Multiple sequence alignment - TraesCS6B01G143700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G143700 chr6B 100.000 5849 0 0 1 5849 143434040 143439888 0.000000e+00 10802.0
1 TraesCS6B01G143700 chr6B 97.778 90 2 0 5760 5849 156651551 156651462 7.850000e-34 156.0
2 TraesCS6B01G143700 chr6B 96.739 92 3 0 5758 5849 226866949 226867040 2.820000e-33 154.0
3 TraesCS6B01G143700 chr6B 90.476 42 1 1 690 728 177796526 177796567 1.100000e-02 52.8
4 TraesCS6B01G143700 chr6A 95.751 5766 181 37 1 5752 85746919 85752634 0.000000e+00 9232.0
5 TraesCS6B01G143700 chr6D 96.704 4520 135 11 737 5248 68329874 68334387 0.000000e+00 7509.0
6 TraesCS6B01G143700 chr6D 93.688 507 26 2 5247 5752 68334470 68334971 0.000000e+00 754.0
7 TraesCS6B01G143700 chr5D 93.561 1522 92 2 3339 4854 22442549 22441028 0.000000e+00 2263.0
8 TraesCS6B01G143700 chr5D 92.212 1361 99 5 1997 3355 22443936 22442581 0.000000e+00 1919.0
9 TraesCS6B01G143700 chr5D 85.153 1044 85 28 973 1971 22444950 22443932 0.000000e+00 1005.0
10 TraesCS6B01G143700 chr5B 93.001 1543 102 2 3318 4854 16035248 16033706 0.000000e+00 2246.0
11 TraesCS6B01G143700 chr5B 91.685 1359 108 3 1997 3354 16036614 16035260 0.000000e+00 1879.0
12 TraesCS6B01G143700 chr5B 84.638 1035 95 28 973 1971 16037616 16036610 0.000000e+00 972.0
13 TraesCS6B01G143700 chr5B 81.019 216 33 6 976 1189 641028685 641028476 1.300000e-36 165.0
14 TraesCS6B01G143700 chr5B 98.851 87 1 0 5763 5849 528584605 528584691 7.850000e-34 156.0
15 TraesCS6B01G143700 chr5B 79.018 224 25 11 4813 5035 705973223 705973021 3.680000e-27 134.0
16 TraesCS6B01G143700 chr7A 84.437 604 70 16 5176 5769 652706254 652705665 1.830000e-159 573.0
17 TraesCS6B01G143700 chr7A 89.732 224 20 3 357 579 709998225 709998004 3.450000e-72 283.0
18 TraesCS6B01G143700 chr7A 91.216 148 12 1 357 504 709993035 709993181 3.570000e-47 200.0
19 TraesCS6B01G143700 chr7D 84.072 609 69 17 5176 5769 566524716 566524121 3.960000e-156 562.0
20 TraesCS6B01G143700 chr7D 88.288 222 22 4 358 579 7472505 7472722 4.490000e-66 263.0
21 TraesCS6B01G143700 chr7D 82.883 222 28 6 358 579 554200687 554200476 2.150000e-44 191.0
22 TraesCS6B01G143700 chr7D 95.699 93 4 0 5757 5849 126669690 126669782 3.650000e-32 150.0
23 TraesCS6B01G143700 chr7B 83.360 631 81 15 5150 5769 620674164 620674781 3.960000e-156 562.0
24 TraesCS6B01G143700 chr7B 100.000 85 0 0 5765 5849 380869621 380869705 2.180000e-34 158.0
25 TraesCS6B01G143700 chr7B 100.000 28 0 0 690 717 418204568 418204595 1.100000e-02 52.8
26 TraesCS6B01G143700 chr3D 90.135 223 20 2 357 579 118416332 118416552 7.420000e-74 289.0
27 TraesCS6B01G143700 chr3D 95.699 93 4 0 5757 5849 326723705 326723613 3.650000e-32 150.0
28 TraesCS6B01G143700 chr3D 100.000 28 0 0 690 717 573122476 573122449 1.100000e-02 52.8
29 TraesCS6B01G143700 chr4A 89.823 226 19 4 356 579 673480048 673479825 2.670000e-73 287.0
30 TraesCS6B01G143700 chr4A 88.938 226 22 3 355 579 731199365 731199588 5.770000e-70 276.0
31 TraesCS6B01G143700 chr2D 88.688 221 22 3 359 579 433211214 433211431 3.470000e-67 267.0
32 TraesCS6B01G143700 chrUn 100.000 85 0 0 5765 5849 15981933 15981849 2.180000e-34 158.0
33 TraesCS6B01G143700 chr4B 96.739 92 3 0 5758 5849 529838245 529838336 2.820000e-33 154.0
34 TraesCS6B01G143700 chr4B 95.699 93 4 0 5757 5849 664786280 664786372 3.650000e-32 150.0
35 TraesCS6B01G143700 chr1B 87.719 57 7 0 586 642 656205416 656205360 3.780000e-07 67.6
36 TraesCS6B01G143700 chr2B 100.000 32 0 0 697 728 456178246 456178277 6.330000e-05 60.2
37 TraesCS6B01G143700 chr3A 92.857 42 0 1 690 728 9825587 9825628 2.280000e-04 58.4
38 TraesCS6B01G143700 chr3A 100.000 30 0 0 689 718 729948648 729948619 8.190000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G143700 chr6B 143434040 143439888 5848 False 10802.0 10802 100.000000 1 5849 1 chr6B.!!$F1 5848
1 TraesCS6B01G143700 chr6A 85746919 85752634 5715 False 9232.0 9232 95.751000 1 5752 1 chr6A.!!$F1 5751
2 TraesCS6B01G143700 chr6D 68329874 68334971 5097 False 4131.5 7509 95.196000 737 5752 2 chr6D.!!$F1 5015
3 TraesCS6B01G143700 chr5D 22441028 22444950 3922 True 1729.0 2263 90.308667 973 4854 3 chr5D.!!$R1 3881
4 TraesCS6B01G143700 chr5B 16033706 16037616 3910 True 1699.0 2246 89.774667 973 4854 3 chr5B.!!$R3 3881
5 TraesCS6B01G143700 chr7A 652705665 652706254 589 True 573.0 573 84.437000 5176 5769 1 chr7A.!!$R1 593
6 TraesCS6B01G143700 chr7D 566524121 566524716 595 True 562.0 562 84.072000 5176 5769 1 chr7D.!!$R2 593
7 TraesCS6B01G143700 chr7B 620674164 620674781 617 False 562.0 562 83.360000 5150 5769 1 chr7B.!!$F3 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 37 0.036952 CATATAGCAGCGGAGGGGTG 60.037 60.0 0.00 0.0 46.88 4.61 F
203 205 0.629596 ACTCATCGGTAGAGTGGGGA 59.370 55.0 4.86 0.0 44.23 4.81 F
2025 2112 0.250467 GAGCAGAGAACCTTGCCACA 60.250 55.0 0.00 0.0 0.00 4.17 F
2817 2904 0.172803 ACGTGAGGAATACGACTGCC 59.827 55.0 4.43 0.0 43.82 4.85 F
3582 3720 0.759346 ACTTGGGTGCCTCGGATATC 59.241 55.0 0.00 0.0 0.00 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1323 1383 0.820891 GGTCAATGATGCGCTGGGAT 60.821 55.0 9.73 0.0 0.00 3.85 R
2151 2238 0.032515 TCTTGTATCCCTCCTGCGGA 60.033 55.0 0.00 0.0 0.00 5.54 R
3549 3687 1.048160 CCAAGTTGGCCACCACCTTT 61.048 55.0 3.88 0.0 34.01 3.11 R
4794 4932 2.839486 TATTGTCTCCATCATCGCCC 57.161 50.0 0.00 0.0 0.00 6.13 R
5361 5597 5.239963 ACAACTACCCACTAACGGAATTTTG 59.760 40.0 0.00 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 3.198635 CCCCTGACCCATACATATAGCAG 59.801 52.174 0.00 0.00 0.00 4.24
31 33 2.159043 CCCATACATATAGCAGCGGAGG 60.159 54.545 0.00 0.00 0.00 4.30
34 36 0.471971 ACATATAGCAGCGGAGGGGT 60.472 55.000 0.00 0.00 0.00 4.95
35 37 0.036952 CATATAGCAGCGGAGGGGTG 60.037 60.000 0.00 0.00 46.88 4.61
81 83 5.786264 TTTTATGGGCCGTCAACTTTTAA 57.214 34.783 0.00 0.00 0.00 1.52
153 155 4.598406 TTACACGTCGACGAGCTATTAA 57.402 40.909 41.52 24.14 43.02 1.40
181 183 3.480470 TGCTAGAGATGCTTTTATGCCC 58.520 45.455 0.00 0.00 0.00 5.36
203 205 0.629596 ACTCATCGGTAGAGTGGGGA 59.370 55.000 4.86 0.00 44.23 4.81
219 221 1.534203 GGAAGATGAAGGAGGGGGC 59.466 63.158 0.00 0.00 0.00 5.80
254 256 1.805869 AGAGAGCAGCACAACATGAC 58.194 50.000 0.00 0.00 0.00 3.06
278 280 7.675062 ACTATGGGAGTTGATATCATTGACTC 58.325 38.462 20.73 20.73 33.13 3.36
330 332 4.944962 TTGCTTCATGAACATAACCTCG 57.055 40.909 3.38 0.00 0.00 4.63
368 370 4.515191 TGCAATGGAATAAGGCGAAGTATC 59.485 41.667 0.00 0.00 0.00 2.24
371 373 4.336889 TGGAATAAGGCGAAGTATCAGG 57.663 45.455 0.00 0.00 0.00 3.86
383 385 6.278363 GCGAAGTATCAGGTGAAAATAGGTA 58.722 40.000 0.00 0.00 0.00 3.08
386 388 7.980099 CGAAGTATCAGGTGAAAATAGGTACTT 59.020 37.037 0.00 0.00 41.75 2.24
389 391 8.422566 AGTATCAGGTGAAAATAGGTACTTAGC 58.577 37.037 0.00 0.00 41.75 3.09
400 402 9.444600 AAAATAGGTACTTAGCGAAAATCTGAA 57.555 29.630 0.00 0.00 41.75 3.02
419 421 7.156876 TCTGAAAATTTTCGCATGGTCTATT 57.843 32.000 22.51 0.00 40.01 1.73
490 492 7.759489 TCCACTTAAACACAATTAGCAGAAT 57.241 32.000 0.00 0.00 0.00 2.40
500 502 4.416848 ACAATTAGCAGAATACCCCCTGAT 59.583 41.667 0.00 0.00 33.28 2.90
513 515 1.202580 CCCCTGATCTCGTTCACCATC 60.203 57.143 0.00 0.00 0.00 3.51
519 521 3.118992 TGATCTCGTTCACCATCAAGGAG 60.119 47.826 0.00 0.00 41.22 3.69
530 532 6.077322 TCACCATCAAGGAGGAAAAATCTTT 58.923 36.000 0.00 0.00 41.22 2.52
531 533 6.209391 TCACCATCAAGGAGGAAAAATCTTTC 59.791 38.462 0.00 0.00 41.22 2.62
532 534 5.183904 ACCATCAAGGAGGAAAAATCTTTCG 59.816 40.000 0.00 0.00 40.05 3.46
533 535 5.183904 CCATCAAGGAGGAAAAATCTTTCGT 59.816 40.000 0.00 0.00 40.05 3.85
535 537 5.373222 TCAAGGAGGAAAAATCTTTCGTGA 58.627 37.500 0.00 0.00 41.70 4.35
536 538 5.470098 TCAAGGAGGAAAAATCTTTCGTGAG 59.530 40.000 0.00 0.00 41.70 3.51
537 539 4.974399 AGGAGGAAAAATCTTTCGTGAGT 58.026 39.130 0.00 0.00 41.70 3.41
538 540 4.757149 AGGAGGAAAAATCTTTCGTGAGTG 59.243 41.667 0.00 0.00 41.70 3.51
539 541 4.515567 GGAGGAAAAATCTTTCGTGAGTGT 59.484 41.667 0.00 0.00 41.70 3.55
540 542 5.334182 GGAGGAAAAATCTTTCGTGAGTGTC 60.334 44.000 0.00 0.00 41.70 3.67
541 543 4.515567 AGGAAAAATCTTTCGTGAGTGTCC 59.484 41.667 0.00 0.00 41.70 4.02
542 544 4.320275 GGAAAAATCTTTCGTGAGTGTCCC 60.320 45.833 0.00 0.00 41.70 4.46
543 545 3.771577 AAATCTTTCGTGAGTGTCCCT 57.228 42.857 0.00 0.00 0.00 4.20
544 546 4.884668 AAATCTTTCGTGAGTGTCCCTA 57.115 40.909 0.00 0.00 0.00 3.53
545 547 3.870633 ATCTTTCGTGAGTGTCCCTAC 57.129 47.619 0.00 0.00 0.00 3.18
546 548 1.538512 TCTTTCGTGAGTGTCCCTACG 59.461 52.381 0.00 0.00 37.85 3.51
547 549 1.538512 CTTTCGTGAGTGTCCCTACGA 59.461 52.381 0.00 0.00 42.94 3.43
548 550 1.830279 TTCGTGAGTGTCCCTACGAT 58.170 50.000 0.00 0.00 43.89 3.73
549 551 2.696989 TCGTGAGTGTCCCTACGATA 57.303 50.000 0.00 0.00 40.21 2.92
550 552 2.558378 TCGTGAGTGTCCCTACGATAG 58.442 52.381 0.00 0.00 40.21 2.08
551 553 1.602851 CGTGAGTGTCCCTACGATAGG 59.397 57.143 0.00 0.00 45.81 2.57
552 554 2.652590 GTGAGTGTCCCTACGATAGGT 58.347 52.381 9.33 0.00 44.73 3.08
553 555 3.022406 GTGAGTGTCCCTACGATAGGTT 58.978 50.000 9.33 0.00 44.73 3.50
554 556 3.066481 GTGAGTGTCCCTACGATAGGTTC 59.934 52.174 9.33 4.22 44.73 3.62
555 557 3.285484 GAGTGTCCCTACGATAGGTTCA 58.715 50.000 9.33 6.09 44.73 3.18
556 558 3.022406 AGTGTCCCTACGATAGGTTCAC 58.978 50.000 17.34 17.34 44.73 3.18
557 559 2.019249 TGTCCCTACGATAGGTTCACG 58.981 52.381 9.33 0.00 44.73 4.35
558 560 2.019984 GTCCCTACGATAGGTTCACGT 58.980 52.381 9.33 0.00 44.73 4.49
589 591 3.053291 GCCGCCACGTTTCATGGA 61.053 61.111 0.00 0.00 39.87 3.41
608 610 4.933134 TGGACCATGATGGAATTTTCAGA 58.067 39.130 20.11 0.00 40.96 3.27
698 722 7.254852 TCTTGAATTCACCCGCAAAATAATAC 58.745 34.615 7.89 0.00 0.00 1.89
700 724 6.791303 TGAATTCACCCGCAAAATAATACTC 58.209 36.000 3.38 0.00 0.00 2.59
701 725 5.767816 ATTCACCCGCAAAATAATACTCC 57.232 39.130 0.00 0.00 0.00 3.85
702 726 3.547746 TCACCCGCAAAATAATACTCCC 58.452 45.455 0.00 0.00 0.00 4.30
703 727 3.201266 TCACCCGCAAAATAATACTCCCT 59.799 43.478 0.00 0.00 0.00 4.20
704 728 3.564225 CACCCGCAAAATAATACTCCCTC 59.436 47.826 0.00 0.00 0.00 4.30
705 729 3.146847 CCCGCAAAATAATACTCCCTCC 58.853 50.000 0.00 0.00 0.00 4.30
706 730 2.806244 CCGCAAAATAATACTCCCTCCG 59.194 50.000 0.00 0.00 0.00 4.63
707 731 3.463944 CGCAAAATAATACTCCCTCCGT 58.536 45.455 0.00 0.00 0.00 4.69
708 732 4.501915 CCGCAAAATAATACTCCCTCCGTA 60.502 45.833 0.00 0.00 0.00 4.02
709 733 5.051816 CGCAAAATAATACTCCCTCCGTAA 58.948 41.667 0.00 0.00 0.00 3.18
710 734 5.524646 CGCAAAATAATACTCCCTCCGTAAA 59.475 40.000 0.00 0.00 0.00 2.01
711 735 6.510638 CGCAAAATAATACTCCCTCCGTAAAC 60.511 42.308 0.00 0.00 0.00 2.01
712 736 6.541278 GCAAAATAATACTCCCTCCGTAAACT 59.459 38.462 0.00 0.00 0.00 2.66
713 737 7.712205 GCAAAATAATACTCCCTCCGTAAACTA 59.288 37.037 0.00 0.00 0.00 2.24
714 738 9.603921 CAAAATAATACTCCCTCCGTAAACTAA 57.396 33.333 0.00 0.00 0.00 2.24
719 743 7.999450 ATACTCCCTCCGTAAACTAATAGAG 57.001 40.000 0.00 0.00 0.00 2.43
720 744 4.583907 ACTCCCTCCGTAAACTAATAGAGC 59.416 45.833 0.00 0.00 0.00 4.09
721 745 4.539726 TCCCTCCGTAAACTAATAGAGCA 58.460 43.478 0.00 0.00 0.00 4.26
722 746 5.145564 TCCCTCCGTAAACTAATAGAGCAT 58.854 41.667 0.00 0.00 0.00 3.79
723 747 5.601313 TCCCTCCGTAAACTAATAGAGCATT 59.399 40.000 0.00 0.00 0.00 3.56
724 748 6.099269 TCCCTCCGTAAACTAATAGAGCATTT 59.901 38.462 0.00 0.00 0.00 2.32
725 749 7.288389 TCCCTCCGTAAACTAATAGAGCATTTA 59.712 37.037 0.00 0.00 0.00 1.40
726 750 7.599245 CCCTCCGTAAACTAATAGAGCATTTAG 59.401 40.741 0.00 0.00 0.00 1.85
727 751 8.358148 CCTCCGTAAACTAATAGAGCATTTAGA 58.642 37.037 0.00 0.00 31.36 2.10
728 752 9.400638 CTCCGTAAACTAATAGAGCATTTAGAG 57.599 37.037 0.00 0.00 31.36 2.43
729 753 8.358148 TCCGTAAACTAATAGAGCATTTAGAGG 58.642 37.037 0.00 0.00 31.36 3.69
730 754 7.599245 CCGTAAACTAATAGAGCATTTAGAGGG 59.401 40.741 0.00 0.00 31.36 4.30
731 755 8.358148 CGTAAACTAATAGAGCATTTAGAGGGA 58.642 37.037 0.00 0.00 31.36 4.20
732 756 9.699703 GTAAACTAATAGAGCATTTAGAGGGAG 57.300 37.037 0.00 0.00 31.36 4.30
733 757 7.922699 AACTAATAGAGCATTTAGAGGGAGT 57.077 36.000 0.00 0.00 31.36 3.85
734 758 9.435570 AAACTAATAGAGCATTTAGAGGGAGTA 57.564 33.333 0.00 0.00 31.36 2.59
735 759 9.435570 AACTAATAGAGCATTTAGAGGGAGTAA 57.564 33.333 0.00 0.00 31.36 2.24
955 986 1.299773 CTCAATCTCGCCTCGCCTC 60.300 63.158 0.00 0.00 0.00 4.70
987 1018 1.945354 CTCTCGCGAAACCCTAGCCA 61.945 60.000 11.33 0.00 0.00 4.75
1323 1383 3.797353 GGGATGCCCGCCAAGAGA 61.797 66.667 0.00 0.00 32.13 3.10
1338 1398 0.763652 AGAGATCCCAGCGCATCATT 59.236 50.000 11.47 0.00 0.00 2.57
1686 1764 1.687612 CCCTGATGCAACTCCTGGT 59.312 57.895 0.00 0.00 0.00 4.00
1941 2028 2.423446 CCAGCGAGTATGGGGAGC 59.577 66.667 0.00 0.00 33.94 4.70
1992 2079 0.764890 CAGGGTTCAACACTCCTGGA 59.235 55.000 0.00 0.00 38.92 3.86
2025 2112 0.250467 GAGCAGAGAACCTTGCCACA 60.250 55.000 0.00 0.00 0.00 4.17
2067 2154 3.461773 CGTGGCCCGATGACTCCT 61.462 66.667 0.00 0.00 39.56 3.69
2088 2175 1.079819 GCAGTACCAGCTCTTGCGA 60.080 57.895 0.93 0.00 45.42 5.10
2289 2376 1.668151 GGAGAACCGTGGACAGCAC 60.668 63.158 0.00 0.00 0.00 4.40
2308 2395 0.890683 CTTTGATGTGCCCAAGGACC 59.109 55.000 0.00 0.00 0.00 4.46
2574 2661 1.142870 CCAACACTTGAGGACCAGGAA 59.857 52.381 0.00 0.00 0.00 3.36
2577 2664 0.393077 CACTTGAGGACCAGGAACGT 59.607 55.000 0.00 0.00 0.00 3.99
2634 2721 2.503061 CTGGATGAGCTGGTCCGG 59.497 66.667 4.17 8.09 37.32 5.14
2775 2862 0.622136 TGATTGCTGCCATGAGACCT 59.378 50.000 0.00 0.00 0.00 3.85
2790 2877 7.065563 GCCATGAGACCTGATATTGATAACATC 59.934 40.741 0.00 0.00 0.00 3.06
2799 2886 7.482113 CCTGATATTGATAACATCGACGAGTAC 59.518 40.741 3.01 0.00 0.00 2.73
2817 2904 0.172803 ACGTGAGGAATACGACTGCC 59.827 55.000 4.43 0.00 43.82 4.85
3237 3324 3.119566 CCAGTTACTACACGAAGGAGGTC 60.120 52.174 0.00 0.00 0.00 3.85
3477 3615 3.914435 ACAAGGTGGGAGTTACTGGTATT 59.086 43.478 0.00 0.00 0.00 1.89
3582 3720 0.759346 ACTTGGGTGCCTCGGATATC 59.241 55.000 0.00 0.00 0.00 1.63
3759 3897 3.056891 CCATTAAGTGGCGGTTGAACAAT 60.057 43.478 0.00 0.00 42.12 2.71
4392 4530 6.180472 TGGTGTTTTGAAGTCTCTCTCTTTT 58.820 36.000 0.00 0.00 0.00 2.27
4395 4533 7.711339 GGTGTTTTGAAGTCTCTCTCTTTTCTA 59.289 37.037 0.00 0.00 0.00 2.10
4794 4932 3.076621 TGTTGCTTCTTATCCTGCACTG 58.923 45.455 0.00 0.00 35.01 3.66
4927 5068 8.560374 GTTTGAGTAGCTACTGAAAAATTCTGT 58.440 33.333 31.54 6.61 40.20 3.41
5020 5161 4.461781 AGCAATTCCTTTTGATCCAGACTG 59.538 41.667 0.00 0.00 0.00 3.51
5035 5176 4.523173 TCCAGACTGTACTTGTAGGAGTTG 59.477 45.833 0.93 0.00 0.00 3.16
5036 5177 4.281182 CCAGACTGTACTTGTAGGAGTTGT 59.719 45.833 0.93 0.00 0.00 3.32
5039 5180 6.430308 CAGACTGTACTTGTAGGAGTTGTCTA 59.570 42.308 0.00 0.00 34.69 2.59
5169 5313 1.135083 ACTCAGCCAGTAACGAATCGG 60.135 52.381 7.80 0.00 31.37 4.18
5228 5375 5.655532 AGCTCCATCAGAATTTGCAACTATT 59.344 36.000 0.00 0.00 0.00 1.73
5261 5492 5.592282 TGCAAAATCTAGAACAGGAACACAA 59.408 36.000 0.00 0.00 0.00 3.33
5361 5597 3.629142 AGGTGGATGCAGGTAGTAAAC 57.371 47.619 0.00 0.00 0.00 2.01
5369 5606 6.071616 TGGATGCAGGTAGTAAACAAAATTCC 60.072 38.462 0.00 0.00 0.00 3.01
5396 5633 4.887655 AGTGGGTAGTTGTTTCTTTTCCTG 59.112 41.667 0.00 0.00 0.00 3.86
5435 5674 6.096846 ACTTTCTTGCCTTTGTATTCAACTGT 59.903 34.615 0.00 0.00 32.93 3.55
5437 5676 7.575414 TTCTTGCCTTTGTATTCAACTGTTA 57.425 32.000 0.00 0.00 32.93 2.41
5544 5786 4.732672 ACATTAGTCCCGAACTCCTAAC 57.267 45.455 0.00 0.00 39.55 2.34
5608 5851 6.949352 AGATTTACATATCCTGCTTTGTGG 57.051 37.500 0.00 0.00 0.00 4.17
5770 6016 8.691661 TGCCAAGAATATTATTTTCTACTCCC 57.308 34.615 0.00 0.00 33.17 4.30
5771 6017 8.502738 TGCCAAGAATATTATTTTCTACTCCCT 58.497 33.333 0.00 0.00 33.17 4.20
5772 6018 9.004717 GCCAAGAATATTATTTTCTACTCCCTC 57.995 37.037 0.00 0.00 33.17 4.30
5773 6019 9.508642 CCAAGAATATTATTTTCTACTCCCTCC 57.491 37.037 0.00 0.00 33.17 4.30
5774 6020 9.209175 CAAGAATATTATTTTCTACTCCCTCCG 57.791 37.037 0.00 0.00 33.17 4.63
5775 6021 8.493787 AGAATATTATTTTCTACTCCCTCCGT 57.506 34.615 0.00 0.00 31.75 4.69
5776 6022 8.935741 AGAATATTATTTTCTACTCCCTCCGTT 58.064 33.333 0.00 0.00 31.75 4.44
5777 6023 9.205719 GAATATTATTTTCTACTCCCTCCGTTC 57.794 37.037 0.00 0.00 0.00 3.95
5778 6024 3.521947 ATTTTCTACTCCCTCCGTTCG 57.478 47.619 0.00 0.00 0.00 3.95
5779 6025 1.180029 TTTCTACTCCCTCCGTTCGG 58.820 55.000 4.74 4.74 0.00 4.30
5780 6026 0.329261 TTCTACTCCCTCCGTTCGGA 59.671 55.000 13.34 13.34 0.00 4.55
5781 6027 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
5782 6028 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
5783 6029 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
5784 6030 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5785 6031 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5786 6032 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5787 6033 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5788 6034 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5789 6035 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5790 6036 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5791 6037 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
5792 6038 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
5793 6039 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
5794 6040 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
5795 6041 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
5796 6042 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
5797 6043 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
5798 6044 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
5799 6045 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
5800 6046 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
5801 6047 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
5802 6048 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
5803 6049 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
5804 6050 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
5805 6051 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
5806 6052 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
5807 6053 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
5808 6054 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
5809 6055 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
5810 6056 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
5811 6057 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
5812 6058 5.117287 GTCGCGAAAATGGATGTATCTAGAC 59.883 44.000 12.06 0.00 0.00 2.59
5813 6059 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
5814 6060 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
5815 6061 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
5816 6062 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
5817 6063 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
5818 6064 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
5845 6091 8.324191 AGTTCTAGATACATCCATTTCCAAGA 57.676 34.615 0.00 0.00 0.00 3.02
5846 6092 8.207545 AGTTCTAGATACATCCATTTCCAAGAC 58.792 37.037 0.00 0.00 0.00 3.01
5847 6093 7.675161 TCTAGATACATCCATTTCCAAGACA 57.325 36.000 0.00 0.00 0.00 3.41
5848 6094 8.089625 TCTAGATACATCCATTTCCAAGACAA 57.910 34.615 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 2.980233 GCATATGCACCCCTCCGC 60.980 66.667 22.84 0.00 41.59 5.54
31 33 2.972505 CGACCCGCATATGCACCC 60.973 66.667 26.52 11.51 42.21 4.61
57 59 4.882842 AAAGTTGACGGCCCATAAAAAT 57.117 36.364 0.00 0.00 0.00 1.82
81 83 2.702592 TTCGGCCCGAACAAATCTAT 57.297 45.000 15.93 0.00 41.05 1.98
119 121 4.992319 TCGACGTGTAAAATTCCATCTGTT 59.008 37.500 0.00 0.00 0.00 3.16
153 155 4.399004 AAAGCATCTCTAGCAGATTCGT 57.601 40.909 2.93 0.00 40.20 3.85
181 183 1.137086 CCCACTCTACCGATGAGTTGG 59.863 57.143 7.66 7.66 42.21 3.77
203 205 2.378634 CCGCCCCCTCCTTCATCTT 61.379 63.158 0.00 0.00 0.00 2.40
219 221 0.171455 CTCTTCTCTCGAACACCCCG 59.829 60.000 0.00 0.00 0.00 5.73
241 243 2.941064 CTCCCATAGTCATGTTGTGCTG 59.059 50.000 0.00 0.00 0.00 4.41
254 256 7.102346 GGAGTCAATGATATCAACTCCCATAG 58.898 42.308 29.52 8.30 46.74 2.23
299 301 6.889301 TGTTCATGAAGCAAAAAGATCTCT 57.111 33.333 8.80 0.00 0.00 3.10
300 302 9.070149 GTTATGTTCATGAAGCAAAAAGATCTC 57.930 33.333 8.80 0.00 0.00 2.75
302 304 8.031277 AGGTTATGTTCATGAAGCAAAAAGATC 58.969 33.333 8.80 0.00 0.00 2.75
303 305 7.899973 AGGTTATGTTCATGAAGCAAAAAGAT 58.100 30.769 8.80 0.00 0.00 2.40
304 306 7.288810 AGGTTATGTTCATGAAGCAAAAAGA 57.711 32.000 8.80 0.00 0.00 2.52
305 307 6.306356 CGAGGTTATGTTCATGAAGCAAAAAG 59.694 38.462 8.80 0.00 0.00 2.27
314 316 3.466836 GCCATCGAGGTTATGTTCATGA 58.533 45.455 0.00 0.00 40.61 3.07
330 332 1.939974 TTGCACTACATCTCGCCATC 58.060 50.000 0.00 0.00 0.00 3.51
368 370 5.657474 TCGCTAAGTACCTATTTTCACCTG 58.343 41.667 0.00 0.00 0.00 4.00
371 373 8.880750 AGATTTTCGCTAAGTACCTATTTTCAC 58.119 33.333 0.00 0.00 0.00 3.18
400 402 8.682936 AGATCTAATAGACCATGCGAAAATTT 57.317 30.769 0.00 0.00 0.00 1.82
430 432 4.339247 CCACCTTTTGATCAGTGTTGTTCT 59.661 41.667 10.80 0.00 0.00 3.01
490 492 1.481871 GTGAACGAGATCAGGGGGTA 58.518 55.000 0.00 0.00 0.00 3.69
500 502 1.550524 CCTCCTTGATGGTGAACGAGA 59.449 52.381 0.00 0.00 37.07 4.04
513 515 5.239525 ACTCACGAAAGATTTTTCCTCCTTG 59.760 40.000 3.32 0.00 39.63 3.61
519 521 4.320275 GGGACACTCACGAAAGATTTTTCC 60.320 45.833 3.32 0.00 39.63 3.13
530 532 2.558378 CTATCGTAGGGACACTCACGA 58.442 52.381 10.45 10.45 46.22 4.35
531 533 1.602851 CCTATCGTAGGGACACTCACG 59.397 57.143 3.84 0.00 42.42 4.35
542 544 4.611310 TTGAGACGTGAACCTATCGTAG 57.389 45.455 0.00 0.00 37.92 3.51
543 545 4.880120 AGATTGAGACGTGAACCTATCGTA 59.120 41.667 0.00 0.00 37.92 3.43
544 546 3.695060 AGATTGAGACGTGAACCTATCGT 59.305 43.478 0.00 0.00 40.49 3.73
545 547 4.294416 AGATTGAGACGTGAACCTATCG 57.706 45.455 0.00 0.00 0.00 2.92
546 548 7.534578 CGTATAAGATTGAGACGTGAACCTATC 59.465 40.741 0.00 0.00 0.00 2.08
547 549 7.361127 CGTATAAGATTGAGACGTGAACCTAT 58.639 38.462 0.00 0.00 0.00 2.57
548 550 6.722301 CGTATAAGATTGAGACGTGAACCTA 58.278 40.000 0.00 0.00 0.00 3.08
549 551 5.579718 CGTATAAGATTGAGACGTGAACCT 58.420 41.667 0.00 0.00 0.00 3.50
550 552 4.206609 GCGTATAAGATTGAGACGTGAACC 59.793 45.833 0.00 0.00 35.97 3.62
551 553 4.206609 GGCGTATAAGATTGAGACGTGAAC 59.793 45.833 0.00 0.00 35.97 3.18
552 554 4.357142 GGCGTATAAGATTGAGACGTGAA 58.643 43.478 0.00 0.00 35.97 3.18
553 555 3.547413 CGGCGTATAAGATTGAGACGTGA 60.547 47.826 0.00 0.00 35.97 4.35
554 556 2.719556 CGGCGTATAAGATTGAGACGTG 59.280 50.000 0.00 0.00 35.97 4.49
555 557 2.857489 GCGGCGTATAAGATTGAGACGT 60.857 50.000 9.37 0.00 35.97 4.34
556 558 1.714460 GCGGCGTATAAGATTGAGACG 59.286 52.381 9.37 0.00 36.62 4.18
557 559 2.059541 GGCGGCGTATAAGATTGAGAC 58.940 52.381 9.37 0.00 0.00 3.36
558 560 1.684450 TGGCGGCGTATAAGATTGAGA 59.316 47.619 9.37 0.00 0.00 3.27
589 591 7.820872 GTGAAAATCTGAAAATTCCATCATGGT 59.179 33.333 2.79 0.00 39.03 3.55
665 689 6.329496 TGCGGGTGAATTCAAGAAATAAATC 58.671 36.000 10.35 0.00 0.00 2.17
673 697 5.713792 TTATTTTGCGGGTGAATTCAAGA 57.286 34.783 10.35 0.00 0.00 3.02
698 722 4.583489 TGCTCTATTAGTTTACGGAGGGAG 59.417 45.833 0.00 0.00 0.00 4.30
700 724 4.931661 TGCTCTATTAGTTTACGGAGGG 57.068 45.455 0.00 0.00 0.00 4.30
701 725 8.358148 TCTAAATGCTCTATTAGTTTACGGAGG 58.642 37.037 0.00 0.00 32.27 4.30
702 726 9.400638 CTCTAAATGCTCTATTAGTTTACGGAG 57.599 37.037 0.00 0.00 32.27 4.63
703 727 8.358148 CCTCTAAATGCTCTATTAGTTTACGGA 58.642 37.037 0.00 0.00 32.27 4.69
704 728 7.599245 CCCTCTAAATGCTCTATTAGTTTACGG 59.401 40.741 0.00 0.00 32.27 4.02
705 729 8.358148 TCCCTCTAAATGCTCTATTAGTTTACG 58.642 37.037 0.00 0.00 32.27 3.18
706 730 9.699703 CTCCCTCTAAATGCTCTATTAGTTTAC 57.300 37.037 0.00 0.00 32.27 2.01
707 731 9.435570 ACTCCCTCTAAATGCTCTATTAGTTTA 57.564 33.333 0.00 0.00 32.27 2.01
708 732 8.325477 ACTCCCTCTAAATGCTCTATTAGTTT 57.675 34.615 0.00 0.00 32.27 2.66
709 733 7.922699 ACTCCCTCTAAATGCTCTATTAGTT 57.077 36.000 0.00 0.00 32.27 2.24
710 734 9.608718 ATTACTCCCTCTAAATGCTCTATTAGT 57.391 33.333 0.00 0.00 32.27 2.24
841 867 0.107214 GCCGTTGATTGATCTGGGGA 60.107 55.000 0.00 0.00 0.00 4.81
842 868 1.103398 GGCCGTTGATTGATCTGGGG 61.103 60.000 0.00 0.00 0.00 4.96
843 869 1.103398 GGGCCGTTGATTGATCTGGG 61.103 60.000 0.00 0.00 0.00 4.45
1079 1118 3.147595 CGGAGGAGACGGCCATGA 61.148 66.667 2.24 0.00 0.00 3.07
1146 1185 3.177249 GTGTCGTAGCCGGCGAAC 61.177 66.667 23.20 21.93 43.03 3.95
1323 1383 0.820891 GGTCAATGATGCGCTGGGAT 60.821 55.000 9.73 0.00 0.00 3.85
1338 1398 2.046988 TAGTCGTCCTCGCGGTCA 60.047 61.111 6.13 0.00 36.96 4.02
1503 1563 6.037786 TCCTTCTTCTTCTTAGCGATTTCA 57.962 37.500 0.00 0.00 0.00 2.69
1710 1788 2.045926 GCATCTCCAACACGGCCT 60.046 61.111 0.00 0.00 33.14 5.19
1992 2079 1.202758 TCTGCTCCGAATGGTGTTTGT 60.203 47.619 0.00 0.00 36.30 2.83
2049 2136 4.530857 GGAGTCATCGGGCCACGG 62.531 72.222 4.39 0.00 44.45 4.94
2088 2175 1.528824 CTCAATGTCCCGCTCCCAT 59.471 57.895 0.00 0.00 0.00 4.00
2151 2238 0.032515 TCTTGTATCCCTCCTGCGGA 60.033 55.000 0.00 0.00 0.00 5.54
2289 2376 0.890683 GGTCCTTGGGCACATCAAAG 59.109 55.000 0.00 0.00 0.00 2.77
2308 2395 2.520458 TGGCAAACCAGGACCCAG 59.480 61.111 0.00 0.00 42.67 4.45
2634 2721 3.308438 AGAATCTTGTGCACAAATGGC 57.692 42.857 30.62 20.18 35.15 4.40
2775 2862 7.013529 CGTACTCGTCGATGTTATCAATATCA 58.986 38.462 4.21 0.00 0.00 2.15
2799 2886 0.172578 TGGCAGTCGTATTCCTCACG 59.827 55.000 0.00 0.00 40.72 4.35
2817 2904 1.246056 CCACCACACTGAATGCCCTG 61.246 60.000 0.00 0.00 0.00 4.45
3117 3204 1.691434 CTGATACCCTTCCAGAGAGGC 59.309 57.143 0.00 0.00 37.29 4.70
3237 3324 5.021033 ACTCTCTAATCAGGACTTGCATG 57.979 43.478 0.00 0.00 0.00 4.06
3477 3615 3.874383 TCCTCAACAATCTTCCCAACA 57.126 42.857 0.00 0.00 0.00 3.33
3549 3687 1.048160 CCAAGTTGGCCACCACCTTT 61.048 55.000 3.88 0.00 34.01 3.11
3592 3730 3.548770 CATCAATAAGCAGCTCCTCCAA 58.451 45.455 0.00 0.00 0.00 3.53
3759 3897 3.585862 CTGCCTAACTTTCGCACTCTTA 58.414 45.455 0.00 0.00 0.00 2.10
4392 4530 8.597167 CCCATCTCACCAATATACTCAAATAGA 58.403 37.037 0.00 0.00 0.00 1.98
4395 4533 6.006449 GCCCATCTCACCAATATACTCAAAT 58.994 40.000 0.00 0.00 0.00 2.32
4794 4932 2.839486 TATTGTCTCCATCATCGCCC 57.161 50.000 0.00 0.00 0.00 6.13
5035 5176 8.821894 CATTACTCCAACAGCTTAAGAATAGAC 58.178 37.037 6.67 0.00 0.00 2.59
5036 5177 8.540388 ACATTACTCCAACAGCTTAAGAATAGA 58.460 33.333 6.67 0.00 0.00 1.98
5039 5180 8.409358 AAACATTACTCCAACAGCTTAAGAAT 57.591 30.769 6.67 0.00 0.00 2.40
5159 5303 7.230108 ACCTATTATCAGAGTTCCGATTCGTTA 59.770 37.037 5.20 0.00 0.00 3.18
5228 5375 8.134895 CCTGTTCTAGATTTTGCACTTTAAACA 58.865 33.333 0.00 0.00 0.00 2.83
5261 5492 8.607459 GTCTTGACAATGTAAAATCGATCTGAT 58.393 33.333 0.00 0.00 39.67 2.90
5361 5597 5.239963 ACAACTACCCACTAACGGAATTTTG 59.760 40.000 0.00 0.00 0.00 2.44
5369 5606 5.996669 AAAGAAACAACTACCCACTAACG 57.003 39.130 0.00 0.00 0.00 3.18
5435 5674 8.795513 TGAGCATGAAACAAAGAATCTTGATAA 58.204 29.630 0.00 0.00 0.00 1.75
5437 5676 7.223260 TGAGCATGAAACAAAGAATCTTGAT 57.777 32.000 0.00 0.00 0.00 2.57
5608 5851 7.327214 AGATACTCCTCAAAATGTGAAGTCTC 58.673 38.462 0.00 0.00 35.22 3.36
5747 5993 9.508642 GGAGGGAGTAGAAAATAATATTCTTGG 57.491 37.037 0.00 0.00 38.13 3.61
5754 6000 6.239120 CCGAACGGAGGGAGTAGAAAATAATA 60.239 42.308 7.53 0.00 37.50 0.98
5766 6012 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5767 6013 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5768 6014 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5770 6016 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
5771 6017 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
5772 6018 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
5773 6019 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
5774 6020 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
5775 6021 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
5776 6022 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
5777 6023 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
5778 6024 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
5779 6025 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
5780 6026 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
5781 6027 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
5782 6028 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
5783 6029 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
5784 6030 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
5785 6031 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
5786 6032 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
5787 6033 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
5788 6034 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
5789 6035 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
5790 6036 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
5791 6037 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
5792 6038 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
5819 6065 9.434275 TCTTGGAAATGGATGTATCTAGAACTA 57.566 33.333 0.00 0.00 0.00 2.24
5820 6066 8.207545 GTCTTGGAAATGGATGTATCTAGAACT 58.792 37.037 0.00 0.00 0.00 3.01
5821 6067 7.987458 TGTCTTGGAAATGGATGTATCTAGAAC 59.013 37.037 0.00 0.00 0.00 3.01
5822 6068 8.089625 TGTCTTGGAAATGGATGTATCTAGAA 57.910 34.615 0.00 0.00 0.00 2.10
5823 6069 7.675161 TGTCTTGGAAATGGATGTATCTAGA 57.325 36.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.