG 60.946 60.000 0.00 0.00 0.00 4.85
2745 3067 1.069090 GCCGTCATCCTTATCGCCA 59.931 57.895 0.00 0.00 0.00 5.69
2746 3068 0.946221 CTGCCGTCATCCTTATCGCC 60.946 60.000 0.00 0.00 0.00 5.54
2747 3069 0.032130 TCTGCCGTCATCCTTATCGC 59.968 55.000 0.00 0.00 0.00 4.58
2748 3070 1.336332 CCTCTGCCGTCATCCTTATCG 60.336 57.143 0.00 0.00 0.00 2.92
2749 3071 1.964223 TCCTCTGCCGTCATCCTTATC 59.036 52.381 0.00 0.00 0.00 1.75
2750 3072 1.967066 CTCCTCTGCCGTCATCCTTAT 59.033 52.381 0.00 0.00 0.00 1.73
2751 3073 1.063942 TCTCCTCTGCCGTCATCCTTA 60.064 52.381 0.00 0.00 0.00 2.69
2752 3074 0.324738 TCTCCTCTGCCGTCATCCTT 60.325 55.000 0.00 0.00 0.00 3.36
2753 3075 1.040339 GTCTCCTCTGCCGTCATCCT 61.040 60.000 0.00 0.00 0.00 3.24
2754 3076 1.439644 GTCTCCTCTGCCGTCATCC 59.560 63.158 0.00 0.00 0.00 3.51
2755 3077 1.064946 CGTCTCCTCTGCCGTCATC 59.935 63.158 0.00 0.00 0.00 2.92
2756 3078 2.418910 CCGTCTCCTCTGCCGTCAT 61.419 63.158 0.00 0.00 0.00 3.06
2757 3079 3.062466 CCGTCTCCTCTGCCGTCA 61.062 66.667 0.00 0.00 0.00 4.35
2758 3080 3.053849 GACCGTCTCCTCTGCCGTC 62.054 68.421 0.00 0.00 0.00 4.79
2759 3081 3.063084 GACCGTCTCCTCTGCCGT 61.063 66.667 0.00 0.00 0.00 5.68
2760 3082 4.180946 CGACCGTCTCCTCTGCCG 62.181 72.222 0.00 0.00 0.00 5.69
2761 3083 3.827898 CCGACCGTCTCCTCTGCC 61.828 72.222 0.00 0.00 0.00 4.85
2762 3084 3.053849 GACCGACCGTCTCCTCTGC 62.054 68.421 0.00 0.00 38.57 4.26
2763 3085 1.649390 CTGACCGACCGTCTCCTCTG 61.649 65.000 0.00 0.00 42.49 3.35
2764 3086 1.377463 CTGACCGACCGTCTCCTCT 60.377 63.158 0.00 0.00 42.49 3.69
2765 3087 3.053849 GCTGACCGACCGTCTCCTC 62.054 68.421 0.00 0.00 42.49 3.71
2766 3088 3.063084 GCTGACCGACCGTCTCCT 61.063 66.667 0.00 0.00 42.49 3.69
2767 3089 4.131088 GGCTGACCGACCGTCTCC 62.131 72.222 0.00 0.00 42.49 3.71
2777 3099 2.479820 AAACCTAAGGCCGGCTGACC 62.480 60.000 28.56 9.72 0.00 4.02
2778 3100 0.251073 TAAACCTAAGGCCGGCTGAC 59.749 55.000 28.56 10.16 0.00 3.51
2779 3101 0.985760 TTAAACCTAAGGCCGGCTGA 59.014 50.000 28.56 10.94 0.00 4.26
2780 3102 1.092348 GTTAAACCTAAGGCCGGCTG 58.908 55.000 28.56 13.87 0.00 4.85
2781 3103 0.034767 GGTTAAACCTAAGGCCGGCT 60.035 55.000 28.56 10.45 34.73 5.52
2782 3104 1.033746 GGGTTAAACCTAAGGCCGGC 61.034 60.000 21.18 21.18 38.64 6.13
2783 3105 0.622136 AGGGTTAAACCTAAGGCCGG 59.378 55.000 11.38 0.00 39.65 6.13
2784 3106 2.089201 CAAGGGTTAAACCTAAGGCCG 58.911 52.381 13.82 0.00 40.87 6.13
2785 3107 3.444792 TCAAGGGTTAAACCTAAGGCC 57.555 47.619 13.82 0.00 40.87 5.19
2786 3108 5.130292 GTTTCAAGGGTTAAACCTAAGGC 57.870 43.478 13.82 0.00 40.87 4.35
2793 3115 6.537355 AGTACCTAGGTTTCAAGGGTTAAAC 58.463 40.000 22.11 7.13 37.18 2.01
2794 3116 6.768641 AGTACCTAGGTTTCAAGGGTTAAA 57.231 37.500 22.11 0.00 37.18 1.52
2795 3117 7.513781 AGTTAGTACCTAGGTTTCAAGGGTTAA 59.486 37.037 22.11 5.08 37.18 2.01
2796 3118 7.018769 AGTTAGTACCTAGGTTTCAAGGGTTA 58.981 38.462 22.11 0.00 37.18 2.85
2797 3119 5.848369 AGTTAGTACCTAGGTTTCAAGGGTT 59.152 40.000 22.11 0.06 37.18 4.11
2798 3120 5.409712 AGTTAGTACCTAGGTTTCAAGGGT 58.590 41.667 22.11 0.00 37.18 4.34
2799 3121 5.393896 CGAGTTAGTACCTAGGTTTCAAGGG 60.394 48.000 22.11 0.16 37.18 3.95
2800 3122 5.184671 ACGAGTTAGTACCTAGGTTTCAAGG 59.815 44.000 22.11 5.91 38.93 3.61
2801 3123 6.264841 ACGAGTTAGTACCTAGGTTTCAAG 57.735 41.667 22.11 7.18 0.00 3.02
2802 3124 7.759489 TTACGAGTTAGTACCTAGGTTTCAA 57.241 36.000 22.11 8.64 0.00 2.69
2803 3125 7.230510 TGTTTACGAGTTAGTACCTAGGTTTCA 59.769 37.037 22.11 0.00 0.00 2.69
2804 3126 7.593825 TGTTTACGAGTTAGTACCTAGGTTTC 58.406 38.462 22.11 13.81 0.00 2.78
2805 3127 7.524717 TGTTTACGAGTTAGTACCTAGGTTT 57.475 36.000 22.11 11.71 0.00 3.27
2806 3128 7.524717 TTGTTTACGAGTTAGTACCTAGGTT 57.475 36.000 22.11 5.38 0.00 3.50
2807 3129 7.524717 TTTGTTTACGAGTTAGTACCTAGGT 57.475 36.000 20.57 20.57 0.00 3.08
2815 3137 9.962759 CGCTTTTATATTTGTTTACGAGTTAGT 57.037 29.630 0.00 0.00 0.00 2.24
2816 3138 9.962759 ACGCTTTTATATTTGTTTACGAGTTAG 57.037 29.630 0.00 0.00 0.00 2.34
2818 3140 9.667989 AAACGCTTTTATATTTGTTTACGAGTT 57.332 25.926 0.00 0.00 0.00 3.01
2834 3156 9.918630 ACTAAAGTAGTGATCTAAACGCTTTTA 57.081 29.630 10.23 0.00 37.69 1.52
2835 3157 8.828688 ACTAAAGTAGTGATCTAAACGCTTTT 57.171 30.769 10.23 0.00 37.69 2.27
2836 3158 9.918630 TTACTAAAGTAGTGATCTAAACGCTTT 57.081 29.630 0.00 3.97 39.81 3.51
2838 3160 9.733219 GATTACTAAAGTAGTGATCTAAACGCT 57.267 33.333 11.11 0.00 44.10 5.07
2869 3191 9.832445 CTCCCTCTGTAAACTAATATAAAAGCA 57.168 33.333 0.00 0.00 0.00 3.91
2870 3192 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
2883 3205 9.359653 GGTACAGTATAATACTCCCTCTGTAAA 57.640 37.037 0.00 0.00 38.20 2.01
2884 3206 7.663081 CGGTACAGTATAATACTCCCTCTGTAA 59.337 40.741 0.00 0.00 38.20 2.41
2885 3207 7.164122 CGGTACAGTATAATACTCCCTCTGTA 58.836 42.308 0.00 0.00 36.76 2.74
2886 3208 6.002704 CGGTACAGTATAATACTCCCTCTGT 58.997 44.000 0.00 0.00 36.76 3.41
2887 3209 5.106237 GCGGTACAGTATAATACTCCCTCTG 60.106 48.000 0.00 0.00 36.76 3.35
2888 3210 5.008980 GCGGTACAGTATAATACTCCCTCT 58.991 45.833 0.00 0.00 36.76 3.69
2889 3211 4.157472 GGCGGTACAGTATAATACTCCCTC 59.843 50.000 0.00 0.00 36.76 4.30
2890 3212 4.085009 GGCGGTACAGTATAATACTCCCT 58.915 47.826 0.00 0.00 36.76 4.20
2891 3213 3.119708 CGGCGGTACAGTATAATACTCCC 60.120 52.174 0.00 0.00 36.76 4.30
2892 3214 3.503748 ACGGCGGTACAGTATAATACTCC 59.496 47.826 13.24 0.00 36.76 3.85
2893 3215 4.756084 ACGGCGGTACAGTATAATACTC 57.244 45.455 13.24 0.00 36.76 2.59
2894 3216 5.530915 TGTTACGGCGGTACAGTATAATACT 59.469 40.000 13.24 0.00 40.28 2.12
2895 3217 5.757886 TGTTACGGCGGTACAGTATAATAC 58.242 41.667 13.24 0.00 0.00 1.89
2896 3218 6.384258 TTGTTACGGCGGTACAGTATAATA 57.616 37.500 13.24 0.00 0.00 0.98
2897 3219 4.916983 TGTTACGGCGGTACAGTATAAT 57.083 40.909 13.24 0.00 0.00 1.28
2898 3220 4.710423 TTGTTACGGCGGTACAGTATAA 57.290 40.909 13.24 0.00 0.00 0.98
2899 3221 4.710423 TTTGTTACGGCGGTACAGTATA 57.290 40.909 13.24 0.00 0.00 1.47
2900 3222 3.591196 TTTGTTACGGCGGTACAGTAT 57.409 42.857 13.24 0.00 0.00 2.12
2901 3223 3.377346 TTTTGTTACGGCGGTACAGTA 57.623 42.857 13.24 4.37 0.00 2.74
2902 3224 2.237393 TTTTGTTACGGCGGTACAGT 57.763 45.000 13.24 0.00 0.00 3.55
2903 3225 5.292589 AGAATATTTTGTTACGGCGGTACAG 59.707 40.000 13.24 0.00 0.00 2.74
2904 3226 5.177326 AGAATATTTTGTTACGGCGGTACA 58.823 37.500 13.24 12.18 0.00 2.90
2905 3227 5.555069 CGAGAATATTTTGTTACGGCGGTAC 60.555 44.000 13.24 9.38 0.00 3.34
2906 3228 4.503734 CGAGAATATTTTGTTACGGCGGTA 59.496 41.667 13.24 0.00 0.00 4.02
2907 3229 3.307782 CGAGAATATTTTGTTACGGCGGT 59.692 43.478 13.24 1.39 0.00 5.68
2908 3230 3.302870 CCGAGAATATTTTGTTACGGCGG 60.303 47.826 13.24 0.00 33.24 6.13
2909 3231 3.307782 ACCGAGAATATTTTGTTACGGCG 59.692 43.478 4.80 4.80 42.29 6.46
2910 3232 4.495184 CCACCGAGAATATTTTGTTACGGC 60.495 45.833 0.00 0.00 42.29 5.68
2911 3233 4.632688 ACCACCGAGAATATTTTGTTACGG 59.367 41.667 0.00 0.00 43.79 4.02
2912 3234 5.789710 ACCACCGAGAATATTTTGTTACG 57.210 39.130 0.00 0.00 0.00 3.18
2913 3235 7.677982 GCCTTACCACCGAGAATATTTTGTTAC 60.678 40.741 0.00 0.00 0.00 2.50
2914 3236 6.316890 GCCTTACCACCGAGAATATTTTGTTA 59.683 38.462 0.00 0.00 0.00 2.41
2915 3237 5.124936 GCCTTACCACCGAGAATATTTTGTT 59.875 40.000 0.00 0.00 0.00 2.83
2916 3238 4.638865 GCCTTACCACCGAGAATATTTTGT 59.361 41.667 0.00 0.00 0.00 2.83
2917 3239 4.638421 TGCCTTACCACCGAGAATATTTTG 59.362 41.667 0.00 0.00 0.00 2.44
2918 3240 4.850680 TGCCTTACCACCGAGAATATTTT 58.149 39.130 0.00 0.00 0.00 1.82
2919 3241 4.497291 TGCCTTACCACCGAGAATATTT 57.503 40.909 0.00 0.00 0.00 1.40
2920 3242 4.141482 ACATGCCTTACCACCGAGAATATT 60.141 41.667 0.00 0.00 0.00 1.28
2921 3243 3.391296 ACATGCCTTACCACCGAGAATAT 59.609 43.478 0.00 0.00 0.00 1.28
2922 3244 2.769663 ACATGCCTTACCACCGAGAATA 59.230 45.455 0.00 0.00 0.00 1.75
2923 3245 1.559682 ACATGCCTTACCACCGAGAAT 59.440 47.619 0.00 0.00 0.00 2.40
2924 3246 0.981183 ACATGCCTTACCACCGAGAA 59.019 50.000 0.00 0.00 0.00 2.87
2925 3247 1.855295 TACATGCCTTACCACCGAGA 58.145 50.000 0.00 0.00 0.00 4.04
2926 3248 2.093658 AGTTACATGCCTTACCACCGAG 60.094 50.000 0.00 0.00 0.00 4.63
2927 3249 1.903860 AGTTACATGCCTTACCACCGA 59.096 47.619 0.00 0.00 0.00 4.69
2928 3250 2.093658 AGAGTTACATGCCTTACCACCG 60.094 50.000 0.00 0.00 0.00 4.94
2929 3251 3.629142 AGAGTTACATGCCTTACCACC 57.371 47.619 0.00 0.00 0.00 4.61
2930 3252 5.340439 AGTAGAGTTACATGCCTTACCAC 57.660 43.478 0.00 0.00 31.96 4.16
2931 3253 5.482526 TCAAGTAGAGTTACATGCCTTACCA 59.517 40.000 0.00 0.00 30.54 3.25
2932 3254 5.974108 TCAAGTAGAGTTACATGCCTTACC 58.026 41.667 0.00 0.00 30.54 2.85
2933 3255 7.064728 CCTTTCAAGTAGAGTTACATGCCTTAC 59.935 40.741 0.00 0.00 30.54 2.34
2934 3256 7.103641 CCTTTCAAGTAGAGTTACATGCCTTA 58.896 38.462 0.00 0.00 30.54 2.69
2935 3257 5.940470 CCTTTCAAGTAGAGTTACATGCCTT 59.060 40.000 0.00 0.00 30.54 4.35
2936 3258 5.013183 ACCTTTCAAGTAGAGTTACATGCCT 59.987 40.000 0.00 0.00 30.54 4.75
2939 3261 5.875359 GGGACCTTTCAAGTAGAGTTACATG 59.125 44.000 0.00 0.00 31.44 3.21
2942 3264 5.480205 CAGGGACCTTTCAAGTAGAGTTAC 58.520 45.833 0.00 0.00 0.00 2.50
2943 3265 4.530946 CCAGGGACCTTTCAAGTAGAGTTA 59.469 45.833 0.00 0.00 0.00 2.24
2947 3269 1.628846 GCCAGGGACCTTTCAAGTAGA 59.371 52.381 0.00 0.00 0.00 2.59
2952 3274 1.065709 GTATCGCCAGGGACCTTTCAA 60.066 52.381 0.00 0.00 0.00 2.69
2953 3275 0.539986 GTATCGCCAGGGACCTTTCA 59.460 55.000 0.00 0.00 0.00 2.69
2954 3276 0.529992 CGTATCGCCAGGGACCTTTC 60.530 60.000 0.00 0.00 0.00 2.62
2962 3284 2.094854 GGTAGATTACCGTATCGCCAGG 60.095 54.545 0.00 0.00 39.39 4.45
2963 3285 3.213249 GGTAGATTACCGTATCGCCAG 57.787 52.381 0.00 0.00 39.39 4.85
2981 3303 9.945633 AGAAAGAGAACTCTAGAATTATAGGGT 57.054 33.333 6.81 6.81 38.14 4.34
3067 3449 7.994194 TGCTATTTATTTGTGTGTGATGCATA 58.006 30.769 0.00 0.00 0.00 3.14
3077 3459 8.220755 ACGTTGGATATGCTATTTATTTGTGT 57.779 30.769 0.00 0.00 0.00 3.72
3080 3462 8.503196 TGCTACGTTGGATATGCTATTTATTTG 58.497 33.333 0.00 0.00 0.00 2.32
3082 3464 8.615878 TTGCTACGTTGGATATGCTATTTATT 57.384 30.769 0.00 0.00 0.00 1.40
3086 3468 7.878127 ACTATTTGCTACGTTGGATATGCTATT 59.122 33.333 0.00 0.00 0.00 1.73
3088 3470 6.755206 ACTATTTGCTACGTTGGATATGCTA 58.245 36.000 0.00 0.00 0.00 3.49
3089 3471 5.611374 ACTATTTGCTACGTTGGATATGCT 58.389 37.500 0.00 0.00 0.00 3.79
3090 3472 5.924475 ACTATTTGCTACGTTGGATATGC 57.076 39.130 0.00 0.00 0.00 3.14
3097 3499 6.682863 GCTATGTTGAACTATTTGCTACGTTG 59.317 38.462 0.00 0.00 0.00 4.10
3101 3503 6.677781 TGGCTATGTTGAACTATTTGCTAC 57.322 37.500 0.00 0.00 0.00 3.58
3142 3570 2.029073 ACGTCGACCTTGGTGCTG 59.971 61.111 10.58 0.00 0.00 4.41
3152 3580 2.353889 TCTAGTATTCAGGCACGTCGAC 59.646 50.000 5.18 5.18 0.00 4.20
3155 3583 3.491104 CCCTTCTAGTATTCAGGCACGTC 60.491 52.174 0.00 0.00 0.00 4.34
3157 3585 2.693591 TCCCTTCTAGTATTCAGGCACG 59.306 50.000 0.00 0.00 0.00 5.34
3158 3586 4.162509 ACTTCCCTTCTAGTATTCAGGCAC 59.837 45.833 0.00 0.00 0.00 5.01
3162 3590 8.192110 GTCACTTACTTCCCTTCTAGTATTCAG 58.808 40.741 0.00 0.00 0.00 3.02
3163 3591 7.123847 GGTCACTTACTTCCCTTCTAGTATTCA 59.876 40.741 0.00 0.00 0.00 2.57
3194 3622 1.198713 GAGCCAGATGAGGGAAGTGA 58.801 55.000 0.00 0.00 0.00 3.41
3201 3629 1.741732 CGGAAGTTGAGCCAGATGAGG 60.742 57.143 0.00 0.00 0.00 3.86
3209 3637 0.799393 GAAGAAGCGGAAGTTGAGCC 59.201 55.000 0.00 0.00 0.00 4.70
3217 3645 2.093447 GGAAGATGAGGAAGAAGCGGAA 60.093 50.000 0.00 0.00 0.00 4.30
3219 3647 1.474143 GGGAAGATGAGGAAGAAGCGG 60.474 57.143 0.00 0.00 0.00 5.52
3237 3665 0.392998 CCATGTTGAGAAGTCCGGGG 60.393 60.000 0.00 0.00 0.00 5.73
3240 3668 0.389817 TCGCCATGTTGAGAAGTCCG 60.390 55.000 0.00 0.00 0.00 4.79
3243 3671 1.344438 TGTCTCGCCATGTTGAGAAGT 59.656 47.619 13.83 0.00 42.49 3.01
3246 3674 1.069978 TGTTGTCTCGCCATGTTGAGA 59.930 47.619 9.41 9.41 38.85 3.27
3258 3686 0.524862 CCATGCTGCCTTGTTGTCTC 59.475 55.000 0.00 0.00 0.00 3.36
3261 3689 0.251297 TAGCCATGCTGCCTTGTTGT 60.251 50.000 0.00 0.00 40.10 3.32
3266 3694 1.750399 CCGTTAGCCATGCTGCCTT 60.750 57.895 0.00 0.00 40.10 4.35
3271 3699 0.392998 CAGGTTCCGTTAGCCATGCT 60.393 55.000 0.00 0.00 43.41 3.79
3296 3724 2.825836 CACTTCCCCGAGCCATGC 60.826 66.667 0.00 0.00 0.00 4.06
3326 3754 2.961526 AGCCCGTCAATACACACTAG 57.038 50.000 0.00 0.00 0.00 2.57
3330 3758 1.754803 CTCCTAGCCCGTCAATACACA 59.245 52.381 0.00 0.00 0.00 3.72
3331 3759 1.538419 GCTCCTAGCCCGTCAATACAC 60.538 57.143 0.00 0.00 34.48 2.90
3335 3763 1.344763 GTATGCTCCTAGCCCGTCAAT 59.655 52.381 0.00 0.00 41.51 2.57
3341 3769 1.694150 TGATGTGTATGCTCCTAGCCC 59.306 52.381 0.00 0.00 41.51 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.