Multiple sequence alignment - TraesCS6B01G144500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G144500 chr6B 100.000 8946 0 0 1 8946 143993139 144002084 0.000000e+00 16521.0
1 TraesCS6B01G144500 chr6D 95.733 3234 71 15 2687 5855 68907962 68911193 0.000000e+00 5145.0
2 TraesCS6B01G144500 chr6D 94.335 2542 57 26 5890 8367 68911187 68913705 0.000000e+00 3816.0
3 TraesCS6B01G144500 chr6D 89.950 1791 95 31 640 2371 68905759 68907523 0.000000e+00 2231.0
4 TraesCS6B01G144500 chr6D 83.005 659 62 28 2 639 68904798 68905427 1.310000e-152 551.0
5 TraesCS6B01G144500 chr6D 96.831 284 6 3 2407 2689 68907522 68907803 1.050000e-128 472.0
6 TraesCS6B01G144500 chr6D 97.701 87 1 1 8860 8946 68914168 68914253 2.010000e-31 148.0
7 TraesCS6B01G144500 chr6D 79.295 227 28 14 8385 8601 68913698 68913915 3.370000e-29 141.0
8 TraesCS6B01G144500 chr6D 77.682 233 36 9 8595 8813 68913941 68914171 2.620000e-25 128.0
9 TraesCS6B01G144500 chr6D 86.667 60 8 0 191 250 472575877 472575818 5.800000e-07 67.6
10 TraesCS6B01G144500 chr6A 92.554 2498 104 25 4095 6554 87245836 87248289 0.000000e+00 3507.0
11 TraesCS6B01G144500 chr6A 93.971 1725 59 17 6764 8458 87248298 87250007 0.000000e+00 2567.0
12 TraesCS6B01G144500 chr6A 91.834 1690 65 37 640 2291 87242574 87244228 0.000000e+00 2289.0
13 TraesCS6B01G144500 chr6A 85.274 1623 131 49 2463 4033 87244244 87245810 0.000000e+00 1574.0
14 TraesCS6B01G144500 chr6A 79.936 623 64 20 3 601 87241915 87242500 1.400000e-107 401.0
15 TraesCS6B01G144500 chr3B 86.207 116 15 1 1171 1286 39229951 39229837 3.390000e-24 124.0
16 TraesCS6B01G144500 chr7D 87.671 73 9 0 2025 2097 532257553 532257625 1.600000e-12 86.1
17 TraesCS6B01G144500 chr3D 97.143 35 1 0 8912 8946 579682922 579682956 9.700000e-05 60.2
18 TraesCS6B01G144500 chr3A 97.143 35 1 0 8912 8946 714783035 714783069 9.700000e-05 60.2
19 TraesCS6B01G144500 chr1D 97.143 35 1 0 8912 8946 439355646 439355680 9.700000e-05 60.2
20 TraesCS6B01G144500 chr1D 94.286 35 2 0 8912 8946 64330984 64331018 5.000000e-03 54.7
21 TraesCS6B01G144500 chr1B 97.143 35 1 0 8912 8946 596170451 596170485 9.700000e-05 60.2
22 TraesCS6B01G144500 chr7A 92.105 38 3 0 196 233 548813153 548813116 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G144500 chr6B 143993139 144002084 8945 False 16521.0 16521 100.0000 1 8946 1 chr6B.!!$F1 8945
1 TraesCS6B01G144500 chr6D 68904798 68914253 9455 False 1579.0 5145 89.3165 2 8946 8 chr6D.!!$F1 8944
2 TraesCS6B01G144500 chr6A 87241915 87250007 8092 False 2067.6 3507 88.7138 3 8458 5 chr6A.!!$F1 8455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 396 0.106521 TGGGCAAAAGCTGAAAAGCC 59.893 50.000 7.23 7.23 41.29 4.35 F
1736 2148 0.038744 ATCTGGCAAGGTCTTGTGGG 59.961 55.000 11.71 3.54 42.31 4.61 F
1742 2154 0.400213 CAAGGTCTTGTGGGGTGCTA 59.600 55.000 2.74 0.00 35.92 3.49 F
2123 2537 1.645034 CATGTTCCTACTCTGCCACG 58.355 55.000 0.00 0.00 0.00 4.94 F
2133 2547 2.851195 ACTCTGCCACGATTCAGTTTT 58.149 42.857 0.00 0.00 0.00 2.43 F
3694 4390 4.261656 GGACATACATACTCCCTCTGTTCG 60.262 50.000 0.00 0.00 0.00 3.95 F
5376 6092 0.633921 AGCTGCTTCCTCTCTCCCTA 59.366 55.000 0.00 0.00 0.00 3.53 F
5538 6270 0.181350 AGGATGAGGTGGAAATCGGC 59.819 55.000 0.00 0.00 0.00 5.54 F
5556 6288 1.200020 GGCGCTTGCTATTGTCTGTTT 59.800 47.619 7.64 0.00 39.13 2.83 F
6506 7313 2.912956 TCCTCTTGCACTTGGTATCCTT 59.087 45.455 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2502 0.820891 CATGGCAGGCACATACCCTC 60.821 60.000 0.00 0.00 0.00 4.30 R
2877 3514 2.035066 GGAGCAAAAAGAGCAAAGCAGA 59.965 45.455 0.00 0.00 0.00 4.26 R
3170 3815 3.378112 TCACAACTCAAAGTGCTCAAAGG 59.622 43.478 0.00 0.00 35.76 3.11 R
4013 4711 7.392673 AGAAACAATTTAGAGAGATGTGCACAT 59.607 33.333 31.82 31.82 39.70 3.21 R
4163 4861 3.818210 GCGTATCATCTGGAGAAGAGAGA 59.182 47.826 0.00 0.00 38.67 3.10 R
5411 6143 0.250901 AGCGAGTGCCTGGAAACAAT 60.251 50.000 0.00 0.00 44.31 2.71 R
6754 7570 0.107831 TAACAACTGGCGGAAGTGCT 59.892 50.000 0.00 0.00 34.52 4.40 R
6755 7571 0.948678 TTAACAACTGGCGGAAGTGC 59.051 50.000 0.00 0.00 0.00 4.40 R
6761 7577 2.065512 GGCAAAATTAACAACTGGCGG 58.934 47.619 0.00 0.00 0.00 6.13 R
8533 9408 1.011293 TCCCATCTCTTCCAATCCCCT 59.989 52.381 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.925261 TTCCCCACCTTTTCCCATTTA 57.075 42.857 0.00 0.00 0.00 1.40
74 75 4.152938 CGAGCAAAATTGTGTCTCTCATGA 59.847 41.667 14.29 0.00 0.00 3.07
141 143 4.142093 GCCCCTCGCGGAAGTAAATATATA 60.142 45.833 6.13 0.00 0.00 0.86
151 153 7.222999 GCGGAAGTAAATATATATGCCTCTCAC 59.777 40.741 0.00 0.00 0.00 3.51
222 240 0.884704 TGCCTCCACGAGAAGCAAAC 60.885 55.000 0.00 0.00 0.00 2.93
250 268 4.558697 GCCTCTGGCGTAAGAAAACAAATT 60.559 41.667 0.00 0.00 39.62 1.82
252 270 5.278266 CCTCTGGCGTAAGAAAACAAATTGA 60.278 40.000 0.00 0.00 43.02 2.57
257 275 8.202745 TGGCGTAAGAAAACAAATTGATTTTT 57.797 26.923 0.00 0.00 43.02 1.94
268 286 6.816136 ACAAATTGATTTTTCCTTTCCGAGT 58.184 32.000 0.00 0.00 0.00 4.18
275 293 0.400213 TTCCTTTCCGAGTGGCACAT 59.600 50.000 21.41 4.74 44.52 3.21
299 317 0.536006 AGCAAACCTGTGCCTCTCAC 60.536 55.000 0.00 0.00 46.14 3.51
374 393 3.625649 AAACTGGGCAAAAGCTGAAAA 57.374 38.095 0.00 0.00 0.00 2.29
375 394 2.896745 ACTGGGCAAAAGCTGAAAAG 57.103 45.000 0.00 0.00 0.00 2.27
377 396 0.106521 TGGGCAAAAGCTGAAAAGCC 59.893 50.000 7.23 7.23 41.29 4.35
378 397 0.945743 GGGCAAAAGCTGAAAAGCCG 60.946 55.000 9.04 0.00 42.89 5.52
381 409 2.407090 GCAAAAGCTGAAAAGCCGAAT 58.593 42.857 0.00 0.00 34.90 3.34
384 412 4.447389 GCAAAAGCTGAAAAGCCGAATAAA 59.553 37.500 0.00 0.00 34.90 1.40
385 413 5.120674 GCAAAAGCTGAAAAGCCGAATAAAT 59.879 36.000 0.00 0.00 34.90 1.40
403 431 8.403236 CGAATAAATTCTAAAATCCGGAAAGGT 58.597 33.333 9.01 0.00 36.63 3.50
419 447 8.862085 TCCGGAAAGGTATAAGAAAACAAAATT 58.138 29.630 0.00 0.00 41.99 1.82
422 450 9.135843 GGAAAGGTATAAGAAAACAAAATTCCG 57.864 33.333 0.00 0.00 0.00 4.30
425 453 8.857694 AGGTATAAGAAAACAAAATTCCGAGA 57.142 30.769 0.00 0.00 0.00 4.04
445 473 2.047151 AAACGCCAAGCACACGACAG 62.047 55.000 0.00 0.00 0.00 3.51
448 476 1.301401 GCCAAGCACACGACAGGTA 60.301 57.895 0.00 0.00 0.00 3.08
559 587 1.082431 CTCTCGACGGATGCTAGCG 60.082 63.158 10.77 0.00 0.00 4.26
561 589 0.531311 TCTCGACGGATGCTAGCGTA 60.531 55.000 10.03 0.00 0.00 4.42
589 617 3.604582 AGAGCAAGAAGTAGCATTCACC 58.395 45.455 0.00 0.00 0.00 4.02
590 618 3.262915 AGAGCAAGAAGTAGCATTCACCT 59.737 43.478 0.00 0.00 0.00 4.00
616 934 1.439644 GCTCCTCTCGCCAGGTTAG 59.560 63.158 0.00 0.00 34.76 2.34
618 936 1.187087 CTCCTCTCGCCAGGTTAGTT 58.813 55.000 0.00 0.00 34.76 2.24
678 1041 6.221659 AGCGTAAACTAGCCCATTACTATTC 58.778 40.000 0.00 0.00 0.00 1.75
712 1075 2.027897 CCGAACCCGTGACGACAA 59.972 61.111 6.54 0.00 0.00 3.18
713 1076 2.305127 CCGAACCCGTGACGACAAC 61.305 63.158 6.54 0.00 0.00 3.32
714 1077 1.589461 CGAACCCGTGACGACAACA 60.589 57.895 6.54 0.00 0.00 3.33
715 1078 1.545614 CGAACCCGTGACGACAACAG 61.546 60.000 6.54 0.00 0.00 3.16
726 1091 1.341531 ACGACAACAGAGAGTCCAAGG 59.658 52.381 0.00 0.00 0.00 3.61
729 1094 0.322008 CAACAGAGAGTCCAAGGGCC 60.322 60.000 0.00 0.00 0.00 5.80
812 1177 3.822192 CATCCACCTCGCGTCCGA 61.822 66.667 5.77 0.00 42.01 4.55
822 1188 2.963371 GCGTCCGACTCCAACTCT 59.037 61.111 0.00 0.00 0.00 3.24
860 1232 2.994995 TCTTCCGCTTCCGCCTCA 60.995 61.111 0.00 0.00 0.00 3.86
861 1233 2.510238 CTTCCGCTTCCGCCTCAG 60.510 66.667 0.00 0.00 0.00 3.35
883 1263 2.495572 CCCCCAGAAAATAAACCCCCAA 60.496 50.000 0.00 0.00 0.00 4.12
884 1264 2.837591 CCCCAGAAAATAAACCCCCAAG 59.162 50.000 0.00 0.00 0.00 3.61
899 1279 3.996124 AAGCAGCACCGCGAGTCT 61.996 61.111 8.23 0.00 36.85 3.24
900 1280 4.731612 AGCAGCACCGCGAGTCTG 62.732 66.667 8.23 12.28 36.85 3.51
910 1295 2.403987 CGAGTCTGCCTCCGTACG 59.596 66.667 8.69 8.69 36.82 3.67
911 1296 2.104859 CGAGTCTGCCTCCGTACGA 61.105 63.158 18.76 1.79 36.82 3.43
919 1304 4.824166 CTCCGTACGACCGCACCG 62.824 72.222 18.76 0.00 0.00 4.94
939 1325 4.733725 TGCCCCCGAACCCTAGCT 62.734 66.667 0.00 0.00 0.00 3.32
942 1332 1.232216 CCCCCGAACCCTAGCTAGA 59.768 63.158 22.70 0.00 0.00 2.43
943 1333 0.828343 CCCCCGAACCCTAGCTAGAG 60.828 65.000 22.70 11.93 0.00 2.43
945 1335 1.465200 CCCGAACCCTAGCTAGAGCC 61.465 65.000 22.70 3.87 43.38 4.70
946 1336 0.468400 CCGAACCCTAGCTAGAGCCT 60.468 60.000 22.70 0.00 43.38 4.58
947 1337 0.671251 CGAACCCTAGCTAGAGCCTG 59.329 60.000 22.70 4.67 43.38 4.85
948 1338 0.391228 GAACCCTAGCTAGAGCCTGC 59.609 60.000 22.70 2.78 43.38 4.85
949 1339 1.051556 AACCCTAGCTAGAGCCTGCC 61.052 60.000 22.70 0.00 43.38 4.85
950 1340 1.458398 CCCTAGCTAGAGCCTGCCA 60.458 63.158 22.70 0.00 43.38 4.92
951 1341 1.470996 CCCTAGCTAGAGCCTGCCAG 61.471 65.000 22.70 1.70 43.38 4.85
952 1342 1.367102 CTAGCTAGAGCCTGCCAGC 59.633 63.158 16.15 1.05 43.38 4.85
953 1343 1.381735 TAGCTAGAGCCTGCCAGCA 60.382 57.895 0.00 0.00 43.38 4.41
954 1344 1.398174 TAGCTAGAGCCTGCCAGCAG 61.398 60.000 12.78 12.78 43.38 4.24
955 1345 2.203042 CTAGAGCCTGCCAGCAGC 60.203 66.667 14.26 9.65 42.35 5.25
1130 1528 0.524392 GACGACGATCTGGTGAGCTG 60.524 60.000 0.00 0.00 0.00 4.24
1209 1612 2.278857 CTTCGATCTGCGGTCCCG 60.279 66.667 0.24 0.24 41.33 5.14
1296 1701 2.202623 GAGCTCTACGTGGTGCGG 60.203 66.667 18.28 0.94 46.52 5.69
1351 1756 0.671251 CCTCGAGAGCATGAGGTACC 59.329 60.000 15.71 2.73 45.48 3.34
1416 1826 1.644786 CCGAATTCTGTTCCGTGCCC 61.645 60.000 3.52 0.00 0.00 5.36
1477 1887 0.595053 TCCGATCTCTGCGCGAATTC 60.595 55.000 12.10 0.00 0.00 2.17
1487 1897 1.145759 GCGCGAATTCGATGAGTGGA 61.146 55.000 31.01 0.00 43.02 4.02
1509 1919 1.288037 TGGCTCTAGTTCTGGCCTCTA 59.712 52.381 3.32 0.96 44.36 2.43
1510 1920 2.091055 TGGCTCTAGTTCTGGCCTCTAT 60.091 50.000 3.32 0.00 44.36 1.98
1511 1921 3.140332 TGGCTCTAGTTCTGGCCTCTATA 59.860 47.826 3.32 0.00 44.36 1.31
1519 1929 5.893500 AGTTCTGGCCTCTATATAGCTACA 58.106 41.667 3.32 0.00 0.00 2.74
1539 1949 5.007385 ACATCTACCTGACGAACCATTAC 57.993 43.478 0.00 0.00 0.00 1.89
1541 1951 2.424601 TCTACCTGACGAACCATTACGG 59.575 50.000 0.00 0.00 42.50 4.02
1672 2084 5.663456 AGATTTCTGCTCTCTGTCTGAATC 58.337 41.667 0.00 0.00 0.00 2.52
1692 2104 3.420893 TCCCTTGAATGTGTAGGCTTTG 58.579 45.455 0.00 0.00 0.00 2.77
1699 2111 2.880963 TGTGTAGGCTTTGGTTTTGC 57.119 45.000 0.00 0.00 0.00 3.68
1731 2143 3.387962 TCCATCTATCTGGCAAGGTCTT 58.612 45.455 0.00 0.00 36.16 3.01
1736 2148 0.038744 ATCTGGCAAGGTCTTGTGGG 59.961 55.000 11.71 3.54 42.31 4.61
1742 2154 0.400213 CAAGGTCTTGTGGGGTGCTA 59.600 55.000 2.74 0.00 35.92 3.49
1819 2231 2.440409 CCACTGAGATTTTGACCCCTG 58.560 52.381 0.00 0.00 0.00 4.45
1951 2363 6.463049 GCCAGAATCTGAGCTAAAGGTATACA 60.463 42.308 12.53 0.00 32.44 2.29
1965 2377 6.869206 AAGGTATACATTACACTCACACCT 57.131 37.500 0.00 0.00 35.42 4.00
1966 2378 6.869206 AGGTATACATTACACTCACACCTT 57.131 37.500 5.01 0.00 29.68 3.50
1974 2386 6.037830 ACATTACACTCACACCTTTGTTGTAC 59.962 38.462 0.00 0.00 31.66 2.90
2000 2414 7.516785 CGGTGATTTAAATACTGATTCTGGACG 60.517 40.741 0.00 0.00 0.00 4.79
2006 2420 5.339008 AATACTGATTCTGGACGTTGCTA 57.661 39.130 0.00 0.00 0.00 3.49
2014 2428 7.269316 TGATTCTGGACGTTGCTAATATAACA 58.731 34.615 0.00 0.00 0.00 2.41
2055 2469 6.551227 AGAAGTACATGGCTGACATACTATCA 59.449 38.462 0.00 0.00 37.84 2.15
2088 2502 3.260740 GACAATGTCTGCTGAAGGAGAG 58.739 50.000 6.07 0.00 43.19 3.20
2123 2537 1.645034 CATGTTCCTACTCTGCCACG 58.355 55.000 0.00 0.00 0.00 4.94
2133 2547 2.851195 ACTCTGCCACGATTCAGTTTT 58.149 42.857 0.00 0.00 0.00 2.43
2164 2578 7.999457 TTCAGCGTGAATTGAGGTTAGCCTT 62.999 44.000 0.00 0.00 36.99 4.35
2280 2696 9.599866 TGAATATGTGAGGTAAGAACAATACTG 57.400 33.333 0.00 0.00 0.00 2.74
2374 2808 8.451908 AATTAGGTATTTAGTTCATGTCTGCC 57.548 34.615 0.00 0.00 0.00 4.85
2375 2809 5.700402 AGGTATTTAGTTCATGTCTGCCT 57.300 39.130 0.00 0.00 0.00 4.75
2376 2810 6.067217 AGGTATTTAGTTCATGTCTGCCTT 57.933 37.500 0.00 0.00 0.00 4.35
2377 2811 7.195374 AGGTATTTAGTTCATGTCTGCCTTA 57.805 36.000 0.00 0.00 0.00 2.69
2378 2812 7.806180 AGGTATTTAGTTCATGTCTGCCTTAT 58.194 34.615 0.00 0.00 0.00 1.73
2379 2813 8.934697 AGGTATTTAGTTCATGTCTGCCTTATA 58.065 33.333 0.00 0.00 0.00 0.98
2380 2814 9.209175 GGTATTTAGTTCATGTCTGCCTTATAG 57.791 37.037 0.00 0.00 0.00 1.31
2381 2815 9.982651 GTATTTAGTTCATGTCTGCCTTATAGA 57.017 33.333 0.00 0.00 0.00 1.98
2383 2817 8.893219 TTTAGTTCATGTCTGCCTTATAGATG 57.107 34.615 0.00 0.00 0.00 2.90
2384 2818 6.491714 AGTTCATGTCTGCCTTATAGATGT 57.508 37.500 0.00 0.00 0.00 3.06
2385 2819 7.603180 AGTTCATGTCTGCCTTATAGATGTA 57.397 36.000 0.00 0.00 0.00 2.29
2386 2820 8.023021 AGTTCATGTCTGCCTTATAGATGTAA 57.977 34.615 0.00 0.00 0.00 2.41
2387 2821 8.486210 AGTTCATGTCTGCCTTATAGATGTAAA 58.514 33.333 0.00 0.00 0.00 2.01
2388 2822 9.109393 GTTCATGTCTGCCTTATAGATGTAAAA 57.891 33.333 0.00 0.00 0.00 1.52
2389 2823 8.893219 TCATGTCTGCCTTATAGATGTAAAAG 57.107 34.615 0.00 0.00 0.00 2.27
2390 2824 8.486210 TCATGTCTGCCTTATAGATGTAAAAGT 58.514 33.333 0.00 0.00 0.00 2.66
2391 2825 8.554528 CATGTCTGCCTTATAGATGTAAAAGTG 58.445 37.037 0.00 0.00 0.00 3.16
2392 2826 7.847096 TGTCTGCCTTATAGATGTAAAAGTGA 58.153 34.615 0.00 0.00 0.00 3.41
2393 2827 8.318412 TGTCTGCCTTATAGATGTAAAAGTGAA 58.682 33.333 0.00 0.00 0.00 3.18
2394 2828 9.162764 GTCTGCCTTATAGATGTAAAAGTGAAA 57.837 33.333 0.00 0.00 0.00 2.69
2395 2829 9.905713 TCTGCCTTATAGATGTAAAAGTGAAAT 57.094 29.630 0.00 0.00 0.00 2.17
2415 2849 9.196552 GTGAAATATTGTTTCTTTCCTTCCAAG 57.803 33.333 7.31 0.00 0.00 3.61
2426 2860 5.590259 TCTTTCCTTCCAAGAGTTCTGTTTG 59.410 40.000 0.00 0.00 0.00 2.93
2479 2913 9.889128 CAAAAATCCATACCCAGAAATACAAAT 57.111 29.630 0.00 0.00 0.00 2.32
2583 3023 7.819900 GGTAGTTGTAGCATGATAGGATAAAGG 59.180 40.741 0.00 0.00 0.00 3.11
2584 3024 7.380423 AGTTGTAGCATGATAGGATAAAGGT 57.620 36.000 0.00 0.00 0.00 3.50
2591 3031 6.774656 AGCATGATAGGATAAAGGTTTCCTTG 59.225 38.462 0.00 0.00 43.92 3.61
2708 3310 8.640063 TTTGTATATAGCTATCGGACCAAGTA 57.360 34.615 10.16 0.00 0.00 2.24
2877 3514 7.833786 TCTTGTATCATTACTACGTGGAACTT 58.166 34.615 5.70 0.00 31.75 2.66
2960 3601 8.619683 TTTACTTAGGAGGCTTAACTTCCTAT 57.380 34.615 13.08 6.03 33.61 2.57
2961 3602 6.487299 ACTTAGGAGGCTTAACTTCCTATG 57.513 41.667 17.37 17.37 33.61 2.23
3151 3796 4.935352 AAAAGCTGCTGTTTTGGACATA 57.065 36.364 1.35 0.00 37.69 2.29
3170 3815 6.294286 GGACATAGGCAGTCTCTAGTATTCAC 60.294 46.154 5.06 0.00 36.29 3.18
3280 3928 9.654663 ACTATGGTTTTTGACTATCTAACTGAC 57.345 33.333 0.00 0.00 31.27 3.51
3694 4390 4.261656 GGACATACATACTCCCTCTGTTCG 60.262 50.000 0.00 0.00 0.00 3.95
3834 4530 6.264292 TGCACAATTTCAACCAGTACATTACT 59.736 34.615 0.00 0.00 40.28 2.24
3854 4550 5.435686 ACTTGTAGCTATTCACCAATGGA 57.564 39.130 6.16 0.00 0.00 3.41
3871 4569 7.771826 CACCAATGGATATACTGATGCATGATA 59.228 37.037 6.16 0.00 37.86 2.15
3873 4571 9.350951 CCAATGGATATACTGATGCATGATATT 57.649 33.333 2.46 0.00 37.86 1.28
4033 4731 9.453572 TTTCTAATGTGCACATCTCTCTAAATT 57.546 29.630 31.45 15.45 35.10 1.82
4040 4738 7.229306 TGTGCACATCTCTCTAAATTGTTTCTT 59.771 33.333 17.42 0.00 0.00 2.52
4163 4861 9.017509 TCTATCTCAATTTCAAACTGCAGATTT 57.982 29.630 23.35 14.06 0.00 2.17
4167 4865 7.230108 TCTCAATTTCAAACTGCAGATTTCTCT 59.770 33.333 23.35 0.00 0.00 3.10
4453 5151 5.163301 ACGCCATGTATGTATTTCTCTCCTT 60.163 40.000 0.00 0.00 0.00 3.36
4454 5152 6.041637 ACGCCATGTATGTATTTCTCTCCTTA 59.958 38.462 0.00 0.00 0.00 2.69
4469 5167 5.030820 CTCTCCTTACTTTCCCTCCCTTTA 58.969 45.833 0.00 0.00 0.00 1.85
4487 5185 2.249309 TACCTCTTTCCACCTCCCTC 57.751 55.000 0.00 0.00 0.00 4.30
4672 5381 8.863872 AAATAGTTAATAACACCAAGCTGAGT 57.136 30.769 5.89 0.00 0.00 3.41
4966 5677 6.601613 TGGAGAATGTTATTTGTGGTCCATAC 59.398 38.462 0.00 0.00 0.00 2.39
4967 5678 6.601613 GGAGAATGTTATTTGTGGTCCATACA 59.398 38.462 0.00 0.00 0.00 2.29
5043 5758 1.948145 CCATCTGATTCTTCCAGCAGC 59.052 52.381 0.00 0.00 0.00 5.25
5127 5843 5.754782 AGCCTGGTACAATCACATCATTAA 58.245 37.500 0.00 0.00 38.70 1.40
5128 5844 6.186957 AGCCTGGTACAATCACATCATTAAA 58.813 36.000 0.00 0.00 38.70 1.52
5371 6087 6.060788 CCAATTTATTAGCTGCTTCCTCTCT 58.939 40.000 7.79 0.00 0.00 3.10
5376 6092 0.633921 AGCTGCTTCCTCTCTCCCTA 59.366 55.000 0.00 0.00 0.00 3.53
5427 6159 4.590850 AAGAAATTGTTTCCAGGCACTC 57.409 40.909 0.00 0.00 40.54 3.51
5538 6270 0.181350 AGGATGAGGTGGAAATCGGC 59.819 55.000 0.00 0.00 0.00 5.54
5556 6288 1.200020 GGCGCTTGCTATTGTCTGTTT 59.800 47.619 7.64 0.00 39.13 2.83
5618 6350 6.127140 GGTTTCCTGTATTCCAGCTAAGAGTA 60.127 42.308 0.00 0.00 40.06 2.59
5627 6359 7.661536 ATTCCAGCTAAGAGTACAACTATCA 57.338 36.000 0.00 0.00 0.00 2.15
5756 6488 5.173774 TCATATTTTTCTTGATGGAGCGC 57.826 39.130 0.00 0.00 0.00 5.92
5803 6535 4.546829 TTATACGCCTTCTTCCTGTTGT 57.453 40.909 0.00 0.00 0.00 3.32
5848 6580 6.127619 GGAAAGCAGGTAAATACTCAGCATTT 60.128 38.462 0.00 0.00 0.00 2.32
5849 6581 5.824904 AGCAGGTAAATACTCAGCATTTG 57.175 39.130 0.00 0.00 0.00 2.32
5850 6582 4.096984 AGCAGGTAAATACTCAGCATTTGC 59.903 41.667 0.00 0.00 42.49 3.68
5851 6583 4.142403 GCAGGTAAATACTCAGCATTTGCA 60.142 41.667 5.20 0.00 45.16 4.08
5852 6584 5.450965 GCAGGTAAATACTCAGCATTTGCAT 60.451 40.000 5.20 0.00 45.16 3.96
5853 6585 6.567050 CAGGTAAATACTCAGCATTTGCATT 58.433 36.000 5.20 0.00 45.16 3.56
5854 6586 7.037438 CAGGTAAATACTCAGCATTTGCATTT 58.963 34.615 5.20 4.51 45.16 2.32
5855 6587 7.546667 CAGGTAAATACTCAGCATTTGCATTTT 59.453 33.333 5.20 0.00 45.16 1.82
5856 6588 7.761249 AGGTAAATACTCAGCATTTGCATTTTC 59.239 33.333 5.20 0.55 45.16 2.29
5857 6589 7.545265 GGTAAATACTCAGCATTTGCATTTTCA 59.455 33.333 5.20 0.00 45.16 2.69
5858 6590 9.090692 GTAAATACTCAGCATTTGCATTTTCAT 57.909 29.630 5.20 0.00 45.16 2.57
5859 6591 8.556213 AAATACTCAGCATTTGCATTTTCATT 57.444 26.923 5.20 0.00 45.16 2.57
5860 6592 7.766219 ATACTCAGCATTTGCATTTTCATTC 57.234 32.000 5.20 0.00 45.16 2.67
5861 6593 5.543714 ACTCAGCATTTGCATTTTCATTCA 58.456 33.333 5.20 0.00 45.16 2.57
5862 6594 5.992829 ACTCAGCATTTGCATTTTCATTCAA 59.007 32.000 5.20 0.00 45.16 2.69
5863 6595 6.147164 ACTCAGCATTTGCATTTTCATTCAAG 59.853 34.615 5.20 0.00 45.16 3.02
5864 6596 5.992829 TCAGCATTTGCATTTTCATTCAAGT 59.007 32.000 5.20 0.00 45.16 3.16
5865 6597 6.483974 TCAGCATTTGCATTTTCATTCAAGTT 59.516 30.769 5.20 0.00 45.16 2.66
5866 6598 7.012515 TCAGCATTTGCATTTTCATTCAAGTTT 59.987 29.630 5.20 0.00 45.16 2.66
5867 6599 7.112844 CAGCATTTGCATTTTCATTCAAGTTTG 59.887 33.333 5.20 0.00 45.16 2.93
5868 6600 6.913673 GCATTTGCATTTTCATTCAAGTTTGT 59.086 30.769 0.00 0.00 41.59 2.83
5869 6601 7.112426 GCATTTGCATTTTCATTCAAGTTTGTC 59.888 33.333 0.00 0.00 41.59 3.18
5870 6602 5.886715 TGCATTTTCATTCAAGTTTGTCG 57.113 34.783 0.00 0.00 0.00 4.35
5871 6603 5.347342 TGCATTTTCATTCAAGTTTGTCGT 58.653 33.333 0.00 0.00 0.00 4.34
5872 6604 5.231779 TGCATTTTCATTCAAGTTTGTCGTG 59.768 36.000 0.00 0.00 0.00 4.35
5873 6605 5.659426 CATTTTCATTCAAGTTTGTCGTGC 58.341 37.500 0.00 0.00 0.00 5.34
5874 6606 4.362932 TTTCATTCAAGTTTGTCGTGCA 57.637 36.364 0.00 0.00 0.00 4.57
5875 6607 4.362932 TTCATTCAAGTTTGTCGTGCAA 57.637 36.364 0.00 0.00 34.87 4.08
5876 6608 3.951306 TCATTCAAGTTTGTCGTGCAAG 58.049 40.909 0.00 0.00 38.47 4.01
5877 6609 3.625313 TCATTCAAGTTTGTCGTGCAAGA 59.375 39.130 0.00 0.00 38.47 3.02
5878 6610 4.095632 TCATTCAAGTTTGTCGTGCAAGAA 59.904 37.500 3.20 0.00 38.47 2.52
5879 6611 4.427096 TTCAAGTTTGTCGTGCAAGAAA 57.573 36.364 3.20 0.00 38.47 2.52
5880 6612 4.427096 TCAAGTTTGTCGTGCAAGAAAA 57.573 36.364 3.20 1.81 38.47 2.29
5881 6613 4.799678 TCAAGTTTGTCGTGCAAGAAAAA 58.200 34.783 13.21 13.21 38.47 1.94
5907 6692 3.288242 GCATGCGTTTAATGGACATACG 58.712 45.455 0.00 2.63 35.48 3.06
5978 6772 6.154445 AGAAAGCTGATTGCAATTGTTACTG 58.846 36.000 14.33 5.57 45.94 2.74
6073 6878 6.989659 AGGCAATTTAAATGCATCCAGATAG 58.010 36.000 18.16 0.00 45.60 2.08
6293 7100 3.343617 TCTAATGGCTCCAACCTTTTCG 58.656 45.455 0.00 0.00 0.00 3.46
6506 7313 2.912956 TCCTCTTGCACTTGGTATCCTT 59.087 45.455 0.00 0.00 0.00 3.36
6573 7380 4.508461 TGAATTTGTGCCTGATCAGTTG 57.492 40.909 21.11 8.21 0.00 3.16
6617 7426 9.846248 GTTCATTAGAATGCAATGTTTAACTCT 57.154 29.630 0.00 0.00 35.92 3.24
6666 7475 7.398332 AAGCAAAACATTTTGATCCTATCTCCT 59.602 33.333 18.91 2.08 44.98 3.69
6693 7503 4.036518 AGATAGAGATTGCTGGTCCTTGT 58.963 43.478 0.00 0.00 0.00 3.16
6697 7509 4.218312 AGAGATTGCTGGTCCTTGTTTTT 58.782 39.130 0.00 0.00 0.00 1.94
6755 7571 8.801715 ATAGTGTAACAAAACTGCAATCAAAG 57.198 30.769 0.00 0.00 41.43 2.77
6756 7572 5.519927 AGTGTAACAAAACTGCAATCAAAGC 59.480 36.000 0.00 0.00 41.43 3.51
6757 7573 5.290643 GTGTAACAAAACTGCAATCAAAGCA 59.709 36.000 0.00 0.00 36.74 3.91
6759 7575 4.127566 ACAAAACTGCAATCAAAGCACT 57.872 36.364 0.00 0.00 37.02 4.40
6760 7576 4.506758 ACAAAACTGCAATCAAAGCACTT 58.493 34.783 0.00 0.00 37.02 3.16
6761 7577 4.567959 ACAAAACTGCAATCAAAGCACTTC 59.432 37.500 0.00 0.00 37.02 3.01
6945 7769 3.058846 GTCATGATGCAGATGCTGATGTC 60.059 47.826 0.00 0.83 42.66 3.06
6984 7808 9.794719 ACTTCTTAACCTAGCAGTTAATTTCTT 57.205 29.630 7.06 0.00 40.46 2.52
7179 8004 2.945668 CTCCTTTAGCATCCTTTTCCCG 59.054 50.000 0.00 0.00 0.00 5.14
7355 8180 6.034044 CGTGAGTTAACTATCTTCAAGCACTC 59.966 42.308 8.42 0.00 0.00 3.51
7401 8226 5.105635 TGGATTCATCTGACAATTCCTTTGC 60.106 40.000 0.00 0.00 39.03 3.68
7795 8626 2.479837 TGGCGACTGACAAGTAAGTTG 58.520 47.619 1.13 1.13 42.48 3.16
7867 8702 0.034574 ACCACTGTTGCCTTGTGTCA 60.035 50.000 0.00 0.00 0.00 3.58
8069 8922 3.196469 TGCTGGTGTTTCATCCAAAAACA 59.804 39.130 0.00 0.00 42.63 2.83
8360 9214 6.855836 ACAATGTTATGTCAGCAGTTAATGG 58.144 36.000 0.00 0.00 0.00 3.16
8372 9226 2.749076 CAGTTAATGGCTTGCTGTGCTA 59.251 45.455 0.00 0.00 0.00 3.49
8373 9227 2.749621 AGTTAATGGCTTGCTGTGCTAC 59.250 45.455 0.00 0.00 0.00 3.58
8374 9228 2.487762 GTTAATGGCTTGCTGTGCTACA 59.512 45.455 0.00 0.00 0.00 2.74
8377 9231 2.488204 TGGCTTGCTGTGCTACATTA 57.512 45.000 0.00 0.00 0.00 1.90
8382 9236 3.609807 GCTTGCTGTGCTACATTAAAAGC 59.390 43.478 0.00 0.00 39.25 3.51
8423 9277 3.863424 ACGTTATTCAGTTGCTGATACGG 59.137 43.478 21.18 11.27 40.39 4.02
8441 9295 8.075593 TGATACGGTTACAGTTTCAACTAAAC 57.924 34.615 6.36 7.90 46.61 2.01
8463 9338 2.153401 AACCTGGCCTGGCACTGTA 61.153 57.895 27.51 0.00 0.00 2.74
8502 9377 1.015109 GTGCACTGCATCATCAGGAG 58.985 55.000 10.32 0.00 41.91 3.69
8516 9391 0.528033 CAGGAGTGAGCTGAGCATCG 60.528 60.000 7.39 0.00 38.61 3.84
8531 9406 2.702898 CATCGTTGCAACACCATTCA 57.297 45.000 28.01 3.99 0.00 2.57
8532 9407 3.010624 CATCGTTGCAACACCATTCAA 57.989 42.857 28.01 4.23 0.00 2.69
8533 9408 3.379240 CATCGTTGCAACACCATTCAAA 58.621 40.909 28.01 3.24 0.00 2.69
8534 9409 3.077229 TCGTTGCAACACCATTCAAAG 57.923 42.857 28.01 8.71 0.00 2.77
8535 9410 2.126467 CGTTGCAACACCATTCAAAGG 58.874 47.619 28.01 4.46 0.00 3.11
8536 9411 2.482864 GTTGCAACACCATTCAAAGGG 58.517 47.619 24.52 0.00 35.59 3.95
8537 9412 1.047002 TGCAACACCATTCAAAGGGG 58.953 50.000 0.00 0.00 33.25 4.79
8538 9413 1.337118 GCAACACCATTCAAAGGGGA 58.663 50.000 0.00 0.00 33.25 4.81
8541 9416 3.865684 GCAACACCATTCAAAGGGGATTG 60.866 47.826 0.00 3.56 34.17 2.67
8543 9418 2.111613 ACACCATTCAAAGGGGATTGGA 59.888 45.455 10.16 0.00 39.53 3.53
8544 9419 3.172339 CACCATTCAAAGGGGATTGGAA 58.828 45.455 10.16 0.00 39.53 3.53
8545 9420 3.196254 CACCATTCAAAGGGGATTGGAAG 59.804 47.826 10.16 1.05 39.53 3.46
8546 9421 3.077391 ACCATTCAAAGGGGATTGGAAGA 59.923 43.478 10.16 0.00 39.53 2.87
8547 9422 3.703052 CCATTCAAAGGGGATTGGAAGAG 59.297 47.826 0.00 0.00 39.53 2.85
8548 9423 4.570505 CCATTCAAAGGGGATTGGAAGAGA 60.571 45.833 0.00 0.00 39.53 3.10
8549 9424 4.953781 TTCAAAGGGGATTGGAAGAGAT 57.046 40.909 0.00 0.00 0.00 2.75
8550 9425 4.240881 TCAAAGGGGATTGGAAGAGATG 57.759 45.455 0.00 0.00 0.00 2.90
8551 9426 3.053395 TCAAAGGGGATTGGAAGAGATGG 60.053 47.826 0.00 0.00 0.00 3.51
8552 9427 1.527457 AGGGGATTGGAAGAGATGGG 58.473 55.000 0.00 0.00 0.00 4.00
8553 9428 1.011293 AGGGGATTGGAAGAGATGGGA 59.989 52.381 0.00 0.00 0.00 4.37
8554 9429 1.852965 GGGGATTGGAAGAGATGGGAA 59.147 52.381 0.00 0.00 0.00 3.97
8555 9430 2.448577 GGGGATTGGAAGAGATGGGAAT 59.551 50.000 0.00 0.00 0.00 3.01
8580 9455 2.043115 GAGGGATTTTTGGAGGGGACTT 59.957 50.000 0.00 0.00 44.43 3.01
8599 9506 4.225497 CCTGTTCGGCAATCCTCC 57.775 61.111 0.00 0.00 0.00 4.30
8627 9534 2.121948 CTCCCACTCCTCAATCCATCA 58.878 52.381 0.00 0.00 0.00 3.07
8629 9536 3.125656 TCCCACTCCTCAATCCATCATT 58.874 45.455 0.00 0.00 0.00 2.57
8649 9556 1.059098 TGAGGCAGAAAAGGAGCTGA 58.941 50.000 0.00 0.00 34.06 4.26
8662 9569 2.817396 GCTGAGGAGCGCCACTTC 60.817 66.667 9.88 5.51 34.87 3.01
8663 9570 2.125350 CTGAGGAGCGCCACTTCC 60.125 66.667 9.88 4.11 36.29 3.46
8664 9571 2.922503 TGAGGAGCGCCACTTCCA 60.923 61.111 15.05 1.80 36.29 3.53
8667 9574 2.032681 GGAGCGCCACTTCCACTT 59.967 61.111 2.29 0.00 0.00 3.16
8668 9575 2.035442 GGAGCGCCACTTCCACTTC 61.035 63.158 2.29 0.00 0.00 3.01
8670 9577 3.056328 GCGCCACTTCCACTTCCC 61.056 66.667 0.00 0.00 0.00 3.97
8671 9578 2.750350 CGCCACTTCCACTTCCCT 59.250 61.111 0.00 0.00 0.00 4.20
8673 9580 1.376037 GCCACTTCCACTTCCCTCG 60.376 63.158 0.00 0.00 0.00 4.63
8674 9581 1.376037 CCACTTCCACTTCCCTCGC 60.376 63.158 0.00 0.00 0.00 5.03
8675 9582 1.674057 CACTTCCACTTCCCTCGCT 59.326 57.895 0.00 0.00 0.00 4.93
8676 9583 0.390472 CACTTCCACTTCCCTCGCTC 60.390 60.000 0.00 0.00 0.00 5.03
8678 9585 2.564553 CTTCCACTTCCCTCGCTCCG 62.565 65.000 0.00 0.00 0.00 4.63
8680 9587 2.125912 CACTTCCCTCGCTCCGTG 60.126 66.667 0.00 0.00 0.00 4.94
8681 9588 3.382832 ACTTCCCTCGCTCCGTGG 61.383 66.667 0.00 0.00 39.77 4.94
8687 9597 2.711922 CCTCGCTCCGTGGTAGCTT 61.712 63.158 0.00 0.00 37.85 3.74
8694 9604 2.261671 CGTGGTAGCTTGCTCCGT 59.738 61.111 0.00 0.00 0.00 4.69
8705 9615 3.512516 GCTCCGTTCCATGCTGCC 61.513 66.667 0.00 0.00 0.00 4.85
8726 9636 2.647356 CTCCGCGGAGATATCTGGT 58.353 57.895 45.28 0.00 44.53 4.00
8728 9638 0.959553 TCCGCGGAGATATCTGGTTC 59.040 55.000 27.28 0.00 0.00 3.62
8729 9639 0.387367 CCGCGGAGATATCTGGTTCG 60.387 60.000 24.07 9.56 0.00 3.95
8730 9640 0.387367 CGCGGAGATATCTGGTTCGG 60.387 60.000 10.74 1.59 0.00 4.30
8731 9641 0.038159 GCGGAGATATCTGGTTCGGG 60.038 60.000 10.74 0.00 0.00 5.14
8732 9642 1.329256 CGGAGATATCTGGTTCGGGT 58.671 55.000 10.74 0.00 0.00 5.28
8734 9644 2.545952 CGGAGATATCTGGTTCGGGTTG 60.546 54.545 10.74 0.00 0.00 3.77
8736 9646 3.458189 GAGATATCTGGTTCGGGTTGTG 58.542 50.000 10.74 0.00 0.00 3.33
8737 9647 2.170607 AGATATCTGGTTCGGGTTGTGG 59.829 50.000 3.89 0.00 0.00 4.17
8739 9649 0.324943 ATCTGGTTCGGGTTGTGGAG 59.675 55.000 0.00 0.00 0.00 3.86
8741 9651 0.884704 CTGGTTCGGGTTGTGGAGTG 60.885 60.000 0.00 0.00 0.00 3.51
8742 9652 1.599797 GGTTCGGGTTGTGGAGTGG 60.600 63.158 0.00 0.00 0.00 4.00
8743 9653 1.448497 GTTCGGGTTGTGGAGTGGA 59.552 57.895 0.00 0.00 0.00 4.02
8744 9654 0.602905 GTTCGGGTTGTGGAGTGGAG 60.603 60.000 0.00 0.00 0.00 3.86
8745 9655 1.052124 TTCGGGTTGTGGAGTGGAGT 61.052 55.000 0.00 0.00 0.00 3.85
8746 9656 1.004918 CGGGTTGTGGAGTGGAGTC 60.005 63.158 0.00 0.00 0.00 3.36
8747 9657 1.375326 GGGTTGTGGAGTGGAGTCC 59.625 63.158 0.73 0.73 37.10 3.85
8748 9658 1.375326 GGTTGTGGAGTGGAGTCCC 59.625 63.158 6.74 0.00 35.49 4.46
8750 9660 0.321996 GTTGTGGAGTGGAGTCCCTC 59.678 60.000 15.66 15.66 35.49 4.30
8759 9669 3.534721 GGAGTCCCTCCGAAAAGTG 57.465 57.895 0.00 0.00 41.08 3.16
8761 9671 1.608283 GGAGTCCCTCCGAAAAGTGTG 60.608 57.143 0.00 0.00 41.08 3.82
8762 9672 1.070289 GAGTCCCTCCGAAAAGTGTGT 59.930 52.381 0.00 0.00 0.00 3.72
8763 9673 1.489230 AGTCCCTCCGAAAAGTGTGTT 59.511 47.619 0.00 0.00 0.00 3.32
8764 9674 2.092592 AGTCCCTCCGAAAAGTGTGTTT 60.093 45.455 0.00 0.00 0.00 2.83
8827 9746 2.955607 GCTTTTGCAAACCAATGAGC 57.044 45.000 12.39 13.21 46.58 4.26
8828 9747 2.211806 GCTTTTGCAAACCAATGAGCA 58.788 42.857 20.86 1.17 46.58 4.26
8829 9748 2.032636 GCTTTTGCAAACCAATGAGCAC 60.033 45.455 20.86 0.00 46.58 4.40
8830 9749 2.975732 TTTGCAAACCAATGAGCACA 57.024 40.000 8.05 0.00 36.62 4.57
8831 9750 2.975732 TTGCAAACCAATGAGCACAA 57.024 40.000 0.00 0.00 36.62 3.33
8832 9751 2.222007 TGCAAACCAATGAGCACAAC 57.778 45.000 0.00 0.00 31.05 3.32
8833 9752 1.755959 TGCAAACCAATGAGCACAACT 59.244 42.857 0.00 0.00 31.05 3.16
8834 9753 2.223782 TGCAAACCAATGAGCACAACTC 60.224 45.455 0.00 0.00 46.45 3.01
8850 9769 4.787551 ACAACTCATGTGGGTAAACAAGA 58.212 39.130 0.00 0.00 41.93 3.02
8851 9770 5.197451 ACAACTCATGTGGGTAAACAAGAA 58.803 37.500 0.00 0.00 41.93 2.52
8852 9771 5.654650 ACAACTCATGTGGGTAAACAAGAAA 59.345 36.000 0.00 0.00 41.93 2.52
8853 9772 5.767816 ACTCATGTGGGTAAACAAGAAAC 57.232 39.130 0.00 0.00 32.81 2.78
8854 9773 4.583073 ACTCATGTGGGTAAACAAGAAACC 59.417 41.667 0.00 0.00 32.81 3.27
8855 9774 4.537751 TCATGTGGGTAAACAAGAAACCA 58.462 39.130 0.00 0.00 34.83 3.67
8856 9775 4.339814 TCATGTGGGTAAACAAGAAACCAC 59.660 41.667 2.56 2.56 46.40 4.16
8857 9776 3.970842 TGTGGGTAAACAAGAAACCACT 58.029 40.909 10.62 0.00 46.37 4.00
8858 9777 5.113446 TGTGGGTAAACAAGAAACCACTA 57.887 39.130 10.62 0.00 46.37 2.74
8862 9781 7.143340 GTGGGTAAACAAGAAACCACTAATTC 58.857 38.462 2.30 0.00 43.70 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.822371 CGTAAATGGGAAAAGGTGGGG 59.178 52.381 0.00 0.00 0.00 4.96
50 51 3.466836 TGAGAGACACAATTTTGCTCGT 58.533 40.909 9.08 0.00 0.00 4.18
95 97 2.069776 CTGTGCCTCAGGGAAAGGA 58.930 57.895 0.00 0.00 40.23 3.36
167 174 1.371558 GTGCCTCTCGGAAAGTGGT 59.628 57.895 0.00 0.00 40.23 4.16
245 263 6.146021 CCACTCGGAAAGGAAAAATCAATTTG 59.854 38.462 0.00 0.00 0.00 2.32
250 268 2.556622 GCCACTCGGAAAGGAAAAATCA 59.443 45.455 0.00 0.00 0.00 2.57
252 270 2.296190 GTGCCACTCGGAAAGGAAAAAT 59.704 45.455 0.00 0.00 0.00 1.82
257 275 0.036388 GATGTGCCACTCGGAAAGGA 60.036 55.000 0.00 0.00 0.00 3.36
268 286 1.523154 GGTTTGCTTCCGATGTGCCA 61.523 55.000 0.00 0.00 0.00 4.92
275 293 1.896660 GGCACAGGTTTGCTTCCGA 60.897 57.895 0.00 0.00 42.56 4.55
374 393 6.059484 TCCGGATTTTAGAATTTATTCGGCT 58.941 36.000 0.00 0.00 41.56 5.52
375 394 6.308371 TCCGGATTTTAGAATTTATTCGGC 57.692 37.500 0.00 0.00 41.56 5.54
377 396 8.403236 ACCTTTCCGGATTTTAGAATTTATTCG 58.597 33.333 4.15 0.00 37.94 3.34
385 413 9.962809 TTTCTTATACCTTTCCGGATTTTAGAA 57.037 29.630 4.15 4.30 36.31 2.10
408 436 5.420366 GCGTTTTCTCGGAATTTTGTTTTC 58.580 37.500 0.00 0.00 0.00 2.29
419 447 1.227704 TGCTTGGCGTTTTCTCGGA 60.228 52.632 0.00 0.00 0.00 4.55
422 450 0.657368 CGTGTGCTTGGCGTTTTCTC 60.657 55.000 0.00 0.00 0.00 2.87
425 453 1.063488 GTCGTGTGCTTGGCGTTTT 59.937 52.632 0.00 0.00 0.00 2.43
445 473 2.202756 CTCTCAACCGCCGCTACC 60.203 66.667 0.00 0.00 0.00 3.18
456 484 1.538204 GGTCACTTGACACGCTCTCAA 60.538 52.381 11.40 0.00 46.47 3.02
532 560 1.531423 TCCGTCGAGAGCAACTAACT 58.469 50.000 0.00 0.00 0.00 2.24
538 566 0.382158 CTAGCATCCGTCGAGAGCAA 59.618 55.000 0.00 0.00 0.00 3.91
568 596 3.262915 AGGTGAATGCTACTTCTTGCTCT 59.737 43.478 0.00 0.00 0.00 4.09
569 597 3.604582 AGGTGAATGCTACTTCTTGCTC 58.395 45.455 0.00 0.00 0.00 4.26
589 617 3.213402 GAGAGGAGCCCGTCGGAG 61.213 72.222 14.39 3.94 32.77 4.63
631 949 8.506437 CGCTCAAAATATTAATGATAGAAGGCA 58.494 33.333 0.00 0.00 0.00 4.75
632 950 8.507249 ACGCTCAAAATATTAATGATAGAAGGC 58.493 33.333 0.00 3.76 0.00 4.35
641 959 9.382244 GGCTAGTTTACGCTCAAAATATTAATG 57.618 33.333 0.00 0.00 0.00 1.90
642 960 8.565416 GGGCTAGTTTACGCTCAAAATATTAAT 58.435 33.333 0.00 0.00 0.00 1.40
644 962 7.049133 TGGGCTAGTTTACGCTCAAAATATTA 58.951 34.615 0.00 0.00 32.86 0.98
645 963 5.883673 TGGGCTAGTTTACGCTCAAAATATT 59.116 36.000 0.00 0.00 32.86 1.28
663 1026 1.274167 CGGCCGAATAGTAATGGGCTA 59.726 52.381 24.07 0.00 44.29 3.93
708 1071 1.609320 GCCCTTGGACTCTCTGTTGTC 60.609 57.143 0.00 0.00 0.00 3.18
712 1075 2.286523 CGGCCCTTGGACTCTCTGT 61.287 63.158 0.00 0.00 0.00 3.41
713 1076 2.581354 CGGCCCTTGGACTCTCTG 59.419 66.667 0.00 0.00 0.00 3.35
714 1077 2.685380 CCGGCCCTTGGACTCTCT 60.685 66.667 0.00 0.00 0.00 3.10
715 1078 2.683933 TCCGGCCCTTGGACTCTC 60.684 66.667 0.00 0.00 0.00 3.20
812 1177 2.225467 GCTTTGCTTGAGAGTTGGAGT 58.775 47.619 0.00 0.00 0.00 3.85
822 1188 0.392998 GGGATCTCCGCTTTGCTTGA 60.393 55.000 0.00 0.00 36.71 3.02
860 1232 1.273609 GGGGTTTATTTTCTGGGGGCT 60.274 52.381 0.00 0.00 0.00 5.19
861 1233 1.200519 GGGGTTTATTTTCTGGGGGC 58.799 55.000 0.00 0.00 0.00 5.80
864 1236 2.236146 GCTTGGGGGTTTATTTTCTGGG 59.764 50.000 0.00 0.00 0.00 4.45
883 1263 4.731612 CAGACTCGCGGTGCTGCT 62.732 66.667 6.13 0.00 0.00 4.24
902 1282 4.824166 CGGTGCGGTCGTACGGAG 62.824 72.222 16.52 8.22 34.05 4.63
919 1304 3.699134 CTAGGGTTCGGGGGCAAGC 62.699 68.421 0.00 0.00 0.00 4.01
922 1307 3.320411 TAGCTAGGGTTCGGGGGCA 62.320 63.158 0.00 0.00 0.00 5.36
939 1325 4.152964 CGCTGCTGGCAGGCTCTA 62.153 66.667 21.76 0.00 43.77 2.43
1209 1612 4.740822 AACACATCAGGCGGGGGC 62.741 66.667 0.00 0.00 0.00 5.80
1210 1613 1.184970 AAAAACACATCAGGCGGGGG 61.185 55.000 0.00 0.00 0.00 5.40
1428 1838 4.430423 GAACAAGCAGCCGACGCG 62.430 66.667 3.53 3.53 41.18 6.01
1477 1887 1.336440 CTAGAGCCAGTCCACTCATCG 59.664 57.143 0.00 0.00 35.28 3.84
1487 1897 2.291856 GGCCAGAACTAGAGCCAGT 58.708 57.895 0.00 0.00 45.07 4.00
1509 1919 6.374894 GGTTCGTCAGGTAGATGTAGCTATAT 59.625 42.308 2.14 2.14 35.13 0.86
1510 1920 5.704515 GGTTCGTCAGGTAGATGTAGCTATA 59.295 44.000 0.70 0.00 35.13 1.31
1511 1921 4.519730 GGTTCGTCAGGTAGATGTAGCTAT 59.480 45.833 0.70 0.00 35.13 2.97
1519 1929 3.067742 CCGTAATGGTTCGTCAGGTAGAT 59.932 47.826 0.00 0.00 0.00 1.98
1539 1949 1.169577 ACTAGAGTGACAGCAGTCCG 58.830 55.000 6.80 0.00 44.00 4.79
1541 1951 3.738282 CACAAACTAGAGTGACAGCAGTC 59.262 47.826 1.64 1.64 45.19 3.51
1672 2084 2.493278 CCAAAGCCTACACATTCAAGGG 59.507 50.000 0.00 0.00 0.00 3.95
1786 2198 2.368548 TCTCAGTGGCAGCTAACAGAAA 59.631 45.455 0.00 0.00 0.00 2.52
1819 2231 2.899339 GCGAATCTCCTGCCTGGC 60.899 66.667 12.87 12.87 35.26 4.85
1951 2363 5.235616 CGTACAACAAAGGTGTGAGTGTAAT 59.764 40.000 0.00 0.00 38.27 1.89
1965 2377 9.053840 TCAGTATTTAAATCACCGTACAACAAA 57.946 29.630 3.39 0.00 0.00 2.83
1966 2378 8.604640 TCAGTATTTAAATCACCGTACAACAA 57.395 30.769 3.39 0.00 0.00 2.83
1974 2386 7.516785 CGTCCAGAATCAGTATTTAAATCACCG 60.517 40.741 3.39 0.00 0.00 4.94
2000 2414 9.458374 AAACAGTTGTGTTGTTATATTAGCAAC 57.542 29.630 7.15 7.15 46.68 4.17
2006 2420 8.194104 TCTGCAAAACAGTTGTGTTGTTATATT 58.806 29.630 14.75 0.00 46.68 1.28
2055 2469 1.956477 GACATTGTCAAGGCCAACACT 59.044 47.619 11.93 0.00 32.09 3.55
2088 2502 0.820891 CATGGCAGGCACATACCCTC 60.821 60.000 0.00 0.00 0.00 4.30
2123 2537 6.961554 CACGCTGAAAGGTATAAAACTGAATC 59.038 38.462 0.00 0.00 0.00 2.52
2133 2547 5.116180 CCTCAATTCACGCTGAAAGGTATA 58.884 41.667 4.87 0.00 40.12 1.47
2164 2578 4.357918 AAAGGCAGAGCAACTCTTAAGA 57.642 40.909 4.81 4.81 38.99 2.10
2350 2784 7.806180 AGGCAGACATGAACTAAATACCTAAT 58.194 34.615 0.00 0.00 0.00 1.73
2369 2803 9.905713 ATTTCACTTTTACATCTATAAGGCAGA 57.094 29.630 0.00 0.00 0.00 4.26
2386 2820 9.764363 GGAAGGAAAGAAACAATATTTCACTTT 57.236 29.630 2.51 0.00 35.18 2.66
2387 2821 8.923270 TGGAAGGAAAGAAACAATATTTCACTT 58.077 29.630 2.51 0.00 35.18 3.16
2388 2822 8.477419 TGGAAGGAAAGAAACAATATTTCACT 57.523 30.769 2.51 0.00 35.18 3.41
2389 2823 9.196552 CTTGGAAGGAAAGAAACAATATTTCAC 57.803 33.333 2.51 0.00 35.18 3.18
2390 2824 9.142014 TCTTGGAAGGAAAGAAACAATATTTCA 57.858 29.630 2.51 0.00 35.18 2.69
2391 2825 9.631452 CTCTTGGAAGGAAAGAAACAATATTTC 57.369 33.333 0.00 0.00 33.40 2.17
2392 2826 9.147732 ACTCTTGGAAGGAAAGAAACAATATTT 57.852 29.630 0.00 0.00 33.40 1.40
2393 2827 8.712228 ACTCTTGGAAGGAAAGAAACAATATT 57.288 30.769 0.00 0.00 33.40 1.28
2394 2828 8.712228 AACTCTTGGAAGGAAAGAAACAATAT 57.288 30.769 0.00 0.00 33.40 1.28
2395 2829 7.998964 AGAACTCTTGGAAGGAAAGAAACAATA 59.001 33.333 0.00 0.00 33.40 1.90
2396 2830 6.836007 AGAACTCTTGGAAGGAAAGAAACAAT 59.164 34.615 0.00 0.00 33.40 2.71
2397 2831 6.095440 CAGAACTCTTGGAAGGAAAGAAACAA 59.905 38.462 0.00 0.00 33.40 2.83
2398 2832 5.590259 CAGAACTCTTGGAAGGAAAGAAACA 59.410 40.000 0.00 0.00 33.40 2.83
2399 2833 5.590663 ACAGAACTCTTGGAAGGAAAGAAAC 59.409 40.000 0.00 0.00 33.40 2.78
2400 2834 5.755849 ACAGAACTCTTGGAAGGAAAGAAA 58.244 37.500 0.00 0.00 33.40 2.52
2401 2835 5.373812 ACAGAACTCTTGGAAGGAAAGAA 57.626 39.130 0.00 0.00 33.40 2.52
2402 2836 5.373812 AACAGAACTCTTGGAAGGAAAGA 57.626 39.130 0.00 0.00 32.80 2.52
2403 2837 5.358160 ACAAACAGAACTCTTGGAAGGAAAG 59.642 40.000 0.00 0.00 0.00 2.62
2404 2838 5.261216 ACAAACAGAACTCTTGGAAGGAAA 58.739 37.500 0.00 0.00 0.00 3.13
2405 2839 4.855340 ACAAACAGAACTCTTGGAAGGAA 58.145 39.130 0.00 0.00 0.00 3.36
2409 2843 6.264518 GGGAATAACAAACAGAACTCTTGGAA 59.735 38.462 0.00 0.00 0.00 3.53
2415 2849 6.262273 TGAAGTGGGAATAACAAACAGAACTC 59.738 38.462 0.00 0.00 0.00 3.01
2522 2962 7.092891 ACAGTCATAGGAATAGACCATGTTGAA 60.093 37.037 0.00 0.00 32.82 2.69
2542 2982 6.169557 ACAACTACCTCATTGTAACAGTCA 57.830 37.500 0.00 0.00 37.27 3.41
2583 3023 6.601613 TCAATATATGTCCACCACAAGGAAAC 59.398 38.462 0.00 0.00 38.97 2.78
2584 3024 6.726379 TCAATATATGTCCACCACAAGGAAA 58.274 36.000 0.00 0.00 38.97 3.13
2591 3031 7.686438 TGCATAATCAATATATGTCCACCAC 57.314 36.000 0.00 0.00 34.06 4.16
2699 3301 6.795399 CAACAATGTATTGGATACTTGGTCC 58.205 40.000 9.22 0.00 41.96 4.46
2753 3390 7.255451 GGTTTCAGTAGAATCCAACAATTGTGA 60.255 37.037 12.82 6.46 41.35 3.58
2877 3514 2.035066 GGAGCAAAAAGAGCAAAGCAGA 59.965 45.455 0.00 0.00 0.00 4.26
3013 3655 8.430801 AGTTGAAGTAAATCACTCATAGCATC 57.569 34.615 0.00 0.00 36.04 3.91
3116 3761 4.221703 AGCAGCTTTTAGAGAACTAGAGCA 59.778 41.667 0.00 0.00 39.64 4.26
3151 3796 4.258457 AGGTGAATACTAGAGACTGCCT 57.742 45.455 0.00 0.00 0.00 4.75
3170 3815 3.378112 TCACAACTCAAAGTGCTCAAAGG 59.622 43.478 0.00 0.00 35.76 3.11
3321 3990 9.698309 TGACAACTAAAATTCAAACTTTGACAA 57.302 25.926 3.56 0.00 39.87 3.18
3322 3991 9.698309 TTGACAACTAAAATTCAAACTTTGACA 57.302 25.926 3.56 0.00 39.87 3.58
3418 4113 8.236586 GCAGTGAGTAATAAACAAATGTGATCA 58.763 33.333 0.00 0.00 0.00 2.92
3694 4390 8.719648 TCAATGCATCACCACAAAATTATTTTC 58.280 29.630 0.00 0.00 0.00 2.29
3834 4530 8.880244 AGTATATCCATTGGTGAATAGCTACAA 58.120 33.333 1.86 0.00 0.00 2.41
4013 4711 7.392673 AGAAACAATTTAGAGAGATGTGCACAT 59.607 33.333 31.82 31.82 39.70 3.21
4163 4861 3.818210 GCGTATCATCTGGAGAAGAGAGA 59.182 47.826 0.00 0.00 38.67 3.10
4167 4865 3.998099 CAGCGTATCATCTGGAGAAGA 57.002 47.619 0.00 0.00 39.94 2.87
4453 5151 4.431158 AGAGGTAAAGGGAGGGAAAGTA 57.569 45.455 0.00 0.00 0.00 2.24
4454 5152 3.293215 AGAGGTAAAGGGAGGGAAAGT 57.707 47.619 0.00 0.00 0.00 2.66
4469 5167 0.494095 AGAGGGAGGTGGAAAGAGGT 59.506 55.000 0.00 0.00 0.00 3.85
4487 5185 7.232118 ACCAAGGTAAGGAATCAAAATTCAG 57.768 36.000 0.00 0.00 42.66 3.02
4966 5677 8.299570 ACAAACTTAATATTCACTCTTGCCTTG 58.700 33.333 0.00 0.00 0.00 3.61
4967 5678 8.409358 ACAAACTTAATATTCACTCTTGCCTT 57.591 30.769 0.00 0.00 0.00 4.35
5043 5758 0.396811 ACCAGTTTCCAGAAGACCCG 59.603 55.000 0.00 0.00 0.00 5.28
5371 6087 9.288576 CAGAACTTGCATAATATCAAATAGGGA 57.711 33.333 0.00 0.00 0.00 4.20
5411 6143 0.250901 AGCGAGTGCCTGGAAACAAT 60.251 50.000 0.00 0.00 44.31 2.71
5427 6159 4.527509 AACATACTCCATGAGGATAGCG 57.472 45.455 0.00 0.00 44.70 4.26
5538 6270 4.851558 GGTAAAAACAGACAATAGCAAGCG 59.148 41.667 0.00 0.00 0.00 4.68
5618 6350 6.014156 GGTCTCCCAATATAGCTGATAGTTGT 60.014 42.308 0.00 0.00 0.00 3.32
5803 6535 3.716353 TCCAAGATATAGAAGGCCAAGCA 59.284 43.478 5.01 0.00 0.00 3.91
5848 6580 5.231779 CACGACAAACTTGAATGAAAATGCA 59.768 36.000 0.00 0.00 0.00 3.96
5849 6581 5.659426 CACGACAAACTTGAATGAAAATGC 58.341 37.500 0.00 0.00 0.00 3.56
5850 6582 5.231779 TGCACGACAAACTTGAATGAAAATG 59.768 36.000 0.00 0.00 0.00 2.32
5851 6583 5.347342 TGCACGACAAACTTGAATGAAAAT 58.653 33.333 0.00 0.00 0.00 1.82
5852 6584 4.738124 TGCACGACAAACTTGAATGAAAA 58.262 34.783 0.00 0.00 0.00 2.29
5853 6585 4.362932 TGCACGACAAACTTGAATGAAA 57.637 36.364 0.00 0.00 0.00 2.69
5854 6586 4.095632 TCTTGCACGACAAACTTGAATGAA 59.904 37.500 0.00 0.00 37.96 2.57
5855 6587 3.625313 TCTTGCACGACAAACTTGAATGA 59.375 39.130 0.00 0.00 37.96 2.57
5856 6588 3.951306 TCTTGCACGACAAACTTGAATG 58.049 40.909 0.00 0.00 37.96 2.67
5857 6589 4.630894 TTCTTGCACGACAAACTTGAAT 57.369 36.364 0.00 0.00 37.96 2.57
5858 6590 4.427096 TTTCTTGCACGACAAACTTGAA 57.573 36.364 0.00 0.00 37.96 2.69
5859 6591 4.427096 TTTTCTTGCACGACAAACTTGA 57.573 36.364 0.00 0.00 37.96 3.02
5878 6610 4.999950 TCCATTAAACGCATGCCAATTTTT 59.000 33.333 13.15 6.61 0.00 1.94
5879 6611 4.391523 GTCCATTAAACGCATGCCAATTTT 59.608 37.500 13.15 9.03 0.00 1.82
5880 6612 3.932089 GTCCATTAAACGCATGCCAATTT 59.068 39.130 13.15 12.65 0.00 1.82
5881 6613 3.056250 TGTCCATTAAACGCATGCCAATT 60.056 39.130 13.15 7.29 0.00 2.32
5882 6614 2.495270 TGTCCATTAAACGCATGCCAAT 59.505 40.909 13.15 3.97 0.00 3.16
5883 6615 1.889170 TGTCCATTAAACGCATGCCAA 59.111 42.857 13.15 1.50 0.00 4.52
5884 6616 1.539157 TGTCCATTAAACGCATGCCA 58.461 45.000 13.15 0.00 0.00 4.92
5885 6617 2.869233 ATGTCCATTAAACGCATGCC 57.131 45.000 13.15 0.00 0.00 4.40
5886 6618 3.001838 TCGTATGTCCATTAAACGCATGC 59.998 43.478 7.91 7.91 33.75 4.06
5887 6619 4.787381 TCGTATGTCCATTAAACGCATG 57.213 40.909 0.00 0.00 33.75 4.06
5888 6620 6.183360 ACAAATCGTATGTCCATTAAACGCAT 60.183 34.615 0.00 0.00 33.75 4.73
5907 6692 3.056891 TGGGCGAATCCTTGAAACAAATC 60.057 43.478 0.00 0.00 34.39 2.17
5978 6772 9.672086 TTAGCAACAACATAGTATGAAAACAAC 57.328 29.630 17.13 1.23 0.00 3.32
6073 6878 7.826690 TCCTGAAATAGTTCACCAAAATAAGC 58.173 34.615 0.56 0.00 38.88 3.09
6293 7100 5.314923 TCTGAACCTGCATTAAGAATTGC 57.685 39.130 0.00 0.00 0.00 3.56
6506 7313 3.512219 ACCTTGGGGTTCGAAATACAA 57.488 42.857 0.00 4.50 44.73 2.41
6550 7357 4.510038 ACTGATCAGGCACAAATTCAAC 57.490 40.909 26.08 0.00 0.00 3.18
6573 7380 1.739562 CCCTGCGACTCTTCACAGC 60.740 63.158 0.00 0.00 31.48 4.40
6590 7397 8.986477 AGTTAAACATTGCATTCTAATGAACC 57.014 30.769 6.87 0.00 38.70 3.62
6632 7441 8.825745 GGATCAAAATGTTTTGCTTTAAAGTGA 58.174 29.630 16.38 8.36 45.35 3.41
6633 7442 8.829612 AGGATCAAAATGTTTTGCTTTAAAGTG 58.170 29.630 16.38 3.37 45.35 3.16
6634 7443 8.962884 AGGATCAAAATGTTTTGCTTTAAAGT 57.037 26.923 16.38 0.00 45.35 2.66
6661 7470 6.009589 CAGCAATCTCTATCTTAGGAGGAGA 58.990 44.000 10.97 10.97 38.03 3.71
6662 7471 5.185635 CCAGCAATCTCTATCTTAGGAGGAG 59.814 48.000 0.00 2.54 0.00 3.69
6666 7475 4.835615 GGACCAGCAATCTCTATCTTAGGA 59.164 45.833 0.00 0.00 0.00 2.94
6744 7560 1.973138 CGGAAGTGCTTTGATTGCAG 58.027 50.000 0.00 0.00 41.41 4.41
6750 7566 0.465460 AACTGGCGGAAGTGCTTTGA 60.465 50.000 0.00 0.00 34.52 2.69
6751 7567 0.318107 CAACTGGCGGAAGTGCTTTG 60.318 55.000 0.00 0.00 34.52 2.77
6752 7568 0.751643 ACAACTGGCGGAAGTGCTTT 60.752 50.000 0.00 0.00 34.52 3.51
6754 7570 0.107831 TAACAACTGGCGGAAGTGCT 59.892 50.000 0.00 0.00 34.52 4.40
6755 7571 0.948678 TTAACAACTGGCGGAAGTGC 59.051 50.000 0.00 0.00 0.00 4.40
6756 7572 3.915437 AATTAACAACTGGCGGAAGTG 57.085 42.857 0.00 0.00 0.00 3.16
6757 7573 4.616953 CAAAATTAACAACTGGCGGAAGT 58.383 39.130 0.00 0.00 0.00 3.01
6759 7575 3.385577 GCAAAATTAACAACTGGCGGAA 58.614 40.909 0.00 0.00 0.00 4.30
6760 7576 2.288518 GGCAAAATTAACAACTGGCGGA 60.289 45.455 0.00 0.00 0.00 5.54
6761 7577 2.065512 GGCAAAATTAACAACTGGCGG 58.934 47.619 0.00 0.00 0.00 6.13
6945 7769 5.882557 AGGTTAAGAAGTGCATACCATTGAG 59.117 40.000 0.00 0.00 0.00 3.02
7179 8004 5.469479 CAATACAAACAGGAAACCACCATC 58.531 41.667 0.00 0.00 0.00 3.51
7355 8180 6.070309 TCCAACAATATTGGAAGGGGAAATTG 60.070 38.462 19.37 9.95 44.90 2.32
7401 8226 3.944015 CTCCAAGTGCCATCCTAAAAGAG 59.056 47.826 0.00 0.00 0.00 2.85
7507 8336 6.881065 AGTTATATACATACCTGCATTGCCAG 59.119 38.462 6.12 3.85 0.00 4.85
7698 8529 2.033927 GGTTATCGTCTTAGGTCGTCCC 59.966 54.545 0.00 0.00 0.00 4.46
7702 8533 1.598924 GCCGGTTATCGTCTTAGGTCG 60.599 57.143 1.90 0.00 37.11 4.79
7795 8626 2.165319 AAAGAACACGTGCCTAGTCC 57.835 50.000 17.22 0.00 0.00 3.85
7867 8702 2.234586 CAGGGGGATGTACCTGCAT 58.765 57.895 0.00 0.00 46.78 3.96
8069 8922 3.054361 AGCTCTGGTGGACGGAATAAAAT 60.054 43.478 0.00 0.00 33.08 1.82
8332 9186 5.420725 ACTGCTGACATAACATTGTAGGA 57.579 39.130 0.00 0.00 0.00 2.94
8333 9187 7.609760 TTAACTGCTGACATAACATTGTAGG 57.390 36.000 0.00 0.00 0.00 3.18
8334 9188 8.124823 CCATTAACTGCTGACATAACATTGTAG 58.875 37.037 0.00 0.00 0.00 2.74
8335 9189 7.415095 GCCATTAACTGCTGACATAACATTGTA 60.415 37.037 0.00 0.00 0.00 2.41
8336 9190 6.625740 GCCATTAACTGCTGACATAACATTGT 60.626 38.462 0.00 0.00 0.00 2.71
8337 9191 5.745294 GCCATTAACTGCTGACATAACATTG 59.255 40.000 0.00 0.00 0.00 2.82
8338 9192 5.653769 AGCCATTAACTGCTGACATAACATT 59.346 36.000 0.00 0.00 36.23 2.71
8360 9214 3.609807 GCTTTTAATGTAGCACAGCAAGC 59.390 43.478 0.00 0.00 37.35 4.01
8372 9226 4.396166 AGATAGCAGCAACGCTTTTAATGT 59.604 37.500 0.00 0.00 43.56 2.71
8373 9227 4.913376 AGATAGCAGCAACGCTTTTAATG 58.087 39.130 0.00 0.00 43.56 1.90
8374 9228 4.260375 CGAGATAGCAGCAACGCTTTTAAT 60.260 41.667 0.00 0.00 43.56 1.40
8377 9231 1.394917 CGAGATAGCAGCAACGCTTTT 59.605 47.619 0.00 0.00 43.56 2.27
8382 9236 2.035674 CGTAAACGAGATAGCAGCAACG 60.036 50.000 0.00 0.00 43.02 4.10
8441 9295 4.980702 TGCCAGGCCAGGTTGCAG 62.981 66.667 16.66 0.00 0.00 4.41
8490 9365 1.138464 TCAGCTCACTCCTGATGATGC 59.862 52.381 0.00 0.00 34.59 3.91
8516 9391 2.482864 CCCTTTGAATGGTGTTGCAAC 58.517 47.619 22.83 22.83 0.00 4.17
8524 9399 3.077391 TCTTCCAATCCCCTTTGAATGGT 59.923 43.478 0.00 0.00 36.78 3.55
8526 9401 4.603131 TCTCTTCCAATCCCCTTTGAATG 58.397 43.478 0.00 0.00 0.00 2.67
8527 9402 4.953781 TCTCTTCCAATCCCCTTTGAAT 57.046 40.909 0.00 0.00 0.00 2.57
8528 9403 4.570505 CCATCTCTTCCAATCCCCTTTGAA 60.571 45.833 0.00 0.00 0.00 2.69
8529 9404 3.053395 CCATCTCTTCCAATCCCCTTTGA 60.053 47.826 0.00 0.00 0.00 2.69
8530 9405 3.294214 CCATCTCTTCCAATCCCCTTTG 58.706 50.000 0.00 0.00 0.00 2.77
8531 9406 2.245806 CCCATCTCTTCCAATCCCCTTT 59.754 50.000 0.00 0.00 0.00 3.11
8532 9407 1.855599 CCCATCTCTTCCAATCCCCTT 59.144 52.381 0.00 0.00 0.00 3.95
8533 9408 1.011293 TCCCATCTCTTCCAATCCCCT 59.989 52.381 0.00 0.00 0.00 4.79
8534 9409 1.522900 TCCCATCTCTTCCAATCCCC 58.477 55.000 0.00 0.00 0.00 4.81
8535 9410 3.891805 ATTCCCATCTCTTCCAATCCC 57.108 47.619 0.00 0.00 0.00 3.85
8536 9411 4.343239 CCAAATTCCCATCTCTTCCAATCC 59.657 45.833 0.00 0.00 0.00 3.01
8537 9412 5.203528 TCCAAATTCCCATCTCTTCCAATC 58.796 41.667 0.00 0.00 0.00 2.67
8538 9413 5.206587 CTCCAAATTCCCATCTCTTCCAAT 58.793 41.667 0.00 0.00 0.00 3.16
8541 9416 3.560105 CCTCCAAATTCCCATCTCTTCC 58.440 50.000 0.00 0.00 0.00 3.46
8543 9418 3.201363 TCCCTCCAAATTCCCATCTCTT 58.799 45.455 0.00 0.00 0.00 2.85
8544 9419 2.863884 TCCCTCCAAATTCCCATCTCT 58.136 47.619 0.00 0.00 0.00 3.10
8545 9420 3.891805 ATCCCTCCAAATTCCCATCTC 57.108 47.619 0.00 0.00 0.00 2.75
8546 9421 4.632105 AAATCCCTCCAAATTCCCATCT 57.368 40.909 0.00 0.00 0.00 2.90
8547 9422 5.430886 CAAAAATCCCTCCAAATTCCCATC 58.569 41.667 0.00 0.00 0.00 3.51
8548 9423 4.227982 CCAAAAATCCCTCCAAATTCCCAT 59.772 41.667 0.00 0.00 0.00 4.00
8549 9424 3.586618 CCAAAAATCCCTCCAAATTCCCA 59.413 43.478 0.00 0.00 0.00 4.37
8550 9425 3.843619 TCCAAAAATCCCTCCAAATTCCC 59.156 43.478 0.00 0.00 0.00 3.97
8551 9426 4.080919 CCTCCAAAAATCCCTCCAAATTCC 60.081 45.833 0.00 0.00 0.00 3.01
8552 9427 4.080919 CCCTCCAAAAATCCCTCCAAATTC 60.081 45.833 0.00 0.00 0.00 2.17
8553 9428 3.845992 CCCTCCAAAAATCCCTCCAAATT 59.154 43.478 0.00 0.00 0.00 1.82
8554 9429 3.453868 CCCTCCAAAAATCCCTCCAAAT 58.546 45.455 0.00 0.00 0.00 2.32
8555 9430 2.494439 CCCCTCCAAAAATCCCTCCAAA 60.494 50.000 0.00 0.00 0.00 3.28
8591 9466 1.299773 GAGCTCGCTCGGAGGATTG 60.300 63.158 7.20 0.00 43.36 2.67
8599 9506 4.200283 GGAGTGGGAGCTCGCTCG 62.200 72.222 28.52 0.00 43.17 5.03
8605 9512 0.252881 TGGATTGAGGAGTGGGAGCT 60.253 55.000 0.00 0.00 0.00 4.09
8627 9534 2.824341 CAGCTCCTTTTCTGCCTCAAAT 59.176 45.455 0.00 0.00 0.00 2.32
8629 9536 1.421268 TCAGCTCCTTTTCTGCCTCAA 59.579 47.619 0.00 0.00 0.00 3.02
8649 9556 2.456287 GAAGTGGAAGTGGCGCTCCT 62.456 60.000 7.64 0.00 0.00 3.69
8662 9569 3.382832 ACGGAGCGAGGGAAGTGG 61.383 66.667 0.00 0.00 0.00 4.00
8663 9570 2.125912 CACGGAGCGAGGGAAGTG 60.126 66.667 0.00 0.00 0.00 3.16
8664 9571 2.776370 TACCACGGAGCGAGGGAAGT 62.776 60.000 0.00 0.00 41.62 3.01
8667 9574 2.439701 CTACCACGGAGCGAGGGA 60.440 66.667 0.00 0.00 41.62 4.20
8668 9575 4.208686 GCTACCACGGAGCGAGGG 62.209 72.222 0.00 0.00 41.62 4.30
8670 9577 1.517257 CAAGCTACCACGGAGCGAG 60.517 63.158 0.00 0.00 44.98 5.03
8671 9578 2.571757 CAAGCTACCACGGAGCGA 59.428 61.111 0.00 0.00 44.98 4.93
8673 9580 1.811679 GAGCAAGCTACCACGGAGC 60.812 63.158 0.00 0.00 40.42 4.70
8674 9581 1.153549 GGAGCAAGCTACCACGGAG 60.154 63.158 0.00 0.00 0.00 4.63
8675 9582 2.978824 GGAGCAAGCTACCACGGA 59.021 61.111 0.00 0.00 0.00 4.69
8676 9583 2.509336 CGGAGCAAGCTACCACGG 60.509 66.667 0.00 0.00 0.00 4.94
8678 9585 1.019805 GGAACGGAGCAAGCTACCAC 61.020 60.000 0.00 0.00 0.00 4.16
8680 9587 0.107654 ATGGAACGGAGCAAGCTACC 60.108 55.000 0.00 0.07 0.00 3.18
8681 9588 1.009829 CATGGAACGGAGCAAGCTAC 58.990 55.000 0.00 0.00 0.00 3.58
8687 9597 2.747460 GCAGCATGGAACGGAGCA 60.747 61.111 0.00 0.00 35.86 4.26
8694 9604 1.675310 CGGAGTTGGCAGCATGGAA 60.675 57.895 3.63 0.00 35.86 3.53
8705 9615 1.336332 CCAGATATCTCCGCGGAGTTG 60.336 57.143 44.61 33.13 42.49 3.16
8720 9630 0.324943 CTCCACAACCCGAACCAGAT 59.675 55.000 0.00 0.00 0.00 2.90
8723 9633 1.147376 CACTCCACAACCCGAACCA 59.853 57.895 0.00 0.00 0.00 3.67
8724 9634 1.599797 CCACTCCACAACCCGAACC 60.600 63.158 0.00 0.00 0.00 3.62
8725 9635 0.602905 CTCCACTCCACAACCCGAAC 60.603 60.000 0.00 0.00 0.00 3.95
8726 9636 1.052124 ACTCCACTCCACAACCCGAA 61.052 55.000 0.00 0.00 0.00 4.30
8728 9638 1.004918 GACTCCACTCCACAACCCG 60.005 63.158 0.00 0.00 0.00 5.28
8729 9639 1.375326 GGACTCCACTCCACAACCC 59.625 63.158 0.00 0.00 0.00 4.11
8730 9640 1.128188 AGGGACTCCACTCCACAACC 61.128 60.000 0.00 0.00 34.83 3.77
8731 9641 2.453242 AGGGACTCCACTCCACAAC 58.547 57.895 0.00 0.00 34.83 3.32
8744 9654 1.963172 AACACACTTTTCGGAGGGAC 58.037 50.000 0.00 0.00 0.00 4.46
8745 9655 2.294074 CAAACACACTTTTCGGAGGGA 58.706 47.619 0.00 0.00 0.00 4.20
8746 9656 2.021457 ACAAACACACTTTTCGGAGGG 58.979 47.619 0.00 0.00 0.00 4.30
8747 9657 3.002965 GGTACAAACACACTTTTCGGAGG 59.997 47.826 0.00 0.00 0.00 4.30
8748 9658 3.002965 GGGTACAAACACACTTTTCGGAG 59.997 47.826 0.00 0.00 0.00 4.63
8750 9660 2.683867 TGGGTACAAACACACTTTTCGG 59.316 45.455 0.00 0.00 32.77 4.30
8751 9661 4.099824 GTTGGGTACAAACACACTTTTCG 58.900 43.478 0.00 0.00 39.26 3.46
8755 9665 2.713877 ACGTTGGGTACAAACACACTT 58.286 42.857 10.28 0.00 39.26 3.16
8756 9666 2.406596 ACGTTGGGTACAAACACACT 57.593 45.000 10.28 0.00 39.26 3.55
8757 9667 3.490800 AAACGTTGGGTACAAACACAC 57.509 42.857 0.00 1.40 39.26 3.82
8758 9668 5.413833 TCTTAAAACGTTGGGTACAAACACA 59.586 36.000 0.00 0.00 38.54 3.72
8759 9669 5.878133 TCTTAAAACGTTGGGTACAAACAC 58.122 37.500 0.00 0.00 38.54 3.32
8761 9671 4.971830 GCTCTTAAAACGTTGGGTACAAAC 59.028 41.667 0.00 0.00 38.54 2.93
8762 9672 4.639310 TGCTCTTAAAACGTTGGGTACAAA 59.361 37.500 0.00 0.00 38.54 2.83
8763 9673 4.197750 TGCTCTTAAAACGTTGGGTACAA 58.802 39.130 0.00 0.00 0.00 2.41
8764 9674 3.806380 TGCTCTTAAAACGTTGGGTACA 58.194 40.909 0.00 0.00 0.00 2.90
8809 9728 3.196463 TGTGCTCATTGGTTTGCAAAAG 58.804 40.909 14.67 7.69 37.17 2.27
8810 9729 3.257469 TGTGCTCATTGGTTTGCAAAA 57.743 38.095 14.67 0.00 37.17 2.44
8811 9730 2.935201 GTTGTGCTCATTGGTTTGCAAA 59.065 40.909 8.05 8.05 37.17 3.68
8812 9731 2.168106 AGTTGTGCTCATTGGTTTGCAA 59.832 40.909 0.00 0.00 37.17 4.08
8813 9732 1.755959 AGTTGTGCTCATTGGTTTGCA 59.244 42.857 0.00 0.00 0.00 4.08
8814 9733 2.397549 GAGTTGTGCTCATTGGTTTGC 58.602 47.619 0.00 0.00 43.58 3.68
8828 9747 4.787551 TCTTGTTTACCCACATGAGTTGT 58.212 39.130 0.00 0.00 39.91 3.32
8829 9748 5.766150 TTCTTGTTTACCCACATGAGTTG 57.234 39.130 0.00 0.00 33.65 3.16
8830 9749 5.068591 GGTTTCTTGTTTACCCACATGAGTT 59.931 40.000 0.00 0.00 33.65 3.01
8831 9750 4.583073 GGTTTCTTGTTTACCCACATGAGT 59.417 41.667 0.00 0.00 33.65 3.41
8832 9751 4.582656 TGGTTTCTTGTTTACCCACATGAG 59.417 41.667 0.00 0.00 33.65 2.90
8833 9752 4.339814 GTGGTTTCTTGTTTACCCACATGA 59.660 41.667 0.00 0.00 41.51 3.07
8834 9753 4.340950 AGTGGTTTCTTGTTTACCCACATG 59.659 41.667 9.09 0.00 43.73 3.21
8835 9754 4.542697 AGTGGTTTCTTGTTTACCCACAT 58.457 39.130 9.09 0.00 43.73 3.21
8836 9755 3.970842 AGTGGTTTCTTGTTTACCCACA 58.029 40.909 9.09 0.00 43.73 4.17
8837 9756 6.644248 ATTAGTGGTTTCTTGTTTACCCAC 57.356 37.500 0.00 0.00 42.06 4.61
8838 9757 6.265876 GGAATTAGTGGTTTCTTGTTTACCCA 59.734 38.462 0.00 0.00 0.00 4.51
8839 9758 6.492429 AGGAATTAGTGGTTTCTTGTTTACCC 59.508 38.462 0.00 0.00 0.00 3.69
8840 9759 7.013942 ACAGGAATTAGTGGTTTCTTGTTTACC 59.986 37.037 0.00 0.00 38.54 2.85
8841 9760 7.860872 CACAGGAATTAGTGGTTTCTTGTTTAC 59.139 37.037 0.00 0.00 39.33 2.01
8842 9761 7.558444 ACACAGGAATTAGTGGTTTCTTGTTTA 59.442 33.333 9.21 0.00 39.33 2.01
8843 9762 6.379988 ACACAGGAATTAGTGGTTTCTTGTTT 59.620 34.615 9.21 0.00 39.33 2.83
8844 9763 5.891551 ACACAGGAATTAGTGGTTTCTTGTT 59.108 36.000 9.21 0.00 39.33 2.83
8845 9764 5.299279 CACACAGGAATTAGTGGTTTCTTGT 59.701 40.000 9.21 0.00 41.23 3.16
8846 9765 5.762045 CACACAGGAATTAGTGGTTTCTTG 58.238 41.667 9.21 0.00 39.99 3.02
8847 9766 4.278419 GCACACAGGAATTAGTGGTTTCTT 59.722 41.667 9.21 0.00 39.99 2.52
8848 9767 3.821033 GCACACAGGAATTAGTGGTTTCT 59.179 43.478 9.21 0.00 39.99 2.52
8849 9768 3.568007 TGCACACAGGAATTAGTGGTTTC 59.432 43.478 9.21 0.00 39.99 2.78
8850 9769 3.561143 TGCACACAGGAATTAGTGGTTT 58.439 40.909 9.21 0.00 39.99 3.27
8851 9770 3.222173 TGCACACAGGAATTAGTGGTT 57.778 42.857 9.21 0.00 39.99 3.67
8852 9771 2.949177 TGCACACAGGAATTAGTGGT 57.051 45.000 9.21 0.00 39.99 4.16
8853 9772 4.789012 AATTGCACACAGGAATTAGTGG 57.211 40.909 9.21 1.76 45.07 4.00
8854 9773 6.479660 ACAAAAATTGCACACAGGAATTAGTG 59.520 34.615 0.00 4.21 46.01 2.74
8855 9774 6.581712 ACAAAAATTGCACACAGGAATTAGT 58.418 32.000 0.00 0.00 46.01 2.24
8856 9775 7.346695 CAACAAAAATTGCACACAGGAATTAG 58.653 34.615 0.00 0.00 46.01 1.73
8857 9776 7.244166 CAACAAAAATTGCACACAGGAATTA 57.756 32.000 0.00 0.00 46.01 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.