Multiple sequence alignment - TraesCS6B01G145100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G145100 chr6B 100.000 3541 0 0 3391 6931 144963910 144967450 0.000000e+00 6540.0
1 TraesCS6B01G145100 chr6B 100.000 3115 0 0 1 3115 144960520 144963634 0.000000e+00 5753.0
2 TraesCS6B01G145100 chr6B 87.827 1339 105 29 3679 4988 137383681 137384990 0.000000e+00 1517.0
3 TraesCS6B01G145100 chr6B 81.190 1866 227 48 3476 5270 122296460 122294648 0.000000e+00 1387.0
4 TraesCS6B01G145100 chr6B 82.079 1222 142 52 1863 3065 122297741 122296578 0.000000e+00 972.0
5 TraesCS6B01G145100 chr6B 88.785 642 69 3 1227 1866 122298659 122298019 0.000000e+00 784.0
6 TraesCS6B01G145100 chr6B 93.226 310 19 2 6293 6602 151597143 151596836 8.200000e-124 455.0
7 TraesCS6B01G145100 chr6B 94.483 290 16 0 6293 6582 262047607 262047896 1.370000e-121 448.0
8 TraesCS6B01G145100 chr6B 81.586 353 41 12 5783 6130 137385385 137385718 3.190000e-68 270.0
9 TraesCS6B01G145100 chr6B 85.714 147 20 1 5501 5646 137385066 137385212 3.350000e-33 154.0
10 TraesCS6B01G145100 chr6B 92.453 53 4 0 2953 3005 122296606 122296554 7.450000e-10 76.8
11 TraesCS6B01G145100 chr6D 97.444 2700 56 4 417 3107 69942717 69945412 0.000000e+00 4591.0
12 TraesCS6B01G145100 chr6D 95.775 2296 62 11 3391 5653 69945721 69948014 0.000000e+00 3670.0
13 TraesCS6B01G145100 chr6D 82.143 1876 216 48 3476 5270 48856869 48858706 0.000000e+00 1498.0
14 TraesCS6B01G145100 chr6D 82.871 1226 140 45 1863 3065 48855573 48856751 0.000000e+00 1037.0
15 TraesCS6B01G145100 chr6D 87.302 882 97 13 996 1865 48854435 48855313 0.000000e+00 994.0
16 TraesCS6B01G145100 chr6D 92.562 484 31 3 5783 6264 69948012 69948492 0.000000e+00 689.0
17 TraesCS6B01G145100 chr6D 83.875 738 92 19 4570 5288 63730172 63730901 0.000000e+00 678.0
18 TraesCS6B01G145100 chr6D 95.529 425 6 4 1 422 69941963 69942377 0.000000e+00 667.0
19 TraesCS6B01G145100 chr6D 88.172 558 50 13 3679 4225 63729178 63729730 0.000000e+00 651.0
20 TraesCS6B01G145100 chr6D 88.825 349 22 9 4224 4571 63729794 63730126 5.000000e-111 412.0
21 TraesCS6B01G145100 chr6D 85.714 77 11 0 2953 3029 69945334 69945410 1.600000e-11 82.4
22 TraesCS6B01G145100 chr6D 90.566 53 5 0 2953 3005 48856723 48856775 3.470000e-08 71.3
23 TraesCS6B01G145100 chr6A 95.081 2704 70 10 417 3101 87756125 87758784 0.000000e+00 4198.0
24 TraesCS6B01G145100 chr6A 94.649 2280 74 17 3417 5653 87759203 87761477 0.000000e+00 3491.0
25 TraesCS6B01G145100 chr6A 82.145 1865 220 48 3476 5270 65803828 65802007 0.000000e+00 1495.0
26 TraesCS6B01G145100 chr6A 82.708 1226 140 46 1863 3065 65805122 65803946 0.000000e+00 1024.0
27 TraesCS6B01G145100 chr6A 88.958 643 65 6 1227 1865 65806023 65805383 0.000000e+00 789.0
28 TraesCS6B01G145100 chr6A 97.412 425 8 2 1 422 87755361 87755785 0.000000e+00 721.0
29 TraesCS6B01G145100 chr6A 91.777 377 27 4 5915 6290 87761546 87761919 7.970000e-144 521.0
30 TraesCS6B01G145100 chr6A 84.896 384 45 9 4914 5286 80879761 80880142 6.560000e-100 375.0
31 TraesCS6B01G145100 chr6A 83.520 358 41 10 2477 2823 22034991 22034641 1.120000e-82 318.0
32 TraesCS6B01G145100 chr6A 83.520 358 41 11 2477 2823 77508399 77508749 1.120000e-82 318.0
33 TraesCS6B01G145100 chr6A 86.713 286 32 4 6603 6888 87761914 87762193 5.220000e-81 313.0
34 TraesCS6B01G145100 chr6A 84.701 268 31 8 5783 6045 80880327 80880589 6.900000e-65 259.0
35 TraesCS6B01G145100 chr6A 84.585 253 27 6 3697 3942 80879067 80879314 2.500000e-59 241.0
36 TraesCS6B01G145100 chr6A 85.000 240 20 6 1637 1875 22035787 22035563 5.410000e-56 230.0
37 TraesCS6B01G145100 chr6A 84.848 231 19 6 1637 1866 77507344 77507559 1.170000e-52 219.0
38 TraesCS6B01G145100 chr6A 81.383 188 29 4 5287 5470 16232636 16232451 1.560000e-31 148.0
39 TraesCS6B01G145100 chr6A 98.750 80 0 1 5783 5861 87761475 87761554 2.610000e-29 141.0
40 TraesCS6B01G145100 chr5B 93.231 325 21 1 6289 6613 640134862 640135185 1.750000e-130 477.0
41 TraesCS6B01G145100 chr5B 92.698 315 19 1 6292 6602 656801620 656801934 1.060000e-122 451.0
42 TraesCS6B01G145100 chr5B 81.818 275 48 1 6659 6931 599989329 599989603 5.410000e-56 230.0
43 TraesCS6B01G145100 chr5B 81.818 275 48 1 6659 6931 600032218 600032492 5.410000e-56 230.0
44 TraesCS6B01G145100 chr5B 81.028 253 40 8 6683 6931 572596702 572596950 1.970000e-45 195.0
45 TraesCS6B01G145100 chr3A 94.231 312 18 0 6292 6603 404715680 404715369 1.750000e-130 477.0
46 TraesCS6B01G145100 chr3A 86.364 374 38 8 3391 3759 723439588 723439223 5.040000e-106 396.0
47 TraesCS6B01G145100 chr3A 83.616 354 41 10 2480 2823 20205112 20205458 4.030000e-82 316.0
48 TraesCS6B01G145100 chr3A 84.848 231 19 6 1637 1866 20204312 20204527 1.170000e-52 219.0
49 TraesCS6B01G145100 chr3A 78.125 224 42 5 5288 5506 51968801 51968580 1.210000e-27 135.0
50 TraesCS6B01G145100 chr2D 87.529 425 33 13 3391 3800 543110067 543110486 2.260000e-129 473.0
51 TraesCS6B01G145100 chr2D 78.378 222 41 5 5288 5504 200366954 200366735 3.370000e-28 137.0
52 TraesCS6B01G145100 chr2D 80.870 115 17 3 738 847 561838332 561838446 1.240000e-12 86.1
53 TraesCS6B01G145100 chr3B 93.269 312 20 1 6293 6604 745475297 745475607 6.340000e-125 459.0
54 TraesCS6B01G145100 chr3B 92.089 316 20 1 6293 6603 443765836 443766151 2.290000e-119 440.0
55 TraesCS6B01G145100 chr3B 85.227 176 18 7 75 242 54605001 54604826 2.570000e-39 174.0
56 TraesCS6B01G145100 chr3B 81.868 182 17 8 250 416 821077630 821077450 9.370000e-29 139.0
57 TraesCS6B01G145100 chr3B 94.828 58 1 1 361 416 787973468 787973411 9.580000e-14 89.8
58 TraesCS6B01G145100 chr7B 92.628 312 21 2 6292 6603 367591963 367591654 1.370000e-121 448.0
59 TraesCS6B01G145100 chr5A 92.926 311 17 1 6293 6603 126953939 126953634 1.370000e-121 448.0
60 TraesCS6B01G145100 chr5A 81.675 382 51 12 42 409 552549826 552549450 4.060000e-77 300.0
61 TraesCS6B01G145100 chr5A 83.402 241 22 4 1637 1875 456472692 456472468 2.530000e-49 207.0
62 TraesCS6B01G145100 chr5A 83.951 81 12 1 734 814 6151896 6151975 7.450000e-10 76.8
63 TraesCS6B01G145100 chr1A 88.056 360 32 6 3541 3889 513428541 513428182 3.870000e-112 416.0
64 TraesCS6B01G145100 chr1A 80.851 423 45 21 1449 1866 513429364 513428973 4.060000e-77 300.0
65 TraesCS6B01G145100 chr1A 78.509 228 40 7 5282 5503 168282754 168282530 2.610000e-29 141.0
66 TraesCS6B01G145100 chr5D 87.097 372 39 5 3391 3759 23824568 23824933 5.000000e-111 412.0
67 TraesCS6B01G145100 chr5D 82.326 430 52 16 1 413 437355509 437355087 1.110000e-92 351.0
68 TraesCS6B01G145100 chr5D 83.224 304 36 7 114 404 437354943 437354642 1.480000e-66 265.0
69 TraesCS6B01G145100 chr5D 84.878 205 20 7 5303 5503 232411942 232411745 5.480000e-46 196.0
70 TraesCS6B01G145100 chr3D 85.515 359 38 10 3541 3889 455714050 455713696 5.110000e-96 363.0
71 TraesCS6B01G145100 chr4D 85.088 342 49 2 519 859 461578793 461578453 1.430000e-91 348.0
72 TraesCS6B01G145100 chr4D 77.273 110 20 3 6187 6292 32224676 32224784 7.510000e-05 60.2
73 TraesCS6B01G145100 chr4A 84.226 336 49 3 525 859 7143792 7144124 2.410000e-84 324.0
74 TraesCS6B01G145100 chr4B 82.789 337 53 4 525 859 577055250 577054917 5.260000e-76 296.0
75 TraesCS6B01G145100 chr4B 78.761 226 42 4 5286 5507 634730535 634730312 5.600000e-31 147.0
76 TraesCS6B01G145100 chrUn 81.818 275 48 1 6659 6931 452675235 452674961 5.410000e-56 230.0
77 TraesCS6B01G145100 chr1D 80.000 220 38 4 5288 5503 182614472 182614689 2.590000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G145100 chr6B 144960520 144967450 6930 False 6146.500000 6540 100.000000 1 6931 2 chr6B.!!$F3 6930
1 TraesCS6B01G145100 chr6B 122294648 122298659 4011 True 804.950000 1387 86.126750 1227 5270 4 chr6B.!!$R2 4043
2 TraesCS6B01G145100 chr6B 137383681 137385718 2037 False 647.000000 1517 85.042333 3679 6130 3 chr6B.!!$F2 2451
3 TraesCS6B01G145100 chr6D 69941963 69948492 6529 False 1939.880000 4591 93.404800 1 6264 5 chr6D.!!$F3 6263
4 TraesCS6B01G145100 chr6D 48854435 48858706 4271 False 900.075000 1498 85.720500 996 5270 4 chr6D.!!$F1 4274
5 TraesCS6B01G145100 chr6D 63729178 63730901 1723 False 580.333333 678 86.957333 3679 5288 3 chr6D.!!$F2 1609
6 TraesCS6B01G145100 chr6A 87755361 87762193 6832 False 1564.166667 4198 94.063667 1 6888 6 chr6A.!!$F3 6887
7 TraesCS6B01G145100 chr6A 65802007 65806023 4016 True 1102.666667 1495 84.603667 1227 5270 3 chr6A.!!$R3 4043
8 TraesCS6B01G145100 chr6A 80879067 80880589 1522 False 291.666667 375 84.727333 3697 6045 3 chr6A.!!$F2 2348
9 TraesCS6B01G145100 chr6A 22034641 22035787 1146 True 274.000000 318 84.260000 1637 2823 2 chr6A.!!$R2 1186
10 TraesCS6B01G145100 chr6A 77507344 77508749 1405 False 268.500000 318 84.184000 1637 2823 2 chr6A.!!$F1 1186
11 TraesCS6B01G145100 chr3A 20204312 20205458 1146 False 267.500000 316 84.232000 1637 2823 2 chr3A.!!$F1 1186
12 TraesCS6B01G145100 chr1A 513428182 513429364 1182 True 358.000000 416 84.453500 1449 3889 2 chr1A.!!$R2 2440
13 TraesCS6B01G145100 chr5D 437354642 437355509 867 True 308.000000 351 82.775000 1 413 2 chr5D.!!$R2 412

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 1004 1.234821 CACAAGCGTGCTTAAGGGAA 58.765 50.000 6.8 0.0 36.06 3.97 F
1238 1615 1.226916 CTTGCTCGCTCGCTCATCT 60.227 57.895 0.0 0.0 0.00 2.90 F
2572 3573 1.928868 TGAGTCCTGACATCTGCTCA 58.071 50.000 0.0 0.0 0.00 4.26 F
3114 4133 0.531657 TTCCATGCATTTTGGCTCGG 59.468 50.000 0.0 0.0 34.06 4.63 F
4832 6171 1.270625 TGAAGGCGGTAGGTTTGAGTG 60.271 52.381 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 3152 2.483547 TGAGGGATCCGGGTTTATTGA 58.516 47.619 5.45 0.00 0.00 2.57 R
2955 3960 2.359531 CAGTCACCTAGTACTAGCCAGC 59.640 54.545 22.39 12.71 31.95 4.85 R
3834 4981 0.184933 AGGCACCAGCTGTACCAAAA 59.815 50.000 13.81 0.00 41.70 2.44 R
4957 6301 0.322008 CTGCCAACCTCCTCAACTCC 60.322 60.000 0.00 0.00 0.00 3.85 R
6456 7900 0.034337 TTTTCTGAAGGTCGGGTCGG 59.966 55.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 131 6.089016 GCTTTGATTGTGACATGATGTTCAAG 59.911 38.462 17.07 10.28 31.92 3.02
195 204 2.821546 TCAAGTCTGAACCAGTGAACG 58.178 47.619 0.00 0.00 32.61 3.95
277 286 5.193099 ACTTGTATCTAAACAGGGGCAAT 57.807 39.130 0.00 0.00 31.14 3.56
604 965 3.368843 CGGACTCACACCTTGATCTTCAT 60.369 47.826 0.00 0.00 32.17 2.57
643 1004 1.234821 CACAAGCGTGCTTAAGGGAA 58.765 50.000 6.80 0.00 36.06 3.97
650 1011 2.414161 GCGTGCTTAAGGGAATGTTCAC 60.414 50.000 4.29 0.42 0.00 3.18
725 1087 3.953775 CCAACGCACACCCCCTCT 61.954 66.667 0.00 0.00 0.00 3.69
726 1088 2.358737 CAACGCACACCCCCTCTC 60.359 66.667 0.00 0.00 0.00 3.20
968 1330 6.896021 AGCTACGATTTTATCTACTAGCCA 57.104 37.500 0.00 0.00 30.72 4.75
998 1360 2.741092 GAGGAGTGTCGGCAACCA 59.259 61.111 15.19 0.00 0.00 3.67
1194 1556 2.228822 CGGGTAACAAAAGAAGCATGCT 59.771 45.455 16.30 16.30 39.74 3.79
1236 1613 2.202851 CCTTGCTCGCTCGCTCAT 60.203 61.111 0.00 0.00 0.00 2.90
1238 1615 1.226916 CTTGCTCGCTCGCTCATCT 60.227 57.895 0.00 0.00 0.00 2.90
1482 1860 3.714144 CCTCTTCTACAGGGAGGAGAAA 58.286 50.000 11.27 0.00 46.82 2.52
2179 3152 2.839486 TCTCGAGCTGGTTTTGATGT 57.161 45.000 7.81 0.00 0.00 3.06
2195 3168 3.815809 TGATGTCAATAAACCCGGATCC 58.184 45.455 0.73 0.00 0.00 3.36
2225 3198 5.899547 AGGATCCTTTTTGAAACCTGAAAGT 59.100 36.000 9.02 0.00 0.00 2.66
2572 3573 1.928868 TGAGTCCTGACATCTGCTCA 58.071 50.000 0.00 0.00 0.00 4.26
2705 3706 8.229811 CAGCTCGCTGCATAATGTTATAATTTA 58.770 33.333 5.91 0.00 45.94 1.40
2955 3960 9.543783 GGAATTACCTATACTTGGACTTGTAAG 57.456 37.037 0.00 0.00 35.41 2.34
3024 4029 3.826729 ACCTGCTACCTTCATTTTTCCAC 59.173 43.478 0.00 0.00 0.00 4.02
3083 4102 1.341080 AAATGGCCTGGTTGACTTGG 58.659 50.000 3.32 0.00 0.00 3.61
3090 4109 3.056821 GGCCTGGTTGACTTGGTAAATTC 60.057 47.826 0.00 0.00 0.00 2.17
3114 4133 0.531657 TTCCATGCATTTTGGCTCGG 59.468 50.000 0.00 0.00 34.06 4.63
3424 4546 1.298953 ACCAAGCCCACCAGATGTAT 58.701 50.000 0.00 0.00 0.00 2.29
3482 4606 8.621532 TGGACTCATAAAGGCATTATCATTAC 57.378 34.615 0.00 0.00 32.94 1.89
3662 4786 7.203218 GCAATAAGGTATTCCAATTCCACTTC 58.797 38.462 0.00 0.00 35.89 3.01
4058 5216 2.481441 TCCATAGCTGGATTGACTGGT 58.519 47.619 0.00 0.00 46.95 4.00
4060 5218 2.437281 CCATAGCTGGATTGACTGGTCT 59.563 50.000 0.00 0.00 46.37 3.85
4062 5220 4.101585 CCATAGCTGGATTGACTGGTCTAA 59.898 45.833 0.00 0.00 46.37 2.10
4063 5221 3.618690 AGCTGGATTGACTGGTCTAAC 57.381 47.619 2.38 0.00 0.00 2.34
4064 5222 3.177228 AGCTGGATTGACTGGTCTAACT 58.823 45.455 2.38 0.00 0.00 2.24
4065 5223 3.196685 AGCTGGATTGACTGGTCTAACTC 59.803 47.826 2.38 0.00 0.00 3.01
4581 5901 7.059788 TGTGAGGCCTTATTAGCATTTATTGA 58.940 34.615 6.77 0.00 0.00 2.57
4628 5949 3.608316 AGCTGTCCATCTCTTTGACTC 57.392 47.619 0.00 0.00 0.00 3.36
4634 5955 6.428159 GCTGTCCATCTCTTTGACTCTTAAAA 59.572 38.462 0.00 0.00 0.00 1.52
4640 5963 7.040823 CCATCTCTTTGACTCTTAAAAACTGCT 60.041 37.037 0.00 0.00 0.00 4.24
4718 6049 7.195646 ACATATTGCATTTCTTTATGTCACCG 58.804 34.615 0.00 0.00 29.80 4.94
4793 6124 3.316308 AGCAGAACAGCAGAAAATTCGTT 59.684 39.130 0.00 0.00 36.85 3.85
4826 6157 1.821216 CATTGTGAAGGCGGTAGGTT 58.179 50.000 0.00 0.00 0.00 3.50
4832 6171 1.270625 TGAAGGCGGTAGGTTTGAGTG 60.271 52.381 0.00 0.00 0.00 3.51
4858 6197 4.489810 AGACTGCTTCGTAAAGTCATCAG 58.510 43.478 4.99 0.00 42.28 2.90
4866 6205 6.462073 TTCGTAAAGTCATCAGTAAAGCAC 57.538 37.500 0.00 0.00 0.00 4.40
4867 6206 5.534407 TCGTAAAGTCATCAGTAAAGCACA 58.466 37.500 0.00 0.00 0.00 4.57
4882 6223 8.905702 CAGTAAAGCACACATCTTTTCAAATAC 58.094 33.333 0.00 0.00 35.58 1.89
4957 6301 1.511768 GTCGACCCTTTCCTCGAGG 59.488 63.158 26.32 26.32 39.51 4.63
5290 6660 1.879796 GCTGTGCTTCTTGCCAGTACT 60.880 52.381 0.00 0.00 40.05 2.73
5292 6662 1.270839 TGTGCTTCTTGCCAGTACTCC 60.271 52.381 0.00 0.00 42.00 3.85
5293 6663 0.324943 TGCTTCTTGCCAGTACTCCC 59.675 55.000 0.00 0.00 42.00 4.30
5294 6664 0.615850 GCTTCTTGCCAGTACTCCCT 59.384 55.000 0.00 0.00 35.15 4.20
5296 6666 2.937433 GCTTCTTGCCAGTACTCCCTTC 60.937 54.545 0.00 0.00 35.15 3.46
5297 6667 2.327325 TCTTGCCAGTACTCCCTTCT 57.673 50.000 0.00 0.00 0.00 2.85
5302 6691 1.903183 GCCAGTACTCCCTTCTGTCTT 59.097 52.381 0.00 0.00 0.00 3.01
5356 6745 9.406828 GGGTGAATTTGACTAACTAAAAATGTC 57.593 33.333 0.00 0.00 0.00 3.06
5470 6859 7.630082 AGTTAAATTGATGGCCTAGAACTACA 58.370 34.615 3.32 0.00 0.00 2.74
5551 6942 3.283751 CTGTAGTAGTGCCTCTAGCTGT 58.716 50.000 0.00 0.00 44.23 4.40
5556 6947 7.058525 TGTAGTAGTGCCTCTAGCTGTTATTA 58.941 38.462 0.00 0.00 44.23 0.98
5588 6979 1.544724 ATGTATGCGCTGGTTGGTTT 58.455 45.000 9.73 0.00 0.00 3.27
5596 6987 0.893727 GCTGGTTGGTTTGGATCGGT 60.894 55.000 0.00 0.00 0.00 4.69
5599 6990 1.584495 GTTGGTTTGGATCGGTGCC 59.416 57.895 0.00 0.00 0.00 5.01
5646 7038 4.112634 GCTACGTGCTGATGTTATCTTCA 58.887 43.478 0.00 0.00 38.95 3.02
5649 7041 5.475273 ACGTGCTGATGTTATCTTCAATG 57.525 39.130 0.00 0.00 0.00 2.82
5653 7045 7.121911 CGTGCTGATGTTATCTTCAATGTAAG 58.878 38.462 0.00 0.00 0.00 2.34
5654 7046 7.412853 GTGCTGATGTTATCTTCAATGTAAGG 58.587 38.462 0.00 0.00 0.00 2.69
5655 7047 6.038603 TGCTGATGTTATCTTCAATGTAAGGC 59.961 38.462 0.00 0.00 0.00 4.35
5658 7050 5.450818 TGTTATCTTCAATGTAAGGCCCT 57.549 39.130 0.00 0.00 0.00 5.19
5659 7051 5.192927 TGTTATCTTCAATGTAAGGCCCTG 58.807 41.667 0.00 0.00 0.00 4.45
5660 7052 5.193679 GTTATCTTCAATGTAAGGCCCTGT 58.806 41.667 0.00 0.00 0.00 4.00
5661 7053 3.806949 TCTTCAATGTAAGGCCCTGTT 57.193 42.857 0.00 0.00 0.00 3.16
5662 7054 4.112634 TCTTCAATGTAAGGCCCTGTTT 57.887 40.909 0.00 0.00 0.00 2.83
5663 7055 3.826157 TCTTCAATGTAAGGCCCTGTTTG 59.174 43.478 0.00 0.00 0.00 2.93
5664 7056 2.524306 TCAATGTAAGGCCCTGTTTGG 58.476 47.619 0.00 0.00 0.00 3.28
5665 7057 2.158385 TCAATGTAAGGCCCTGTTTGGT 60.158 45.455 0.00 0.00 0.00 3.67
5666 7058 3.074687 TCAATGTAAGGCCCTGTTTGGTA 59.925 43.478 0.00 0.00 0.00 3.25
5667 7059 3.818295 ATGTAAGGCCCTGTTTGGTAA 57.182 42.857 0.00 0.00 0.00 2.85
5668 7060 3.818295 TGTAAGGCCCTGTTTGGTAAT 57.182 42.857 0.00 0.00 0.00 1.89
5669 7061 3.692690 TGTAAGGCCCTGTTTGGTAATC 58.307 45.455 0.00 0.00 0.00 1.75
5671 7063 2.215942 AGGCCCTGTTTGGTAATCAC 57.784 50.000 0.00 0.00 0.00 3.06
5672 7064 1.182667 GGCCCTGTTTGGTAATCACC 58.817 55.000 0.00 0.00 46.00 4.02
5674 7066 1.459450 CCCTGTTTGGTAATCACCCG 58.541 55.000 0.00 0.00 45.11 5.28
5675 7067 0.808755 CCTGTTTGGTAATCACCCGC 59.191 55.000 0.00 0.00 45.11 6.13
5676 7068 1.613255 CCTGTTTGGTAATCACCCGCT 60.613 52.381 0.00 0.00 45.11 5.52
5677 7069 1.737793 CTGTTTGGTAATCACCCGCTC 59.262 52.381 0.00 0.00 45.11 5.03
5679 7071 0.034863 TTTGGTAATCACCCGCTCCC 60.035 55.000 0.00 0.00 45.11 4.30
5680 7072 2.108362 GGTAATCACCCGCTCCCG 59.892 66.667 0.00 0.00 39.11 5.14
5681 7073 2.428925 GGTAATCACCCGCTCCCGA 61.429 63.158 0.00 0.00 39.11 5.14
5682 7074 1.518774 GTAATCACCCGCTCCCGAA 59.481 57.895 0.00 0.00 36.29 4.30
5683 7075 0.108041 GTAATCACCCGCTCCCGAAA 60.108 55.000 0.00 0.00 36.29 3.46
5684 7076 0.834612 TAATCACCCGCTCCCGAAAT 59.165 50.000 0.00 0.00 36.29 2.17
5685 7077 0.463833 AATCACCCGCTCCCGAAATC 60.464 55.000 0.00 0.00 36.29 2.17
5686 7078 2.325393 ATCACCCGCTCCCGAAATCC 62.325 60.000 0.00 0.00 36.29 3.01
5689 7081 4.830765 CCGCTCCCGAAATCCGCA 62.831 66.667 0.00 0.00 36.29 5.69
5690 7082 3.264897 CGCTCCCGAAATCCGCAG 61.265 66.667 0.00 0.00 36.29 5.18
5691 7083 2.186903 GCTCCCGAAATCCGCAGA 59.813 61.111 0.00 0.00 36.84 4.26
5692 7084 1.884926 GCTCCCGAAATCCGCAGAG 60.885 63.158 0.00 0.00 39.00 3.35
5693 7085 1.884926 CTCCCGAAATCCGCAGAGC 60.885 63.158 0.00 0.00 36.84 4.09
5705 7097 4.016629 CAGAGCGCGCAAACAGCA 62.017 61.111 35.10 0.00 46.13 4.41
5706 7098 3.720193 AGAGCGCGCAAACAGCAG 61.720 61.111 35.10 0.00 46.13 4.24
5710 7102 4.748679 CGCGCAAACAGCAGCTCC 62.749 66.667 8.75 0.00 46.13 4.70
5711 7103 3.360340 GCGCAAACAGCAGCTCCT 61.360 61.111 0.30 0.00 46.13 3.69
5713 7105 1.670406 CGCAAACAGCAGCTCCTCT 60.670 57.895 0.00 0.00 46.13 3.69
5714 7106 1.874562 GCAAACAGCAGCTCCTCTG 59.125 57.895 0.00 5.80 45.62 3.35
5716 7108 1.949547 GCAAACAGCAGCTCCTCTGAT 60.950 52.381 12.54 0.33 45.72 2.90
5717 7109 2.434428 CAAACAGCAGCTCCTCTGATT 58.566 47.619 12.54 5.75 45.72 2.57
5718 7110 2.818432 CAAACAGCAGCTCCTCTGATTT 59.182 45.455 12.54 7.55 45.72 2.17
5719 7111 3.988976 AACAGCAGCTCCTCTGATTTA 57.011 42.857 12.54 0.00 45.72 1.40
5720 7112 3.988976 ACAGCAGCTCCTCTGATTTAA 57.011 42.857 12.54 0.00 45.72 1.52
5722 7114 4.006319 ACAGCAGCTCCTCTGATTTAAAC 58.994 43.478 12.54 0.00 45.72 2.01
5724 7116 5.046304 ACAGCAGCTCCTCTGATTTAAACTA 60.046 40.000 12.54 0.00 45.72 2.24
5725 7117 5.293079 CAGCAGCTCCTCTGATTTAAACTAC 59.707 44.000 0.00 0.00 45.72 2.73
5727 7119 5.293079 GCAGCTCCTCTGATTTAAACTACAG 59.707 44.000 10.63 10.63 45.72 2.74
5730 7122 5.522097 GCTCCTCTGATTTAAACTACAGCTC 59.478 44.000 11.55 0.00 0.00 4.09
5732 7124 4.806247 CCTCTGATTTAAACTACAGCTCCG 59.194 45.833 11.55 0.00 0.00 4.63
5734 7126 3.267483 TGATTTAAACTACAGCTCCGCC 58.733 45.455 0.00 0.00 0.00 6.13
5735 7127 2.843401 TTTAAACTACAGCTCCGCCA 57.157 45.000 0.00 0.00 0.00 5.69
5736 7128 2.843401 TTAAACTACAGCTCCGCCAA 57.157 45.000 0.00 0.00 0.00 4.52
5737 7129 2.088950 TAAACTACAGCTCCGCCAAC 57.911 50.000 0.00 0.00 0.00 3.77
5738 7130 0.396811 AAACTACAGCTCCGCCAACT 59.603 50.000 0.00 0.00 0.00 3.16
5739 7131 0.037232 AACTACAGCTCCGCCAACTC 60.037 55.000 0.00 0.00 0.00 3.01
5740 7132 1.153549 CTACAGCTCCGCCAACTCC 60.154 63.158 0.00 0.00 0.00 3.85
5741 7133 2.890847 CTACAGCTCCGCCAACTCCG 62.891 65.000 0.00 0.00 0.00 4.63
5742 7134 4.379243 CAGCTCCGCCAACTCCGT 62.379 66.667 0.00 0.00 0.00 4.69
5744 7136 2.668550 GCTCCGCCAACTCCGTTT 60.669 61.111 0.00 0.00 0.00 3.60
5745 7137 2.677979 GCTCCGCCAACTCCGTTTC 61.678 63.158 0.00 0.00 0.00 2.78
5747 7139 3.053896 CCGCCAACTCCGTTTCCC 61.054 66.667 0.00 0.00 0.00 3.97
5748 7140 3.419759 CGCCAACTCCGTTTCCCG 61.420 66.667 0.00 0.00 0.00 5.14
5757 7149 4.762825 CGTTTCCCGGAGTTGTGA 57.237 55.556 0.73 0.00 0.00 3.58
5758 7150 2.994990 CGTTTCCCGGAGTTGTGAA 58.005 52.632 0.73 0.00 0.00 3.18
5759 7151 0.865769 CGTTTCCCGGAGTTGTGAAG 59.134 55.000 0.73 0.00 0.00 3.02
5760 7152 0.591659 GTTTCCCGGAGTTGTGAAGC 59.408 55.000 0.73 0.00 0.00 3.86
5761 7153 0.882927 TTTCCCGGAGTTGTGAAGCG 60.883 55.000 0.73 0.00 0.00 4.68
5763 7155 2.342279 CCGGAGTTGTGAAGCGGA 59.658 61.111 0.00 0.00 0.00 5.54
5764 7156 1.738099 CCGGAGTTGTGAAGCGGAG 60.738 63.158 0.00 0.00 0.00 4.63
5778 7170 3.425578 CGGAGCAGTACTGAACAGG 57.574 57.895 27.08 10.40 0.00 4.00
5779 7171 0.108615 CGGAGCAGTACTGAACAGGG 60.109 60.000 27.08 5.93 0.00 4.45
5780 7172 0.391793 GGAGCAGTACTGAACAGGGC 60.392 60.000 27.08 9.03 0.00 5.19
5781 7173 0.321671 GAGCAGTACTGAACAGGGCA 59.678 55.000 27.08 0.00 0.00 5.36
5877 7313 5.301551 TGTTGTCTTTACTGATGCAATTGGT 59.698 36.000 7.72 0.00 0.00 3.67
6075 7513 7.099266 TGAAACAAACATCATCTGACACTTT 57.901 32.000 0.00 0.00 0.00 2.66
6123 7564 2.124403 GTCCTGGCCATGCTGAGG 60.124 66.667 5.51 2.15 32.20 3.86
6131 7572 1.078214 CCATGCTGAGGCGGAAAGA 60.078 57.895 0.00 0.00 42.25 2.52
6132 7573 0.677731 CCATGCTGAGGCGGAAAGAA 60.678 55.000 0.00 0.00 42.25 2.52
6133 7574 0.731417 CATGCTGAGGCGGAAAGAAG 59.269 55.000 0.00 0.00 42.25 2.85
6202 7645 2.235155 ACCCCAAACCAGTTTCAAACAC 59.765 45.455 2.41 0.00 0.00 3.32
6232 7675 0.183971 AACCCGGTCACATTGGTCAA 59.816 50.000 0.00 0.00 0.00 3.18
6235 7678 1.269448 CCCGGTCACATTGGTCAAAAG 59.731 52.381 0.00 0.00 0.00 2.27
6248 7692 7.232127 ACATTGGTCAAAAGAATTGACTCAGAT 59.768 33.333 17.78 7.13 45.88 2.90
6250 7694 7.912056 TGGTCAAAAGAATTGACTCAGATAG 57.088 36.000 17.78 0.00 45.88 2.08
6251 7695 7.679783 TGGTCAAAAGAATTGACTCAGATAGA 58.320 34.615 17.78 0.00 45.88 1.98
6253 7697 7.604164 GGTCAAAAGAATTGACTCAGATAGACA 59.396 37.037 17.78 0.00 45.88 3.41
6257 7701 9.956640 AAAAGAATTGACTCAGATAGACATCTT 57.043 29.630 0.00 0.00 39.62 2.40
6265 7709 7.345653 TGACTCAGATAGACATCTTAAATGGGT 59.654 37.037 0.00 0.00 39.62 4.51
6274 7718 8.038862 AGACATCTTAAATGGGTCTCATATGT 57.961 34.615 1.90 0.00 33.84 2.29
6276 7720 7.227156 ACATCTTAAATGGGTCTCATATGTCC 58.773 38.462 1.90 4.46 34.44 4.02
6284 7728 0.761187 TCTCATATGTCCAGGCTGGC 59.239 55.000 29.02 22.51 37.47 4.85
6285 7729 0.250640 CTCATATGTCCAGGCTGGCC 60.251 60.000 29.02 19.31 37.47 5.36
6286 7730 1.598962 CATATGTCCAGGCTGGCCG 60.599 63.158 29.02 5.72 41.95 6.13
6287 7731 2.822637 ATATGTCCAGGCTGGCCGG 61.823 63.158 29.02 7.41 41.95 6.13
6295 7739 3.556306 GGCTGGCCGGCACCTATA 61.556 66.667 36.64 5.67 38.25 1.31
6296 7740 2.280865 GCTGGCCGGCACCTATAC 60.281 66.667 32.13 9.47 0.00 1.47
6297 7741 2.426023 CTGGCCGGCACCTATACC 59.574 66.667 30.85 8.62 0.00 2.73
6298 7742 2.041301 TGGCCGGCACCTATACCT 60.041 61.111 30.85 0.00 0.00 3.08
6299 7743 2.383245 CTGGCCGGCACCTATACCTG 62.383 65.000 30.85 8.18 0.00 4.00
6300 7744 2.426023 GCCGGCACCTATACCTGG 59.574 66.667 24.80 0.00 0.00 4.45
6301 7745 2.426023 CCGGCACCTATACCTGGC 59.574 66.667 0.00 0.00 0.00 4.85
6302 7746 2.426023 CGGCACCTATACCTGGCC 59.574 66.667 0.00 0.00 41.20 5.36
6303 7747 2.439960 CGGCACCTATACCTGGCCA 61.440 63.158 4.71 4.71 44.82 5.36
6304 7748 1.919771 GGCACCTATACCTGGCCAA 59.080 57.895 7.01 0.00 44.01 4.52
6305 7749 0.257616 GGCACCTATACCTGGCCAAA 59.742 55.000 7.01 0.00 44.01 3.28
6306 7750 1.389555 GCACCTATACCTGGCCAAAC 58.610 55.000 7.01 0.00 0.00 2.93
6307 7751 2.022238 GCACCTATACCTGGCCAAACC 61.022 57.143 7.01 0.00 39.84 3.27
6308 7752 1.564348 CACCTATACCTGGCCAAACCT 59.436 52.381 7.01 0.00 40.22 3.50
6309 7753 1.844497 ACCTATACCTGGCCAAACCTC 59.156 52.381 7.01 0.00 40.22 3.85
6310 7754 1.202651 CCTATACCTGGCCAAACCTCG 60.203 57.143 7.01 0.00 40.22 4.63
6311 7755 0.834612 TATACCTGGCCAAACCTCGG 59.165 55.000 7.01 5.79 40.22 4.63
6312 7756 1.921869 ATACCTGGCCAAACCTCGGG 61.922 60.000 7.01 4.92 40.22 5.14
6351 7795 4.096003 GCCTAGCCAAGCCCGACA 62.096 66.667 0.00 0.00 0.00 4.35
6352 7796 2.125106 CCTAGCCAAGCCCGACAC 60.125 66.667 0.00 0.00 0.00 3.67
6353 7797 2.662596 CTAGCCAAGCCCGACACA 59.337 61.111 0.00 0.00 0.00 3.72
6354 7798 1.003839 CTAGCCAAGCCCGACACAA 60.004 57.895 0.00 0.00 0.00 3.33
6355 7799 0.605319 CTAGCCAAGCCCGACACAAA 60.605 55.000 0.00 0.00 0.00 2.83
6356 7800 0.179015 TAGCCAAGCCCGACACAAAA 60.179 50.000 0.00 0.00 0.00 2.44
6357 7801 1.040339 AGCCAAGCCCGACACAAAAA 61.040 50.000 0.00 0.00 0.00 1.94
6404 7848 3.056213 CCATTGGGCCTGTGTTTCT 57.944 52.632 4.53 0.00 0.00 2.52
6405 7849 2.214376 CCATTGGGCCTGTGTTTCTA 57.786 50.000 4.53 0.00 0.00 2.10
6406 7850 2.094675 CCATTGGGCCTGTGTTTCTAG 58.905 52.381 4.53 0.00 0.00 2.43
6407 7851 2.094675 CATTGGGCCTGTGTTTCTAGG 58.905 52.381 4.53 0.00 37.14 3.02
6411 7855 4.617875 CCTGTGTTTCTAGGCCCG 57.382 61.111 0.00 0.00 0.00 6.13
6412 7856 1.980052 CCTGTGTTTCTAGGCCCGA 59.020 57.895 0.00 0.00 0.00 5.14
6413 7857 0.108138 CCTGTGTTTCTAGGCCCGAG 60.108 60.000 0.00 0.00 0.00 4.63
6414 7858 0.741221 CTGTGTTTCTAGGCCCGAGC 60.741 60.000 0.00 0.00 38.76 5.03
6415 7859 1.192146 TGTGTTTCTAGGCCCGAGCT 61.192 55.000 0.00 0.00 39.73 4.09
6416 7860 0.460459 GTGTTTCTAGGCCCGAGCTC 60.460 60.000 2.73 2.73 39.73 4.09
6417 7861 1.227002 GTTTCTAGGCCCGAGCTCG 60.227 63.158 29.06 29.06 39.73 5.03
6431 7875 4.124351 CTCGGCCCGAGCACGTAA 62.124 66.667 21.84 0.00 46.75 3.18
6432 7876 3.636313 CTCGGCCCGAGCACGTAAA 62.636 63.158 21.84 0.00 46.75 2.01
6433 7877 2.739287 CGGCCCGAGCACGTAAAA 60.739 61.111 0.00 0.00 42.56 1.52
6434 7878 2.736682 CGGCCCGAGCACGTAAAAG 61.737 63.158 0.00 0.00 42.56 2.27
6435 7879 2.479198 GCCCGAGCACGTAAAAGC 59.521 61.111 2.18 0.00 39.53 3.51
6436 7880 3.035576 GCCCGAGCACGTAAAAGCC 62.036 63.158 2.18 0.00 39.53 4.35
6437 7881 2.396157 CCCGAGCACGTAAAAGCCC 61.396 63.158 2.18 0.00 37.88 5.19
6438 7882 2.736682 CCGAGCACGTAAAAGCCCG 61.737 63.158 2.18 0.00 37.88 6.13
6439 7883 2.025418 CGAGCACGTAAAAGCCCGT 61.025 57.895 0.00 0.00 37.90 5.28
6440 7884 1.785951 GAGCACGTAAAAGCCCGTC 59.214 57.895 0.00 0.00 34.59 4.79
6441 7885 1.952266 GAGCACGTAAAAGCCCGTCG 61.952 60.000 0.00 0.00 34.59 5.12
6442 7886 3.018840 GCACGTAAAAGCCCGTCGG 62.019 63.158 3.60 3.60 34.59 4.79
6471 7915 4.452733 GCCCGACCCGACCTTCAG 62.453 72.222 0.00 0.00 0.00 3.02
6472 7916 2.678934 CCCGACCCGACCTTCAGA 60.679 66.667 0.00 0.00 0.00 3.27
6473 7917 2.280552 CCCGACCCGACCTTCAGAA 61.281 63.158 0.00 0.00 0.00 3.02
6474 7918 1.669440 CCGACCCGACCTTCAGAAA 59.331 57.895 0.00 0.00 0.00 2.52
6475 7919 0.034337 CCGACCCGACCTTCAGAAAA 59.966 55.000 0.00 0.00 0.00 2.29
6476 7920 1.541670 CCGACCCGACCTTCAGAAAAA 60.542 52.381 0.00 0.00 0.00 1.94
6477 7921 2.423577 CGACCCGACCTTCAGAAAAAT 58.576 47.619 0.00 0.00 0.00 1.82
6478 7922 2.159627 CGACCCGACCTTCAGAAAAATG 59.840 50.000 0.00 0.00 0.00 2.32
6479 7923 1.886542 ACCCGACCTTCAGAAAAATGC 59.113 47.619 0.00 0.00 0.00 3.56
6480 7924 1.885887 CCCGACCTTCAGAAAAATGCA 59.114 47.619 0.00 0.00 0.00 3.96
6481 7925 2.295909 CCCGACCTTCAGAAAAATGCAA 59.704 45.455 0.00 0.00 0.00 4.08
6482 7926 3.243704 CCCGACCTTCAGAAAAATGCAAA 60.244 43.478 0.00 0.00 0.00 3.68
6483 7927 4.367450 CCGACCTTCAGAAAAATGCAAAA 58.633 39.130 0.00 0.00 0.00 2.44
6484 7928 4.808364 CCGACCTTCAGAAAAATGCAAAAA 59.192 37.500 0.00 0.00 0.00 1.94
6485 7929 5.276820 CCGACCTTCAGAAAAATGCAAAAAC 60.277 40.000 0.00 0.00 0.00 2.43
6486 7930 5.554324 CGACCTTCAGAAAAATGCAAAAACG 60.554 40.000 0.00 0.00 0.00 3.60
6487 7931 5.415221 ACCTTCAGAAAAATGCAAAAACGA 58.585 33.333 0.00 0.00 0.00 3.85
6488 7932 5.290885 ACCTTCAGAAAAATGCAAAAACGAC 59.709 36.000 0.00 0.00 0.00 4.34
6489 7933 5.368552 TTCAGAAAAATGCAAAAACGACG 57.631 34.783 0.00 0.00 0.00 5.12
6490 7934 3.794028 TCAGAAAAATGCAAAAACGACGG 59.206 39.130 0.00 0.00 0.00 4.79
6491 7935 3.060607 CAGAAAAATGCAAAAACGACGGG 60.061 43.478 0.00 0.00 0.00 5.28
6492 7936 1.213491 AAAATGCAAAAACGACGGGC 58.787 45.000 0.00 0.00 0.00 6.13
6493 7937 0.598942 AAATGCAAAAACGACGGGCC 60.599 50.000 0.00 0.00 0.00 5.80
6494 7938 2.428960 AATGCAAAAACGACGGGCCC 62.429 55.000 13.57 13.57 0.00 5.80
6495 7939 4.693525 GCAAAAACGACGGGCCCG 62.694 66.667 42.17 42.17 46.03 6.13
6496 7940 4.032987 CAAAAACGACGGGCCCGG 62.033 66.667 44.99 31.45 44.69 5.73
6533 7977 2.084546 CCTTCGGGCTCAAAAACTAGG 58.915 52.381 0.00 0.00 0.00 3.02
6534 7978 1.468914 CTTCGGGCTCAAAAACTAGGC 59.531 52.381 0.00 0.00 37.55 3.93
6537 7981 2.180674 GGCTCAAAAACTAGGCCCG 58.819 57.895 0.00 0.00 37.12 6.13
6538 7982 0.322187 GGCTCAAAAACTAGGCCCGA 60.322 55.000 0.00 0.00 37.12 5.14
6539 7983 1.087501 GCTCAAAAACTAGGCCCGAG 58.912 55.000 0.00 0.00 0.00 4.63
6540 7984 1.087501 CTCAAAAACTAGGCCCGAGC 58.912 55.000 0.00 0.00 38.76 5.03
6599 8043 4.432741 GCTTCCCAGGGCCAGGAC 62.433 72.222 17.90 2.02 0.00 3.85
6600 8044 2.612115 CTTCCCAGGGCCAGGACT 60.612 66.667 17.90 0.00 0.00 3.85
6601 8045 1.306997 CTTCCCAGGGCCAGGACTA 60.307 63.158 17.90 1.68 0.00 2.59
6623 8067 0.759346 GGCATCCCTCGTATCCAACT 59.241 55.000 0.00 0.00 0.00 3.16
6634 8078 5.018539 TCGTATCCAACTCAAATGTAGGG 57.981 43.478 0.00 0.00 0.00 3.53
6642 8086 3.955471 ACTCAAATGTAGGGTGGACATG 58.045 45.455 0.00 0.00 37.59 3.21
6643 8087 3.330701 ACTCAAATGTAGGGTGGACATGT 59.669 43.478 0.00 0.00 37.59 3.21
6649 8093 2.642311 TGTAGGGTGGACATGTTGATGT 59.358 45.455 0.00 0.00 46.01 3.06
6656 8100 1.378378 ACATGTTGATGTCCGGGCA 59.622 52.632 13.22 13.22 38.53 5.36
6697 8141 0.178855 TAGGCCTACCCCCACAAACT 60.179 55.000 8.91 0.00 36.11 2.66
6698 8142 0.178855 AGGCCTACCCCCACAAACTA 60.179 55.000 1.29 0.00 36.11 2.24
6708 8152 2.560981 CCCCACAAACTACACCAAATCC 59.439 50.000 0.00 0.00 0.00 3.01
6709 8153 3.226777 CCCACAAACTACACCAAATCCA 58.773 45.455 0.00 0.00 0.00 3.41
6710 8154 3.255642 CCCACAAACTACACCAAATCCAG 59.744 47.826 0.00 0.00 0.00 3.86
6711 8155 3.305335 CCACAAACTACACCAAATCCAGC 60.305 47.826 0.00 0.00 0.00 4.85
6712 8156 3.317711 CACAAACTACACCAAATCCAGCA 59.682 43.478 0.00 0.00 0.00 4.41
6713 8157 3.957497 ACAAACTACACCAAATCCAGCAA 59.043 39.130 0.00 0.00 0.00 3.91
6717 8161 1.047801 ACACCAAATCCAGCAAACCC 58.952 50.000 0.00 0.00 0.00 4.11
6718 8162 1.341080 CACCAAATCCAGCAAACCCT 58.659 50.000 0.00 0.00 0.00 4.34
6722 8166 0.786435 AAATCCAGCAAACCCTCCCT 59.214 50.000 0.00 0.00 0.00 4.20
6726 8170 1.301293 CAGCAAACCCTCCCTCCTC 59.699 63.158 0.00 0.00 0.00 3.71
6727 8171 1.162085 AGCAAACCCTCCCTCCTCT 59.838 57.895 0.00 0.00 0.00 3.69
6736 8180 1.002274 TCCCTCCTCTTCCTGCCTC 59.998 63.158 0.00 0.00 0.00 4.70
6746 8190 2.612115 CCTGCCTCCCTCCAACCT 60.612 66.667 0.00 0.00 0.00 3.50
6749 8193 0.322906 CTGCCTCCCTCCAACCTTTC 60.323 60.000 0.00 0.00 0.00 2.62
6756 8200 0.539669 CCTCCAACCTTTCCCGCTTT 60.540 55.000 0.00 0.00 0.00 3.51
6786 8230 1.296392 CGTCCATCACCCTTGCTCA 59.704 57.895 0.00 0.00 0.00 4.26
6790 8234 0.033796 CCATCACCCTTGCTCACCAT 60.034 55.000 0.00 0.00 0.00 3.55
6802 8246 2.821366 CACCATCCTCACTGCCGC 60.821 66.667 0.00 0.00 0.00 6.53
6809 8253 3.842923 CTCACTGCCGCTCCCGAT 61.843 66.667 0.00 0.00 36.29 4.18
6832 8276 0.174845 CCGCCCTAGATGTCGTTCAA 59.825 55.000 0.00 0.00 0.00 2.69
6835 8279 1.066430 GCCCTAGATGTCGTTCAACCA 60.066 52.381 0.00 0.00 0.00 3.67
6859 8303 2.614446 CGACCGTCGTGACAGAGGT 61.614 63.158 12.91 0.00 38.00 3.85
6871 8315 2.992114 AGAGGTCGCGTCTGCCTT 60.992 61.111 5.77 0.00 38.08 4.35
6876 8320 4.717629 TCGCGTCTGCCTTGTCCG 62.718 66.667 5.77 0.00 38.08 4.79
6880 8324 2.649034 GTCTGCCTTGTCCGTCGA 59.351 61.111 0.00 0.00 0.00 4.20
6888 8332 4.124351 TGTCCGTCGACATCCCGC 62.124 66.667 17.16 0.00 44.20 6.13
6889 8333 4.867599 GTCCGTCGACATCCCGCC 62.868 72.222 17.16 0.00 38.99 6.13
6892 8336 4.143333 CGTCGACATCCCGCCCTT 62.143 66.667 17.16 0.00 0.00 3.95
6893 8337 2.511600 GTCGACATCCCGCCCTTG 60.512 66.667 11.55 0.00 0.00 3.61
6894 8338 3.781307 TCGACATCCCGCCCTTGG 61.781 66.667 0.00 0.00 0.00 3.61
6904 8348 2.644992 GCCCTTGGCTTCGTTGTG 59.355 61.111 0.00 0.00 46.69 3.33
6905 8349 2.644992 CCCTTGGCTTCGTTGTGC 59.355 61.111 0.00 0.00 0.00 4.57
6906 8350 2.192861 CCCTTGGCTTCGTTGTGCA 61.193 57.895 0.00 0.00 0.00 4.57
6907 8351 1.732917 CCTTGGCTTCGTTGTGCAA 59.267 52.632 0.00 0.00 0.00 4.08
6908 8352 0.318107 CCTTGGCTTCGTTGTGCAAG 60.318 55.000 0.00 0.00 0.00 4.01
6909 8353 0.936297 CTTGGCTTCGTTGTGCAAGC 60.936 55.000 0.00 0.00 43.72 4.01
6911 8355 2.721231 GCTTCGTTGTGCAAGCCA 59.279 55.556 0.00 0.00 39.36 4.75
6912 8356 1.370900 GCTTCGTTGTGCAAGCCAG 60.371 57.895 0.00 0.00 39.36 4.85
6913 8357 1.785041 GCTTCGTTGTGCAAGCCAGA 61.785 55.000 0.00 0.00 39.36 3.86
6914 8358 0.236711 CTTCGTTGTGCAAGCCAGAG 59.763 55.000 0.00 0.00 0.00 3.35
6915 8359 0.179059 TTCGTTGTGCAAGCCAGAGA 60.179 50.000 0.00 0.00 0.00 3.10
6916 8360 0.179059 TCGTTGTGCAAGCCAGAGAA 60.179 50.000 0.00 0.00 0.00 2.87
6917 8361 0.040958 CGTTGTGCAAGCCAGAGAAC 60.041 55.000 0.00 0.00 0.00 3.01
6918 8362 1.024271 GTTGTGCAAGCCAGAGAACA 58.976 50.000 0.00 0.00 0.00 3.18
6919 8363 1.610522 GTTGTGCAAGCCAGAGAACAT 59.389 47.619 0.00 0.00 0.00 2.71
6920 8364 1.527034 TGTGCAAGCCAGAGAACATC 58.473 50.000 0.00 0.00 0.00 3.06
6921 8365 0.445436 GTGCAAGCCAGAGAACATCG 59.555 55.000 0.00 0.00 0.00 3.84
6922 8366 1.300971 TGCAAGCCAGAGAACATCGC 61.301 55.000 0.00 0.00 0.00 4.58
6923 8367 1.986575 GCAAGCCAGAGAACATCGCC 61.987 60.000 0.00 0.00 0.00 5.54
6924 8368 1.078143 AAGCCAGAGAACATCGCCC 60.078 57.895 0.00 0.00 0.00 6.13
6925 8369 2.859273 AAGCCAGAGAACATCGCCCG 62.859 60.000 0.00 0.00 0.00 6.13
6926 8370 2.202932 CCAGAGAACATCGCCCGG 60.203 66.667 0.00 0.00 0.00 5.73
6927 8371 2.721167 CCAGAGAACATCGCCCGGA 61.721 63.158 0.73 0.00 0.00 5.14
6928 8372 1.227089 CAGAGAACATCGCCCGGAG 60.227 63.158 0.73 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 131 3.574826 AGAACTAGGACAGTGAGACAACC 59.425 47.826 0.00 0.00 37.63 3.77
277 286 5.164620 TGTGATTCAGAAATACTGCAGGA 57.835 39.130 19.93 10.84 45.38 3.86
473 834 9.142014 TGGATTGAAAAGAAAACTAATTCCTGA 57.858 29.630 0.00 0.00 0.00 3.86
604 965 1.770110 AGGACCTGCAGTTGGGTGA 60.770 57.895 13.81 0.00 35.77 4.02
636 997 5.514136 CCACAACTAGGTGAACATTCCCTTA 60.514 44.000 16.48 0.00 41.32 2.69
643 1004 4.804261 GCTCTTCCACAACTAGGTGAACAT 60.804 45.833 16.48 0.00 41.32 2.71
650 1011 0.108138 CCGGCTCTTCCACAACTAGG 60.108 60.000 0.00 0.00 34.01 3.02
950 1312 6.576662 TCCTCTGGCTAGTAGATAAAATCG 57.423 41.667 0.00 0.00 0.00 3.34
968 1330 1.064017 CACTCCTCCTACTGCTCCTCT 60.064 57.143 0.00 0.00 0.00 3.69
998 1360 4.514577 CGAAGCCGGACGCCATCT 62.515 66.667 5.05 0.00 38.78 2.90
1123 1485 3.706373 GAGGACGCCAGGGAGCAA 61.706 66.667 0.00 0.00 0.00 3.91
1222 1599 2.103736 CAGATGAGCGAGCGAGCA 59.896 61.111 9.01 0.00 40.15 4.26
1236 1613 1.078214 CCTGCGAAATCCAGCCAGA 60.078 57.895 0.00 0.00 0.00 3.86
1238 1615 2.045045 CCCTGCGAAATCCAGCCA 60.045 61.111 0.00 0.00 0.00 4.75
1266 1644 3.403624 CTGAACCCTAGCAGCCCA 58.596 61.111 0.00 0.00 0.00 5.36
1482 1860 3.325753 GGCTGCAGGAGGGTGACT 61.326 66.667 17.12 0.00 0.00 3.41
1968 2939 5.916661 TCAGAAACTCCTAGACCATGTAC 57.083 43.478 0.00 0.00 0.00 2.90
2179 3152 2.483547 TGAGGGATCCGGGTTTATTGA 58.516 47.619 5.45 0.00 0.00 2.57
2195 3168 6.096001 CAGGTTTCAAAAAGGATCCTATGAGG 59.904 42.308 16.55 4.36 36.46 3.86
2225 3198 4.160329 AGTTTGATATGGCGGATCTCCTA 58.840 43.478 0.00 0.00 0.00 2.94
2440 3433 4.352001 TGGGCTGGAGCATTTCTAATCTAT 59.648 41.667 0.20 0.00 44.36 1.98
2572 3573 7.224297 AGTATAGCCGAATAACAATTGGTGAT 58.776 34.615 6.16 0.00 0.00 3.06
2705 3706 4.186159 GCAGCAGGAAACATAAATGCAAT 58.814 39.130 0.00 0.00 39.34 3.56
2955 3960 2.359531 CAGTCACCTAGTACTAGCCAGC 59.640 54.545 22.39 12.71 31.95 4.85
3083 4102 9.344309 CCAAAATGCATGGAAAAATGAATTTAC 57.656 29.630 0.00 0.00 42.55 2.01
3090 4109 4.436317 CGAGCCAAAATGCATGGAAAAATG 60.436 41.667 9.06 0.00 40.56 2.32
3406 4450 1.683943 CATACATCTGGTGGGCTTGG 58.316 55.000 0.00 0.00 0.00 3.61
3413 4457 3.409201 CCAGGCCATACATCTGGTG 57.591 57.895 5.01 0.00 42.17 4.17
3424 4546 2.990740 AAATCAGGTTAACCAGGCCA 57.009 45.000 26.26 3.40 38.89 5.36
3482 4606 7.117523 GGTATGCAAGCTTATACAGATCTCTTG 59.882 40.741 17.24 11.73 32.68 3.02
3662 4786 6.053650 TCTAGAATTGGCATGTTCTGATGAG 58.946 40.000 19.83 12.22 36.23 2.90
3834 4981 0.184933 AGGCACCAGCTGTACCAAAA 59.815 50.000 13.81 0.00 41.70 2.44
4054 5212 4.212214 GCAACAGAAAGTGAGTTAGACCAG 59.788 45.833 0.00 0.00 0.00 4.00
4057 5215 4.319118 GCAGCAACAGAAAGTGAGTTAGAC 60.319 45.833 0.00 0.00 0.00 2.59
4058 5216 3.809832 GCAGCAACAGAAAGTGAGTTAGA 59.190 43.478 0.00 0.00 0.00 2.10
4060 5218 3.808728 AGCAGCAACAGAAAGTGAGTTA 58.191 40.909 0.00 0.00 0.00 2.24
4062 5220 2.338577 AGCAGCAACAGAAAGTGAGT 57.661 45.000 0.00 0.00 0.00 3.41
4063 5221 2.159234 GCTAGCAGCAACAGAAAGTGAG 59.841 50.000 10.63 0.00 41.89 3.51
4064 5222 2.146342 GCTAGCAGCAACAGAAAGTGA 58.854 47.619 10.63 0.00 41.89 3.41
4065 5223 2.149578 AGCTAGCAGCAACAGAAAGTG 58.850 47.619 18.83 0.00 45.56 3.16
4581 5901 0.808125 TGTTTCTGCACAAACAGCGT 59.192 45.000 15.25 0.00 40.57 5.07
4628 5949 9.683069 AATGTCACTAAATCAGCAGTTTTTAAG 57.317 29.630 0.00 0.00 0.00 1.85
4718 6049 4.324402 CGAACACAAATTTGAAGCCTATGC 59.676 41.667 24.64 3.49 37.95 3.14
4793 6124 5.754406 CCTTCACAATGCTGTTGAATTTTGA 59.246 36.000 8.99 0.62 31.64 2.69
4826 6157 2.362397 ACGAAGCAGTCTTCTCACTCAA 59.638 45.455 0.00 0.00 45.01 3.02
4832 6171 4.547532 TGACTTTACGAAGCAGTCTTCTC 58.452 43.478 0.00 0.00 45.01 2.87
4851 6190 5.869753 AAGATGTGTGCTTTACTGATGAC 57.130 39.130 0.00 0.00 0.00 3.06
4858 6197 8.795786 TGTATTTGAAAAGATGTGTGCTTTAC 57.204 30.769 0.00 0.00 34.68 2.01
4957 6301 0.322008 CTGCCAACCTCCTCAACTCC 60.322 60.000 0.00 0.00 0.00 3.85
5290 6660 1.067295 ATGCACCAAGACAGAAGGGA 58.933 50.000 0.00 0.00 0.00 4.20
5292 6662 2.636830 CCTATGCACCAAGACAGAAGG 58.363 52.381 0.00 0.00 0.00 3.46
5293 6663 2.636830 CCCTATGCACCAAGACAGAAG 58.363 52.381 0.00 0.00 0.00 2.85
5294 6664 1.340017 GCCCTATGCACCAAGACAGAA 60.340 52.381 0.00 0.00 40.77 3.02
5296 6666 2.785868 GCCCTATGCACCAAGACAG 58.214 57.895 0.00 0.00 40.77 3.51
5320 6709 6.681729 AGTCAAATTCACCCTAGAACTACA 57.318 37.500 0.00 0.00 0.00 2.74
5458 6847 2.347731 GGCAAGTGTGTAGTTCTAGGC 58.652 52.381 0.00 0.00 0.00 3.93
5551 6942 9.824534 CGCATACATAATTCAGCACATTAATAA 57.175 29.630 0.00 0.00 0.00 1.40
5556 6947 4.276678 AGCGCATACATAATTCAGCACATT 59.723 37.500 11.47 0.00 0.00 2.71
5588 6979 1.557371 TCAATAACTGGCACCGATCCA 59.443 47.619 0.00 0.00 0.00 3.41
5596 6987 4.009675 GTCACCTCAATCAATAACTGGCA 58.990 43.478 0.00 0.00 0.00 4.92
5599 6990 4.503910 TCGGTCACCTCAATCAATAACTG 58.496 43.478 0.00 0.00 0.00 3.16
5646 7038 2.694616 ACCAAACAGGGCCTTACATT 57.305 45.000 1.32 0.00 43.89 2.71
5649 7041 3.442625 GTGATTACCAAACAGGGCCTTAC 59.557 47.826 1.32 0.00 43.89 2.34
5653 7045 1.182667 GGTGATTACCAAACAGGGCC 58.817 55.000 0.88 0.00 46.71 5.80
5663 7055 1.963464 TTCGGGAGCGGGTGATTACC 61.963 60.000 0.00 0.00 46.76 2.85
5664 7056 0.108041 TTTCGGGAGCGGGTGATTAC 60.108 55.000 0.00 0.00 0.00 1.89
5665 7057 0.834612 ATTTCGGGAGCGGGTGATTA 59.165 50.000 0.00 0.00 0.00 1.75
5666 7058 0.463833 GATTTCGGGAGCGGGTGATT 60.464 55.000 0.00 0.00 0.00 2.57
5667 7059 1.146263 GATTTCGGGAGCGGGTGAT 59.854 57.895 0.00 0.00 0.00 3.06
5668 7060 2.582436 GATTTCGGGAGCGGGTGA 59.418 61.111 0.00 0.00 0.00 4.02
5669 7061 2.513897 GGATTTCGGGAGCGGGTG 60.514 66.667 0.00 0.00 0.00 4.61
5672 7064 4.830765 TGCGGATTTCGGGAGCGG 62.831 66.667 0.00 0.00 39.69 5.52
5674 7066 1.884926 CTCTGCGGATTTCGGGAGC 60.885 63.158 0.00 0.00 39.69 4.70
5675 7067 1.884926 GCTCTGCGGATTTCGGGAG 60.885 63.158 0.00 1.03 39.69 4.30
5676 7068 2.186903 GCTCTGCGGATTTCGGGA 59.813 61.111 0.00 0.00 39.69 5.14
5688 7080 3.923356 CTGCTGTTTGCGCGCTCTG 62.923 63.158 33.29 23.70 46.63 3.35
5689 7081 3.720193 CTGCTGTTTGCGCGCTCT 61.720 61.111 33.29 0.00 46.63 4.09
5693 7085 4.748679 GGAGCTGCTGTTTGCGCG 62.749 66.667 7.01 0.00 46.63 6.86
5694 7086 3.319926 GAGGAGCTGCTGTTTGCGC 62.320 63.158 14.48 0.00 46.63 6.09
5696 7088 0.604780 TCAGAGGAGCTGCTGTTTGC 60.605 55.000 14.48 0.00 44.52 3.68
5697 7089 2.110901 ATCAGAGGAGCTGCTGTTTG 57.889 50.000 14.48 8.55 44.52 2.93
5698 7090 2.875094 AATCAGAGGAGCTGCTGTTT 57.125 45.000 14.48 5.47 44.52 2.83
5699 7091 2.875094 AAATCAGAGGAGCTGCTGTT 57.125 45.000 14.48 0.00 44.52 3.16
5700 7092 3.988976 TTAAATCAGAGGAGCTGCTGT 57.011 42.857 14.48 5.49 44.52 4.40
5701 7093 4.260170 AGTTTAAATCAGAGGAGCTGCTG 58.740 43.478 14.48 7.00 44.52 4.41
5702 7094 4.566426 AGTTTAAATCAGAGGAGCTGCT 57.434 40.909 7.79 7.79 44.52 4.24
5703 7095 5.178797 TGTAGTTTAAATCAGAGGAGCTGC 58.821 41.667 0.00 0.00 44.52 5.25
5704 7096 5.293079 GCTGTAGTTTAAATCAGAGGAGCTG 59.707 44.000 16.53 0.00 46.31 4.24
5705 7097 5.188751 AGCTGTAGTTTAAATCAGAGGAGCT 59.811 40.000 16.53 9.64 0.00 4.09
5706 7098 5.423886 AGCTGTAGTTTAAATCAGAGGAGC 58.576 41.667 16.53 8.07 0.00 4.70
5707 7099 6.045955 GGAGCTGTAGTTTAAATCAGAGGAG 58.954 44.000 16.53 0.58 0.00 3.69
5708 7100 5.394224 CGGAGCTGTAGTTTAAATCAGAGGA 60.394 44.000 16.53 0.00 0.00 3.71
5710 7102 5.957910 CGGAGCTGTAGTTTAAATCAGAG 57.042 43.478 16.53 6.88 0.00 3.35
5740 7132 0.865769 CTTCACAACTCCGGGAAACG 59.134 55.000 0.00 0.00 43.80 3.60
5741 7133 0.591659 GCTTCACAACTCCGGGAAAC 59.408 55.000 0.00 0.00 0.00 2.78
5742 7134 0.882927 CGCTTCACAACTCCGGGAAA 60.883 55.000 0.00 0.00 0.00 3.13
5744 7136 2.342279 CGCTTCACAACTCCGGGA 59.658 61.111 0.00 0.00 0.00 5.14
5745 7137 2.742372 CCGCTTCACAACTCCGGG 60.742 66.667 0.00 0.00 35.54 5.73
5747 7139 2.383527 GCTCCGCTTCACAACTCCG 61.384 63.158 0.00 0.00 0.00 4.63
5748 7140 1.294659 CTGCTCCGCTTCACAACTCC 61.295 60.000 0.00 0.00 0.00 3.85
5749 7141 0.601311 ACTGCTCCGCTTCACAACTC 60.601 55.000 0.00 0.00 0.00 3.01
5751 7143 0.790814 GTACTGCTCCGCTTCACAAC 59.209 55.000 0.00 0.00 0.00 3.32
5752 7144 0.679505 AGTACTGCTCCGCTTCACAA 59.320 50.000 0.00 0.00 0.00 3.33
5753 7145 0.038251 CAGTACTGCTCCGCTTCACA 60.038 55.000 10.54 0.00 0.00 3.58
5754 7146 0.243907 TCAGTACTGCTCCGCTTCAC 59.756 55.000 18.45 0.00 0.00 3.18
5756 7148 1.336887 TGTTCAGTACTGCTCCGCTTC 60.337 52.381 18.45 2.99 0.00 3.86
5757 7149 0.679505 TGTTCAGTACTGCTCCGCTT 59.320 50.000 18.45 0.00 0.00 4.68
5758 7150 0.244994 CTGTTCAGTACTGCTCCGCT 59.755 55.000 18.45 0.00 0.00 5.52
5759 7151 0.737715 CCTGTTCAGTACTGCTCCGC 60.738 60.000 18.45 6.53 0.00 5.54
5760 7152 0.108615 CCCTGTTCAGTACTGCTCCG 60.109 60.000 18.45 9.25 0.00 4.63
5761 7153 0.391793 GCCCTGTTCAGTACTGCTCC 60.392 60.000 18.45 8.44 0.00 4.70
5763 7155 0.987294 ATGCCCTGTTCAGTACTGCT 59.013 50.000 18.45 0.00 0.00 4.24
5764 7156 2.691409 TATGCCCTGTTCAGTACTGC 57.309 50.000 18.45 5.78 0.00 4.40
5765 7157 7.931407 TGTATATTTATGCCCTGTTCAGTACTG 59.069 37.037 17.17 17.17 0.00 2.74
5769 7161 6.062095 GGTGTATATTTATGCCCTGTTCAGT 58.938 40.000 0.00 0.00 0.00 3.41
5771 7163 5.060506 CGGTGTATATTTATGCCCTGTTCA 58.939 41.667 0.00 0.00 0.00 3.18
5772 7164 4.083484 GCGGTGTATATTTATGCCCTGTTC 60.083 45.833 0.00 0.00 0.00 3.18
5773 7165 3.818773 GCGGTGTATATTTATGCCCTGTT 59.181 43.478 0.00 0.00 0.00 3.16
5774 7166 3.181449 TGCGGTGTATATTTATGCCCTGT 60.181 43.478 0.00 0.00 0.00 4.00
5775 7167 3.407698 TGCGGTGTATATTTATGCCCTG 58.592 45.455 0.00 0.00 0.00 4.45
5777 7169 5.183140 AGAAATGCGGTGTATATTTATGCCC 59.817 40.000 0.00 0.00 0.00 5.36
5778 7170 6.072728 TCAGAAATGCGGTGTATATTTATGCC 60.073 38.462 0.00 0.00 34.65 4.40
5779 7171 6.797033 GTCAGAAATGCGGTGTATATTTATGC 59.203 38.462 0.00 0.00 34.65 3.14
5780 7172 7.798516 GTGTCAGAAATGCGGTGTATATTTATG 59.201 37.037 0.00 0.00 35.48 1.90
5781 7173 7.715249 AGTGTCAGAAATGCGGTGTATATTTAT 59.285 33.333 0.00 0.00 0.00 1.40
5877 7313 0.245539 CGAAAGAAGAGTGCCCGGTA 59.754 55.000 0.00 0.00 0.00 4.02
6075 7513 2.048597 CCACGGCTCGTTGCTACA 60.049 61.111 0.00 0.00 38.32 2.74
6123 7564 0.391793 CCCTCACCTCTTCTTTCCGC 60.392 60.000 0.00 0.00 0.00 5.54
6131 7572 1.430369 AAAGCCTGCCCTCACCTCTT 61.430 55.000 0.00 0.00 0.00 2.85
6132 7573 1.849823 AAAGCCTGCCCTCACCTCT 60.850 57.895 0.00 0.00 0.00 3.69
6133 7574 1.676967 CAAAGCCTGCCCTCACCTC 60.677 63.158 0.00 0.00 0.00 3.85
6248 7692 9.159254 ACATATGAGACCCATTTAAGATGTCTA 57.841 33.333 10.38 0.00 36.48 2.59
6250 7694 7.389053 GGACATATGAGACCCATTTAAGATGTC 59.611 40.741 10.38 0.00 41.27 3.06
6251 7695 7.147320 TGGACATATGAGACCCATTTAAGATGT 60.147 37.037 10.38 0.00 34.10 3.06
6253 7697 7.392766 TGGACATATGAGACCCATTTAAGAT 57.607 36.000 10.38 0.00 36.71 2.40
6257 7701 4.202461 GCCTGGACATATGAGACCCATTTA 60.202 45.833 10.38 0.00 36.71 1.40
6265 7709 0.761187 GCCAGCCTGGACATATGAGA 59.239 55.000 16.85 0.00 40.96 3.27
6284 7728 2.426023 GCCAGGTATAGGTGCCGG 59.574 66.667 0.00 0.00 34.92 6.13
6285 7729 1.978455 TTGGCCAGGTATAGGTGCCG 61.978 60.000 5.11 0.00 45.12 5.69
6286 7730 0.257616 TTTGGCCAGGTATAGGTGCC 59.742 55.000 5.11 0.00 42.49 5.01
6287 7731 1.389555 GTTTGGCCAGGTATAGGTGC 58.610 55.000 5.11 0.00 0.00 5.01
6288 7732 1.564348 AGGTTTGGCCAGGTATAGGTG 59.436 52.381 5.11 0.00 40.61 4.00
6289 7733 1.844497 GAGGTTTGGCCAGGTATAGGT 59.156 52.381 5.11 0.00 40.61 3.08
6290 7734 1.202651 CGAGGTTTGGCCAGGTATAGG 60.203 57.143 5.11 0.00 40.61 2.57
6291 7735 1.202651 CCGAGGTTTGGCCAGGTATAG 60.203 57.143 5.11 0.00 40.61 1.31
6292 7736 0.834612 CCGAGGTTTGGCCAGGTATA 59.165 55.000 5.11 0.00 40.61 1.47
6293 7737 1.607612 CCGAGGTTTGGCCAGGTAT 59.392 57.895 5.11 0.00 40.61 2.73
6294 7738 2.598787 CCCGAGGTTTGGCCAGGTA 61.599 63.158 5.11 0.00 40.61 3.08
6295 7739 3.966543 CCCGAGGTTTGGCCAGGT 61.967 66.667 5.11 0.00 40.61 4.00
6322 7766 4.222847 CTAGGCCCGTCCCGAAGC 62.223 72.222 0.00 0.00 34.51 3.86
6323 7767 4.222847 GCTAGGCCCGTCCCGAAG 62.223 72.222 0.00 0.00 34.51 3.79
6335 7779 2.125106 GTGTCGGGCTTGGCTAGG 60.125 66.667 0.00 0.00 0.00 3.02
6336 7780 0.605319 TTTGTGTCGGGCTTGGCTAG 60.605 55.000 0.00 0.00 0.00 3.42
6337 7781 0.179015 TTTTGTGTCGGGCTTGGCTA 60.179 50.000 0.00 0.00 0.00 3.93
6338 7782 1.040339 TTTTTGTGTCGGGCTTGGCT 61.040 50.000 0.00 0.00 0.00 4.75
6339 7783 1.439644 TTTTTGTGTCGGGCTTGGC 59.560 52.632 0.00 0.00 0.00 4.52
6386 7830 2.094675 CTAGAAACACAGGCCCAATGG 58.905 52.381 0.00 0.00 0.00 3.16
6387 7831 2.094675 CCTAGAAACACAGGCCCAATG 58.905 52.381 0.00 0.00 0.00 2.82
6388 7832 2.514458 CCTAGAAACACAGGCCCAAT 57.486 50.000 0.00 0.00 0.00 3.16
6394 7838 0.108138 CTCGGGCCTAGAAACACAGG 60.108 60.000 0.84 0.00 34.85 4.00
6395 7839 0.741221 GCTCGGGCCTAGAAACACAG 60.741 60.000 9.63 0.00 0.00 3.66
6396 7840 1.192146 AGCTCGGGCCTAGAAACACA 61.192 55.000 9.63 0.00 39.73 3.72
6397 7841 0.460459 GAGCTCGGGCCTAGAAACAC 60.460 60.000 9.63 0.00 39.73 3.32
6398 7842 1.898154 GAGCTCGGGCCTAGAAACA 59.102 57.895 9.63 0.00 39.73 2.83
6399 7843 1.227002 CGAGCTCGGGCCTAGAAAC 60.227 63.158 28.40 0.00 39.73 2.78
6400 7844 3.207354 CGAGCTCGGGCCTAGAAA 58.793 61.111 28.40 0.00 39.73 2.52
6415 7859 3.223710 TTTTACGTGCTCGGGCCGA 62.224 57.895 29.14 29.14 41.85 5.54
6416 7860 2.736682 CTTTTACGTGCTCGGGCCG 61.737 63.158 22.51 22.51 41.85 6.13
6417 7861 3.035576 GCTTTTACGTGCTCGGGCC 62.036 63.158 3.94 0.00 41.85 5.80
6418 7862 2.479198 GCTTTTACGTGCTCGGGC 59.521 61.111 13.32 0.00 41.85 6.13
6419 7863 2.396157 GGGCTTTTACGTGCTCGGG 61.396 63.158 13.32 0.00 41.85 5.14
6420 7864 3.174788 GGGCTTTTACGTGCTCGG 58.825 61.111 13.32 0.00 41.85 4.63
6421 7865 2.776072 CGGGCTTTTACGTGCTCG 59.224 61.111 6.63 6.63 46.69 5.03
6422 7866 1.785951 GACGGGCTTTTACGTGCTC 59.214 57.895 0.00 0.00 44.24 4.26
6423 7867 2.025418 CGACGGGCTTTTACGTGCT 61.025 57.895 0.00 0.00 44.24 4.40
6424 7868 2.472934 CGACGGGCTTTTACGTGC 59.527 61.111 0.00 0.00 44.24 5.34
6425 7869 2.385091 CCCGACGGGCTTTTACGTG 61.385 63.158 22.37 0.00 44.24 4.49
6454 7898 4.452733 CTGAAGGTCGGGTCGGGC 62.453 72.222 0.00 0.00 0.00 6.13
6455 7899 1.823169 TTTCTGAAGGTCGGGTCGGG 61.823 60.000 0.00 0.00 0.00 5.14
6456 7900 0.034337 TTTTCTGAAGGTCGGGTCGG 59.966 55.000 0.00 0.00 0.00 4.79
6457 7901 1.873698 TTTTTCTGAAGGTCGGGTCG 58.126 50.000 0.00 0.00 0.00 4.79
6458 7902 2.095212 GCATTTTTCTGAAGGTCGGGTC 60.095 50.000 0.00 0.00 0.00 4.46
6459 7903 1.886542 GCATTTTTCTGAAGGTCGGGT 59.113 47.619 0.00 0.00 0.00 5.28
6460 7904 1.885887 TGCATTTTTCTGAAGGTCGGG 59.114 47.619 0.00 0.00 0.00 5.14
6461 7905 3.641437 TTGCATTTTTCTGAAGGTCGG 57.359 42.857 0.00 0.00 0.00 4.79
6462 7906 5.554324 CGTTTTTGCATTTTTCTGAAGGTCG 60.554 40.000 0.00 0.00 0.00 4.79
6463 7907 5.518487 TCGTTTTTGCATTTTTCTGAAGGTC 59.482 36.000 0.00 0.00 0.00 3.85
6464 7908 5.290885 GTCGTTTTTGCATTTTTCTGAAGGT 59.709 36.000 0.00 0.00 0.00 3.50
6465 7909 5.554324 CGTCGTTTTTGCATTTTTCTGAAGG 60.554 40.000 0.00 0.00 0.00 3.46
6466 7910 5.414535 CGTCGTTTTTGCATTTTTCTGAAG 58.585 37.500 0.00 0.00 0.00 3.02
6467 7911 4.266502 CCGTCGTTTTTGCATTTTTCTGAA 59.733 37.500 0.00 0.00 0.00 3.02
6468 7912 3.794028 CCGTCGTTTTTGCATTTTTCTGA 59.206 39.130 0.00 0.00 0.00 3.27
6469 7913 3.060607 CCCGTCGTTTTTGCATTTTTCTG 60.061 43.478 0.00 0.00 0.00 3.02
6470 7914 3.120041 CCCGTCGTTTTTGCATTTTTCT 58.880 40.909 0.00 0.00 0.00 2.52
6471 7915 2.348125 GCCCGTCGTTTTTGCATTTTTC 60.348 45.455 0.00 0.00 0.00 2.29
6472 7916 1.595328 GCCCGTCGTTTTTGCATTTTT 59.405 42.857 0.00 0.00 0.00 1.94
6473 7917 1.213491 GCCCGTCGTTTTTGCATTTT 58.787 45.000 0.00 0.00 0.00 1.82
6474 7918 0.598942 GGCCCGTCGTTTTTGCATTT 60.599 50.000 0.00 0.00 0.00 2.32
6475 7919 1.006688 GGCCCGTCGTTTTTGCATT 60.007 52.632 0.00 0.00 0.00 3.56
6476 7920 2.648454 GGCCCGTCGTTTTTGCAT 59.352 55.556 0.00 0.00 0.00 3.96
6477 7921 3.597728 GGGCCCGTCGTTTTTGCA 61.598 61.111 5.69 0.00 0.00 4.08
6478 7922 4.693525 CGGGCCCGTCGTTTTTGC 62.694 66.667 36.64 0.00 34.35 3.68
6479 7923 4.032987 CCGGGCCCGTCGTTTTTG 62.033 66.667 40.52 20.46 37.81 2.44
6514 7958 1.468914 GCCTAGTTTTTGAGCCCGAAG 59.531 52.381 0.00 0.00 0.00 3.79
6515 7959 1.530323 GCCTAGTTTTTGAGCCCGAA 58.470 50.000 0.00 0.00 0.00 4.30
6516 7960 0.322187 GGCCTAGTTTTTGAGCCCGA 60.322 55.000 0.00 0.00 37.66 5.14
6517 7961 2.180674 GGCCTAGTTTTTGAGCCCG 58.819 57.895 0.00 0.00 37.66 6.13
6519 7963 0.322187 TCGGGCCTAGTTTTTGAGCC 60.322 55.000 0.84 0.00 43.09 4.70
6520 7964 1.087501 CTCGGGCCTAGTTTTTGAGC 58.912 55.000 0.84 0.00 0.00 4.26
6521 7965 1.087501 GCTCGGGCCTAGTTTTTGAG 58.912 55.000 0.84 1.81 0.00 3.02
6522 7966 3.243128 GCTCGGGCCTAGTTTTTGA 57.757 52.632 0.84 0.00 0.00 2.69
6582 8026 4.432741 GTCCTGGCCCTGGGAAGC 62.433 72.222 19.27 0.00 33.01 3.86
6583 8027 1.306997 TAGTCCTGGCCCTGGGAAG 60.307 63.158 19.27 12.87 33.01 3.46
6584 8028 1.615424 GTAGTCCTGGCCCTGGGAA 60.615 63.158 19.27 2.14 33.01 3.97
6585 8029 2.040606 GTAGTCCTGGCCCTGGGA 59.959 66.667 19.27 8.36 0.00 4.37
6586 8030 3.090532 GGTAGTCCTGGCCCTGGG 61.091 72.222 8.86 8.86 0.00 4.45
6587 8031 3.470888 CGGTAGTCCTGGCCCTGG 61.471 72.222 0.00 2.20 0.00 4.45
6588 8032 3.470888 CCGGTAGTCCTGGCCCTG 61.471 72.222 0.00 0.00 0.00 4.45
6591 8035 3.462199 GATGCCGGTAGTCCTGGCC 62.462 68.421 1.90 0.00 45.64 5.36
6592 8036 2.109181 GATGCCGGTAGTCCTGGC 59.891 66.667 1.90 0.00 46.05 4.85
6593 8037 2.808206 GGGATGCCGGTAGTCCTGG 61.808 68.421 17.53 0.00 32.55 4.45
6594 8038 1.749334 GAGGGATGCCGGTAGTCCTG 61.749 65.000 18.50 0.00 32.55 3.86
6595 8039 1.457831 GAGGGATGCCGGTAGTCCT 60.458 63.158 14.61 14.61 32.55 3.85
6596 8040 2.857744 CGAGGGATGCCGGTAGTCC 61.858 68.421 1.90 8.37 0.00 3.85
6597 8041 0.820891 TACGAGGGATGCCGGTAGTC 60.821 60.000 1.90 0.00 0.00 2.59
6598 8042 0.178970 ATACGAGGGATGCCGGTAGT 60.179 55.000 1.90 8.26 0.00 2.73
6599 8043 0.526662 GATACGAGGGATGCCGGTAG 59.473 60.000 1.90 3.32 0.00 3.18
6600 8044 0.896940 GGATACGAGGGATGCCGGTA 60.897 60.000 1.90 11.46 0.00 4.02
6601 8045 2.207924 GGATACGAGGGATGCCGGT 61.208 63.158 1.90 8.00 0.00 5.28
6623 8067 4.078537 CAACATGTCCACCCTACATTTGA 58.921 43.478 0.00 0.00 35.39 2.69
6642 8086 2.358247 ACGTGCCCGGACATCAAC 60.358 61.111 0.73 0.00 38.78 3.18
6643 8087 2.047655 GACGTGCCCGGACATCAA 60.048 61.111 0.73 0.00 38.78 2.57
6697 8141 2.158385 AGGGTTTGCTGGATTTGGTGTA 60.158 45.455 0.00 0.00 0.00 2.90
6698 8142 1.047801 GGGTTTGCTGGATTTGGTGT 58.952 50.000 0.00 0.00 0.00 4.16
6708 8152 1.204113 AGAGGAGGGAGGGTTTGCTG 61.204 60.000 0.00 0.00 0.00 4.41
6709 8153 0.476611 AAGAGGAGGGAGGGTTTGCT 60.477 55.000 0.00 0.00 0.00 3.91
6710 8154 0.034960 GAAGAGGAGGGAGGGTTTGC 60.035 60.000 0.00 0.00 0.00 3.68
6711 8155 0.621082 GGAAGAGGAGGGAGGGTTTG 59.379 60.000 0.00 0.00 0.00 2.93
6712 8156 0.498685 AGGAAGAGGAGGGAGGGTTT 59.501 55.000 0.00 0.00 0.00 3.27
6713 8157 0.252927 CAGGAAGAGGAGGGAGGGTT 60.253 60.000 0.00 0.00 0.00 4.11
6717 8161 1.002792 AGGCAGGAAGAGGAGGGAG 59.997 63.158 0.00 0.00 0.00 4.30
6718 8162 1.002274 GAGGCAGGAAGAGGAGGGA 59.998 63.158 0.00 0.00 0.00 4.20
6722 8166 1.002274 GAGGGAGGCAGGAAGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
6726 8170 1.301293 GTTGGAGGGAGGCAGGAAG 59.699 63.158 0.00 0.00 0.00 3.46
6727 8171 2.231380 GGTTGGAGGGAGGCAGGAA 61.231 63.158 0.00 0.00 0.00 3.36
6736 8180 2.361230 GCGGGAAAGGTTGGAGGG 60.361 66.667 0.00 0.00 0.00 4.30
6773 8217 0.257039 GGATGGTGAGCAAGGGTGAT 59.743 55.000 0.00 0.00 0.00 3.06
6786 8230 3.005539 AGCGGCAGTGAGGATGGT 61.006 61.111 1.45 0.00 0.00 3.55
6807 8251 0.318762 GACATCTAGGGCGGTGGATC 59.681 60.000 0.00 0.00 0.00 3.36
6809 8253 2.125326 CGACATCTAGGGCGGTGGA 61.125 63.158 0.00 0.00 0.00 4.02
6812 8256 0.968901 TGAACGACATCTAGGGCGGT 60.969 55.000 0.00 0.00 0.00 5.68
6835 8279 4.648626 TCACGACGGTCGGGGACT 62.649 66.667 30.12 8.82 44.75 3.85
6850 8294 2.954611 CAGACGCGACCTCTGTCA 59.045 61.111 15.93 0.00 41.85 3.58
6859 8303 4.717629 CGGACAAGGCAGACGCGA 62.718 66.667 15.93 0.00 39.92 5.87
6876 8320 2.511600 CAAGGGCGGGATGTCGAC 60.512 66.667 9.11 9.11 37.46 4.20
6888 8332 1.733402 TTGCACAACGAAGCCAAGGG 61.733 55.000 0.00 0.00 0.00 3.95
6889 8333 0.318107 CTTGCACAACGAAGCCAAGG 60.318 55.000 0.00 0.00 0.00 3.61
6890 8334 0.936297 GCTTGCACAACGAAGCCAAG 60.936 55.000 0.00 0.00 38.96 3.61
6891 8335 1.065600 GCTTGCACAACGAAGCCAA 59.934 52.632 0.00 0.00 38.96 4.52
6892 8336 2.721231 GCTTGCACAACGAAGCCA 59.279 55.556 0.00 0.00 38.96 4.75
6894 8338 1.370900 CTGGCTTGCACAACGAAGC 60.371 57.895 0.00 0.00 43.27 3.86
6895 8339 0.236711 CTCTGGCTTGCACAACGAAG 59.763 55.000 0.00 0.00 0.00 3.79
6896 8340 0.179059 TCTCTGGCTTGCACAACGAA 60.179 50.000 0.00 0.00 0.00 3.85
6897 8341 0.179059 TTCTCTGGCTTGCACAACGA 60.179 50.000 0.00 0.00 0.00 3.85
6898 8342 0.040958 GTTCTCTGGCTTGCACAACG 60.041 55.000 0.00 0.00 0.00 4.10
6899 8343 1.024271 TGTTCTCTGGCTTGCACAAC 58.976 50.000 0.00 0.00 0.00 3.32
6900 8344 1.881973 GATGTTCTCTGGCTTGCACAA 59.118 47.619 0.00 0.00 0.00 3.33
6901 8345 1.527034 GATGTTCTCTGGCTTGCACA 58.473 50.000 0.00 0.00 0.00 4.57
6902 8346 0.445436 CGATGTTCTCTGGCTTGCAC 59.555 55.000 0.00 0.00 0.00 4.57
6903 8347 1.300971 GCGATGTTCTCTGGCTTGCA 61.301 55.000 0.00 0.00 0.00 4.08
6904 8348 1.427020 GCGATGTTCTCTGGCTTGC 59.573 57.895 0.00 0.00 0.00 4.01
6905 8349 1.372087 GGGCGATGTTCTCTGGCTTG 61.372 60.000 0.00 0.00 0.00 4.01
6906 8350 1.078143 GGGCGATGTTCTCTGGCTT 60.078 57.895 0.00 0.00 0.00 4.35
6907 8351 2.586792 GGGCGATGTTCTCTGGCT 59.413 61.111 0.00 0.00 0.00 4.75
6908 8352 2.892425 CGGGCGATGTTCTCTGGC 60.892 66.667 0.00 0.00 0.00 4.85
6909 8353 2.202932 CCGGGCGATGTTCTCTGG 60.203 66.667 0.00 0.00 0.00 3.86
6910 8354 1.227089 CTCCGGGCGATGTTCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
6911 8355 2.427245 CCTCCGGGCGATGTTCTCT 61.427 63.158 0.00 0.00 0.00 3.10
6912 8356 2.107141 CCTCCGGGCGATGTTCTC 59.893 66.667 0.00 0.00 0.00 2.87
6913 8357 2.363795 TCCTCCGGGCGATGTTCT 60.364 61.111 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.