Multiple sequence alignment - TraesCS6B01G144700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G144700 chr6B 100.000 2624 0 0 1 2624 144373265 144370642 0.000000e+00 4846.0
1 TraesCS6B01G144700 chr6B 81.313 198 30 5 394 587 544059024 544058830 1.260000e-33 154.0
2 TraesCS6B01G144700 chr6B 79.699 133 23 2 415 543 552871530 552871398 2.780000e-15 93.5
3 TraesCS6B01G144700 chr6D 91.991 1411 86 14 839 2238 69271068 69269674 0.000000e+00 1954.0
4 TraesCS6B01G144700 chr6D 93.876 1290 60 9 580 1860 69299495 69298216 0.000000e+00 1927.0
5 TraesCS6B01G144700 chr6D 84.667 300 19 9 2259 2552 69269688 69269410 9.250000e-70 274.0
6 TraesCS6B01G144700 chr6D 88.205 195 17 6 2413 2604 69296097 69295906 7.310000e-56 228.0
7 TraesCS6B01G144700 chr6D 78.248 331 63 8 1914 2238 69298046 69297719 1.230000e-48 204.0
8 TraesCS6B01G144700 chr6D 90.826 109 8 2 2259 2366 69297733 69297626 7.570000e-31 145.0
9 TraesCS6B01G144700 chr6A 94.806 1213 45 8 580 1787 87497638 87496439 0.000000e+00 1875.0
10 TraesCS6B01G144700 chr6A 88.619 1028 74 17 839 1854 87312429 87311433 0.000000e+00 1210.0
11 TraesCS6B01G144700 chr6A 85.714 301 25 11 2279 2575 87311094 87310808 4.240000e-78 302.0
12 TraesCS6B01G144700 chr6A 83.700 227 29 5 363 582 143976960 143977185 9.520000e-50 207.0
13 TraesCS6B01G144700 chr6A 82.692 156 18 8 427 580 73657569 73657717 2.120000e-26 130.0
14 TraesCS6B01G144700 chr6A 95.745 47 0 2 2560 2604 87310794 87310748 1.010000e-09 75.0
15 TraesCS6B01G144700 chr1B 97.531 243 5 1 1 242 667414229 667414471 5.230000e-112 414.0
16 TraesCS6B01G144700 chr1B 76.567 367 50 26 244 587 32178837 32179190 4.490000e-38 169.0
17 TraesCS6B01G144700 chr3B 96.721 244 7 1 1 243 51931863 51931620 3.140000e-109 405.0
18 TraesCS6B01G144700 chr3B 96.311 244 8 1 1 243 806068718 806068475 1.460000e-107 399.0
19 TraesCS6B01G144700 chr3B 95.918 245 9 1 1 244 756396359 756396115 1.890000e-106 396.0
20 TraesCS6B01G144700 chr3B 94.841 252 10 3 1 249 758059278 758059027 8.810000e-105 390.0
21 TraesCS6B01G144700 chr3B 84.490 245 22 9 346 582 363323501 363323737 7.310000e-56 228.0
22 TraesCS6B01G144700 chr3B 79.412 238 29 7 348 582 20380202 20379982 1.630000e-32 150.0
23 TraesCS6B01G144700 chr5B 96.708 243 6 2 3 244 40072822 40072581 1.130000e-108 403.0
24 TraesCS6B01G144700 chr5B 83.815 173 16 11 403 569 664726418 664726584 1.260000e-33 154.0
25 TraesCS6B01G144700 chr7B 95.902 244 9 1 1 243 595832252 595832009 6.810000e-106 394.0
26 TraesCS6B01G144700 chr4B 95.902 244 9 1 1 243 666697367 666697124 6.810000e-106 394.0
27 TraesCS6B01G144700 chr2B 95.902 244 9 1 1 243 770115253 770115496 6.810000e-106 394.0
28 TraesCS6B01G144700 chr2B 96.970 33 1 0 310 342 135767782 135767814 3.650000e-04 56.5
29 TraesCS6B01G144700 chrUn 85.833 240 21 10 352 587 93026783 93026553 2.610000e-60 243.0
30 TraesCS6B01G144700 chrUn 82.474 291 32 8 244 529 290915508 290915784 1.210000e-58 237.0
31 TraesCS6B01G144700 chr2D 85.232 237 22 11 350 582 25325280 25325053 5.650000e-57 231.0
32 TraesCS6B01G144700 chr1A 84.016 244 27 9 346 582 309468156 309468394 9.450000e-55 224.0
33 TraesCS6B01G144700 chr1A 83.562 73 7 4 1992 2062 50962526 50962457 2.180000e-06 63.9
34 TraesCS6B01G144700 chr7A 88.321 137 13 3 244 380 80572614 80572747 7.520000e-36 161.0
35 TraesCS6B01G144700 chr7A 96.154 52 2 0 283 334 608983064 608983013 4.650000e-13 86.1
36 TraesCS6B01G144700 chr7D 85.366 123 13 3 245 366 76561982 76562100 3.550000e-24 122.0
37 TraesCS6B01G144700 chr7D 83.333 126 16 4 1995 2115 74952594 74952719 7.680000e-21 111.0
38 TraesCS6B01G144700 chr7D 96.970 33 1 0 310 342 28909999 28909967 3.650000e-04 56.5
39 TraesCS6B01G144700 chr4D 83.478 115 14 3 432 543 398914781 398914893 4.620000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G144700 chr6B 144370642 144373265 2623 True 4846 4846 100.00000 1 2624 1 chr6B.!!$R1 2623
1 TraesCS6B01G144700 chr6D 69269410 69271068 1658 True 1114 1954 88.32900 839 2552 2 chr6D.!!$R1 1713
2 TraesCS6B01G144700 chr6D 69295906 69299495 3589 True 626 1927 87.78875 580 2604 4 chr6D.!!$R2 2024
3 TraesCS6B01G144700 chr6A 87496439 87497638 1199 True 1875 1875 94.80600 580 1787 1 chr6A.!!$R1 1207
4 TraesCS6B01G144700 chr6A 87310748 87312429 1681 True 529 1210 90.02600 839 2604 3 chr6A.!!$R2 1765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.037734 GAGGACCATTGGTTCCGGTT 59.962 55.0 10.29 0.0 35.25 4.44 F
528 529 0.041926 AAAACTCGTGTAAACGGCGC 60.042 50.0 6.90 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1446 1.376037 CCGGTCTTGTTCTGCTCCC 60.376 63.158 0.0 0.0 0.0 4.30 R
2416 4069 1.878953 CGTGGCTGTGGTAGTTCTTT 58.121 50.000 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.046217 GTCCCGGTTCAAGCCTCC 60.046 66.667 0.00 0.00 0.00 4.30
18 19 2.528127 TCCCGGTTCAAGCCTCCA 60.528 61.111 0.00 0.00 0.00 3.86
19 20 2.150719 TCCCGGTTCAAGCCTCCAA 61.151 57.895 0.00 0.00 0.00 3.53
20 21 1.971695 CCCGGTTCAAGCCTCCAAC 60.972 63.158 0.00 0.00 0.00 3.77
21 22 1.971695 CCGGTTCAAGCCTCCAACC 60.972 63.158 0.00 0.00 36.91 3.77
22 23 3.668386 GGTTCAAGCCTCCAACCG 58.332 61.111 0.00 0.00 30.63 4.44
23 24 1.971695 GGTTCAAGCCTCCAACCGG 60.972 63.158 0.00 0.00 30.63 5.28
24 25 1.971695 GTTCAAGCCTCCAACCGGG 60.972 63.158 6.32 0.00 38.37 5.73
25 26 2.150719 TTCAAGCCTCCAACCGGGA 61.151 57.895 6.32 0.00 45.89 5.14
26 27 2.359975 CAAGCCTCCAACCGGGAC 60.360 66.667 6.32 0.00 42.15 4.46
27 28 3.647771 AAGCCTCCAACCGGGACC 61.648 66.667 6.32 0.00 42.15 4.46
28 29 4.974438 AGCCTCCAACCGGGACCA 62.974 66.667 6.32 0.00 42.15 4.02
29 30 3.961414 GCCTCCAACCGGGACCAA 61.961 66.667 6.32 0.00 42.15 3.67
30 31 3.087065 CCTCCAACCGGGACCAAT 58.913 61.111 6.32 0.00 42.15 3.16
31 32 1.917336 GCCTCCAACCGGGACCAATA 61.917 60.000 6.32 0.00 42.15 1.90
32 33 0.180406 CCTCCAACCGGGACCAATAG 59.820 60.000 6.32 0.00 42.15 1.73
33 34 0.909623 CTCCAACCGGGACCAATAGT 59.090 55.000 6.32 0.00 42.15 2.12
34 35 0.616371 TCCAACCGGGACCAATAGTG 59.384 55.000 6.32 0.00 42.15 2.74
35 36 2.794957 TCCAACCGGGACCAATAGTGG 61.795 57.143 7.88 7.88 42.15 4.00
56 57 3.474570 GCCAGGAGCGAGGACCAT 61.475 66.667 0.00 0.00 0.00 3.55
57 58 3.036429 GCCAGGAGCGAGGACCATT 62.036 63.158 0.00 0.00 0.00 3.16
58 59 1.153289 CCAGGAGCGAGGACCATTG 60.153 63.158 0.00 0.00 0.00 2.82
59 60 1.153289 CAGGAGCGAGGACCATTGG 60.153 63.158 0.00 0.00 0.00 3.16
60 61 1.613630 AGGAGCGAGGACCATTGGT 60.614 57.895 8.42 8.42 39.44 3.67
61 62 1.201429 AGGAGCGAGGACCATTGGTT 61.201 55.000 10.29 0.00 35.25 3.67
62 63 0.744771 GGAGCGAGGACCATTGGTTC 60.745 60.000 10.29 8.09 35.25 3.62
63 64 0.744771 GAGCGAGGACCATTGGTTCC 60.745 60.000 10.29 12.25 35.25 3.62
64 65 2.106683 GCGAGGACCATTGGTTCCG 61.107 63.158 10.29 14.08 35.25 4.30
65 66 1.449601 CGAGGACCATTGGTTCCGG 60.450 63.158 10.29 0.00 35.25 5.14
66 67 1.683441 GAGGACCATTGGTTCCGGT 59.317 57.895 10.29 0.00 35.25 5.28
67 68 0.037734 GAGGACCATTGGTTCCGGTT 59.962 55.000 10.29 0.00 35.25 4.44
68 69 0.037734 AGGACCATTGGTTCCGGTTC 59.962 55.000 10.29 0.00 35.25 3.62
69 70 1.303091 GGACCATTGGTTCCGGTTCG 61.303 60.000 10.29 0.00 35.25 3.95
70 71 0.604511 GACCATTGGTTCCGGTTCGT 60.605 55.000 10.29 0.00 35.25 3.85
71 72 0.604511 ACCATTGGTTCCGGTTCGTC 60.605 55.000 1.37 0.00 27.29 4.20
72 73 1.303091 CCATTGGTTCCGGTTCGTCC 61.303 60.000 0.00 0.00 0.00 4.79
73 74 1.002990 ATTGGTTCCGGTTCGTCCC 60.003 57.895 0.00 0.00 0.00 4.46
74 75 1.770749 ATTGGTTCCGGTTCGTCCCA 61.771 55.000 0.00 0.00 0.00 4.37
75 76 2.357881 GGTTCCGGTTCGTCCCAC 60.358 66.667 0.00 0.00 0.00 4.61
76 77 2.357881 GTTCCGGTTCGTCCCACC 60.358 66.667 0.00 0.00 0.00 4.61
77 78 2.843411 TTCCGGTTCGTCCCACCA 60.843 61.111 0.00 0.00 33.36 4.17
78 79 2.441675 TTCCGGTTCGTCCCACCAA 61.442 57.895 0.00 0.00 33.36 3.67
79 80 2.663423 TTCCGGTTCGTCCCACCAAC 62.663 60.000 0.00 0.00 33.36 3.77
80 81 2.667199 CGGTTCGTCCCACCAACC 60.667 66.667 0.00 0.00 36.91 3.77
81 82 2.667199 GGTTCGTCCCACCAACCG 60.667 66.667 0.00 0.00 34.04 4.44
82 83 2.667199 GTTCGTCCCACCAACCGG 60.667 66.667 0.00 0.00 38.77 5.28
83 84 3.943691 TTCGTCCCACCAACCGGG 61.944 66.667 6.32 0.00 46.03 5.73
89 90 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
90 91 1.455959 CCACCAACCGGGACCAAAA 60.456 57.895 6.32 0.00 41.15 2.44
91 92 1.460273 CCACCAACCGGGACCAAAAG 61.460 60.000 6.32 0.00 41.15 2.27
92 93 1.152631 ACCAACCGGGACCAAAAGG 60.153 57.895 6.32 0.00 41.15 3.11
93 94 1.152631 CCAACCGGGACCAAAAGGT 60.153 57.895 6.32 0.00 40.01 3.50
94 95 1.176619 CCAACCGGGACCAAAAGGTC 61.177 60.000 6.32 6.11 40.01 3.85
102 103 2.249844 GACCAAAAGGTCCAGACGAA 57.750 50.000 3.27 0.00 33.21 3.85
103 104 1.871676 GACCAAAAGGTCCAGACGAAC 59.128 52.381 3.27 0.00 33.21 3.95
104 105 1.235724 CCAAAAGGTCCAGACGAACC 58.764 55.000 0.00 0.00 35.69 3.62
105 106 0.865769 CAAAAGGTCCAGACGAACCG 59.134 55.000 0.00 0.00 40.63 4.44
106 107 0.250166 AAAAGGTCCAGACGAACCGG 60.250 55.000 0.00 0.00 40.63 5.28
107 108 2.108278 AAAGGTCCAGACGAACCGGG 62.108 60.000 6.32 0.00 40.63 5.73
108 109 2.993264 GGTCCAGACGAACCGGGA 60.993 66.667 6.32 0.00 0.00 5.14
109 110 2.260743 GTCCAGACGAACCGGGAC 59.739 66.667 6.32 9.54 42.60 4.46
110 111 2.993264 TCCAGACGAACCGGGACC 60.993 66.667 6.32 0.00 0.00 4.46
111 112 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
112 113 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
113 114 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
114 115 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
115 116 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
116 117 3.131478 CGAACCGGGACCAATGGC 61.131 66.667 6.32 0.00 0.00 4.40
117 118 2.754254 GAACCGGGACCAATGGCC 60.754 66.667 6.32 0.00 0.00 5.36
118 119 4.376170 AACCGGGACCAATGGCCC 62.376 66.667 18.15 18.15 36.26 5.80
122 123 4.360405 GGGACCAATGGCCCACGT 62.360 66.667 21.67 0.00 38.39 4.49
123 124 3.061848 GGACCAATGGCCCACGTG 61.062 66.667 9.08 9.08 0.00 4.49
124 125 3.061848 GACCAATGGCCCACGTGG 61.062 66.667 28.26 28.26 37.09 4.94
151 152 2.511600 CCATCGGGGCTCACGAAC 60.512 66.667 3.66 0.00 44.20 3.95
152 153 2.511600 CATCGGGGCTCACGAACC 60.512 66.667 3.66 0.00 44.20 3.62
153 154 4.143333 ATCGGGGCTCACGAACCG 62.143 66.667 3.66 0.00 44.20 4.44
156 157 4.754667 GGGGCTCACGAACCGGTC 62.755 72.222 8.04 0.00 0.00 4.79
157 158 4.754667 GGGCTCACGAACCGGTCC 62.755 72.222 8.04 1.77 0.00 4.46
158 159 3.998672 GGCTCACGAACCGGTCCA 61.999 66.667 8.04 0.00 0.00 4.02
159 160 2.432628 GCTCACGAACCGGTCCAG 60.433 66.667 8.04 4.77 0.00 3.86
160 161 3.048602 CTCACGAACCGGTCCAGT 58.951 61.111 8.04 5.53 0.00 4.00
161 162 1.372997 CTCACGAACCGGTCCAGTG 60.373 63.158 23.06 23.06 0.00 3.66
162 163 3.041940 CACGAACCGGTCCAGTGC 61.042 66.667 19.35 1.88 0.00 4.40
163 164 4.309950 ACGAACCGGTCCAGTGCC 62.310 66.667 8.04 0.00 0.00 5.01
165 166 4.717313 GAACCGGTCCAGTGCCCC 62.717 72.222 8.04 0.00 0.00 5.80
169 170 4.047125 CGGTCCAGTGCCCCCATT 62.047 66.667 0.00 0.00 0.00 3.16
170 171 2.362889 GGTCCAGTGCCCCCATTG 60.363 66.667 0.00 0.00 0.00 2.82
171 172 2.362889 GTCCAGTGCCCCCATTGG 60.363 66.667 0.00 0.00 46.92 3.16
172 173 2.863484 TCCAGTGCCCCCATTGGT 60.863 61.111 1.20 0.00 45.99 3.67
173 174 2.362889 CCAGTGCCCCCATTGGTC 60.363 66.667 1.20 0.00 42.23 4.02
174 175 2.362889 CAGTGCCCCCATTGGTCC 60.363 66.667 1.20 0.00 0.00 4.46
175 176 3.672503 AGTGCCCCCATTGGTCCC 61.673 66.667 1.20 0.00 0.00 4.46
179 180 3.668142 CCCCCATTGGTCCCGGTT 61.668 66.667 0.00 0.00 0.00 4.44
180 181 2.044352 CCCCATTGGTCCCGGTTC 60.044 66.667 0.00 0.00 0.00 3.62
181 182 2.612493 CCCCATTGGTCCCGGTTCT 61.612 63.158 0.00 0.00 0.00 3.01
182 183 1.378514 CCCATTGGTCCCGGTTCTG 60.379 63.158 0.00 0.00 0.00 3.02
183 184 1.378514 CCATTGGTCCCGGTTCTGG 60.379 63.158 0.00 0.00 0.00 3.86
184 185 1.682849 CATTGGTCCCGGTTCTGGA 59.317 57.895 0.00 0.00 0.00 3.86
189 190 4.631493 TCCCGGTTCTGGACTGAA 57.369 55.556 0.00 0.00 36.72 3.02
190 191 3.082619 TCCCGGTTCTGGACTGAAT 57.917 52.632 0.00 0.00 36.72 2.57
191 192 0.902531 TCCCGGTTCTGGACTGAATC 59.097 55.000 0.00 0.00 36.72 2.52
192 193 0.460284 CCCGGTTCTGGACTGAATCG 60.460 60.000 14.97 14.97 46.47 3.34
193 194 3.050703 CGGTTCTGGACTGAATCGG 57.949 57.895 14.34 0.00 44.12 4.18
194 195 0.460284 CGGTTCTGGACTGAATCGGG 60.460 60.000 14.34 0.00 44.12 5.14
195 196 0.902531 GGTTCTGGACTGAATCGGGA 59.097 55.000 0.00 0.00 0.00 5.14
196 197 1.405661 GGTTCTGGACTGAATCGGGAC 60.406 57.143 0.00 0.00 0.00 4.46
197 198 1.550976 GTTCTGGACTGAATCGGGACT 59.449 52.381 0.00 0.00 0.00 3.85
198 199 2.758979 GTTCTGGACTGAATCGGGACTA 59.241 50.000 0.00 0.00 0.00 2.59
199 200 3.095912 TCTGGACTGAATCGGGACTAA 57.904 47.619 0.00 0.00 0.00 2.24
200 201 3.643237 TCTGGACTGAATCGGGACTAAT 58.357 45.455 0.00 0.00 0.00 1.73
201 202 3.384789 TCTGGACTGAATCGGGACTAATG 59.615 47.826 0.00 0.00 0.00 1.90
202 203 2.434336 TGGACTGAATCGGGACTAATGG 59.566 50.000 0.00 0.00 0.00 3.16
203 204 2.224305 GGACTGAATCGGGACTAATGGG 60.224 54.545 0.00 0.00 0.00 4.00
204 205 1.141053 ACTGAATCGGGACTAATGGGC 59.859 52.381 0.00 0.00 0.00 5.36
205 206 1.417890 CTGAATCGGGACTAATGGGCT 59.582 52.381 0.00 0.00 0.00 5.19
206 207 1.140852 TGAATCGGGACTAATGGGCTG 59.859 52.381 0.00 0.00 0.00 4.85
207 208 0.474184 AATCGGGACTAATGGGCTGG 59.526 55.000 0.00 0.00 0.00 4.85
208 209 2.056906 ATCGGGACTAATGGGCTGGC 62.057 60.000 0.00 0.00 0.00 4.85
209 210 2.195956 GGGACTAATGGGCTGGCC 59.804 66.667 14.23 14.23 0.00 5.36
223 224 4.785575 GGCCCTGCCTAAACCATT 57.214 55.556 0.00 0.00 46.69 3.16
224 225 2.201927 GGCCCTGCCTAAACCATTG 58.798 57.895 0.00 0.00 46.69 2.82
225 226 1.517361 GCCCTGCCTAAACCATTGC 59.483 57.895 0.00 0.00 0.00 3.56
226 227 1.960040 GCCCTGCCTAAACCATTGCC 61.960 60.000 0.00 0.00 0.00 4.52
227 228 1.329913 CCCTGCCTAAACCATTGCCC 61.330 60.000 0.00 0.00 0.00 5.36
228 229 1.329913 CCTGCCTAAACCATTGCCCC 61.330 60.000 0.00 0.00 0.00 5.80
229 230 1.305718 TGCCTAAACCATTGCCCCC 60.306 57.895 0.00 0.00 0.00 5.40
230 231 1.001631 GCCTAAACCATTGCCCCCT 59.998 57.895 0.00 0.00 0.00 4.79
231 232 0.617535 GCCTAAACCATTGCCCCCTT 60.618 55.000 0.00 0.00 0.00 3.95
232 233 1.951209 CCTAAACCATTGCCCCCTTT 58.049 50.000 0.00 0.00 0.00 3.11
233 234 2.265367 CCTAAACCATTGCCCCCTTTT 58.735 47.619 0.00 0.00 0.00 2.27
234 235 2.642311 CCTAAACCATTGCCCCCTTTTT 59.358 45.455 0.00 0.00 0.00 1.94
254 255 6.442541 TTTTTACTAGTGGGAGGACATCAA 57.557 37.500 5.39 0.00 0.00 2.57
255 256 5.416271 TTTACTAGTGGGAGGACATCAAC 57.584 43.478 5.39 0.00 0.00 3.18
256 257 2.902608 ACTAGTGGGAGGACATCAACA 58.097 47.619 0.00 0.00 0.00 3.33
257 258 3.248024 ACTAGTGGGAGGACATCAACAA 58.752 45.455 0.00 0.00 0.00 2.83
258 259 2.867109 AGTGGGAGGACATCAACAAG 57.133 50.000 0.00 0.00 0.00 3.16
259 260 1.352352 AGTGGGAGGACATCAACAAGG 59.648 52.381 0.00 0.00 0.00 3.61
260 261 1.073923 GTGGGAGGACATCAACAAGGT 59.926 52.381 0.00 0.00 0.00 3.50
261 262 1.073763 TGGGAGGACATCAACAAGGTG 59.926 52.381 0.00 0.00 0.00 4.00
262 263 1.614317 GGGAGGACATCAACAAGGTGG 60.614 57.143 0.00 0.00 0.00 4.61
263 264 1.351017 GGAGGACATCAACAAGGTGGA 59.649 52.381 0.00 0.00 0.00 4.02
264 265 2.616510 GGAGGACATCAACAAGGTGGAG 60.617 54.545 0.00 0.00 0.00 3.86
265 266 2.039084 GAGGACATCAACAAGGTGGAGT 59.961 50.000 0.00 0.00 0.00 3.85
266 267 2.039084 AGGACATCAACAAGGTGGAGTC 59.961 50.000 3.36 3.36 0.00 3.36
267 268 2.427506 GACATCAACAAGGTGGAGTCC 58.572 52.381 0.73 0.73 0.00 3.85
268 269 1.270839 ACATCAACAAGGTGGAGTCCG 60.271 52.381 4.30 0.00 0.00 4.79
269 270 1.001974 CATCAACAAGGTGGAGTCCGA 59.998 52.381 4.30 0.00 0.00 4.55
270 271 0.679505 TCAACAAGGTGGAGTCCGAG 59.320 55.000 4.30 0.00 0.00 4.63
271 272 0.393077 CAACAAGGTGGAGTCCGAGT 59.607 55.000 4.30 0.00 0.00 4.18
272 273 0.680061 AACAAGGTGGAGTCCGAGTC 59.320 55.000 4.30 0.00 0.00 3.36
273 274 1.213013 CAAGGTGGAGTCCGAGTCG 59.787 63.158 5.29 5.29 0.00 4.18
284 285 3.125573 CGAGTCGGAGGAGTGCGA 61.126 66.667 4.10 0.00 45.24 5.10
288 289 3.514417 TCGGAGGAGTGCGATGAG 58.486 61.111 0.00 0.00 42.22 2.90
289 290 1.378646 TCGGAGGAGTGCGATGAGT 60.379 57.895 0.00 0.00 42.22 3.41
290 291 0.107361 TCGGAGGAGTGCGATGAGTA 60.107 55.000 0.00 0.00 42.22 2.59
291 292 0.309302 CGGAGGAGTGCGATGAGTAG 59.691 60.000 0.00 0.00 40.58 2.57
292 293 1.394618 GGAGGAGTGCGATGAGTAGT 58.605 55.000 0.00 0.00 0.00 2.73
293 294 1.751924 GGAGGAGTGCGATGAGTAGTT 59.248 52.381 0.00 0.00 0.00 2.24
294 295 2.166664 GGAGGAGTGCGATGAGTAGTTT 59.833 50.000 0.00 0.00 0.00 2.66
295 296 3.368531 GGAGGAGTGCGATGAGTAGTTTT 60.369 47.826 0.00 0.00 0.00 2.43
296 297 4.246458 GAGGAGTGCGATGAGTAGTTTTT 58.754 43.478 0.00 0.00 0.00 1.94
324 325 8.037382 TCTATCGTTTTATGTATCGTAGGAGG 57.963 38.462 0.00 0.00 0.00 4.30
325 326 6.889301 ATCGTTTTATGTATCGTAGGAGGA 57.111 37.500 0.00 0.00 0.00 3.71
326 327 6.309712 TCGTTTTATGTATCGTAGGAGGAG 57.690 41.667 0.00 0.00 0.00 3.69
327 328 5.240183 TCGTTTTATGTATCGTAGGAGGAGG 59.760 44.000 0.00 0.00 0.00 4.30
328 329 5.228665 GTTTTATGTATCGTAGGAGGAGGC 58.771 45.833 0.00 0.00 0.00 4.70
329 330 2.982339 ATGTATCGTAGGAGGAGGCT 57.018 50.000 0.00 0.00 0.00 4.58
330 331 5.509832 TTATGTATCGTAGGAGGAGGCTA 57.490 43.478 0.00 0.00 0.00 3.93
331 332 4.594675 ATGTATCGTAGGAGGAGGCTAT 57.405 45.455 0.00 0.00 0.00 2.97
332 333 3.687125 TGTATCGTAGGAGGAGGCTATG 58.313 50.000 0.00 0.00 0.00 2.23
333 334 3.329814 TGTATCGTAGGAGGAGGCTATGA 59.670 47.826 0.00 0.00 0.00 2.15
334 335 3.527507 ATCGTAGGAGGAGGCTATGAA 57.472 47.619 0.00 0.00 0.00 2.57
335 336 2.584236 TCGTAGGAGGAGGCTATGAAC 58.416 52.381 0.00 0.00 0.00 3.18
336 337 2.175069 TCGTAGGAGGAGGCTATGAACT 59.825 50.000 0.00 0.00 0.00 3.01
337 338 2.959707 CGTAGGAGGAGGCTATGAACTT 59.040 50.000 0.00 0.00 0.00 2.66
338 339 3.385111 CGTAGGAGGAGGCTATGAACTTT 59.615 47.826 0.00 0.00 0.00 2.66
339 340 4.500035 CGTAGGAGGAGGCTATGAACTTTC 60.500 50.000 0.00 0.00 0.00 2.62
340 341 3.730269 AGGAGGAGGCTATGAACTTTCT 58.270 45.455 0.00 0.00 0.00 2.52
341 342 4.884961 AGGAGGAGGCTATGAACTTTCTA 58.115 43.478 0.00 0.00 0.00 2.10
342 343 4.651962 AGGAGGAGGCTATGAACTTTCTAC 59.348 45.833 0.00 0.00 0.00 2.59
343 344 4.406003 GGAGGAGGCTATGAACTTTCTACA 59.594 45.833 0.00 0.00 0.00 2.74
344 345 5.346181 AGGAGGCTATGAACTTTCTACAC 57.654 43.478 0.00 0.00 0.00 2.90
345 346 4.777896 AGGAGGCTATGAACTTTCTACACA 59.222 41.667 0.00 0.00 0.00 3.72
346 347 4.870991 GGAGGCTATGAACTTTCTACACAC 59.129 45.833 0.00 0.00 0.00 3.82
347 348 5.337652 GGAGGCTATGAACTTTCTACACACT 60.338 44.000 0.00 0.00 0.00 3.55
348 349 5.482908 AGGCTATGAACTTTCTACACACTG 58.517 41.667 0.00 0.00 0.00 3.66
349 350 5.012148 AGGCTATGAACTTTCTACACACTGT 59.988 40.000 0.00 0.00 0.00 3.55
350 351 5.348997 GGCTATGAACTTTCTACACACTGTC 59.651 44.000 0.00 0.00 0.00 3.51
351 352 6.159988 GCTATGAACTTTCTACACACTGTCT 58.840 40.000 0.00 0.00 0.00 3.41
352 353 7.313646 GCTATGAACTTTCTACACACTGTCTA 58.686 38.462 0.00 0.00 0.00 2.59
353 354 7.976734 GCTATGAACTTTCTACACACTGTCTAT 59.023 37.037 0.00 0.00 0.00 1.98
354 355 9.295214 CTATGAACTTTCTACACACTGTCTATG 57.705 37.037 0.00 0.00 0.00 2.23
355 356 7.050970 TGAACTTTCTACACACTGTCTATGT 57.949 36.000 0.00 0.00 0.00 2.29
356 357 8.173542 TGAACTTTCTACACACTGTCTATGTA 57.826 34.615 0.00 0.00 0.00 2.29
357 358 8.803235 TGAACTTTCTACACACTGTCTATGTAT 58.197 33.333 0.00 0.00 0.00 2.29
358 359 9.291664 GAACTTTCTACACACTGTCTATGTATC 57.708 37.037 0.00 0.00 0.00 2.24
359 360 7.473366 ACTTTCTACACACTGTCTATGTATCG 58.527 38.462 0.00 0.00 0.00 2.92
360 361 6.997239 TTCTACACACTGTCTATGTATCGT 57.003 37.500 0.00 0.00 0.00 3.73
361 362 6.997239 TCTACACACTGTCTATGTATCGTT 57.003 37.500 0.00 0.00 0.00 3.85
362 363 7.387119 TCTACACACTGTCTATGTATCGTTT 57.613 36.000 0.00 0.00 0.00 3.60
363 364 7.823665 TCTACACACTGTCTATGTATCGTTTT 58.176 34.615 0.00 0.00 0.00 2.43
364 365 8.301720 TCTACACACTGTCTATGTATCGTTTTT 58.698 33.333 0.00 0.00 0.00 1.94
399 400 9.905713 TCTATTTGTTTTGATCTACTTATGCCT 57.094 29.630 0.00 0.00 0.00 4.75
411 412 9.885934 GATCTACTTATGCCTATATGTGTATCG 57.114 37.037 0.00 0.00 31.74 2.92
412 413 9.628500 ATCTACTTATGCCTATATGTGTATCGA 57.372 33.333 0.00 0.00 31.74 3.59
413 414 9.110502 TCTACTTATGCCTATATGTGTATCGAG 57.889 37.037 0.00 0.00 31.74 4.04
414 415 7.704578 ACTTATGCCTATATGTGTATCGAGT 57.295 36.000 0.00 0.00 0.00 4.18
415 416 7.763356 ACTTATGCCTATATGTGTATCGAGTC 58.237 38.462 0.00 0.00 0.00 3.36
416 417 4.680171 TGCCTATATGTGTATCGAGTCG 57.320 45.455 6.09 6.09 0.00 4.18
417 418 4.070009 TGCCTATATGTGTATCGAGTCGT 58.930 43.478 13.12 2.64 0.00 4.34
418 419 5.240121 TGCCTATATGTGTATCGAGTCGTA 58.760 41.667 13.12 1.63 0.00 3.43
419 420 5.350640 TGCCTATATGTGTATCGAGTCGTAG 59.649 44.000 13.12 3.43 0.00 3.51
420 421 5.350914 GCCTATATGTGTATCGAGTCGTAGT 59.649 44.000 13.12 2.89 0.00 2.73
421 422 6.533012 GCCTATATGTGTATCGAGTCGTAGTA 59.467 42.308 13.12 1.91 0.00 1.82
422 423 7.224362 GCCTATATGTGTATCGAGTCGTAGTAT 59.776 40.741 13.12 0.79 0.00 2.12
423 424 9.741647 CCTATATGTGTATCGAGTCGTAGTATA 57.258 37.037 13.12 0.00 0.00 1.47
447 448 4.910746 AAAATATATAGCGCGTCTGCTG 57.089 40.909 8.43 0.00 46.70 4.41
448 449 2.568696 ATATATAGCGCGTCTGCTGG 57.431 50.000 8.43 0.00 46.70 4.85
449 450 1.530323 TATATAGCGCGTCTGCTGGA 58.470 50.000 8.43 0.00 46.70 3.86
450 451 0.242286 ATATAGCGCGTCTGCTGGAG 59.758 55.000 8.43 0.00 46.70 3.86
451 452 2.407846 TATAGCGCGTCTGCTGGAGC 62.408 60.000 8.43 0.00 46.70 4.70
456 457 4.749310 CGTCTGCTGGAGCGGCTT 62.749 66.667 2.97 0.00 46.62 4.35
457 458 3.123620 GTCTGCTGGAGCGGCTTG 61.124 66.667 2.97 0.00 46.62 4.01
474 475 3.013439 GCGCGCGCTCTATTTTGC 61.013 61.111 44.38 18.46 38.26 3.68
475 476 2.399217 CGCGCGCTCTATTTTGCA 59.601 55.556 30.48 0.00 0.00 4.08
476 477 1.649348 CGCGCGCTCTATTTTGCAG 60.649 57.895 30.48 4.48 0.00 4.41
477 478 1.936398 GCGCGCTCTATTTTGCAGC 60.936 57.895 26.67 0.00 0.00 5.25
483 484 1.003438 GCTCTATTTTGCAGCGGTAGC 60.003 52.381 0.00 0.00 45.58 3.58
517 518 4.659874 CGGCGCGCAAAAACTCGT 62.660 61.111 34.42 0.00 0.00 4.18
518 519 3.091022 GGCGCGCAAAAACTCGTG 61.091 61.111 34.42 0.00 39.00 4.35
519 520 2.351888 GCGCGCAAAAACTCGTGT 60.352 55.556 29.10 0.00 38.34 4.49
520 521 1.083273 GCGCGCAAAAACTCGTGTA 60.083 52.632 29.10 0.00 38.34 2.90
521 522 0.655048 GCGCGCAAAAACTCGTGTAA 60.655 50.000 29.10 0.00 38.34 2.41
522 523 1.732528 CGCGCAAAAACTCGTGTAAA 58.267 45.000 8.75 0.00 0.00 2.01
523 524 1.441725 CGCGCAAAAACTCGTGTAAAC 59.558 47.619 8.75 0.00 0.00 2.01
524 525 1.441725 GCGCAAAAACTCGTGTAAACG 59.558 47.619 0.30 0.00 0.00 3.60
525 526 2.031232 CGCAAAAACTCGTGTAAACGG 58.969 47.619 5.43 0.00 0.00 4.44
526 527 1.776897 GCAAAAACTCGTGTAAACGGC 59.223 47.619 5.43 0.00 0.00 5.68
527 528 2.031232 CAAAAACTCGTGTAAACGGCG 58.969 47.619 4.80 4.80 0.00 6.46
528 529 0.041926 AAAACTCGTGTAAACGGCGC 60.042 50.000 6.90 0.00 0.00 6.53
529 530 0.877213 AAACTCGTGTAAACGGCGCT 60.877 50.000 6.90 0.00 0.00 5.92
530 531 1.554042 AACTCGTGTAAACGGCGCTG 61.554 55.000 16.39 16.39 0.00 5.18
531 532 2.019951 CTCGTGTAAACGGCGCTGT 61.020 57.895 18.16 18.16 0.00 4.40
532 533 0.730155 CTCGTGTAAACGGCGCTGTA 60.730 55.000 24.63 4.69 0.00 2.74
533 534 0.318529 TCGTGTAAACGGCGCTGTAA 60.319 50.000 24.63 11.52 0.00 2.41
534 535 0.507785 CGTGTAAACGGCGCTGTAAA 59.492 50.000 24.63 11.11 0.00 2.01
535 536 1.719295 CGTGTAAACGGCGCTGTAAAC 60.719 52.381 24.63 22.53 0.00 2.01
536 537 0.507785 TGTAAACGGCGCTGTAAACG 59.492 50.000 24.63 11.46 0.00 3.60
537 538 0.508213 GTAAACGGCGCTGTAAACGT 59.492 50.000 24.63 12.21 41.88 3.99
538 539 3.721851 AACGGCGCTGTAAACGTT 58.278 50.000 24.63 17.91 43.74 3.99
539 540 2.016171 AACGGCGCTGTAAACGTTT 58.984 47.368 24.63 18.90 45.97 3.60
540 541 0.377905 AACGGCGCTGTAAACGTTTT 59.622 45.000 24.63 0.18 45.97 2.43
541 542 0.377905 ACGGCGCTGTAAACGTTTTT 59.622 45.000 22.96 0.00 35.90 1.94
573 574 3.276091 CGTTGCACGCCTGTTGGA 61.276 61.111 0.00 0.00 33.65 3.53
574 575 2.331451 GTTGCACGCCTGTTGGAC 59.669 61.111 0.00 0.00 34.57 4.02
575 576 2.124529 TTGCACGCCTGTTGGACA 60.125 55.556 0.00 0.00 34.57 4.02
576 577 1.528076 TTGCACGCCTGTTGGACAT 60.528 52.632 0.00 0.00 34.57 3.06
577 578 1.794151 TTGCACGCCTGTTGGACATG 61.794 55.000 0.00 0.00 34.57 3.21
578 579 2.562912 CACGCCTGTTGGACATGC 59.437 61.111 0.00 0.00 36.57 4.06
586 587 2.344950 CTGTTGGACATGCTCTCAGAC 58.655 52.381 0.00 0.00 0.00 3.51
596 597 6.128282 GGACATGCTCTCAGACGAAAATTTTA 60.128 38.462 2.75 0.00 0.00 1.52
703 704 6.320418 CCCATCCAACCTGTTAAACTATAACC 59.680 42.308 0.00 0.00 0.00 2.85
830 836 6.896021 TCCGGATAAAATACTGAGACTAGG 57.104 41.667 0.00 0.00 0.00 3.02
831 837 5.243283 TCCGGATAAAATACTGAGACTAGGC 59.757 44.000 0.00 0.00 0.00 3.93
837 847 3.810721 ATACTGAGACTAGGCGGGTAT 57.189 47.619 0.00 0.17 0.00 2.73
855 865 5.310451 GGGTATGAACAAAGACCACAACTA 58.690 41.667 0.00 0.00 33.33 2.24
897 907 3.517901 CAGTCCATAAGTACCCCACTCAA 59.482 47.826 0.00 0.00 36.04 3.02
898 908 3.775316 AGTCCATAAGTACCCCACTCAAG 59.225 47.826 0.00 0.00 36.04 3.02
899 909 3.773119 GTCCATAAGTACCCCACTCAAGA 59.227 47.826 0.00 0.00 36.04 3.02
900 910 3.773119 TCCATAAGTACCCCACTCAAGAC 59.227 47.826 0.00 0.00 36.04 3.01
901 911 3.118371 CCATAAGTACCCCACTCAAGACC 60.118 52.174 0.00 0.00 36.04 3.85
959 969 3.015145 ACCCTCCCCCATCCAACG 61.015 66.667 0.00 0.00 0.00 4.10
993 1012 5.012239 CCAAGATCTGAATCAAGAAACCCA 58.988 41.667 0.00 0.00 34.07 4.51
1209 1228 1.313812 CGCTCGGGTACAACCTCTCT 61.314 60.000 0.00 0.00 38.64 3.10
1521 1540 1.600916 GAAGAACAAGCTGGCGGGT 60.601 57.895 0.00 0.00 0.00 5.28
1553 1572 2.180518 GCTGAAGCTCGACTCGCT 59.819 61.111 0.00 0.00 39.94 4.93
1638 1657 6.819146 ACAAGGAGTAGTTAATTTGCTAGCTC 59.181 38.462 17.23 0.00 0.00 4.09
1641 1663 6.157123 AGGAGTAGTTAATTTGCTAGCTCCTT 59.843 38.462 17.23 8.66 39.68 3.36
1684 1706 4.463891 CCAAAGTTCCAAGCAATCTATGGT 59.536 41.667 0.00 0.00 42.88 3.55
1733 1755 8.790718 TCGAGTAGTTGTAGTACTTCTCAATTT 58.209 33.333 0.00 1.65 40.53 1.82
1763 1785 9.910267 TTATTCCTTCCTTACCCTTATGTAAAC 57.090 33.333 0.00 0.00 30.74 2.01
1765 1787 7.519347 TCCTTCCTTACCCTTATGTAAACAT 57.481 36.000 0.63 0.63 40.22 2.71
1948 2102 9.897744 GAAATATTGAAATGAGTGAACAGACAA 57.102 29.630 0.00 0.00 0.00 3.18
2062 2220 7.719483 ACAGACTGAAATGAATGAACAAACAT 58.281 30.769 10.08 0.00 0.00 2.71
2094 2254 9.081204 AGCATGCCTATATACATTTGATTTTGA 57.919 29.630 15.66 0.00 0.00 2.69
2125 2285 5.957842 AGGACATCTTATTTTTGCGAACA 57.042 34.783 0.00 0.00 0.00 3.18
2241 2401 9.613428 TTGACATCGAATAAATCTAACATTCCT 57.387 29.630 0.00 0.00 0.00 3.36
2242 2402 9.261180 TGACATCGAATAAATCTAACATTCCTC 57.739 33.333 0.00 0.00 0.00 3.71
2243 2403 8.608844 ACATCGAATAAATCTAACATTCCTCC 57.391 34.615 0.00 0.00 0.00 4.30
2245 2405 6.220930 TCGAATAAATCTAACATTCCTCCCG 58.779 40.000 0.00 0.00 0.00 5.14
2247 2407 3.644966 AAATCTAACATTCCTCCCGCA 57.355 42.857 0.00 0.00 0.00 5.69
2248 2408 3.644966 AATCTAACATTCCTCCCGCAA 57.355 42.857 0.00 0.00 0.00 4.85
2250 2410 3.426787 TCTAACATTCCTCCCGCAAAA 57.573 42.857 0.00 0.00 0.00 2.44
2327 2487 0.456482 TATGCACGGTGGTTCGTACG 60.456 55.000 9.53 9.53 41.86 3.67
2368 2528 2.338620 CGTCGTCCCAGCTTGTCA 59.661 61.111 0.00 0.00 0.00 3.58
2369 2529 1.079819 CGTCGTCCCAGCTTGTCAT 60.080 57.895 0.00 0.00 0.00 3.06
2373 4026 1.885871 GTCCCAGCTTGTCATTGGC 59.114 57.895 0.00 0.00 0.00 4.52
2385 4038 2.295885 GTCATTGGCAAGAGCTAGCAT 58.704 47.619 18.83 1.39 41.70 3.79
2397 4050 2.840199 CTAGCATAGCCCTCCCACA 58.160 57.895 0.00 0.00 0.00 4.17
2522 4182 1.757118 TCTTTATCACCAGCTCTCCCG 59.243 52.381 0.00 0.00 0.00 5.14
2552 4214 2.949106 CACTCTGGCGTTTGGCTG 59.051 61.111 0.00 0.00 42.94 4.85
2553 4215 2.980233 ACTCTGGCGTTTGGCTGC 60.980 61.111 0.00 0.00 42.94 5.25
2559 4221 2.671619 GCGTTTGGCTGCTACCCA 60.672 61.111 0.00 0.00 39.11 4.51
2564 4257 0.830023 TTTGGCTGCTACCCAAACCC 60.830 55.000 10.58 0.00 44.90 4.11
2609 4302 2.352915 CGCAGGTTTCGCGCAAAA 60.353 55.556 8.75 0.00 46.98 2.44
2610 4303 1.941734 CGCAGGTTTCGCGCAAAAA 60.942 52.632 8.75 4.30 46.98 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.046217 GGAGGCTTGAACCGGGAC 60.046 66.667 6.32 0.00 33.69 4.46
1 2 2.150719 TTGGAGGCTTGAACCGGGA 61.151 57.895 6.32 0.00 33.69 5.14
2 3 1.971695 GTTGGAGGCTTGAACCGGG 60.972 63.158 6.32 0.00 33.69 5.73
3 4 1.971695 GGTTGGAGGCTTGAACCGG 60.972 63.158 11.53 0.00 30.33 5.28
4 5 3.668386 GGTTGGAGGCTTGAACCG 58.332 61.111 11.53 0.00 30.33 4.44
5 6 1.971695 CCGGTTGGAGGCTTGAACC 60.972 63.158 15.31 15.31 37.49 3.62
6 7 1.971695 CCCGGTTGGAGGCTTGAAC 60.972 63.158 0.00 0.00 37.49 3.18
7 8 2.150719 TCCCGGTTGGAGGCTTGAA 61.151 57.895 0.00 0.00 38.61 2.69
8 9 2.528127 TCCCGGTTGGAGGCTTGA 60.528 61.111 0.00 0.00 38.61 3.02
9 10 2.359975 GTCCCGGTTGGAGGCTTG 60.360 66.667 0.00 0.00 46.38 4.01
10 11 3.647771 GGTCCCGGTTGGAGGCTT 61.648 66.667 0.00 0.00 46.38 4.35
11 12 4.974438 TGGTCCCGGTTGGAGGCT 62.974 66.667 0.00 0.00 46.38 4.58
12 13 1.917336 TATTGGTCCCGGTTGGAGGC 61.917 60.000 0.00 0.00 46.38 4.70
13 14 0.180406 CTATTGGTCCCGGTTGGAGG 59.820 60.000 0.00 0.00 46.38 4.30
14 15 0.909623 ACTATTGGTCCCGGTTGGAG 59.090 55.000 0.00 0.00 46.38 3.86
15 16 0.616371 CACTATTGGTCCCGGTTGGA 59.384 55.000 0.00 0.00 42.41 3.53
16 17 0.393808 CCACTATTGGTCCCGGTTGG 60.394 60.000 0.00 0.00 38.23 3.77
17 18 3.168773 CCACTATTGGTCCCGGTTG 57.831 57.895 0.00 0.00 38.23 3.77
27 28 0.107017 CTCCTGGCCCACCACTATTG 60.107 60.000 0.00 0.00 42.67 1.90
28 29 1.926426 GCTCCTGGCCCACCACTATT 61.926 60.000 0.00 0.00 42.67 1.73
29 30 2.378634 GCTCCTGGCCCACCACTAT 61.379 63.158 0.00 0.00 42.67 2.12
30 31 3.009115 GCTCCTGGCCCACCACTA 61.009 66.667 0.00 0.00 42.67 2.74
39 40 3.036429 AATGGTCCTCGCTCCTGGC 62.036 63.158 0.00 0.00 37.64 4.85
40 41 1.153289 CAATGGTCCTCGCTCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
41 42 1.153289 CCAATGGTCCTCGCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
42 43 1.201429 AACCAATGGTCCTCGCTCCT 61.201 55.000 4.95 0.00 33.12 3.69
43 44 0.744771 GAACCAATGGTCCTCGCTCC 60.745 60.000 4.95 0.00 33.12 4.70
44 45 0.744771 GGAACCAATGGTCCTCGCTC 60.745 60.000 4.95 0.00 33.12 5.03
45 46 1.299976 GGAACCAATGGTCCTCGCT 59.700 57.895 4.95 0.00 33.12 4.93
46 47 2.106683 CGGAACCAATGGTCCTCGC 61.107 63.158 4.95 0.00 33.12 5.03
47 48 1.449601 CCGGAACCAATGGTCCTCG 60.450 63.158 4.95 9.99 33.12 4.63
48 49 0.037734 AACCGGAACCAATGGTCCTC 59.962 55.000 9.46 0.00 33.12 3.71
49 50 0.037734 GAACCGGAACCAATGGTCCT 59.962 55.000 9.46 0.00 33.12 3.85
50 51 1.303091 CGAACCGGAACCAATGGTCC 61.303 60.000 9.46 8.08 33.12 4.46
51 52 0.604511 ACGAACCGGAACCAATGGTC 60.605 55.000 9.46 0.00 33.12 4.02
52 53 0.604511 GACGAACCGGAACCAATGGT 60.605 55.000 9.46 0.00 37.65 3.55
53 54 1.303091 GGACGAACCGGAACCAATGG 61.303 60.000 9.46 0.00 0.00 3.16
54 55 1.303091 GGGACGAACCGGAACCAATG 61.303 60.000 9.46 0.00 40.11 2.82
55 56 1.002990 GGGACGAACCGGAACCAAT 60.003 57.895 9.46 0.00 40.11 3.16
56 57 2.426887 GGGACGAACCGGAACCAA 59.573 61.111 9.46 0.00 40.11 3.67
57 58 2.843411 TGGGACGAACCGGAACCA 60.843 61.111 9.46 3.79 40.11 3.67
58 59 2.357881 GTGGGACGAACCGGAACC 60.358 66.667 9.46 3.40 40.11 3.62
59 60 2.357881 GGTGGGACGAACCGGAAC 60.358 66.667 9.46 0.00 40.11 3.62
60 61 2.441675 TTGGTGGGACGAACCGGAA 61.442 57.895 9.46 0.00 40.86 4.30
61 62 2.843411 TTGGTGGGACGAACCGGA 60.843 61.111 9.46 0.00 40.86 5.14
62 63 2.667199 GTTGGTGGGACGAACCGG 60.667 66.667 0.00 0.00 40.86 5.28
63 64 2.667199 GGTTGGTGGGACGAACCG 60.667 66.667 5.08 0.00 44.79 4.44
65 66 2.667199 CCGGTTGGTGGGACGAAC 60.667 66.667 0.00 0.00 36.30 3.95
72 73 1.455959 TTTTGGTCCCGGTTGGTGG 60.456 57.895 0.00 0.00 34.77 4.61
73 74 1.460273 CCTTTTGGTCCCGGTTGGTG 61.460 60.000 0.00 0.00 34.77 4.17
74 75 1.152631 CCTTTTGGTCCCGGTTGGT 60.153 57.895 0.00 0.00 34.77 3.67
75 76 3.771978 CCTTTTGGTCCCGGTTGG 58.228 61.111 0.00 0.00 34.07 3.77
86 87 0.865769 CGGTTCGTCTGGACCTTTTG 59.134 55.000 0.00 0.00 0.00 2.44
87 88 0.250166 CCGGTTCGTCTGGACCTTTT 60.250 55.000 0.00 0.00 45.09 2.27
88 89 1.370064 CCGGTTCGTCTGGACCTTT 59.630 57.895 0.00 0.00 45.09 3.11
89 90 2.580601 CCCGGTTCGTCTGGACCTT 61.581 63.158 0.00 0.00 45.09 3.50
90 91 2.995574 CCCGGTTCGTCTGGACCT 60.996 66.667 0.00 0.00 45.09 3.85
91 92 2.993264 TCCCGGTTCGTCTGGACC 60.993 66.667 0.00 0.00 45.09 4.46
92 93 2.260743 GTCCCGGTTCGTCTGGAC 59.739 66.667 0.00 0.00 45.09 4.02
93 94 2.993264 GGTCCCGGTTCGTCTGGA 60.993 66.667 0.00 0.00 45.09 3.86
94 95 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
95 96 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
96 97 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
97 98 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
98 99 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
99 100 3.131478 GCCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
100 101 2.754254 GGCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
101 102 4.376170 GGGCCATTGGTCCCGGTT 62.376 66.667 15.98 0.00 42.67 4.44
107 108 3.061848 CCACGTGGGCCATTGGTC 61.062 66.667 27.57 0.54 0.00 4.02
134 135 2.511600 GTTCGTGAGCCCCGATGG 60.512 66.667 0.00 0.00 33.81 3.51
135 136 2.511600 GGTTCGTGAGCCCCGATG 60.512 66.667 0.00 0.00 33.81 3.84
136 137 4.143333 CGGTTCGTGAGCCCCGAT 62.143 66.667 0.00 0.00 43.68 4.18
139 140 4.754667 GACCGGTTCGTGAGCCCC 62.755 72.222 9.42 0.00 0.00 5.80
140 141 4.754667 GGACCGGTTCGTGAGCCC 62.755 72.222 9.42 0.00 0.00 5.19
141 142 3.934391 CTGGACCGGTTCGTGAGCC 62.934 68.421 9.42 3.43 0.00 4.70
142 143 2.432628 CTGGACCGGTTCGTGAGC 60.433 66.667 9.42 0.00 0.00 4.26
143 144 1.372997 CACTGGACCGGTTCGTGAG 60.373 63.158 24.76 13.29 0.00 3.51
144 145 2.732016 CACTGGACCGGTTCGTGA 59.268 61.111 24.76 1.88 0.00 4.35
145 146 3.041940 GCACTGGACCGGTTCGTG 61.042 66.667 24.71 24.71 0.00 4.35
146 147 4.309950 GGCACTGGACCGGTTCGT 62.310 66.667 9.42 6.54 0.00 3.85
148 149 4.717313 GGGGCACTGGACCGGTTC 62.717 72.222 9.42 7.49 46.61 3.62
152 153 4.047125 AATGGGGGCACTGGACCG 62.047 66.667 0.00 0.00 46.61 4.79
153 154 2.362889 CAATGGGGGCACTGGACC 60.363 66.667 0.00 0.00 43.93 4.46
154 155 2.362889 CCAATGGGGGCACTGGAC 60.363 66.667 0.00 0.00 0.00 4.02
155 156 2.863484 ACCAATGGGGGCACTGGA 60.863 61.111 3.55 0.00 42.91 3.86
162 163 3.655350 GAACCGGGACCAATGGGGG 62.655 68.421 6.32 1.69 42.91 5.40
163 164 2.044352 GAACCGGGACCAATGGGG 60.044 66.667 6.32 0.00 44.81 4.96
164 165 1.378514 CAGAACCGGGACCAATGGG 60.379 63.158 6.32 0.00 41.29 4.00
165 166 1.378514 CCAGAACCGGGACCAATGG 60.379 63.158 6.32 0.00 0.00 3.16
166 167 1.682849 TCCAGAACCGGGACCAATG 59.317 57.895 6.32 0.00 0.00 2.82
167 168 4.243550 TCCAGAACCGGGACCAAT 57.756 55.556 6.32 0.00 0.00 3.16
172 173 0.902531 GATTCAGTCCAGAACCGGGA 59.097 55.000 6.32 0.00 0.00 5.14
173 174 0.460284 CGATTCAGTCCAGAACCGGG 60.460 60.000 6.32 0.00 30.89 5.73
174 175 3.050703 CGATTCAGTCCAGAACCGG 57.949 57.895 0.00 0.00 30.89 5.28
175 176 0.460284 CCCGATTCAGTCCAGAACCG 60.460 60.000 0.00 0.00 34.31 4.44
176 177 0.902531 TCCCGATTCAGTCCAGAACC 59.097 55.000 0.00 0.00 0.00 3.62
177 178 1.550976 AGTCCCGATTCAGTCCAGAAC 59.449 52.381 0.00 0.00 0.00 3.01
178 179 1.938585 AGTCCCGATTCAGTCCAGAA 58.061 50.000 0.00 0.00 0.00 3.02
179 180 2.820728 TAGTCCCGATTCAGTCCAGA 57.179 50.000 0.00 0.00 0.00 3.86
180 181 3.493350 CCATTAGTCCCGATTCAGTCCAG 60.493 52.174 0.00 0.00 0.00 3.86
181 182 2.434336 CCATTAGTCCCGATTCAGTCCA 59.566 50.000 0.00 0.00 0.00 4.02
182 183 2.224305 CCCATTAGTCCCGATTCAGTCC 60.224 54.545 0.00 0.00 0.00 3.85
183 184 2.807108 GCCCATTAGTCCCGATTCAGTC 60.807 54.545 0.00 0.00 0.00 3.51
184 185 1.141053 GCCCATTAGTCCCGATTCAGT 59.859 52.381 0.00 0.00 0.00 3.41
185 186 1.417890 AGCCCATTAGTCCCGATTCAG 59.582 52.381 0.00 0.00 0.00 3.02
186 187 1.140852 CAGCCCATTAGTCCCGATTCA 59.859 52.381 0.00 0.00 0.00 2.57
187 188 1.543429 CCAGCCCATTAGTCCCGATTC 60.543 57.143 0.00 0.00 0.00 2.52
188 189 0.474184 CCAGCCCATTAGTCCCGATT 59.526 55.000 0.00 0.00 0.00 3.34
189 190 2.056906 GCCAGCCCATTAGTCCCGAT 62.057 60.000 0.00 0.00 0.00 4.18
190 191 2.742116 GCCAGCCCATTAGTCCCGA 61.742 63.158 0.00 0.00 0.00 5.14
191 192 2.203209 GCCAGCCCATTAGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
192 193 2.195956 GGCCAGCCCATTAGTCCC 59.804 66.667 0.00 0.00 0.00 4.46
207 208 1.517361 GCAATGGTTTAGGCAGGGC 59.483 57.895 0.00 0.00 0.00 5.19
208 209 1.329913 GGGCAATGGTTTAGGCAGGG 61.330 60.000 0.00 0.00 0.00 4.45
209 210 1.329913 GGGGCAATGGTTTAGGCAGG 61.330 60.000 0.00 0.00 0.00 4.85
210 211 1.329913 GGGGGCAATGGTTTAGGCAG 61.330 60.000 0.00 0.00 0.00 4.85
211 212 1.305718 GGGGGCAATGGTTTAGGCA 60.306 57.895 0.00 0.00 0.00 4.75
212 213 0.617535 AAGGGGGCAATGGTTTAGGC 60.618 55.000 0.00 0.00 0.00 3.93
213 214 1.951209 AAAGGGGGCAATGGTTTAGG 58.049 50.000 0.00 0.00 0.00 2.69
231 232 6.183361 TGTTGATGTCCTCCCACTAGTAAAAA 60.183 38.462 0.00 0.00 0.00 1.94
232 233 5.308497 TGTTGATGTCCTCCCACTAGTAAAA 59.692 40.000 0.00 0.00 0.00 1.52
233 234 4.841813 TGTTGATGTCCTCCCACTAGTAAA 59.158 41.667 0.00 0.00 0.00 2.01
234 235 4.422057 TGTTGATGTCCTCCCACTAGTAA 58.578 43.478 0.00 0.00 0.00 2.24
235 236 4.055710 TGTTGATGTCCTCCCACTAGTA 57.944 45.455 0.00 0.00 0.00 1.82
236 237 2.902608 TGTTGATGTCCTCCCACTAGT 58.097 47.619 0.00 0.00 0.00 2.57
237 238 3.369892 CCTTGTTGATGTCCTCCCACTAG 60.370 52.174 0.00 0.00 0.00 2.57
238 239 2.571653 CCTTGTTGATGTCCTCCCACTA 59.428 50.000 0.00 0.00 0.00 2.74
239 240 1.352352 CCTTGTTGATGTCCTCCCACT 59.648 52.381 0.00 0.00 0.00 4.00
240 241 1.073923 ACCTTGTTGATGTCCTCCCAC 59.926 52.381 0.00 0.00 0.00 4.61
241 242 1.073763 CACCTTGTTGATGTCCTCCCA 59.926 52.381 0.00 0.00 0.00 4.37
242 243 1.614317 CCACCTTGTTGATGTCCTCCC 60.614 57.143 0.00 0.00 0.00 4.30
243 244 1.351017 TCCACCTTGTTGATGTCCTCC 59.649 52.381 0.00 0.00 0.00 4.30
244 245 2.039084 ACTCCACCTTGTTGATGTCCTC 59.961 50.000 0.00 0.00 0.00 3.71
245 246 2.039084 GACTCCACCTTGTTGATGTCCT 59.961 50.000 0.00 0.00 0.00 3.85
246 247 2.427506 GACTCCACCTTGTTGATGTCC 58.572 52.381 0.00 0.00 0.00 4.02
247 248 2.427506 GGACTCCACCTTGTTGATGTC 58.572 52.381 0.00 0.00 0.00 3.06
248 249 1.270839 CGGACTCCACCTTGTTGATGT 60.271 52.381 0.00 0.00 0.00 3.06
249 250 1.001974 TCGGACTCCACCTTGTTGATG 59.998 52.381 0.00 0.00 0.00 3.07
250 251 1.276421 CTCGGACTCCACCTTGTTGAT 59.724 52.381 0.00 0.00 0.00 2.57
251 252 0.679505 CTCGGACTCCACCTTGTTGA 59.320 55.000 0.00 0.00 0.00 3.18
252 253 0.393077 ACTCGGACTCCACCTTGTTG 59.607 55.000 0.00 0.00 0.00 3.33
253 254 0.680061 GACTCGGACTCCACCTTGTT 59.320 55.000 0.00 0.00 0.00 2.83
254 255 1.524863 CGACTCGGACTCCACCTTGT 61.525 60.000 0.00 0.00 0.00 3.16
255 256 1.213013 CGACTCGGACTCCACCTTG 59.787 63.158 0.00 0.00 0.00 3.61
256 257 3.682792 CGACTCGGACTCCACCTT 58.317 61.111 0.00 0.00 0.00 3.50
267 268 2.473760 ATCGCACTCCTCCGACTCG 61.474 63.158 0.00 0.00 36.18 4.18
268 269 1.064946 CATCGCACTCCTCCGACTC 59.935 63.158 0.00 0.00 36.18 3.36
269 270 1.378646 TCATCGCACTCCTCCGACT 60.379 57.895 0.00 0.00 36.18 4.18
270 271 1.064946 CTCATCGCACTCCTCCGAC 59.935 63.158 0.00 0.00 36.18 4.79
271 272 0.107361 TACTCATCGCACTCCTCCGA 60.107 55.000 0.00 0.00 37.91 4.55
272 273 0.309302 CTACTCATCGCACTCCTCCG 59.691 60.000 0.00 0.00 0.00 4.63
273 274 1.394618 ACTACTCATCGCACTCCTCC 58.605 55.000 0.00 0.00 0.00 4.30
274 275 3.512033 AAACTACTCATCGCACTCCTC 57.488 47.619 0.00 0.00 0.00 3.71
275 276 3.963428 AAAACTACTCATCGCACTCCT 57.037 42.857 0.00 0.00 0.00 3.69
298 299 8.675504 CCTCCTACGATACATAAAACGATAGAT 58.324 37.037 0.00 0.00 41.38 1.98
299 300 7.879677 TCCTCCTACGATACATAAAACGATAGA 59.120 37.037 0.00 0.00 41.38 1.98
300 301 8.037382 TCCTCCTACGATACATAAAACGATAG 57.963 38.462 0.00 0.00 46.19 2.08
301 302 7.120285 CCTCCTCCTACGATACATAAAACGATA 59.880 40.741 0.00 0.00 0.00 2.92
302 303 6.072064 CCTCCTCCTACGATACATAAAACGAT 60.072 42.308 0.00 0.00 0.00 3.73
303 304 5.240183 CCTCCTCCTACGATACATAAAACGA 59.760 44.000 0.00 0.00 0.00 3.85
304 305 5.458891 CCTCCTCCTACGATACATAAAACG 58.541 45.833 0.00 0.00 0.00 3.60
305 306 5.010820 AGCCTCCTCCTACGATACATAAAAC 59.989 44.000 0.00 0.00 0.00 2.43
306 307 5.145564 AGCCTCCTCCTACGATACATAAAA 58.854 41.667 0.00 0.00 0.00 1.52
307 308 4.737578 AGCCTCCTCCTACGATACATAAA 58.262 43.478 0.00 0.00 0.00 1.40
308 309 4.383931 AGCCTCCTCCTACGATACATAA 57.616 45.455 0.00 0.00 0.00 1.90
309 310 5.191124 TCATAGCCTCCTCCTACGATACATA 59.809 44.000 0.00 0.00 0.00 2.29
310 311 2.982339 AGCCTCCTCCTACGATACAT 57.018 50.000 0.00 0.00 0.00 2.29
311 312 3.329814 TCATAGCCTCCTCCTACGATACA 59.670 47.826 0.00 0.00 0.00 2.29
312 313 3.952931 TCATAGCCTCCTCCTACGATAC 58.047 50.000 0.00 0.00 0.00 2.24
313 314 4.043059 AGTTCATAGCCTCCTCCTACGATA 59.957 45.833 0.00 0.00 0.00 2.92
314 315 3.158676 GTTCATAGCCTCCTCCTACGAT 58.841 50.000 0.00 0.00 0.00 3.73
315 316 2.175069 AGTTCATAGCCTCCTCCTACGA 59.825 50.000 0.00 0.00 0.00 3.43
316 317 2.588620 AGTTCATAGCCTCCTCCTACG 58.411 52.381 0.00 0.00 0.00 3.51
317 318 4.651962 AGAAAGTTCATAGCCTCCTCCTAC 59.348 45.833 0.00 0.00 0.00 3.18
318 319 4.884961 AGAAAGTTCATAGCCTCCTCCTA 58.115 43.478 0.00 0.00 0.00 2.94
319 320 3.730269 AGAAAGTTCATAGCCTCCTCCT 58.270 45.455 0.00 0.00 0.00 3.69
320 321 4.406003 TGTAGAAAGTTCATAGCCTCCTCC 59.594 45.833 0.00 0.00 0.00 4.30
321 322 5.105310 TGTGTAGAAAGTTCATAGCCTCCTC 60.105 44.000 0.00 0.00 0.00 3.71
322 323 4.777896 TGTGTAGAAAGTTCATAGCCTCCT 59.222 41.667 0.00 0.00 0.00 3.69
323 324 4.870991 GTGTGTAGAAAGTTCATAGCCTCC 59.129 45.833 0.00 0.00 0.00 4.30
324 325 5.578727 CAGTGTGTAGAAAGTTCATAGCCTC 59.421 44.000 0.00 0.00 0.00 4.70
325 326 5.012148 ACAGTGTGTAGAAAGTTCATAGCCT 59.988 40.000 0.00 0.00 0.00 4.58
326 327 5.238583 ACAGTGTGTAGAAAGTTCATAGCC 58.761 41.667 0.00 0.00 0.00 3.93
327 328 6.159988 AGACAGTGTGTAGAAAGTTCATAGC 58.840 40.000 0.00 0.00 0.00 2.97
328 329 9.295214 CATAGACAGTGTGTAGAAAGTTCATAG 57.705 37.037 0.00 0.00 0.00 2.23
329 330 8.803235 ACATAGACAGTGTGTAGAAAGTTCATA 58.197 33.333 0.00 0.00 0.00 2.15
330 331 7.671302 ACATAGACAGTGTGTAGAAAGTTCAT 58.329 34.615 0.00 0.00 0.00 2.57
331 332 7.050970 ACATAGACAGTGTGTAGAAAGTTCA 57.949 36.000 0.00 0.00 0.00 3.18
332 333 9.291664 GATACATAGACAGTGTGTAGAAAGTTC 57.708 37.037 0.00 0.00 36.31 3.01
333 334 7.968956 CGATACATAGACAGTGTGTAGAAAGTT 59.031 37.037 0.00 0.00 36.31 2.66
334 335 7.120873 ACGATACATAGACAGTGTGTAGAAAGT 59.879 37.037 0.00 1.96 36.31 2.66
335 336 7.473366 ACGATACATAGACAGTGTGTAGAAAG 58.527 38.462 0.00 0.00 36.31 2.62
336 337 7.387119 ACGATACATAGACAGTGTGTAGAAA 57.613 36.000 0.00 0.00 36.31 2.52
337 338 6.997239 ACGATACATAGACAGTGTGTAGAA 57.003 37.500 0.00 0.00 36.31 2.10
338 339 6.997239 AACGATACATAGACAGTGTGTAGA 57.003 37.500 0.00 0.00 36.31 2.59
339 340 8.462143 AAAAACGATACATAGACAGTGTGTAG 57.538 34.615 0.00 0.00 36.31 2.74
373 374 9.905713 AGGCATAAGTAGATCAAAACAAATAGA 57.094 29.630 0.00 0.00 0.00 1.98
385 386 9.885934 CGATACACATATAGGCATAAGTAGATC 57.114 37.037 0.00 0.00 0.00 2.75
386 387 9.628500 TCGATACACATATAGGCATAAGTAGAT 57.372 33.333 0.00 0.00 0.00 1.98
387 388 9.110502 CTCGATACACATATAGGCATAAGTAGA 57.889 37.037 0.00 0.00 0.00 2.59
388 389 8.894731 ACTCGATACACATATAGGCATAAGTAG 58.105 37.037 0.00 0.00 0.00 2.57
389 390 8.803397 ACTCGATACACATATAGGCATAAGTA 57.197 34.615 0.00 0.00 0.00 2.24
390 391 7.414208 CGACTCGATACACATATAGGCATAAGT 60.414 40.741 0.00 0.00 0.00 2.24
391 392 6.907748 CGACTCGATACACATATAGGCATAAG 59.092 42.308 0.00 0.00 0.00 1.73
392 393 6.373495 ACGACTCGATACACATATAGGCATAA 59.627 38.462 5.20 0.00 0.00 1.90
393 394 5.878669 ACGACTCGATACACATATAGGCATA 59.121 40.000 5.20 0.00 0.00 3.14
394 395 4.700692 ACGACTCGATACACATATAGGCAT 59.299 41.667 5.20 0.00 0.00 4.40
395 396 4.070009 ACGACTCGATACACATATAGGCA 58.930 43.478 5.20 0.00 0.00 4.75
396 397 4.681835 ACGACTCGATACACATATAGGC 57.318 45.455 5.20 0.00 0.00 3.93
397 398 6.964741 ACTACGACTCGATACACATATAGG 57.035 41.667 5.20 0.00 0.00 2.57
425 426 4.152402 CCAGCAGACGCGCTATATATTTTT 59.848 41.667 5.73 0.00 45.49 1.94
426 427 3.679980 CCAGCAGACGCGCTATATATTTT 59.320 43.478 5.73 0.00 45.49 1.82
427 428 3.056821 TCCAGCAGACGCGCTATATATTT 60.057 43.478 5.73 0.00 45.49 1.40
428 429 2.492088 TCCAGCAGACGCGCTATATATT 59.508 45.455 5.73 0.00 45.49 1.28
429 430 2.092323 TCCAGCAGACGCGCTATATAT 58.908 47.619 5.73 0.00 45.49 0.86
430 431 1.468914 CTCCAGCAGACGCGCTATATA 59.531 52.381 5.73 0.00 45.49 0.86
431 432 0.242286 CTCCAGCAGACGCGCTATAT 59.758 55.000 5.73 0.00 45.49 0.86
432 433 1.654774 CTCCAGCAGACGCGCTATA 59.345 57.895 5.73 0.00 45.49 1.31
433 434 2.415010 CTCCAGCAGACGCGCTAT 59.585 61.111 5.73 0.00 45.49 2.97
434 435 4.498520 GCTCCAGCAGACGCGCTA 62.499 66.667 5.73 0.00 45.49 4.26
439 440 4.749310 AAGCCGCTCCAGCAGACG 62.749 66.667 0.00 0.00 42.21 4.18
440 441 3.123620 CAAGCCGCTCCAGCAGAC 61.124 66.667 0.00 0.00 42.21 3.51
457 458 3.013439 GCAAAATAGAGCGCGCGC 61.013 61.111 45.10 45.10 42.33 6.86
458 459 1.649348 CTGCAAAATAGAGCGCGCG 60.649 57.895 28.44 28.44 0.00 6.86
459 460 1.936398 GCTGCAAAATAGAGCGCGC 60.936 57.895 26.66 26.66 0.00 6.86
460 461 4.275282 GCTGCAAAATAGAGCGCG 57.725 55.556 0.00 0.00 0.00 6.86
463 464 1.003438 GCTACCGCTGCAAAATAGAGC 60.003 52.381 0.00 0.00 0.00 4.09
464 465 2.555199 AGCTACCGCTGCAAAATAGAG 58.445 47.619 0.00 0.00 46.86 2.43
465 466 2.691409 AGCTACCGCTGCAAAATAGA 57.309 45.000 0.00 0.00 46.86 1.98
500 501 4.659874 ACGAGTTTTTGCGCGCCG 62.660 61.111 30.77 24.22 35.14 6.46
501 502 2.432841 TACACGAGTTTTTGCGCGCC 62.433 55.000 30.77 12.97 35.14 6.53
502 503 0.655048 TTACACGAGTTTTTGCGCGC 60.655 50.000 27.26 27.26 35.14 6.86
503 504 1.441725 GTTTACACGAGTTTTTGCGCG 59.558 47.619 0.00 0.00 37.66 6.86
515 516 0.507785 TTTACAGCGCCGTTTACACG 59.492 50.000 2.29 0.00 46.71 4.49
516 517 1.719295 CGTTTACAGCGCCGTTTACAC 60.719 52.381 2.29 0.00 0.00 2.90
517 518 0.507785 CGTTTACAGCGCCGTTTACA 59.492 50.000 2.29 0.00 0.00 2.41
518 519 0.508213 ACGTTTACAGCGCCGTTTAC 59.492 50.000 2.29 0.49 0.00 2.01
519 520 1.216122 AACGTTTACAGCGCCGTTTA 58.784 45.000 12.93 0.00 40.27 2.01
520 521 0.377905 AAACGTTTACAGCGCCGTTT 59.622 45.000 21.34 21.34 45.48 3.60
521 522 0.377905 AAAACGTTTACAGCGCCGTT 59.622 45.000 15.03 12.93 44.54 4.44
522 523 0.377905 AAAAACGTTTACAGCGCCGT 59.622 45.000 15.03 1.13 34.56 5.68
523 524 3.151848 AAAAACGTTTACAGCGCCG 57.848 47.368 15.03 0.84 0.00 6.46
538 539 2.632541 CACGGCGGCGTACAAAAA 59.367 55.556 36.95 0.00 0.00 1.94
539 540 4.015382 GCACGGCGGCGTACAAAA 62.015 61.111 36.95 0.00 0.00 2.44
557 558 1.795170 ATGTCCAACAGGCGTGCAAC 61.795 55.000 6.26 0.56 0.00 4.17
558 559 1.528076 ATGTCCAACAGGCGTGCAA 60.528 52.632 6.26 0.00 0.00 4.08
559 560 2.112928 ATGTCCAACAGGCGTGCA 59.887 55.556 6.26 0.00 0.00 4.57
560 561 2.562912 CATGTCCAACAGGCGTGC 59.437 61.111 6.26 0.00 0.00 5.34
561 562 2.562912 GCATGTCCAACAGGCGTG 59.437 61.111 4.53 4.53 46.04 5.34
565 566 1.277273 TCTGAGAGCATGTCCAACAGG 59.723 52.381 0.00 0.00 32.28 4.00
566 567 2.344950 GTCTGAGAGCATGTCCAACAG 58.655 52.381 0.00 0.00 0.00 3.16
567 568 1.337167 CGTCTGAGAGCATGTCCAACA 60.337 52.381 0.00 0.00 0.00 3.33
568 569 1.067565 TCGTCTGAGAGCATGTCCAAC 60.068 52.381 0.00 0.00 0.00 3.77
569 570 1.256812 TCGTCTGAGAGCATGTCCAA 58.743 50.000 0.00 0.00 0.00 3.53
570 571 1.256812 TTCGTCTGAGAGCATGTCCA 58.743 50.000 0.00 0.00 0.00 4.02
571 572 2.370281 TTTCGTCTGAGAGCATGTCC 57.630 50.000 0.00 0.00 0.00 4.02
572 573 4.935885 AATTTTCGTCTGAGAGCATGTC 57.064 40.909 0.00 0.00 0.00 3.06
573 574 5.695851 AAAATTTTCGTCTGAGAGCATGT 57.304 34.783 0.00 0.00 0.00 3.21
574 575 6.602179 TGTAAAATTTTCGTCTGAGAGCATG 58.398 36.000 6.72 0.00 0.00 4.06
575 576 6.428159 ACTGTAAAATTTTCGTCTGAGAGCAT 59.572 34.615 6.72 0.00 0.00 3.79
576 577 5.758296 ACTGTAAAATTTTCGTCTGAGAGCA 59.242 36.000 6.72 0.00 0.00 4.26
577 578 6.146347 AGACTGTAAAATTTTCGTCTGAGAGC 59.854 38.462 20.52 5.34 31.19 4.09
578 579 7.644986 AGACTGTAAAATTTTCGTCTGAGAG 57.355 36.000 20.52 9.45 31.19 3.20
679 680 7.116736 AGGTTATAGTTTAACAGGTTGGATGG 58.883 38.462 5.93 0.00 0.00 3.51
703 704 7.490402 GCTCCCAGTTTCATTATCAAAATGAAG 59.510 37.037 11.67 3.39 44.49 3.02
830 836 1.467342 GTGGTCTTTGTTCATACCCGC 59.533 52.381 0.00 0.00 0.00 6.13
831 837 2.773487 TGTGGTCTTTGTTCATACCCG 58.227 47.619 0.00 0.00 0.00 5.28
837 847 4.196193 CACCTAGTTGTGGTCTTTGTTCA 58.804 43.478 0.00 0.00 35.28 3.18
855 865 4.850386 ACTGGGAGGAACTAAAATACACCT 59.150 41.667 0.00 0.00 41.55 4.00
897 907 4.884668 TCGTAATTTGAACTCTGGGTCT 57.115 40.909 0.00 0.00 0.00 3.85
898 908 4.995487 ACTTCGTAATTTGAACTCTGGGTC 59.005 41.667 0.00 0.00 0.00 4.46
899 909 4.969484 ACTTCGTAATTTGAACTCTGGGT 58.031 39.130 0.00 0.00 0.00 4.51
900 910 4.994852 TGACTTCGTAATTTGAACTCTGGG 59.005 41.667 0.00 0.00 0.00 4.45
901 911 6.539649 TTGACTTCGTAATTTGAACTCTGG 57.460 37.500 0.00 0.00 0.00 3.86
1128 1147 1.433879 GTCCTCGACGGTGATGGAG 59.566 63.158 0.00 0.00 0.00 3.86
1427 1446 1.376037 CCGGTCTTGTTCTGCTCCC 60.376 63.158 0.00 0.00 0.00 4.30
1638 1657 6.432783 TGGATGAAAACCATACAGTACAAAGG 59.567 38.462 0.00 0.00 41.09 3.11
1641 1663 7.504238 ACTTTGGATGAAAACCATACAGTACAA 59.496 33.333 0.00 0.00 46.22 2.41
1700 1722 4.485024 ACTACAACTACTCGATATGGCG 57.515 45.455 0.00 0.00 0.00 5.69
1738 1760 9.060137 TGTTTACATAAGGGTAAGGAAGGAATA 57.940 33.333 0.00 0.00 34.92 1.75
1751 1773 8.846211 ACCATCGAAAATATGTTTACATAAGGG 58.154 33.333 6.67 3.63 41.60 3.95
1763 1785 7.031226 ACCAAGATTCACCATCGAAAATATG 57.969 36.000 0.00 0.00 36.93 1.78
1765 1787 6.624861 GCAACCAAGATTCACCATCGAAAATA 60.625 38.462 0.00 0.00 36.93 1.40
1928 2082 6.757897 AGTTTGTCTGTTCACTCATTTCAA 57.242 33.333 0.00 0.00 0.00 2.69
1973 2127 6.696411 TGTGAACACAACTTTTTCCTGAATT 58.304 32.000 5.11 0.00 38.56 2.17
2051 2208 6.153340 AGGCATGCTTTAGTATGTTTGTTCAT 59.847 34.615 18.92 0.00 39.79 2.57
2069 2227 9.695526 TTCAAAATCAAATGTATATAGGCATGC 57.304 29.630 9.90 9.90 0.00 4.06
2100 2260 7.302524 TGTTCGCAAAAATAAGATGTCCTAAC 58.697 34.615 0.00 0.00 0.00 2.34
2120 2280 6.147164 TGGTTAAATGCTACTTTCTCTGTTCG 59.853 38.462 0.00 0.00 0.00 3.95
2253 2413 9.846248 GTGTTGCATGTTAGATTTATTCTTCTT 57.154 29.630 0.00 0.00 35.79 2.52
2254 2414 8.462016 GGTGTTGCATGTTAGATTTATTCTTCT 58.538 33.333 0.00 0.00 35.79 2.85
2255 2415 7.702348 GGGTGTTGCATGTTAGATTTATTCTTC 59.298 37.037 0.00 0.00 35.79 2.87
2256 2416 7.363793 GGGGTGTTGCATGTTAGATTTATTCTT 60.364 37.037 0.00 0.00 35.79 2.52
2257 2417 6.096846 GGGGTGTTGCATGTTAGATTTATTCT 59.903 38.462 0.00 0.00 38.57 2.40
2258 2418 6.096846 AGGGGTGTTGCATGTTAGATTTATTC 59.903 38.462 0.00 0.00 0.00 1.75
2259 2419 5.957774 AGGGGTGTTGCATGTTAGATTTATT 59.042 36.000 0.00 0.00 0.00 1.40
2260 2420 5.518865 AGGGGTGTTGCATGTTAGATTTAT 58.481 37.500 0.00 0.00 0.00 1.40
2261 2421 4.929479 AGGGGTGTTGCATGTTAGATTTA 58.071 39.130 0.00 0.00 0.00 1.40
2262 2422 3.778265 AGGGGTGTTGCATGTTAGATTT 58.222 40.909 0.00 0.00 0.00 2.17
2263 2423 3.456380 AGGGGTGTTGCATGTTAGATT 57.544 42.857 0.00 0.00 0.00 2.40
2264 2424 3.456380 AAGGGGTGTTGCATGTTAGAT 57.544 42.857 0.00 0.00 0.00 1.98
2265 2425 2.969821 AAGGGGTGTTGCATGTTAGA 57.030 45.000 0.00 0.00 0.00 2.10
2266 2426 6.959639 AATATAAGGGGTGTTGCATGTTAG 57.040 37.500 0.00 0.00 0.00 2.34
2267 2427 7.726033 AAAATATAAGGGGTGTTGCATGTTA 57.274 32.000 0.00 0.00 0.00 2.41
2268 2428 6.619329 AAAATATAAGGGGTGTTGCATGTT 57.381 33.333 0.00 0.00 0.00 2.71
2269 2429 7.122715 TCTAAAATATAAGGGGTGTTGCATGT 58.877 34.615 0.00 0.00 0.00 3.21
2270 2430 7.255590 CCTCTAAAATATAAGGGGTGTTGCATG 60.256 40.741 0.00 0.00 0.00 4.06
2271 2431 6.777580 CCTCTAAAATATAAGGGGTGTTGCAT 59.222 38.462 0.00 0.00 0.00 3.96
2272 2432 6.069323 TCCTCTAAAATATAAGGGGTGTTGCA 60.069 38.462 0.00 0.00 34.70 4.08
2273 2433 6.362248 TCCTCTAAAATATAAGGGGTGTTGC 58.638 40.000 0.00 0.00 34.70 4.17
2274 2434 7.574607 ACTCCTCTAAAATATAAGGGGTGTTG 58.425 38.462 0.00 0.00 41.13 3.33
2275 2435 7.766736 ACTCCTCTAAAATATAAGGGGTGTT 57.233 36.000 0.00 0.00 41.13 3.32
2327 2487 2.661866 CCCATTCGACGCGGGATC 60.662 66.667 12.47 0.00 43.21 3.36
2416 4069 1.878953 CGTGGCTGTGGTAGTTCTTT 58.121 50.000 0.00 0.00 0.00 2.52
2421 4074 2.030562 GTGCGTGGCTGTGGTAGT 59.969 61.111 0.00 0.00 0.00 2.73
2425 4078 2.896801 GAACAGTGCGTGGCTGTGG 61.897 63.158 8.85 0.00 45.36 4.17
2493 4153 6.013812 AGAGCTGGTGATAAAGAAAGAAGTCT 60.014 38.462 0.00 0.00 0.00 3.24
2522 4182 3.064324 GAGTGCCCATGTGTGCCC 61.064 66.667 0.00 0.00 0.00 5.36
2552 4214 1.228429 TGCACAGGGTTTGGGTAGC 60.228 57.895 0.00 0.00 30.75 3.58
2553 4215 0.179004 TGTGCACAGGGTTTGGGTAG 60.179 55.000 17.42 0.00 30.75 3.18
2559 4221 2.071778 AGTTGATGTGCACAGGGTTT 57.928 45.000 25.84 7.75 0.00 3.27
2564 4257 6.364165 CCTTTAATTCAAGTTGATGTGCACAG 59.636 38.462 25.84 9.66 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.