Multiple sequence alignment - TraesCS6B01G143300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G143300 chr6B 100.000 3231 0 0 1 3231 142985511 142982281 0.000000e+00 5967
1 TraesCS6B01G143300 chr6B 88.854 951 89 11 1604 2551 630832956 630832020 0.000000e+00 1153
2 TraesCS6B01G143300 chr4B 91.904 1297 91 6 1603 2897 88350945 88349661 0.000000e+00 1801
3 TraesCS6B01G143300 chr1A 87.144 1509 142 31 1253 2723 518114034 518115528 0.000000e+00 1664
4 TraesCS6B01G143300 chr1A 83.882 1427 134 35 1509 2841 542355460 542354036 0.000000e+00 1273
5 TraesCS6B01G143300 chr1A 90.440 910 71 12 1652 2551 77264379 77265282 0.000000e+00 1184
6 TraesCS6B01G143300 chr4D 90.650 1123 99 5 1604 2723 470183659 470182540 0.000000e+00 1487
7 TraesCS6B01G143300 chr4D 91.961 510 40 1 2723 3231 491383601 491384110 0.000000e+00 713
8 TraesCS6B01G143300 chr4D 86.326 607 65 16 619 1214 491381490 491382089 0.000000e+00 645
9 TraesCS6B01G143300 chr3D 90.611 1129 94 8 1604 2723 383172094 383170969 0.000000e+00 1487
10 TraesCS6B01G143300 chr3D 91.961 510 40 1 2723 3231 610059202 610058693 0.000000e+00 713
11 TraesCS6B01G143300 chr3D 86.116 605 63 17 619 1211 388399237 388399832 1.640000e-177 632
12 TraesCS6B01G143300 chr3D 85.479 606 68 17 619 1212 334133 334730 5.920000e-172 614
13 TraesCS6B01G143300 chr3D 94.898 196 10 0 1257 1452 149759299 149759494 1.130000e-79 307
14 TraesCS6B01G143300 chr3D 93.878 196 12 0 1257 1452 610062126 610061931 2.440000e-76 296
15 TraesCS6B01G143300 chr7B 90.578 1125 92 9 1604 2723 730311122 730312237 0.000000e+00 1478
16 TraesCS6B01G143300 chr7B 88.198 1254 121 15 1509 2749 43570990 43572229 0.000000e+00 1471
17 TraesCS6B01G143300 chr7B 91.610 1025 78 4 1704 2723 156407289 156406268 0.000000e+00 1410
18 TraesCS6B01G143300 chr7B 86.326 607 62 16 619 1215 156416779 156416184 2.720000e-180 641
19 TraesCS6B01G143300 chr7B 83.678 435 42 16 2588 2996 672857629 672857198 1.820000e-102 383
20 TraesCS6B01G143300 chr7B 93.500 200 13 0 1253 1452 156416186 156415987 6.780000e-77 298
21 TraesCS6B01G143300 chr7B 93.500 200 13 0 1253 1452 730310741 730310940 6.780000e-77 298
22 TraesCS6B01G143300 chr7B 91.411 163 12 2 2588 2749 619625859 619626020 4.200000e-54 222
23 TraesCS6B01G143300 chr7D 90.210 1144 87 13 1604 2736 503837207 503836078 0.000000e+00 1469
24 TraesCS6B01G143300 chr7D 81.500 1200 163 40 1253 2410 525734319 525735501 0.000000e+00 931
25 TraesCS6B01G143300 chr7D 92.157 510 39 1 2723 3231 531065627 531065118 0.000000e+00 719
26 TraesCS6B01G143300 chr5A 90.769 910 69 11 1652 2551 540624150 540623246 0.000000e+00 1201
27 TraesCS6B01G143300 chr1B 81.151 1199 170 38 1253 2410 539849349 539848166 0.000000e+00 911
28 TraesCS6B01G143300 chr2A 81.088 1195 168 35 1253 2410 38506759 38505586 0.000000e+00 902
29 TraesCS6B01G143300 chr5D 90.840 655 51 5 2578 3231 555415451 555416097 0.000000e+00 869
30 TraesCS6B01G143300 chr5D 92.157 510 39 1 2723 3231 333091226 333091735 0.000000e+00 719
31 TraesCS6B01G143300 chr5D 91.961 510 40 1 2723 3231 552026956 552026447 0.000000e+00 713
32 TraesCS6B01G143300 chr5D 86.161 607 66 15 619 1214 552029045 552028446 9.770000e-180 640
33 TraesCS6B01G143300 chr5D 86.184 608 63 17 619 1214 555413536 555414134 3.520000e-179 638
34 TraesCS6B01G143300 chr5D 85.855 608 67 17 619 1214 78602934 78602334 2.120000e-176 628
35 TraesCS6B01G143300 chr5D 93.878 196 12 0 1257 1452 27863664 27863859 2.440000e-76 296
36 TraesCS6B01G143300 chr5D 93.878 196 12 0 1257 1452 78602332 78602137 2.440000e-76 296
37 TraesCS6B01G143300 chr6A 84.945 817 105 11 1601 2410 117534380 117535185 0.000000e+00 811
38 TraesCS6B01G143300 chr6A 80.837 621 65 12 12 618 85569462 85568882 3.830000e-119 438
39 TraesCS6B01G143300 chr2D 91.961 510 40 1 2723 3231 617342855 617343364 0.000000e+00 713
40 TraesCS6B01G143300 chr6D 91.765 510 41 1 2723 3231 420173323 420173832 0.000000e+00 708
41 TraesCS6B01G143300 chr6D 85.550 609 67 18 618 1214 420171216 420171815 4.580000e-173 617
42 TraesCS6B01G143300 chr6D 93.878 196 12 0 1257 1452 25731901 25732096 2.440000e-76 296
43 TraesCS6B01G143300 chr6D 83.396 265 21 6 1 245 68073949 68073688 1.170000e-54 224
44 TraesCS6B01G143300 chr1D 91.765 510 41 1 2723 3231 316241858 316241349 0.000000e+00 708
45 TraesCS6B01G143300 chr1D 93.367 196 13 0 1257 1452 316243367 316243172 1.130000e-74 291
46 TraesCS6B01G143300 chr2B 85.572 603 68 14 619 1214 191888644 191888054 5.920000e-172 614
47 TraesCS6B01G143300 chr4A 93.659 205 13 0 1227 1431 572492206 572492410 1.130000e-79 307
48 TraesCS6B01G143300 chr4A 89.595 173 16 2 2578 2749 478229027 478229198 5.430000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G143300 chr6B 142982281 142985511 3230 True 5967.0 5967 100.0000 1 3231 1 chr6B.!!$R1 3230
1 TraesCS6B01G143300 chr6B 630832020 630832956 936 True 1153.0 1153 88.8540 1604 2551 1 chr6B.!!$R2 947
2 TraesCS6B01G143300 chr4B 88349661 88350945 1284 True 1801.0 1801 91.9040 1603 2897 1 chr4B.!!$R1 1294
3 TraesCS6B01G143300 chr1A 518114034 518115528 1494 False 1664.0 1664 87.1440 1253 2723 1 chr1A.!!$F2 1470
4 TraesCS6B01G143300 chr1A 542354036 542355460 1424 True 1273.0 1273 83.8820 1509 2841 1 chr1A.!!$R1 1332
5 TraesCS6B01G143300 chr1A 77264379 77265282 903 False 1184.0 1184 90.4400 1652 2551 1 chr1A.!!$F1 899
6 TraesCS6B01G143300 chr4D 470182540 470183659 1119 True 1487.0 1487 90.6500 1604 2723 1 chr4D.!!$R1 1119
7 TraesCS6B01G143300 chr4D 491381490 491384110 2620 False 679.0 713 89.1435 619 3231 2 chr4D.!!$F1 2612
8 TraesCS6B01G143300 chr3D 383170969 383172094 1125 True 1487.0 1487 90.6110 1604 2723 1 chr3D.!!$R1 1119
9 TraesCS6B01G143300 chr3D 388399237 388399832 595 False 632.0 632 86.1160 619 1211 1 chr3D.!!$F3 592
10 TraesCS6B01G143300 chr3D 334133 334730 597 False 614.0 614 85.4790 619 1212 1 chr3D.!!$F1 593
11 TraesCS6B01G143300 chr3D 610058693 610062126 3433 True 504.5 713 92.9195 1257 3231 2 chr3D.!!$R2 1974
12 TraesCS6B01G143300 chr7B 43570990 43572229 1239 False 1471.0 1471 88.1980 1509 2749 1 chr7B.!!$F1 1240
13 TraesCS6B01G143300 chr7B 156406268 156407289 1021 True 1410.0 1410 91.6100 1704 2723 1 chr7B.!!$R1 1019
14 TraesCS6B01G143300 chr7B 730310741 730312237 1496 False 888.0 1478 92.0390 1253 2723 2 chr7B.!!$F3 1470
15 TraesCS6B01G143300 chr7B 156415987 156416779 792 True 469.5 641 89.9130 619 1452 2 chr7B.!!$R3 833
16 TraesCS6B01G143300 chr7D 503836078 503837207 1129 True 1469.0 1469 90.2100 1604 2736 1 chr7D.!!$R1 1132
17 TraesCS6B01G143300 chr7D 525734319 525735501 1182 False 931.0 931 81.5000 1253 2410 1 chr7D.!!$F1 1157
18 TraesCS6B01G143300 chr7D 531065118 531065627 509 True 719.0 719 92.1570 2723 3231 1 chr7D.!!$R2 508
19 TraesCS6B01G143300 chr5A 540623246 540624150 904 True 1201.0 1201 90.7690 1652 2551 1 chr5A.!!$R1 899
20 TraesCS6B01G143300 chr1B 539848166 539849349 1183 True 911.0 911 81.1510 1253 2410 1 chr1B.!!$R1 1157
21 TraesCS6B01G143300 chr2A 38505586 38506759 1173 True 902.0 902 81.0880 1253 2410 1 chr2A.!!$R1 1157
22 TraesCS6B01G143300 chr5D 555413536 555416097 2561 False 753.5 869 88.5120 619 3231 2 chr5D.!!$F3 2612
23 TraesCS6B01G143300 chr5D 333091226 333091735 509 False 719.0 719 92.1570 2723 3231 1 chr5D.!!$F2 508
24 TraesCS6B01G143300 chr5D 552026447 552029045 2598 True 676.5 713 89.0610 619 3231 2 chr5D.!!$R2 2612
25 TraesCS6B01G143300 chr5D 78602137 78602934 797 True 462.0 628 89.8665 619 1452 2 chr5D.!!$R1 833
26 TraesCS6B01G143300 chr6A 117534380 117535185 805 False 811.0 811 84.9450 1601 2410 1 chr6A.!!$F1 809
27 TraesCS6B01G143300 chr6A 85568882 85569462 580 True 438.0 438 80.8370 12 618 1 chr6A.!!$R1 606
28 TraesCS6B01G143300 chr2D 617342855 617343364 509 False 713.0 713 91.9610 2723 3231 1 chr2D.!!$F1 508
29 TraesCS6B01G143300 chr6D 420171216 420173832 2616 False 662.5 708 88.6575 618 3231 2 chr6D.!!$F2 2613
30 TraesCS6B01G143300 chr1D 316241349 316243367 2018 True 499.5 708 92.5660 1257 3231 2 chr1D.!!$R1 1974
31 TraesCS6B01G143300 chr2B 191888054 191888644 590 True 614.0 614 85.5720 619 1214 1 chr2B.!!$R1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 481 0.035343 GCGGTAGGCCCTTCTTTCTT 60.035 55.0 0.00 0.0 34.80 2.52 F
513 518 0.107214 CTGGGCCATCCGCTTAGAAA 60.107 55.0 6.72 0.0 38.76 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2098 1.959282 CTTTGCCTGCTCCTCAAGTTT 59.041 47.619 0.00 0.0 0.00 2.66 R
2281 3877 2.836372 TGCATCAGACTGATCACTCCTT 59.164 45.455 15.24 0.0 34.28 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.455641 TTTAAGGTGTGTTTTCAAGTTCTCA 57.544 32.000 0.00 0.00 0.00 3.27
42 43 7.206981 AGGTGTGTTTTCAAGTTCTCATATG 57.793 36.000 0.00 0.00 0.00 1.78
162 163 2.364970 AGCATGAGTGGTGAGCTATCTC 59.635 50.000 0.00 0.00 39.78 2.75
226 228 7.731054 AGATAACTGAGAAAAATAGATCGCCT 58.269 34.615 0.00 0.00 0.00 5.52
272 276 1.919240 TGACCGTCCGATATGCCTAT 58.081 50.000 0.00 0.00 0.00 2.57
279 283 3.066760 CGTCCGATATGCCTATATGAGCA 59.933 47.826 4.21 4.21 44.45 4.26
280 284 4.615949 GTCCGATATGCCTATATGAGCAG 58.384 47.826 7.45 0.00 43.38 4.24
281 285 4.098654 GTCCGATATGCCTATATGAGCAGT 59.901 45.833 7.45 0.07 43.38 4.40
282 286 4.339530 TCCGATATGCCTATATGAGCAGTC 59.660 45.833 7.45 7.07 43.38 3.51
283 287 4.500545 CCGATATGCCTATATGAGCAGTCC 60.501 50.000 7.45 0.00 43.38 3.85
284 288 4.500545 CGATATGCCTATATGAGCAGTCCC 60.501 50.000 7.45 0.00 43.38 4.46
285 289 2.101640 TGCCTATATGAGCAGTCCCA 57.898 50.000 0.00 0.00 33.08 4.37
286 290 2.624495 TGCCTATATGAGCAGTCCCAT 58.376 47.619 0.00 0.00 33.08 4.00
287 291 2.981784 TGCCTATATGAGCAGTCCCATT 59.018 45.455 0.00 0.00 33.08 3.16
288 292 3.395607 TGCCTATATGAGCAGTCCCATTT 59.604 43.478 0.00 0.00 33.08 2.32
289 293 3.755378 GCCTATATGAGCAGTCCCATTTG 59.245 47.826 0.00 0.00 0.00 2.32
290 294 3.755378 CCTATATGAGCAGTCCCATTTGC 59.245 47.826 0.00 0.00 40.57 3.68
291 295 2.804986 TATGAGCAGTCCCATTTGCA 57.195 45.000 0.00 0.00 42.67 4.08
292 296 1.927487 ATGAGCAGTCCCATTTGCAA 58.073 45.000 0.00 0.00 42.67 4.08
293 297 0.961019 TGAGCAGTCCCATTTGCAAC 59.039 50.000 0.00 0.00 42.67 4.17
294 298 0.961019 GAGCAGTCCCATTTGCAACA 59.039 50.000 0.00 0.00 42.67 3.33
295 299 1.340889 GAGCAGTCCCATTTGCAACAA 59.659 47.619 0.00 0.00 42.67 2.83
296 300 1.342174 AGCAGTCCCATTTGCAACAAG 59.658 47.619 0.00 0.00 42.67 3.16
321 325 4.211374 GTGGTGTTGTAGTACTTTCTGCAG 59.789 45.833 7.63 7.63 32.33 4.41
366 371 4.242475 TCTGTAACATAGGTCTTGTTGCG 58.758 43.478 0.00 0.00 41.00 4.85
367 372 3.994392 CTGTAACATAGGTCTTGTTGCGT 59.006 43.478 0.00 0.00 41.00 5.24
368 373 4.382291 TGTAACATAGGTCTTGTTGCGTT 58.618 39.130 0.00 0.00 41.00 4.84
373 378 6.903883 ACATAGGTCTTGTTGCGTTAATAG 57.096 37.500 0.00 0.00 0.00 1.73
381 386 5.407387 TCTTGTTGCGTTAATAGGTCTTGTC 59.593 40.000 0.00 0.00 0.00 3.18
385 390 2.281762 GCGTTAATAGGTCTTGTCGCAG 59.718 50.000 0.00 0.00 41.59 5.18
391 396 4.744795 ATAGGTCTTGTCGCAGATTTCT 57.255 40.909 0.00 0.00 40.67 2.52
392 397 3.409026 AGGTCTTGTCGCAGATTTCTT 57.591 42.857 0.00 0.00 40.67 2.52
443 448 3.212685 CATGCCCCTTTTGCAAAAAGAA 58.787 40.909 23.92 11.82 42.92 2.52
444 449 3.574354 TGCCCCTTTTGCAAAAAGAAT 57.426 38.095 23.92 0.00 35.40 2.40
460 465 2.950433 AGAATCTTGTTGCAATTGCGG 58.050 42.857 24.58 12.18 45.83 5.69
461 466 2.297033 AGAATCTTGTTGCAATTGCGGT 59.703 40.909 24.58 4.04 45.83 5.68
463 468 2.987413 TCTTGTTGCAATTGCGGTAG 57.013 45.000 24.58 17.76 45.83 3.18
470 475 2.004808 GCAATTGCGGTAGGCCCTTC 62.005 60.000 15.87 0.00 42.61 3.46
476 481 0.035343 GCGGTAGGCCCTTCTTTCTT 60.035 55.000 0.00 0.00 34.80 2.52
487 492 2.680339 CCTTCTTTCTTCTTCCATCGGC 59.320 50.000 0.00 0.00 0.00 5.54
491 496 2.859165 TTCTTCTTCCATCGGCTTGT 57.141 45.000 0.00 0.00 0.00 3.16
497 502 0.322456 TTCCATCGGCTTGTTCCTGG 60.322 55.000 0.00 0.00 0.00 4.45
506 511 3.936772 TTGTTCCTGGGCCATCCGC 62.937 63.158 6.72 0.00 38.76 5.54
507 512 4.115199 GTTCCTGGGCCATCCGCT 62.115 66.667 6.72 0.00 38.76 5.52
508 513 3.338250 TTCCTGGGCCATCCGCTT 61.338 61.111 6.72 0.00 38.76 4.68
509 514 1.998438 TTCCTGGGCCATCCGCTTA 60.998 57.895 6.72 0.00 38.76 3.09
510 515 1.983119 TTCCTGGGCCATCCGCTTAG 61.983 60.000 6.72 0.00 38.76 2.18
511 516 2.443394 CCTGGGCCATCCGCTTAGA 61.443 63.158 6.72 0.00 38.76 2.10
512 517 1.526887 CTGGGCCATCCGCTTAGAA 59.473 57.895 6.72 0.00 38.76 2.10
513 518 0.107214 CTGGGCCATCCGCTTAGAAA 60.107 55.000 6.72 0.00 38.76 2.52
514 519 0.550914 TGGGCCATCCGCTTAGAAAT 59.449 50.000 0.00 0.00 38.76 2.17
515 520 1.771854 TGGGCCATCCGCTTAGAAATA 59.228 47.619 0.00 0.00 38.76 1.40
516 521 2.224523 TGGGCCATCCGCTTAGAAATAG 60.225 50.000 0.00 0.00 38.76 1.73
517 522 2.038557 GGGCCATCCGCTTAGAAATAGA 59.961 50.000 4.39 0.00 37.74 1.98
518 523 3.307762 GGGCCATCCGCTTAGAAATAGAT 60.308 47.826 4.39 0.00 37.74 1.98
519 524 3.935828 GGCCATCCGCTTAGAAATAGATC 59.064 47.826 0.00 0.00 37.74 2.75
520 525 3.614616 GCCATCCGCTTAGAAATAGATCG 59.385 47.826 0.00 0.00 0.00 3.69
521 526 4.177026 CCATCCGCTTAGAAATAGATCGG 58.823 47.826 0.00 0.00 37.00 4.18
522 527 4.082190 CCATCCGCTTAGAAATAGATCGGA 60.082 45.833 2.89 2.89 46.59 4.55
523 528 5.923733 ATCCGCTTAGAAATAGATCGGAT 57.076 39.130 7.36 7.36 46.30 4.18
524 529 5.060662 TCCGCTTAGAAATAGATCGGATG 57.939 43.478 0.00 0.00 39.36 3.51
525 530 4.765339 TCCGCTTAGAAATAGATCGGATGA 59.235 41.667 0.00 0.00 39.36 2.92
526 531 4.859798 CCGCTTAGAAATAGATCGGATGAC 59.140 45.833 0.00 0.00 37.79 3.06
527 532 4.859798 CGCTTAGAAATAGATCGGATGACC 59.140 45.833 0.00 0.00 0.00 4.02
528 533 5.564848 CGCTTAGAAATAGATCGGATGACCA 60.565 44.000 0.00 0.00 35.59 4.02
529 534 5.635700 GCTTAGAAATAGATCGGATGACCAC 59.364 44.000 0.00 0.00 35.59 4.16
530 535 4.244425 AGAAATAGATCGGATGACCACG 57.756 45.455 0.00 0.00 35.59 4.94
531 536 3.005897 AGAAATAGATCGGATGACCACGG 59.994 47.826 0.00 0.00 35.59 4.94
532 537 2.287977 ATAGATCGGATGACCACGGA 57.712 50.000 0.00 0.00 35.59 4.69
533 538 1.315690 TAGATCGGATGACCACGGAC 58.684 55.000 0.00 0.00 35.59 4.79
534 539 0.683179 AGATCGGATGACCACGGACA 60.683 55.000 0.00 0.00 35.59 4.02
535 540 0.174845 GATCGGATGACCACGGACAA 59.825 55.000 0.00 0.00 35.59 3.18
536 541 0.175760 ATCGGATGACCACGGACAAG 59.824 55.000 0.00 0.00 35.59 3.16
537 542 1.447838 CGGATGACCACGGACAAGG 60.448 63.158 0.00 0.00 35.59 3.61
538 543 1.884075 CGGATGACCACGGACAAGGA 61.884 60.000 0.00 0.00 35.59 3.36
539 544 0.391263 GGATGACCACGGACAAGGAC 60.391 60.000 0.00 0.00 35.97 3.85
540 545 0.736325 GATGACCACGGACAAGGACG 60.736 60.000 0.00 0.00 0.00 4.79
541 546 2.048503 GACCACGGACAAGGACGG 60.049 66.667 0.00 0.00 0.00 4.79
542 547 4.309950 ACCACGGACAAGGACGGC 62.310 66.667 0.00 0.00 0.00 5.68
544 549 4.351938 CACGGACAAGGACGGCGA 62.352 66.667 16.62 0.00 0.00 5.54
545 550 3.379445 ACGGACAAGGACGGCGAT 61.379 61.111 16.62 0.00 0.00 4.58
546 551 2.885644 CGGACAAGGACGGCGATG 60.886 66.667 16.62 9.53 0.00 3.84
547 552 3.195698 GGACAAGGACGGCGATGC 61.196 66.667 16.62 2.98 0.00 3.91
548 553 2.434185 GACAAGGACGGCGATGCA 60.434 61.111 16.62 0.00 0.00 3.96
549 554 2.740714 GACAAGGACGGCGATGCAC 61.741 63.158 16.62 0.00 0.00 4.57
550 555 2.741985 CAAGGACGGCGATGCACA 60.742 61.111 16.62 0.00 0.00 4.57
551 556 2.434884 AAGGACGGCGATGCACAG 60.435 61.111 16.62 0.00 0.00 3.66
552 557 3.958147 AAGGACGGCGATGCACAGG 62.958 63.158 16.62 0.00 0.00 4.00
553 558 4.451150 GGACGGCGATGCACAGGA 62.451 66.667 16.62 0.00 0.00 3.86
554 559 2.202932 GACGGCGATGCACAGGAT 60.203 61.111 16.62 0.00 0.00 3.24
555 560 2.202932 ACGGCGATGCACAGGATC 60.203 61.111 16.62 0.00 0.00 3.36
556 561 2.969238 CGGCGATGCACAGGATCC 60.969 66.667 2.48 2.48 0.00 3.36
557 562 2.969238 GGCGATGCACAGGATCCG 60.969 66.667 5.98 3.99 0.00 4.18
558 563 2.202932 GCGATGCACAGGATCCGT 60.203 61.111 5.98 4.69 0.00 4.69
559 564 2.240500 GCGATGCACAGGATCCGTC 61.241 63.158 5.98 3.33 0.00 4.79
560 565 1.141665 CGATGCACAGGATCCGTCA 59.858 57.895 5.98 8.30 0.00 4.35
561 566 0.873312 CGATGCACAGGATCCGTCAG 60.873 60.000 5.98 0.39 0.00 3.51
562 567 0.531532 GATGCACAGGATCCGTCAGG 60.532 60.000 5.98 0.00 39.46 3.86
563 568 1.267574 ATGCACAGGATCCGTCAGGT 61.268 55.000 5.98 0.00 39.05 4.00
564 569 1.448540 GCACAGGATCCGTCAGGTG 60.449 63.158 5.98 11.80 39.05 4.00
565 570 1.448540 CACAGGATCCGTCAGGTGC 60.449 63.158 5.98 0.00 39.05 5.01
566 571 1.913262 ACAGGATCCGTCAGGTGCA 60.913 57.895 5.98 0.00 39.05 4.57
567 572 1.267574 ACAGGATCCGTCAGGTGCAT 61.268 55.000 5.98 0.00 39.05 3.96
568 573 0.107508 CAGGATCCGTCAGGTGCATT 60.108 55.000 5.98 0.00 39.05 3.56
569 574 0.620556 AGGATCCGTCAGGTGCATTT 59.379 50.000 5.98 0.00 39.05 2.32
570 575 1.004745 AGGATCCGTCAGGTGCATTTT 59.995 47.619 5.98 0.00 39.05 1.82
571 576 1.401905 GGATCCGTCAGGTGCATTTTC 59.598 52.381 0.00 0.00 39.05 2.29
572 577 1.401905 GATCCGTCAGGTGCATTTTCC 59.598 52.381 0.00 0.00 39.05 3.13
573 578 0.400213 TCCGTCAGGTGCATTTTCCT 59.600 50.000 0.00 0.00 39.05 3.36
574 579 1.202879 TCCGTCAGGTGCATTTTCCTT 60.203 47.619 0.00 0.00 39.05 3.36
575 580 2.039216 TCCGTCAGGTGCATTTTCCTTA 59.961 45.455 0.00 0.00 39.05 2.69
576 581 2.161609 CCGTCAGGTGCATTTTCCTTAC 59.838 50.000 0.00 0.00 30.91 2.34
577 582 2.811431 CGTCAGGTGCATTTTCCTTACA 59.189 45.455 6.31 0.00 30.84 2.41
578 583 3.252215 CGTCAGGTGCATTTTCCTTACAA 59.748 43.478 6.31 0.00 30.84 2.41
579 584 4.261405 CGTCAGGTGCATTTTCCTTACAAA 60.261 41.667 6.31 0.00 30.84 2.83
580 585 5.596845 GTCAGGTGCATTTTCCTTACAAAA 58.403 37.500 0.00 0.00 30.84 2.44
581 586 6.045955 GTCAGGTGCATTTTCCTTACAAAAA 58.954 36.000 0.00 0.00 30.84 1.94
582 587 6.705825 GTCAGGTGCATTTTCCTTACAAAAAT 59.294 34.615 0.00 0.00 36.91 1.82
583 588 7.226523 GTCAGGTGCATTTTCCTTACAAAAATT 59.773 33.333 0.00 0.00 34.84 1.82
584 589 8.424918 TCAGGTGCATTTTCCTTACAAAAATTA 58.575 29.630 0.00 0.00 34.84 1.40
585 590 9.218440 CAGGTGCATTTTCCTTACAAAAATTAT 57.782 29.630 0.00 0.00 34.84 1.28
586 591 9.218440 AGGTGCATTTTCCTTACAAAAATTATG 57.782 29.630 0.00 0.00 34.84 1.90
587 592 7.962373 GGTGCATTTTCCTTACAAAAATTATGC 59.038 33.333 0.00 0.00 34.84 3.14
588 593 7.687757 GTGCATTTTCCTTACAAAAATTATGCG 59.312 33.333 0.00 0.00 34.84 4.73
589 594 7.148507 TGCATTTTCCTTACAAAAATTATGCGG 60.149 33.333 0.00 0.00 34.84 5.69
590 595 7.064016 GCATTTTCCTTACAAAAATTATGCGGA 59.936 33.333 0.00 0.00 34.84 5.54
591 596 8.930760 CATTTTCCTTACAAAAATTATGCGGAA 58.069 29.630 0.00 0.00 34.84 4.30
592 597 8.888579 TTTTCCTTACAAAAATTATGCGGAAA 57.111 26.923 13.22 13.22 36.53 3.13
593 598 7.876896 TTCCTTACAAAAATTATGCGGAAAC 57.123 32.000 0.00 0.00 0.00 2.78
594 599 6.982852 TCCTTACAAAAATTATGCGGAAACA 58.017 32.000 0.00 0.00 0.00 2.83
595 600 7.434492 TCCTTACAAAAATTATGCGGAAACAA 58.566 30.769 0.00 0.00 0.00 2.83
596 601 8.091449 TCCTTACAAAAATTATGCGGAAACAAT 58.909 29.630 0.00 0.00 0.00 2.71
597 602 8.167985 CCTTACAAAAATTATGCGGAAACAATG 58.832 33.333 0.00 0.00 0.00 2.82
598 603 5.925907 ACAAAAATTATGCGGAAACAATGC 58.074 33.333 0.00 0.00 0.00 3.56
599 604 5.468072 ACAAAAATTATGCGGAAACAATGCA 59.532 32.000 0.00 0.00 43.67 3.96
600 605 5.529014 AAAATTATGCGGAAACAATGCAC 57.471 34.783 0.00 0.00 42.11 4.57
601 606 3.865011 ATTATGCGGAAACAATGCACA 57.135 38.095 0.00 0.00 42.11 4.57
602 607 3.650070 TTATGCGGAAACAATGCACAA 57.350 38.095 0.00 0.00 42.11 3.33
603 608 2.522836 ATGCGGAAACAATGCACAAA 57.477 40.000 0.00 0.00 42.11 2.83
604 609 1.850377 TGCGGAAACAATGCACAAAG 58.150 45.000 0.00 0.00 32.86 2.77
605 610 1.135915 TGCGGAAACAATGCACAAAGT 59.864 42.857 0.00 0.00 32.86 2.66
606 611 1.522258 GCGGAAACAATGCACAAAGTG 59.478 47.619 0.00 0.00 36.51 3.16
607 612 2.808244 CGGAAACAATGCACAAAGTGT 58.192 42.857 0.00 0.00 35.75 3.55
679 684 5.370679 GTCCCACAGAACTACCACTTTTTA 58.629 41.667 0.00 0.00 0.00 1.52
741 747 8.621286 CATGACTAAAAACTACCAAGTTGACTT 58.379 33.333 3.87 0.00 45.37 3.01
779 785 8.553459 ACTATGTTTAACTCCATTTCTGACAG 57.447 34.615 0.00 0.00 0.00 3.51
780 786 5.689383 TGTTTAACTCCATTTCTGACAGC 57.311 39.130 0.00 0.00 0.00 4.40
791 797 3.618780 CTGACAGCAGAGGCCCACC 62.619 68.421 0.00 0.00 45.17 4.61
963 978 2.025416 ACTCTCTGCTCTCCTCTGCTTA 60.025 50.000 0.00 0.00 0.00 3.09
973 988 5.728471 CTCTCCTCTGCTTATGTTTCTTCA 58.272 41.667 0.00 0.00 0.00 3.02
978 993 6.070596 TCCTCTGCTTATGTTTCTTCATCTCA 60.071 38.462 0.00 0.00 0.00 3.27
1032 1047 0.951040 CCAACAGCAACGAGACCTCC 60.951 60.000 0.00 0.00 0.00 4.30
1100 1115 4.924462 GGAGTACTTTGTAAGTCAGCTCAC 59.076 45.833 0.00 0.00 41.77 3.51
1104 1119 4.877282 ACTTTGTAAGTCAGCTCACTCTC 58.123 43.478 0.00 0.00 37.02 3.20
1120 1135 2.509964 ACTCTCTTCTCTCCCTCTCCTC 59.490 54.545 0.00 0.00 0.00 3.71
1123 1138 3.202151 TCTCTTCTCTCCCTCTCCTCTTC 59.798 52.174 0.00 0.00 0.00 2.87
1124 1139 3.197983 TCTTCTCTCCCTCTCCTCTTCT 58.802 50.000 0.00 0.00 0.00 2.85
1125 1140 3.053693 TCTTCTCTCCCTCTCCTCTTCTG 60.054 52.174 0.00 0.00 0.00 3.02
1131 1146 2.099405 CCCTCTCCTCTTCTGTCTGTC 58.901 57.143 0.00 0.00 0.00 3.51
1145 1160 2.928364 TGTCTGTCCTAGGGTTAGGGTA 59.072 50.000 9.46 0.00 45.60 3.69
1164 1179 6.194967 AGGGTAAGGGTTTGAAGATATTTGG 58.805 40.000 0.00 0.00 0.00 3.28
1227 1244 9.474920 TGATATATATATGTGTGTGTGTGTGTG 57.525 33.333 10.03 0.00 0.00 3.82
1228 1245 9.476202 GATATATATATGTGTGTGTGTGTGTGT 57.524 33.333 10.03 0.00 0.00 3.72
1229 1246 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
1230 1247 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
1231 1248 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1232 1249 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1233 1250 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1234 1251 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1235 1252 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1236 1253 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1237 1254 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1238 1255 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1239 1256 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1240 1257 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1241 1258 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1242 1259 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1243 1260 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1244 1261 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1245 1262 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1246 1263 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1247 1264 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1248 1265 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1249 1266 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1250 1267 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1251 1268 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1291 1308 4.800914 GCAAACTCCTGACACTGTGATAGT 60.801 45.833 15.86 7.05 41.36 2.12
1393 1410 0.819259 GAAGGCACTGACACTGGCAA 60.819 55.000 10.50 0.00 40.86 4.52
1401 1418 1.998315 CTGACACTGGCAAGAGATTCG 59.002 52.381 0.00 0.00 0.00 3.34
1446 1463 3.573967 GGACCAAGTTGTCATGGATTTGT 59.426 43.478 1.45 0.00 39.12 2.83
1452 1469 6.215121 CAAGTTGTCATGGATTTGTTTAGCA 58.785 36.000 0.00 0.00 0.00 3.49
1455 1505 7.538575 AGTTGTCATGGATTTGTTTAGCATAC 58.461 34.615 0.00 0.00 0.00 2.39
1464 1516 8.044309 TGGATTTGTTTAGCATACTAGCTGTAA 58.956 33.333 0.00 0.00 46.11 2.41
1465 1517 8.889717 GGATTTGTTTAGCATACTAGCTGTAAA 58.110 33.333 0.00 0.00 46.11 2.01
1496 1548 9.986833 AATTTTTCTGAAGTGTAAAAACATTGC 57.013 25.926 0.00 0.00 35.56 3.56
1497 1549 8.770438 TTTTTCTGAAGTGTAAAAACATTGCT 57.230 26.923 0.00 0.00 29.61 3.91
1498 1550 9.862371 TTTTTCTGAAGTGTAAAAACATTGCTA 57.138 25.926 0.00 0.00 29.61 3.49
1500 1552 9.462174 TTTCTGAAGTGTAAAAACATTGCTATG 57.538 29.630 6.59 6.59 37.79 2.23
1501 1553 8.165239 TCTGAAGTGTAAAAACATTGCTATGT 57.835 30.769 8.03 8.03 46.85 2.29
1502 1554 8.289618 TCTGAAGTGTAAAAACATTGCTATGTC 58.710 33.333 14.18 2.46 44.14 3.06
1503 1555 7.367285 TGAAGTGTAAAAACATTGCTATGTCC 58.633 34.615 14.18 2.03 44.14 4.02
1504 1556 6.892658 AGTGTAAAAACATTGCTATGTCCA 57.107 33.333 14.18 4.34 44.14 4.02
1505 1557 6.677913 AGTGTAAAAACATTGCTATGTCCAC 58.322 36.000 14.18 14.13 44.14 4.02
1506 1558 6.490040 AGTGTAAAAACATTGCTATGTCCACT 59.510 34.615 14.18 15.73 44.14 4.00
1507 1559 6.801862 GTGTAAAAACATTGCTATGTCCACTC 59.198 38.462 14.18 7.30 44.14 3.51
1593 1665 6.947464 TGTAATTTTAGGTGAGAGCTAGCTT 58.053 36.000 20.42 8.93 29.05 3.74
1596 1668 4.891992 TTTAGGTGAGAGCTAGCTTGTT 57.108 40.909 20.42 7.90 29.05 2.83
1841 1963 4.949856 AGGTTGCAAAACTGAAGAAGAAGA 59.050 37.500 0.00 0.00 46.40 2.87
1855 1977 5.930837 AGAAGAAGATTGATTCTCTCGGT 57.069 39.130 0.00 0.00 38.59 4.69
1856 1978 5.659463 AGAAGAAGATTGATTCTCTCGGTG 58.341 41.667 0.00 0.00 38.59 4.94
1861 1983 4.942852 AGATTGATTCTCTCGGTGATCAC 58.057 43.478 17.91 17.91 0.00 3.06
1942 2064 3.688235 TCATGACATGGATTGCACAAGA 58.312 40.909 15.37 0.00 0.00 3.02
1943 2065 4.080687 TCATGACATGGATTGCACAAGAA 58.919 39.130 15.37 0.00 0.00 2.52
1976 2098 7.775093 TCAATGAACTGAAGGAGAAGAAAAAGA 59.225 33.333 0.00 0.00 0.00 2.52
2411 4031 0.969149 TGCCCTGATCTATACTGCCG 59.031 55.000 0.00 0.00 0.00 5.69
2433 4054 6.035866 GCCGAAATATTATCTGATGCTGAGAG 59.964 42.308 0.00 0.00 0.00 3.20
2535 4158 7.834068 TGCTGAGATATGTTTACTTCAGAAC 57.166 36.000 3.68 0.00 0.00 3.01
2537 4160 7.331934 TGCTGAGATATGTTTACTTCAGAACAC 59.668 37.037 3.68 0.00 38.46 3.32
2538 4161 7.331934 GCTGAGATATGTTTACTTCAGAACACA 59.668 37.037 3.68 0.00 38.46 3.72
2546 4169 6.821160 TGTTTACTTCAGAACACACTTCATCA 59.179 34.615 0.00 0.00 31.30 3.07
2550 4173 3.732212 TCAGAACACACTTCATCACAGG 58.268 45.455 0.00 0.00 0.00 4.00
2553 4176 1.888215 ACACACTTCATCACAGGCTG 58.112 50.000 14.16 14.16 0.00 4.85
2558 4181 0.809385 CTTCATCACAGGCTGCAAGG 59.191 55.000 15.89 4.63 0.00 3.61
2567 4190 1.541588 CAGGCTGCAAGGAAGGTAAAC 59.458 52.381 0.00 0.00 0.00 2.01
2660 4338 4.774726 AGTCCTACATAGATAGCACATGGG 59.225 45.833 0.00 0.00 0.00 4.00
2686 4398 7.166473 GCACTGAAATTGTTCAAAGACACTTAG 59.834 37.037 0.00 0.00 43.18 2.18
2692 4404 8.682936 AATTGTTCAAAGACACTTAGACTGAT 57.317 30.769 0.00 0.00 0.00 2.90
2698 4410 7.306213 TCAAAGACACTTAGACTGATAGAACG 58.694 38.462 0.00 0.00 0.00 3.95
2794 4607 1.304713 CCCTGCCCTGCTTTGTGAT 60.305 57.895 0.00 0.00 0.00 3.06
2800 4613 1.612726 GCCCTGCTTTGTGATCTGACT 60.613 52.381 0.00 0.00 0.00 3.41
2802 4615 2.289882 CCCTGCTTTGTGATCTGACTGA 60.290 50.000 0.00 0.00 0.00 3.41
2870 4683 2.556189 CCTCTTCGTCTCCATCGATGAT 59.444 50.000 26.86 0.00 39.44 2.45
2874 4687 5.003804 TCTTCGTCTCCATCGATGATGATA 58.996 41.667 26.86 12.48 42.09 2.15
2903 4716 4.595538 ACGTCGGCGAGCCAACAA 62.596 61.111 20.03 0.00 42.00 2.83
2905 4718 1.807981 CGTCGGCGAGCCAACAATA 60.808 57.895 11.20 0.00 41.33 1.90
2951 4764 0.529773 TCGTCATCGTTGCCCATAGC 60.530 55.000 0.00 0.00 39.14 2.97
2961 4774 3.297391 GCCCATAGCAGCTGTAGTC 57.703 57.895 16.64 0.00 42.97 2.59
2977 4791 1.617322 AGTCGTACTTGTGCTGGAGA 58.383 50.000 0.00 0.00 0.00 3.71
2986 4800 3.963374 ACTTGTGCTGGAGAGATATAGCA 59.037 43.478 0.00 0.00 0.00 3.49
3014 4828 3.322466 CACCGTTCCCTCTGCCCT 61.322 66.667 0.00 0.00 0.00 5.19
3020 4834 1.924939 TTCCCTCTGCCCTGCATCA 60.925 57.895 0.00 0.00 38.13 3.07
3071 4885 1.888215 ACATGTCGATGGGCATGATC 58.112 50.000 26.42 0.00 43.60 2.92
3106 4920 0.182061 CCATAGTGCTGGTCCATGCT 59.818 55.000 12.62 5.40 0.00 3.79
3118 4932 0.540454 TCCATGCTCTGCTTCTCCTG 59.460 55.000 0.00 0.00 0.00 3.86
3125 4939 1.543802 CTCTGCTTCTCCTGAGTCGTT 59.456 52.381 0.00 0.00 0.00 3.85
3145 4959 2.902608 TGCCTTCTTCCTCACCTCTTA 58.097 47.619 0.00 0.00 0.00 2.10
3151 4965 5.130145 CCTTCTTCCTCACCTCTTATGATGT 59.870 44.000 0.00 0.00 0.00 3.06
3166 4980 1.412710 TGATGTATCCACGAGCCCTTC 59.587 52.381 0.00 0.00 0.00 3.46
3186 5000 0.461135 TGCGCTGCTGTATCTCATGA 59.539 50.000 9.73 0.00 0.00 3.07
3209 5023 6.127338 TGACAATCTTCATGTAGTCGAGGAAT 60.127 38.462 0.00 0.00 0.00 3.01
3223 5037 1.677052 GAGGAATAGGTCTTCGTCGCT 59.323 52.381 0.00 0.00 32.36 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.877178 AAACACACCTTAAAACAACATATTTGA 57.123 25.926 5.11 0.00 0.00 2.69
4 5 9.877178 TGAAAACACACCTTAAAACAACATATT 57.123 25.926 0.00 0.00 0.00 1.28
5 6 9.877178 TTGAAAACACACCTTAAAACAACATAT 57.123 25.926 0.00 0.00 0.00 1.78
6 7 9.360093 CTTGAAAACACACCTTAAAACAACATA 57.640 29.630 0.00 0.00 0.00 2.29
7 8 7.875554 ACTTGAAAACACACCTTAAAACAACAT 59.124 29.630 0.00 0.00 0.00 2.71
8 9 7.210873 ACTTGAAAACACACCTTAAAACAACA 58.789 30.769 0.00 0.00 0.00 3.33
9 10 7.646446 ACTTGAAAACACACCTTAAAACAAC 57.354 32.000 0.00 0.00 0.00 3.32
10 11 8.145122 AGAACTTGAAAACACACCTTAAAACAA 58.855 29.630 0.00 0.00 0.00 2.83
89 90 9.979897 TTGGTCCTAGTACTACTCTGTATTAAA 57.020 33.333 0.00 0.00 0.00 1.52
136 137 2.502947 AGCTCACCACTCATGCTGAATA 59.497 45.455 0.00 0.00 32.32 1.75
141 142 2.364970 GAGATAGCTCACCACTCATGCT 59.635 50.000 2.36 0.00 40.96 3.79
168 169 0.454600 TAGCGTCGCTCCGAGATTTT 59.545 50.000 25.50 0.00 40.44 1.82
171 172 2.883468 CGTAGCGTCGCTCCGAGAT 61.883 63.158 25.64 2.01 40.32 2.75
189 191 5.348986 TCTCAGTTATCTATTGGTTGACGC 58.651 41.667 0.00 0.00 0.00 5.19
201 203 7.731054 AGGCGATCTATTTTTCTCAGTTATCT 58.269 34.615 0.00 0.00 0.00 1.98
218 220 0.692419 AATGGTCAGGGAGGCGATCT 60.692 55.000 0.00 0.00 0.00 2.75
219 221 0.533755 CAATGGTCAGGGAGGCGATC 60.534 60.000 0.00 0.00 0.00 3.69
220 222 1.528824 CAATGGTCAGGGAGGCGAT 59.471 57.895 0.00 0.00 0.00 4.58
221 223 2.989639 CAATGGTCAGGGAGGCGA 59.010 61.111 0.00 0.00 0.00 5.54
250 254 1.416401 AGGCATATCGGACGGTCATTT 59.584 47.619 10.76 0.00 0.00 2.32
272 276 2.754552 GTTGCAAATGGGACTGCTCATA 59.245 45.455 0.00 0.00 39.38 2.15
279 283 2.624838 CACTCTTGTTGCAAATGGGACT 59.375 45.455 0.00 0.00 0.00 3.85
280 284 2.288395 CCACTCTTGTTGCAAATGGGAC 60.288 50.000 0.00 0.00 0.00 4.46
281 285 1.962807 CCACTCTTGTTGCAAATGGGA 59.037 47.619 0.00 0.00 0.00 4.37
282 286 1.688197 ACCACTCTTGTTGCAAATGGG 59.312 47.619 0.00 0.00 0.00 4.00
283 287 2.101249 ACACCACTCTTGTTGCAAATGG 59.899 45.455 0.00 5.20 0.00 3.16
284 288 3.441496 ACACCACTCTTGTTGCAAATG 57.559 42.857 0.00 0.00 0.00 2.32
285 289 3.784338 CAACACCACTCTTGTTGCAAAT 58.216 40.909 0.00 0.00 45.36 2.32
286 290 3.229276 CAACACCACTCTTGTTGCAAA 57.771 42.857 0.00 0.00 45.36 3.68
287 291 2.937469 CAACACCACTCTTGTTGCAA 57.063 45.000 0.00 0.00 45.36 4.08
291 295 5.609533 AGTACTACAACACCACTCTTGTT 57.390 39.130 0.00 0.00 37.69 2.83
292 296 5.609533 AAGTACTACAACACCACTCTTGT 57.390 39.130 0.00 0.00 34.89 3.16
293 297 6.201044 CAGAAAGTACTACAACACCACTCTTG 59.799 42.308 0.00 0.00 0.00 3.02
294 298 6.281405 CAGAAAGTACTACAACACCACTCTT 58.719 40.000 0.00 0.00 0.00 2.85
295 299 5.739358 GCAGAAAGTACTACAACACCACTCT 60.739 44.000 0.00 0.00 0.00 3.24
296 300 4.448060 GCAGAAAGTACTACAACACCACTC 59.552 45.833 0.00 0.00 0.00 3.51
309 313 2.028567 AGACCTCTGCTGCAGAAAGTAC 60.029 50.000 30.00 21.25 40.18 2.73
311 315 1.055040 AGACCTCTGCTGCAGAAAGT 58.945 50.000 30.00 27.86 40.18 2.66
342 346 5.351465 CGCAACAAGACCTATGTTACAGATT 59.649 40.000 0.00 0.00 38.90 2.40
343 347 4.870426 CGCAACAAGACCTATGTTACAGAT 59.130 41.667 0.00 0.00 38.90 2.90
353 358 5.186409 AGACCTATTAACGCAACAAGACCTA 59.814 40.000 0.00 0.00 0.00 3.08
355 360 4.251268 AGACCTATTAACGCAACAAGACC 58.749 43.478 0.00 0.00 0.00 3.85
359 364 4.150980 CGACAAGACCTATTAACGCAACAA 59.849 41.667 0.00 0.00 0.00 2.83
366 371 6.535508 AGAAATCTGCGACAAGACCTATTAAC 59.464 38.462 0.00 0.00 0.00 2.01
367 372 6.640518 AGAAATCTGCGACAAGACCTATTAA 58.359 36.000 0.00 0.00 0.00 1.40
368 373 6.222038 AGAAATCTGCGACAAGACCTATTA 57.778 37.500 0.00 0.00 0.00 0.98
373 378 4.489679 AAAAGAAATCTGCGACAAGACC 57.510 40.909 0.00 0.00 0.00 3.85
426 431 5.125356 ACAAGATTCTTTTTGCAAAAGGGG 58.875 37.500 27.57 19.45 0.00 4.79
443 448 2.164219 CCTACCGCAATTGCAACAAGAT 59.836 45.455 28.77 2.71 42.21 2.40
444 449 1.539388 CCTACCGCAATTGCAACAAGA 59.461 47.619 28.77 7.61 42.21 3.02
460 465 3.009143 TGGAAGAAGAAAGAAGGGCCTAC 59.991 47.826 6.41 0.00 0.00 3.18
461 466 3.256704 TGGAAGAAGAAAGAAGGGCCTA 58.743 45.455 6.41 0.00 0.00 3.93
463 468 2.586648 TGGAAGAAGAAAGAAGGGCC 57.413 50.000 0.00 0.00 0.00 5.80
470 475 3.077359 ACAAGCCGATGGAAGAAGAAAG 58.923 45.455 0.00 0.00 0.00 2.62
476 481 0.984230 AGGAACAAGCCGATGGAAGA 59.016 50.000 0.00 0.00 0.00 2.87
487 492 1.750399 CGGATGGCCCAGGAACAAG 60.750 63.158 0.00 0.00 34.14 3.16
491 496 1.983119 CTAAGCGGATGGCCCAGGAA 61.983 60.000 0.00 0.00 45.17 3.36
497 502 3.402628 TCTATTTCTAAGCGGATGGCC 57.597 47.619 0.00 0.00 45.17 5.36
506 511 5.859114 CGTGGTCATCCGATCTATTTCTAAG 59.141 44.000 0.00 0.00 36.30 2.18
507 512 5.278808 CCGTGGTCATCCGATCTATTTCTAA 60.279 44.000 0.00 0.00 36.30 2.10
508 513 4.217767 CCGTGGTCATCCGATCTATTTCTA 59.782 45.833 0.00 0.00 36.30 2.10
509 514 3.005897 CCGTGGTCATCCGATCTATTTCT 59.994 47.826 0.00 0.00 36.30 2.52
510 515 3.005472 TCCGTGGTCATCCGATCTATTTC 59.995 47.826 0.00 0.00 36.30 2.17
511 516 2.963101 TCCGTGGTCATCCGATCTATTT 59.037 45.455 0.00 0.00 36.30 1.40
512 517 2.296471 GTCCGTGGTCATCCGATCTATT 59.704 50.000 0.00 0.00 36.30 1.73
513 518 1.887198 GTCCGTGGTCATCCGATCTAT 59.113 52.381 0.00 0.00 36.30 1.98
514 519 1.315690 GTCCGTGGTCATCCGATCTA 58.684 55.000 0.00 0.00 36.30 1.98
515 520 0.683179 TGTCCGTGGTCATCCGATCT 60.683 55.000 0.00 0.00 36.30 2.75
516 521 0.174845 TTGTCCGTGGTCATCCGATC 59.825 55.000 0.00 0.00 36.30 3.69
517 522 0.175760 CTTGTCCGTGGTCATCCGAT 59.824 55.000 0.00 0.00 36.30 4.18
518 523 1.589630 CTTGTCCGTGGTCATCCGA 59.410 57.895 0.00 0.00 36.30 4.55
519 524 1.447838 CCTTGTCCGTGGTCATCCG 60.448 63.158 0.00 0.00 36.30 4.18
520 525 0.391263 GTCCTTGTCCGTGGTCATCC 60.391 60.000 0.00 0.00 0.00 3.51
521 526 0.736325 CGTCCTTGTCCGTGGTCATC 60.736 60.000 0.00 0.00 0.00 2.92
522 527 1.292223 CGTCCTTGTCCGTGGTCAT 59.708 57.895 0.00 0.00 0.00 3.06
523 528 2.732016 CGTCCTTGTCCGTGGTCA 59.268 61.111 0.00 0.00 0.00 4.02
524 529 2.048503 CCGTCCTTGTCCGTGGTC 60.049 66.667 0.00 0.00 0.00 4.02
525 530 4.309950 GCCGTCCTTGTCCGTGGT 62.310 66.667 0.00 0.00 0.00 4.16
527 532 3.642778 ATCGCCGTCCTTGTCCGTG 62.643 63.158 0.00 0.00 0.00 4.94
528 533 3.379445 ATCGCCGTCCTTGTCCGT 61.379 61.111 0.00 0.00 0.00 4.69
529 534 2.885644 CATCGCCGTCCTTGTCCG 60.886 66.667 0.00 0.00 0.00 4.79
530 535 3.195698 GCATCGCCGTCCTTGTCC 61.196 66.667 0.00 0.00 0.00 4.02
531 536 2.434185 TGCATCGCCGTCCTTGTC 60.434 61.111 0.00 0.00 0.00 3.18
532 537 2.742372 GTGCATCGCCGTCCTTGT 60.742 61.111 0.00 0.00 0.00 3.16
533 538 2.741985 TGTGCATCGCCGTCCTTG 60.742 61.111 0.00 0.00 0.00 3.61
534 539 2.434884 CTGTGCATCGCCGTCCTT 60.435 61.111 0.00 0.00 0.00 3.36
535 540 4.457496 CCTGTGCATCGCCGTCCT 62.457 66.667 0.00 0.00 0.00 3.85
536 541 3.740128 ATCCTGTGCATCGCCGTCC 62.740 63.158 0.00 0.00 0.00 4.79
537 542 2.202932 ATCCTGTGCATCGCCGTC 60.203 61.111 0.00 0.00 0.00 4.79
538 543 2.202932 GATCCTGTGCATCGCCGT 60.203 61.111 0.00 0.00 0.00 5.68
539 544 2.969238 GGATCCTGTGCATCGCCG 60.969 66.667 3.84 0.00 0.00 6.46
540 545 2.969238 CGGATCCTGTGCATCGCC 60.969 66.667 10.75 0.00 0.00 5.54
541 546 2.202932 ACGGATCCTGTGCATCGC 60.203 61.111 10.75 0.00 0.00 4.58
542 547 0.873312 CTGACGGATCCTGTGCATCG 60.873 60.000 10.75 0.00 0.00 3.84
543 548 0.531532 CCTGACGGATCCTGTGCATC 60.532 60.000 10.75 0.00 0.00 3.91
544 549 1.267574 ACCTGACGGATCCTGTGCAT 61.268 55.000 10.75 0.00 0.00 3.96
545 550 1.913262 ACCTGACGGATCCTGTGCA 60.913 57.895 10.75 8.80 0.00 4.57
546 551 1.448540 CACCTGACGGATCCTGTGC 60.449 63.158 10.75 5.06 0.00 4.57
547 552 1.448540 GCACCTGACGGATCCTGTG 60.449 63.158 10.75 9.98 0.00 3.66
548 553 1.267574 ATGCACCTGACGGATCCTGT 61.268 55.000 10.75 9.57 0.00 4.00
549 554 0.107508 AATGCACCTGACGGATCCTG 60.108 55.000 10.75 6.11 0.00 3.86
550 555 0.620556 AAATGCACCTGACGGATCCT 59.379 50.000 10.75 0.00 0.00 3.24
551 556 1.401905 GAAAATGCACCTGACGGATCC 59.598 52.381 0.00 0.00 0.00 3.36
552 557 1.401905 GGAAAATGCACCTGACGGATC 59.598 52.381 0.00 0.00 0.00 3.36
553 558 1.004745 AGGAAAATGCACCTGACGGAT 59.995 47.619 0.00 0.00 34.99 4.18
554 559 0.400213 AGGAAAATGCACCTGACGGA 59.600 50.000 0.00 0.00 34.99 4.69
555 560 1.247567 AAGGAAAATGCACCTGACGG 58.752 50.000 0.00 0.00 36.56 4.79
556 561 2.811431 TGTAAGGAAAATGCACCTGACG 59.189 45.455 4.53 0.00 39.77 4.35
557 562 4.846779 TTGTAAGGAAAATGCACCTGAC 57.153 40.909 2.18 2.18 37.96 3.51
558 563 5.860941 TTTTGTAAGGAAAATGCACCTGA 57.139 34.783 0.00 0.00 36.56 3.86
559 564 7.495135 AATTTTTGTAAGGAAAATGCACCTG 57.505 32.000 0.00 0.00 36.94 4.00
560 565 9.218440 CATAATTTTTGTAAGGAAAATGCACCT 57.782 29.630 0.00 0.00 36.94 4.00
561 566 7.962373 GCATAATTTTTGTAAGGAAAATGCACC 59.038 33.333 0.00 0.00 36.94 5.01
562 567 7.687757 CGCATAATTTTTGTAAGGAAAATGCAC 59.312 33.333 0.00 0.00 36.94 4.57
563 568 7.148507 CCGCATAATTTTTGTAAGGAAAATGCA 60.149 33.333 0.00 0.00 36.94 3.96
564 569 7.064016 TCCGCATAATTTTTGTAAGGAAAATGC 59.936 33.333 0.00 0.00 36.94 3.56
565 570 8.472683 TCCGCATAATTTTTGTAAGGAAAATG 57.527 30.769 0.00 0.00 36.94 2.32
566 571 9.495572 TTTCCGCATAATTTTTGTAAGGAAAAT 57.504 25.926 15.84 0.00 40.78 1.82
567 572 8.766151 GTTTCCGCATAATTTTTGTAAGGAAAA 58.234 29.630 17.83 0.00 43.84 2.29
568 573 7.926555 TGTTTCCGCATAATTTTTGTAAGGAAA 59.073 29.630 15.01 15.01 41.25 3.13
569 574 7.434492 TGTTTCCGCATAATTTTTGTAAGGAA 58.566 30.769 8.34 8.34 33.95 3.36
570 575 6.982852 TGTTTCCGCATAATTTTTGTAAGGA 58.017 32.000 0.00 0.00 0.00 3.36
571 576 7.644986 TTGTTTCCGCATAATTTTTGTAAGG 57.355 32.000 0.00 0.00 0.00 2.69
572 577 7.687757 GCATTGTTTCCGCATAATTTTTGTAAG 59.312 33.333 0.00 0.00 0.00 2.34
573 578 7.171508 TGCATTGTTTCCGCATAATTTTTGTAA 59.828 29.630 0.00 0.00 0.00 2.41
574 579 6.646653 TGCATTGTTTCCGCATAATTTTTGTA 59.353 30.769 0.00 0.00 0.00 2.41
575 580 5.468072 TGCATTGTTTCCGCATAATTTTTGT 59.532 32.000 0.00 0.00 0.00 2.83
576 581 5.789512 GTGCATTGTTTCCGCATAATTTTTG 59.210 36.000 0.00 0.00 38.07 2.44
577 582 5.468072 TGTGCATTGTTTCCGCATAATTTTT 59.532 32.000 0.00 0.00 38.07 1.94
578 583 4.993584 TGTGCATTGTTTCCGCATAATTTT 59.006 33.333 0.00 0.00 38.07 1.82
579 584 4.564041 TGTGCATTGTTTCCGCATAATTT 58.436 34.783 0.00 0.00 38.07 1.82
580 585 4.185467 TGTGCATTGTTTCCGCATAATT 57.815 36.364 0.00 0.00 38.07 1.40
581 586 3.865011 TGTGCATTGTTTCCGCATAAT 57.135 38.095 0.00 0.00 38.07 1.28
582 587 3.650070 TTGTGCATTGTTTCCGCATAA 57.350 38.095 0.00 0.00 38.07 1.90
583 588 3.005261 ACTTTGTGCATTGTTTCCGCATA 59.995 39.130 0.00 0.00 38.07 3.14
584 589 2.224018 ACTTTGTGCATTGTTTCCGCAT 60.224 40.909 0.00 0.00 38.07 4.73
585 590 1.135915 ACTTTGTGCATTGTTTCCGCA 59.864 42.857 0.00 0.00 0.00 5.69
586 591 1.522258 CACTTTGTGCATTGTTTCCGC 59.478 47.619 0.00 0.00 0.00 5.54
587 592 2.535166 CACACTTTGTGCATTGTTTCCG 59.465 45.455 0.00 0.00 41.89 4.30
599 604 9.998106 AAACACTCTATTATAGTCACACTTTGT 57.002 29.630 0.00 0.00 0.00 2.83
602 607 9.640963 GTCAAACACTCTATTATAGTCACACTT 57.359 33.333 0.00 0.00 0.00 3.16
603 608 8.803235 TGTCAAACACTCTATTATAGTCACACT 58.197 33.333 0.00 0.00 0.00 3.55
604 609 8.981724 TGTCAAACACTCTATTATAGTCACAC 57.018 34.615 0.00 0.00 0.00 3.82
605 610 9.990360 TTTGTCAAACACTCTATTATAGTCACA 57.010 29.630 0.00 0.00 0.00 3.58
679 684 8.678593 TTTTTGGTAGTTTTCAACCACTTTTT 57.321 26.923 0.00 0.00 45.31 1.94
707 713 9.567776 TTGGTAGTTTTTAGTCATGAGATTTGA 57.432 29.630 0.00 0.00 0.00 2.69
708 714 9.831737 CTTGGTAGTTTTTAGTCATGAGATTTG 57.168 33.333 0.00 0.00 0.00 2.32
709 715 9.574516 ACTTGGTAGTTTTTAGTCATGAGATTT 57.425 29.630 0.00 0.00 0.00 2.17
714 720 7.990886 AGTCAACTTGGTAGTTTTTAGTCATGA 59.009 33.333 0.00 0.00 41.85 3.07
716 722 8.747538 AAGTCAACTTGGTAGTTTTTAGTCAT 57.252 30.769 0.00 0.00 41.85 3.06
754 760 7.119846 GCTGTCAGAAATGGAGTTAAACATAGT 59.880 37.037 3.32 0.00 0.00 2.12
755 761 7.119699 TGCTGTCAGAAATGGAGTTAAACATAG 59.880 37.037 3.32 0.00 0.00 2.23
756 762 6.939730 TGCTGTCAGAAATGGAGTTAAACATA 59.060 34.615 3.32 0.00 0.00 2.29
757 763 5.769662 TGCTGTCAGAAATGGAGTTAAACAT 59.230 36.000 3.32 0.00 0.00 2.71
758 764 5.129634 TGCTGTCAGAAATGGAGTTAAACA 58.870 37.500 3.32 0.00 0.00 2.83
759 765 5.470098 TCTGCTGTCAGAAATGGAGTTAAAC 59.530 40.000 3.32 0.00 45.69 2.01
778 784 3.325753 GACAGGTGGGCCTCTGCT 61.326 66.667 21.50 12.26 44.97 4.24
779 785 3.618780 CTGACAGGTGGGCCTCTGC 62.619 68.421 21.50 16.05 44.97 4.26
780 786 2.667418 CTGACAGGTGGGCCTCTG 59.333 66.667 20.46 20.46 44.97 3.35
791 797 2.047844 CTGCCGTCCACCTGACAG 60.048 66.667 0.00 0.00 44.71 3.51
810 816 3.921722 GCGCCGTTAGCCGTTAGC 61.922 66.667 0.00 0.00 44.25 3.09
866 876 1.946984 AGGTTATTCCTGGTCCGACA 58.053 50.000 0.00 0.00 46.19 4.35
963 978 4.248859 CGGAGTGTGAGATGAAGAAACAT 58.751 43.478 0.00 0.00 0.00 2.71
973 988 1.977009 TGTCGCCGGAGTGTGAGAT 60.977 57.895 5.05 0.00 0.00 2.75
1012 1027 0.249911 GAGGTCTCGTTGCTGTTGGT 60.250 55.000 0.00 0.00 0.00 3.67
1014 1029 0.249868 TGGAGGTCTCGTTGCTGTTG 60.250 55.000 0.00 0.00 0.00 3.33
1032 1047 4.351192 TCATGTACTCATCATCGTCGTTG 58.649 43.478 0.00 0.00 31.15 4.10
1100 1115 2.780010 AGAGGAGAGGGAGAGAAGAGAG 59.220 54.545 0.00 0.00 0.00 3.20
1104 1119 3.290710 CAGAAGAGGAGAGGGAGAGAAG 58.709 54.545 0.00 0.00 0.00 2.85
1120 1135 4.993029 CTAACCCTAGGACAGACAGAAG 57.007 50.000 11.48 0.00 0.00 2.85
1131 1146 2.883326 ACCCTTACCCTAACCCTAGG 57.117 55.000 0.06 0.06 44.10 3.02
1145 1160 7.679881 AGAAATCCCAAATATCTTCAAACCCTT 59.320 33.333 0.00 0.00 0.00 3.95
1208 1225 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
1212 1229 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1213 1230 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1214 1231 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1215 1232 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1216 1233 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1217 1234 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1218 1235 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1219 1236 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1220 1237 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1221 1238 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1222 1239 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1223 1240 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1224 1241 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1225 1242 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1226 1243 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1227 1244 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1228 1245 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1229 1246 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1230 1247 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1231 1248 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1232 1249 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1233 1250 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1234 1251 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1235 1252 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1236 1253 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1237 1254 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1238 1255 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
1239 1256 2.315011 CAAACACACACACACACACAC 58.685 47.619 0.00 0.00 0.00 3.82
1240 1257 1.335415 GCAAACACACACACACACACA 60.335 47.619 0.00 0.00 0.00 3.72
1241 1258 1.068610 AGCAAACACACACACACACAC 60.069 47.619 0.00 0.00 0.00 3.82
1242 1259 1.068679 CAGCAAACACACACACACACA 60.069 47.619 0.00 0.00 0.00 3.72
1243 1260 1.068610 ACAGCAAACACACACACACAC 60.069 47.619 0.00 0.00 0.00 3.82
1244 1261 1.242989 ACAGCAAACACACACACACA 58.757 45.000 0.00 0.00 0.00 3.72
1245 1262 1.984990 CAACAGCAAACACACACACAC 59.015 47.619 0.00 0.00 0.00 3.82
1246 1263 1.668337 GCAACAGCAAACACACACACA 60.668 47.619 0.00 0.00 0.00 3.72
1247 1264 0.991344 GCAACAGCAAACACACACAC 59.009 50.000 0.00 0.00 0.00 3.82
1248 1265 0.600057 TGCAACAGCAAACACACACA 59.400 45.000 0.00 0.00 34.85 3.72
1249 1266 1.270971 CTGCAACAGCAAACACACAC 58.729 50.000 0.00 0.00 37.91 3.82
1250 1267 3.717775 CTGCAACAGCAAACACACA 57.282 47.368 0.00 0.00 37.91 3.72
1291 1308 2.091555 ACAAGCCCACAAAAACTAGGGA 60.092 45.455 0.00 0.00 44.30 4.20
1393 1410 4.277174 CAGTAGCACATCCTACGAATCTCT 59.723 45.833 0.00 0.00 41.93 3.10
1401 1418 5.509840 CCATTACCTCAGTAGCACATCCTAC 60.510 48.000 0.00 0.00 38.34 3.18
1476 1528 8.165239 ACATAGCAATGTTTTTACACTTCAGA 57.835 30.769 0.00 0.00 44.07 3.27
1479 1531 7.326063 GTGGACATAGCAATGTTTTTACACTTC 59.674 37.037 0.00 0.00 46.49 3.01
1494 1546 3.033909 ACATAGCAGAGTGGACATAGCA 58.966 45.455 0.00 0.00 0.00 3.49
1495 1547 3.320541 AGACATAGCAGAGTGGACATAGC 59.679 47.826 0.00 0.00 0.00 2.97
1496 1548 4.582240 TCAGACATAGCAGAGTGGACATAG 59.418 45.833 0.00 0.00 0.00 2.23
1497 1549 4.536765 TCAGACATAGCAGAGTGGACATA 58.463 43.478 0.00 0.00 0.00 2.29
1498 1550 3.369175 TCAGACATAGCAGAGTGGACAT 58.631 45.455 0.00 0.00 0.00 3.06
1499 1551 2.807676 TCAGACATAGCAGAGTGGACA 58.192 47.619 0.00 0.00 0.00 4.02
1500 1552 3.876274 TTCAGACATAGCAGAGTGGAC 57.124 47.619 0.00 0.00 0.00 4.02
1501 1553 6.098838 ACATTATTCAGACATAGCAGAGTGGA 59.901 38.462 0.00 0.00 0.00 4.02
1502 1554 6.286758 ACATTATTCAGACATAGCAGAGTGG 58.713 40.000 0.00 0.00 0.00 4.00
1503 1555 8.140628 AGTACATTATTCAGACATAGCAGAGTG 58.859 37.037 0.00 0.00 0.00 3.51
1504 1556 8.243961 AGTACATTATTCAGACATAGCAGAGT 57.756 34.615 0.00 0.00 0.00 3.24
1505 1557 8.976471 CAAGTACATTATTCAGACATAGCAGAG 58.024 37.037 0.00 0.00 0.00 3.35
1506 1558 8.478066 ACAAGTACATTATTCAGACATAGCAGA 58.522 33.333 0.00 0.00 0.00 4.26
1507 1559 8.654230 ACAAGTACATTATTCAGACATAGCAG 57.346 34.615 0.00 0.00 0.00 4.24
1666 1787 6.209391 AGTTCACACCATCCTGGAAAATTAAG 59.791 38.462 0.00 0.00 40.96 1.85
1667 1788 6.015519 CAGTTCACACCATCCTGGAAAATTAA 60.016 38.462 0.00 0.00 40.96 1.40
1671 1792 3.221771 CAGTTCACACCATCCTGGAAAA 58.778 45.455 0.00 0.00 40.96 2.29
1749 1871 7.227049 TCATGATACATATCACGGAGCTTTA 57.773 36.000 3.71 0.00 44.66 1.85
1750 1872 6.101650 TCATGATACATATCACGGAGCTTT 57.898 37.500 3.71 0.00 44.66 3.51
1757 1879 5.347093 GGTTCTGCTCATGATACATATCACG 59.653 44.000 3.71 0.00 44.66 4.35
1759 1881 6.676990 AGGTTCTGCTCATGATACATATCA 57.323 37.500 4.11 4.11 45.78 2.15
1838 1960 5.128499 AGTGATCACCGAGAGAATCAATCTT 59.872 40.000 22.21 0.00 38.96 2.40
1841 1963 5.360999 TGTAGTGATCACCGAGAGAATCAAT 59.639 40.000 22.21 1.52 37.82 2.57
1855 1977 2.428530 CACTAGCTGGCTGTAGTGATCA 59.571 50.000 16.19 0.00 46.17 2.92
1856 1978 2.223923 CCACTAGCTGGCTGTAGTGATC 60.224 54.545 20.55 0.00 46.17 2.92
1861 1983 2.034878 TCATCCACTAGCTGGCTGTAG 58.965 52.381 5.25 0.00 40.39 2.74
1942 2064 7.000472 TCTCCTTCAGTTCATTGATTGACTTT 59.000 34.615 1.99 0.00 32.84 2.66
1943 2065 6.537355 TCTCCTTCAGTTCATTGATTGACTT 58.463 36.000 1.99 0.00 32.84 3.01
1976 2098 1.959282 CTTTGCCTGCTCCTCAAGTTT 59.041 47.619 0.00 0.00 0.00 2.66
2281 3877 2.836372 TGCATCAGACTGATCACTCCTT 59.164 45.455 15.24 0.00 34.28 3.36
2347 3954 6.669154 ACCAAAATGATCTGAACCCATTACAT 59.331 34.615 0.00 0.00 31.07 2.29
2411 4031 7.064847 CCAGCTCTCAGCATCAGATAATATTTC 59.935 40.741 0.00 0.00 45.56 2.17
2433 4054 6.427242 AGTTCTTAACTTAACTTAGCACCAGC 59.573 38.462 0.00 0.00 39.04 4.85
2472 4095 4.158384 CACACAGAAATAAACGGCATCAC 58.842 43.478 0.00 0.00 0.00 3.06
2535 4158 0.520404 GCAGCCTGTGATGAAGTGTG 59.480 55.000 0.00 0.00 0.00 3.82
2537 4160 1.199327 CTTGCAGCCTGTGATGAAGTG 59.801 52.381 0.00 0.00 0.00 3.16
2538 4161 1.531423 CTTGCAGCCTGTGATGAAGT 58.469 50.000 0.00 0.00 0.00 3.01
2546 4169 0.771127 TTACCTTCCTTGCAGCCTGT 59.229 50.000 0.00 0.00 0.00 4.00
2550 4173 3.942130 ATTGTTTACCTTCCTTGCAGC 57.058 42.857 0.00 0.00 0.00 5.25
2553 4176 8.736244 TGTTTAGATATTGTTTACCTTCCTTGC 58.264 33.333 0.00 0.00 0.00 4.01
2660 4338 5.343249 AGTGTCTTTGAACAATTTCAGTGC 58.657 37.500 0.00 0.00 42.79 4.40
2686 4398 5.066634 TCAGTGAGATTCCGTTCTATCAGTC 59.933 44.000 0.00 0.00 0.00 3.51
2788 4601 1.605457 GGTGCGTCAGTCAGATCACAA 60.605 52.381 0.00 0.00 35.56 3.33
2791 4604 0.528017 GAGGTGCGTCAGTCAGATCA 59.472 55.000 0.00 0.00 0.00 2.92
2794 4607 0.315251 CAAGAGGTGCGTCAGTCAGA 59.685 55.000 0.00 0.00 0.00 3.27
2870 4683 2.317040 GACGTCCTCCTCCCATTATCA 58.683 52.381 3.51 0.00 0.00 2.15
2874 4687 2.058595 CCGACGTCCTCCTCCCATT 61.059 63.158 10.58 0.00 0.00 3.16
2900 4713 2.274542 TCATCACCCCACCAGTATTGT 58.725 47.619 0.00 0.00 0.00 2.71
2903 4716 2.707791 CAGATCATCACCCCACCAGTAT 59.292 50.000 0.00 0.00 0.00 2.12
2905 4718 0.914644 CAGATCATCACCCCACCAGT 59.085 55.000 0.00 0.00 0.00 4.00
2915 4728 0.749049 CGAGGACCTGCAGATCATCA 59.251 55.000 22.02 0.00 0.00 3.07
2951 4764 1.986378 GCACAAGTACGACTACAGCTG 59.014 52.381 13.48 13.48 0.00 4.24
2954 4767 2.228103 TCCAGCACAAGTACGACTACAG 59.772 50.000 0.00 0.00 0.00 2.74
2957 4770 2.747989 CTCTCCAGCACAAGTACGACTA 59.252 50.000 0.00 0.00 0.00 2.59
2961 4774 2.949451 ATCTCTCCAGCACAAGTACG 57.051 50.000 0.00 0.00 0.00 3.67
3087 4901 0.182061 AGCATGGACCAGCACTATGG 59.818 55.000 15.46 0.00 46.47 2.74
3093 4907 2.045634 GCAGAGCATGGACCAGCA 60.046 61.111 15.46 0.00 0.00 4.41
3106 4920 1.270826 CAACGACTCAGGAGAAGCAGA 59.729 52.381 2.79 0.00 0.00 4.26
3118 4932 1.000955 TGAGGAAGAAGGCAACGACTC 59.999 52.381 0.00 0.00 46.39 3.36
3125 4939 1.734655 AAGAGGTGAGGAAGAAGGCA 58.265 50.000 0.00 0.00 0.00 4.75
3151 4965 1.823295 GCAGAAGGGCTCGTGGATA 59.177 57.895 0.00 0.00 0.00 2.59
3166 4980 0.859882 CATGAGATACAGCAGCGCAG 59.140 55.000 11.47 1.31 0.00 5.18
3186 5000 5.661056 TTCCTCGACTACATGAAGATTGT 57.339 39.130 0.00 0.00 0.00 2.71
3209 5023 1.978712 CTCGCAGCGACGAAGACCTA 61.979 60.000 15.11 0.00 42.39 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.