Multiple sequence alignment - TraesCS6B01G142700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G142700 chr6B 100.000 4890 0 0 1 4890 142498256 142503145 0.000000e+00 9031
1 TraesCS6B01G142700 chr6D 92.292 3373 185 37 1570 4890 67514959 67518308 0.000000e+00 4719
2 TraesCS6B01G142700 chr6D 88.875 791 32 17 768 1547 67514222 67514967 0.000000e+00 922
3 TraesCS6B01G142700 chr6D 94.054 185 11 0 370 554 67513782 67513966 1.040000e-71 281
4 TraesCS6B01G142700 chr6D 89.172 157 13 4 617 773 67513970 67514122 5.000000e-45 193
5 TraesCS6B01G142700 chr6D 85.870 92 13 0 1197 1288 79598498 79598589 1.120000e-16 99
6 TraesCS6B01G142700 chr6A 92.452 2610 125 23 1521 4090 85018345 85020922 0.000000e+00 3663
7 TraesCS6B01G142700 chr6A 89.364 818 47 17 4075 4874 85022359 85023154 0.000000e+00 992
8 TraesCS6B01G142700 chr6A 86.856 738 32 28 768 1478 85017646 85018345 0.000000e+00 765
9 TraesCS6B01G142700 chr6A 92.500 160 11 1 615 773 85017386 85017545 1.370000e-55 228
10 TraesCS6B01G142700 chr6A 96.591 88 3 0 467 554 85017297 85017384 3.940000e-31 147
11 TraesCS6B01G142700 chr7D 96.552 377 13 0 1 377 518043900 518044276 4.160000e-175 625
12 TraesCS6B01G142700 chr7D 93.548 372 24 0 1 372 12170971 12171342 5.530000e-154 555
13 TraesCS6B01G142700 chr7D 93.548 372 24 0 1 372 49162051 49161680 5.530000e-154 555
14 TraesCS6B01G142700 chr3D 95.251 379 17 1 1 378 373511003 373510625 2.520000e-167 599
15 TraesCS6B01G142700 chr3D 92.388 381 28 1 2 381 92226473 92226853 4.310000e-150 542
16 TraesCS6B01G142700 chr4B 95.135 370 17 1 1 369 46922306 46922675 2.540000e-162 582
17 TraesCS6B01G142700 chr1D 93.850 374 23 0 1 374 478917715 478918088 9.190000e-157 564
18 TraesCS6B01G142700 chr7B 93.514 370 23 1 1 369 607582625 607582994 2.570000e-152 549
19 TraesCS6B01G142700 chr5A 91.200 375 33 0 1 375 654160275 654159901 1.210000e-140 510


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G142700 chr6B 142498256 142503145 4889 False 9031.00 9031 100.00000 1 4890 1 chr6B.!!$F1 4889
1 TraesCS6B01G142700 chr6D 67513782 67518308 4526 False 1528.75 4719 91.09825 370 4890 4 chr6D.!!$F2 4520
2 TraesCS6B01G142700 chr6A 85017297 85023154 5857 False 1159.00 3663 91.55260 467 4874 5 chr6A.!!$F1 4407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.032130 CGGACCGGATAGTGATGGTG 59.968 60.0 9.46 0.0 34.12 4.17 F
283 284 0.036732 CACCATGTACACACCTGCCT 59.963 55.0 0.00 0.0 0.00 4.75 F
302 303 0.303191 TGCGTTCGTGTCATGTGTTG 59.697 50.0 0.00 0.0 0.00 3.33 F
303 304 0.303493 GCGTTCGTGTCATGTGTTGT 59.697 50.0 0.00 0.0 0.00 3.32 F
1309 1440 0.376502 GCTCTTTGCTCTTGGATCGC 59.623 55.0 0.00 0.0 38.95 4.58 F
2061 2216 0.458025 GAACCCGTCTAGTTCCGCAG 60.458 60.0 0.00 0.0 38.12 5.18 F
3511 3689 0.533032 AGGAGCGAGTCTACAAAGGC 59.467 55.0 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1304 1435 0.035458 CCCCTTGGTATGGAGCGATC 59.965 60.000 0.00 0.0 0.00 3.69 R
2046 2201 0.038526 AACACTGCGGAACTAGACGG 60.039 55.000 0.00 0.0 0.00 4.79 R
2142 2297 5.338365 CAAAGCTATGAATGAGGACTTTGC 58.662 41.667 0.00 0.0 36.99 3.68 R
2213 2370 7.855904 GTGCACCTGTAAAACATATTATAGCAC 59.144 37.037 5.22 0.0 0.00 4.40 R
2648 2805 0.923358 TCCACCAACTCACCAAAGGT 59.077 50.000 0.00 0.0 35.62 3.50 R
3784 3969 0.318441 CTGTTCTCACCGGCTCTTCA 59.682 55.000 0.00 0.0 0.00 3.02 R
4649 6306 0.179000 GATCAGGTGGCCGTCAAGAT 59.821 55.000 0.00 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.035312 CTGCCAAGGCCTTCAGCT 59.965 61.111 28.59 3.36 43.05 4.24
18 19 2.282674 TGCCAAGGCCTTCAGCTG 60.283 61.111 28.59 14.92 43.05 4.24
19 20 3.756727 GCCAAGGCCTTCAGCTGC 61.757 66.667 23.93 14.72 43.05 5.25
20 21 2.282674 CCAAGGCCTTCAGCTGCA 60.283 61.111 17.29 0.00 43.05 4.41
21 22 2.633509 CCAAGGCCTTCAGCTGCAC 61.634 63.158 17.29 0.00 43.05 4.57
22 23 2.282745 AAGGCCTTCAGCTGCACC 60.283 61.111 13.78 7.43 43.05 5.01
23 24 3.875510 AAGGCCTTCAGCTGCACCC 62.876 63.158 13.78 6.63 43.05 4.61
25 26 4.357279 GCCTTCAGCTGCACCCCT 62.357 66.667 9.47 0.00 38.99 4.79
26 27 2.045536 CCTTCAGCTGCACCCCTC 60.046 66.667 9.47 0.00 0.00 4.30
27 28 2.600729 CCTTCAGCTGCACCCCTCT 61.601 63.158 9.47 0.00 0.00 3.69
28 29 1.377994 CTTCAGCTGCACCCCTCTT 59.622 57.895 9.47 0.00 0.00 2.85
29 30 0.251077 CTTCAGCTGCACCCCTCTTT 60.251 55.000 9.47 0.00 0.00 2.52
30 31 0.538057 TTCAGCTGCACCCCTCTTTG 60.538 55.000 9.47 0.00 0.00 2.77
31 32 1.073722 CAGCTGCACCCCTCTTTGA 59.926 57.895 0.00 0.00 0.00 2.69
32 33 0.959372 CAGCTGCACCCCTCTTTGAG 60.959 60.000 0.00 0.00 0.00 3.02
33 34 2.338785 GCTGCACCCCTCTTTGAGC 61.339 63.158 0.00 0.00 0.00 4.26
34 35 1.377994 CTGCACCCCTCTTTGAGCT 59.622 57.895 0.00 0.00 0.00 4.09
35 36 0.676151 CTGCACCCCTCTTTGAGCTC 60.676 60.000 6.82 6.82 0.00 4.09
36 37 1.376466 GCACCCCTCTTTGAGCTCA 59.624 57.895 13.74 13.74 0.00 4.26
37 38 0.676151 GCACCCCTCTTTGAGCTCAG 60.676 60.000 17.43 6.57 0.00 3.35
38 39 0.035630 CACCCCTCTTTGAGCTCAGG 60.036 60.000 17.43 15.59 0.00 3.86
39 40 1.204113 ACCCCTCTTTGAGCTCAGGG 61.204 60.000 28.07 28.07 34.85 4.45
40 41 1.606531 CCCTCTTTGAGCTCAGGGG 59.393 63.158 24.76 23.55 33.17 4.79
41 42 0.911525 CCCTCTTTGAGCTCAGGGGA 60.912 60.000 27.51 20.37 34.71 4.81
42 43 0.987294 CCTCTTTGAGCTCAGGGGAA 59.013 55.000 17.43 7.45 0.00 3.97
43 44 1.352352 CCTCTTTGAGCTCAGGGGAAA 59.648 52.381 17.43 7.06 0.00 3.13
44 45 2.431454 CTCTTTGAGCTCAGGGGAAAC 58.569 52.381 17.43 0.00 0.00 2.78
61 62 3.763757 CCCTAGGTCCGGGTCCCT 61.764 72.222 8.29 7.59 36.91 4.20
62 63 2.123382 CCTAGGTCCGGGTCCCTC 60.123 72.222 6.29 0.00 32.08 4.30
63 64 2.518825 CTAGGTCCGGGTCCCTCG 60.519 72.222 6.29 2.82 32.08 4.63
73 74 3.760917 GTCCCTCGGACCGGATAG 58.239 66.667 15.25 3.88 46.19 2.08
74 75 1.152798 GTCCCTCGGACCGGATAGT 60.153 63.158 15.25 0.00 46.19 2.12
75 76 1.152819 TCCCTCGGACCGGATAGTG 60.153 63.158 15.25 0.00 0.00 2.74
76 77 1.152819 CCCTCGGACCGGATAGTGA 60.153 63.158 15.25 0.00 0.00 3.41
77 78 0.539901 CCCTCGGACCGGATAGTGAT 60.540 60.000 15.25 0.00 0.00 3.06
78 79 0.598562 CCTCGGACCGGATAGTGATG 59.401 60.000 15.25 0.00 0.00 3.07
79 80 0.598562 CTCGGACCGGATAGTGATGG 59.401 60.000 15.25 0.00 0.00 3.51
80 81 0.106369 TCGGACCGGATAGTGATGGT 60.106 55.000 15.25 0.00 37.44 3.55
81 82 0.032130 CGGACCGGATAGTGATGGTG 59.968 60.000 9.46 0.00 34.12 4.17
82 83 1.120530 GGACCGGATAGTGATGGTGT 58.879 55.000 9.46 0.00 34.12 4.16
83 84 1.068741 GGACCGGATAGTGATGGTGTC 59.931 57.143 9.46 0.00 34.12 3.67
84 85 2.032620 GACCGGATAGTGATGGTGTCT 58.967 52.381 9.46 0.00 34.12 3.41
85 86 2.032620 ACCGGATAGTGATGGTGTCTC 58.967 52.381 9.46 0.00 32.33 3.36
86 87 1.001268 CCGGATAGTGATGGTGTCTCG 60.001 57.143 0.00 0.00 0.00 4.04
87 88 1.001268 CGGATAGTGATGGTGTCTCGG 60.001 57.143 0.00 0.00 0.00 4.63
88 89 2.032620 GGATAGTGATGGTGTCTCGGT 58.967 52.381 0.00 0.00 0.00 4.69
89 90 2.223829 GGATAGTGATGGTGTCTCGGTG 60.224 54.545 0.00 0.00 0.00 4.94
90 91 1.919240 TAGTGATGGTGTCTCGGTGT 58.081 50.000 0.00 0.00 0.00 4.16
91 92 0.603569 AGTGATGGTGTCTCGGTGTC 59.396 55.000 0.00 0.00 0.00 3.67
92 93 0.732880 GTGATGGTGTCTCGGTGTCG 60.733 60.000 0.00 0.00 37.82 4.35
93 94 1.176619 TGATGGTGTCTCGGTGTCGT 61.177 55.000 0.00 0.00 37.69 4.34
94 95 0.806868 GATGGTGTCTCGGTGTCGTA 59.193 55.000 0.00 0.00 37.69 3.43
95 96 1.404391 GATGGTGTCTCGGTGTCGTAT 59.596 52.381 0.00 0.00 37.69 3.06
96 97 1.250328 TGGTGTCTCGGTGTCGTATT 58.750 50.000 0.00 0.00 37.69 1.89
97 98 1.200716 TGGTGTCTCGGTGTCGTATTC 59.799 52.381 0.00 0.00 37.69 1.75
98 99 1.468736 GGTGTCTCGGTGTCGTATTCC 60.469 57.143 0.00 0.00 37.69 3.01
99 100 1.471684 GTGTCTCGGTGTCGTATTCCT 59.528 52.381 0.00 0.00 37.69 3.36
100 101 2.094854 GTGTCTCGGTGTCGTATTCCTT 60.095 50.000 0.00 0.00 37.69 3.36
101 102 2.163010 TGTCTCGGTGTCGTATTCCTTC 59.837 50.000 0.00 0.00 37.69 3.46
102 103 2.422832 GTCTCGGTGTCGTATTCCTTCT 59.577 50.000 0.00 0.00 37.69 2.85
103 104 3.087031 TCTCGGTGTCGTATTCCTTCTT 58.913 45.455 0.00 0.00 37.69 2.52
104 105 3.119602 TCTCGGTGTCGTATTCCTTCTTG 60.120 47.826 0.00 0.00 37.69 3.02
105 106 2.821378 TCGGTGTCGTATTCCTTCTTGA 59.179 45.455 0.00 0.00 37.69 3.02
106 107 3.256383 TCGGTGTCGTATTCCTTCTTGAA 59.744 43.478 0.00 0.00 37.69 2.69
107 108 3.612860 CGGTGTCGTATTCCTTCTTGAAG 59.387 47.826 3.55 3.55 0.00 3.02
108 109 3.933332 GGTGTCGTATTCCTTCTTGAAGG 59.067 47.826 20.21 20.21 41.35 3.46
109 110 3.371285 GTGTCGTATTCCTTCTTGAAGGC 59.629 47.826 21.16 8.97 39.80 4.35
110 111 3.007506 TGTCGTATTCCTTCTTGAAGGCA 59.992 43.478 21.16 13.33 39.80 4.75
111 112 3.371285 GTCGTATTCCTTCTTGAAGGCAC 59.629 47.826 21.16 16.80 39.80 5.01
113 114 4.464951 TCGTATTCCTTCTTGAAGGCACTA 59.535 41.667 21.16 11.17 38.49 2.74
114 115 5.128827 TCGTATTCCTTCTTGAAGGCACTAT 59.871 40.000 21.16 14.26 38.49 2.12
115 116 5.463724 CGTATTCCTTCTTGAAGGCACTATC 59.536 44.000 21.16 10.19 38.49 2.08
116 117 5.707066 ATTCCTTCTTGAAGGCACTATCT 57.293 39.130 21.16 0.00 38.49 1.98
117 118 5.505181 TTCCTTCTTGAAGGCACTATCTT 57.495 39.130 21.16 0.00 38.49 2.40
118 119 4.836825 TCCTTCTTGAAGGCACTATCTTG 58.163 43.478 21.16 0.00 38.49 3.02
119 120 4.532126 TCCTTCTTGAAGGCACTATCTTGA 59.468 41.667 21.16 1.23 38.49 3.02
120 121 5.190528 TCCTTCTTGAAGGCACTATCTTGAT 59.809 40.000 21.16 0.00 38.49 2.57
121 122 5.526846 CCTTCTTGAAGGCACTATCTTGATC 59.473 44.000 15.43 0.00 38.49 2.92
122 123 4.686972 TCTTGAAGGCACTATCTTGATCG 58.313 43.478 0.00 0.00 38.49 3.69
123 124 4.160439 TCTTGAAGGCACTATCTTGATCGT 59.840 41.667 0.00 0.00 38.49 3.73
124 125 4.471904 TGAAGGCACTATCTTGATCGTT 57.528 40.909 0.00 0.00 38.49 3.85
125 126 4.433615 TGAAGGCACTATCTTGATCGTTC 58.566 43.478 0.00 0.00 38.49 3.95
126 127 3.085443 AGGCACTATCTTGATCGTTCG 57.915 47.619 0.00 0.00 36.02 3.95
127 128 1.523095 GGCACTATCTTGATCGTTCGC 59.477 52.381 0.00 0.00 0.00 4.70
128 129 1.188138 GCACTATCTTGATCGTTCGCG 59.812 52.381 0.00 0.00 42.98 5.87
129 130 1.781429 CACTATCTTGATCGTTCGCGG 59.219 52.381 6.13 0.00 41.70 6.46
130 131 1.404391 ACTATCTTGATCGTTCGCGGT 59.596 47.619 6.13 0.00 41.70 5.68
131 132 1.781429 CTATCTTGATCGTTCGCGGTG 59.219 52.381 6.13 0.00 41.70 4.94
132 133 0.108804 ATCTTGATCGTTCGCGGTGT 60.109 50.000 6.13 0.00 41.70 4.16
133 134 0.731514 TCTTGATCGTTCGCGGTGTC 60.732 55.000 6.13 0.00 41.70 3.67
134 135 1.683790 CTTGATCGTTCGCGGTGTCC 61.684 60.000 6.13 0.00 41.70 4.02
135 136 2.884207 GATCGTTCGCGGTGTCCC 60.884 66.667 6.13 0.00 41.70 4.46
136 137 4.446413 ATCGTTCGCGGTGTCCCC 62.446 66.667 6.13 0.00 41.70 4.81
145 146 2.124445 GGTGTCCCCGGTTATGGC 60.124 66.667 0.00 0.00 0.00 4.40
146 147 2.676265 GGTGTCCCCGGTTATGGCT 61.676 63.158 0.00 0.00 0.00 4.75
147 148 1.153229 GTGTCCCCGGTTATGGCTC 60.153 63.158 0.00 0.00 0.00 4.70
148 149 2.108362 GTCCCCGGTTATGGCTCG 59.892 66.667 0.00 0.00 0.00 5.03
149 150 3.158648 TCCCCGGTTATGGCTCGG 61.159 66.667 0.00 0.00 43.05 4.63
150 151 3.158648 CCCCGGTTATGGCTCGGA 61.159 66.667 0.00 0.00 45.96 4.55
151 152 2.516888 CCCCGGTTATGGCTCGGAT 61.517 63.158 0.00 0.00 45.96 4.18
152 153 1.301716 CCCGGTTATGGCTCGGATG 60.302 63.158 0.00 0.00 45.96 3.51
153 154 1.745890 CCGGTTATGGCTCGGATGA 59.254 57.895 0.00 0.00 45.96 2.92
154 155 0.321671 CCGGTTATGGCTCGGATGAT 59.678 55.000 0.00 0.00 45.96 2.45
155 156 1.432514 CGGTTATGGCTCGGATGATG 58.567 55.000 0.00 0.00 0.00 3.07
156 157 1.270305 CGGTTATGGCTCGGATGATGT 60.270 52.381 0.00 0.00 0.00 3.06
157 158 2.806745 CGGTTATGGCTCGGATGATGTT 60.807 50.000 0.00 0.00 0.00 2.71
158 159 2.549754 GGTTATGGCTCGGATGATGTTG 59.450 50.000 0.00 0.00 0.00 3.33
159 160 2.549064 TATGGCTCGGATGATGTTGG 57.451 50.000 0.00 0.00 0.00 3.77
160 161 0.839277 ATGGCTCGGATGATGTTGGA 59.161 50.000 0.00 0.00 0.00 3.53
161 162 0.178767 TGGCTCGGATGATGTTGGAG 59.821 55.000 0.00 0.00 0.00 3.86
162 163 0.179000 GGCTCGGATGATGTTGGAGT 59.821 55.000 0.00 0.00 0.00 3.85
163 164 1.407437 GGCTCGGATGATGTTGGAGTT 60.407 52.381 0.00 0.00 0.00 3.01
164 165 1.936547 GCTCGGATGATGTTGGAGTTC 59.063 52.381 0.00 0.00 0.00 3.01
165 166 2.419297 GCTCGGATGATGTTGGAGTTCT 60.419 50.000 0.00 0.00 0.00 3.01
166 167 3.452474 CTCGGATGATGTTGGAGTTCTC 58.548 50.000 0.00 0.00 0.00 2.87
167 168 2.159240 TCGGATGATGTTGGAGTTCTCG 60.159 50.000 0.00 0.00 0.00 4.04
168 169 2.417379 CGGATGATGTTGGAGTTCTCGT 60.417 50.000 0.00 0.00 0.00 4.18
169 170 3.600388 GGATGATGTTGGAGTTCTCGTT 58.400 45.455 0.00 0.00 0.00 3.85
170 171 3.372206 GGATGATGTTGGAGTTCTCGTTG 59.628 47.826 0.00 0.00 0.00 4.10
171 172 2.766313 TGATGTTGGAGTTCTCGTTGG 58.234 47.619 0.00 0.00 0.00 3.77
172 173 1.464997 GATGTTGGAGTTCTCGTTGGC 59.535 52.381 0.00 0.00 0.00 4.52
173 174 0.468226 TGTTGGAGTTCTCGTTGGCT 59.532 50.000 0.00 0.00 0.00 4.75
174 175 1.134220 TGTTGGAGTTCTCGTTGGCTT 60.134 47.619 0.00 0.00 0.00 4.35
175 176 1.264288 GTTGGAGTTCTCGTTGGCTTG 59.736 52.381 0.00 0.00 0.00 4.01
176 177 0.250295 TGGAGTTCTCGTTGGCTTGG 60.250 55.000 0.00 0.00 0.00 3.61
177 178 1.578206 GGAGTTCTCGTTGGCTTGGC 61.578 60.000 0.00 0.00 0.00 4.52
178 179 0.884704 GAGTTCTCGTTGGCTTGGCA 60.885 55.000 0.00 0.00 0.00 4.92
179 180 0.250901 AGTTCTCGTTGGCTTGGCAT 60.251 50.000 0.00 0.00 0.00 4.40
180 181 0.598065 GTTCTCGTTGGCTTGGCATT 59.402 50.000 0.00 0.00 0.00 3.56
181 182 0.597568 TTCTCGTTGGCTTGGCATTG 59.402 50.000 0.00 0.00 0.00 2.82
182 183 1.444895 CTCGTTGGCTTGGCATTGC 60.445 57.895 0.00 0.00 0.00 3.56
201 202 4.785453 GCCCTTGGCTCGGGTCTG 62.785 72.222 12.25 0.00 46.69 3.51
202 203 4.101448 CCCTTGGCTCGGGTCTGG 62.101 72.222 0.00 0.00 36.91 3.86
203 204 3.322466 CCTTGGCTCGGGTCTGGT 61.322 66.667 0.00 0.00 0.00 4.00
204 205 1.987855 CCTTGGCTCGGGTCTGGTA 60.988 63.158 0.00 0.00 0.00 3.25
205 206 1.517832 CTTGGCTCGGGTCTGGTAG 59.482 63.158 0.00 0.00 0.00 3.18
206 207 1.961180 CTTGGCTCGGGTCTGGTAGG 61.961 65.000 0.00 0.00 0.00 3.18
207 208 2.363925 GGCTCGGGTCTGGTAGGT 60.364 66.667 0.00 0.00 0.00 3.08
208 209 1.988406 GGCTCGGGTCTGGTAGGTT 60.988 63.158 0.00 0.00 0.00 3.50
209 210 1.551019 GGCTCGGGTCTGGTAGGTTT 61.551 60.000 0.00 0.00 0.00 3.27
210 211 1.188863 GCTCGGGTCTGGTAGGTTTA 58.811 55.000 0.00 0.00 0.00 2.01
211 212 1.551883 GCTCGGGTCTGGTAGGTTTAA 59.448 52.381 0.00 0.00 0.00 1.52
212 213 2.676176 GCTCGGGTCTGGTAGGTTTAAC 60.676 54.545 0.00 0.00 0.00 2.01
213 214 2.830321 CTCGGGTCTGGTAGGTTTAACT 59.170 50.000 0.00 0.00 0.00 2.24
214 215 2.564062 TCGGGTCTGGTAGGTTTAACTG 59.436 50.000 0.00 0.00 0.00 3.16
215 216 2.301009 CGGGTCTGGTAGGTTTAACTGT 59.699 50.000 0.00 0.00 0.00 3.55
216 217 3.671716 GGGTCTGGTAGGTTTAACTGTG 58.328 50.000 0.00 0.00 0.00 3.66
217 218 3.072038 GGGTCTGGTAGGTTTAACTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
218 219 4.445305 GGGTCTGGTAGGTTTAACTGTGTT 60.445 45.833 0.00 0.00 0.00 3.32
219 220 4.514066 GGTCTGGTAGGTTTAACTGTGTTG 59.486 45.833 0.00 0.00 0.00 3.33
220 221 5.121105 GTCTGGTAGGTTTAACTGTGTTGT 58.879 41.667 0.00 0.00 0.00 3.32
221 222 6.282930 GTCTGGTAGGTTTAACTGTGTTGTA 58.717 40.000 0.00 0.00 0.00 2.41
222 223 6.932960 GTCTGGTAGGTTTAACTGTGTTGTAT 59.067 38.462 0.00 0.00 0.00 2.29
223 224 7.117379 GTCTGGTAGGTTTAACTGTGTTGTATC 59.883 40.741 0.00 0.00 0.00 2.24
224 225 6.232692 TGGTAGGTTTAACTGTGTTGTATCC 58.767 40.000 0.00 0.00 0.00 2.59
225 226 6.043474 TGGTAGGTTTAACTGTGTTGTATCCT 59.957 38.462 0.00 0.00 0.00 3.24
226 227 6.592994 GGTAGGTTTAACTGTGTTGTATCCTC 59.407 42.308 0.00 0.00 0.00 3.71
227 228 6.435292 AGGTTTAACTGTGTTGTATCCTCT 57.565 37.500 0.00 0.00 0.00 3.69
228 229 6.231211 AGGTTTAACTGTGTTGTATCCTCTG 58.769 40.000 0.00 0.00 0.00 3.35
229 230 5.995897 GGTTTAACTGTGTTGTATCCTCTGT 59.004 40.000 0.00 0.00 0.00 3.41
230 231 7.015877 AGGTTTAACTGTGTTGTATCCTCTGTA 59.984 37.037 0.00 0.00 0.00 2.74
231 232 7.117379 GGTTTAACTGTGTTGTATCCTCTGTAC 59.883 40.741 0.00 0.00 0.00 2.90
232 233 4.436242 ACTGTGTTGTATCCTCTGTACG 57.564 45.455 0.00 0.00 0.00 3.67
233 234 3.192844 ACTGTGTTGTATCCTCTGTACGG 59.807 47.826 0.00 0.00 0.00 4.02
234 235 2.494471 TGTGTTGTATCCTCTGTACGGG 59.506 50.000 0.85 0.00 0.00 5.28
235 236 1.479323 TGTTGTATCCTCTGTACGGGC 59.521 52.381 0.85 0.00 0.00 6.13
236 237 1.755380 GTTGTATCCTCTGTACGGGCT 59.245 52.381 0.85 0.00 0.00 5.19
237 238 1.399714 TGTATCCTCTGTACGGGCTG 58.600 55.000 0.85 0.00 0.00 4.85
238 239 1.064240 TGTATCCTCTGTACGGGCTGA 60.064 52.381 0.00 0.00 0.00 4.26
239 240 1.609555 GTATCCTCTGTACGGGCTGAG 59.390 57.143 0.00 7.90 35.21 3.35
240 241 1.395826 ATCCTCTGTACGGGCTGAGC 61.396 60.000 0.00 0.00 34.44 4.26
241 242 2.351244 CCTCTGTACGGGCTGAGCA 61.351 63.158 6.82 0.00 34.44 4.26
242 243 1.680522 CCTCTGTACGGGCTGAGCAT 61.681 60.000 6.82 0.00 34.44 3.79
243 244 0.249238 CTCTGTACGGGCTGAGCATC 60.249 60.000 6.82 0.00 0.00 3.91
244 245 1.227380 CTGTACGGGCTGAGCATCC 60.227 63.158 6.82 0.00 0.00 3.51
245 246 2.109181 GTACGGGCTGAGCATCCC 59.891 66.667 6.82 0.00 39.17 3.85
246 247 2.041922 TACGGGCTGAGCATCCCT 60.042 61.111 6.82 0.00 40.41 4.20
247 248 1.689233 TACGGGCTGAGCATCCCTT 60.689 57.895 6.82 1.16 40.41 3.95
248 249 1.971505 TACGGGCTGAGCATCCCTTG 61.972 60.000 6.82 0.00 40.41 3.61
249 250 2.679716 GGGCTGAGCATCCCTTGT 59.320 61.111 6.82 0.00 39.46 3.16
250 251 1.452833 GGGCTGAGCATCCCTTGTC 60.453 63.158 6.82 0.00 39.46 3.18
251 252 1.452833 GGCTGAGCATCCCTTGTCC 60.453 63.158 6.82 0.00 0.00 4.02
252 253 1.452833 GCTGAGCATCCCTTGTCCC 60.453 63.158 0.00 0.00 0.00 4.46
253 254 1.225704 CTGAGCATCCCTTGTCCCC 59.774 63.158 0.00 0.00 0.00 4.81
254 255 2.276309 CTGAGCATCCCTTGTCCCCC 62.276 65.000 0.00 0.00 0.00 5.40
255 256 2.003548 GAGCATCCCTTGTCCCCCT 61.004 63.158 0.00 0.00 0.00 4.79
256 257 2.276309 GAGCATCCCTTGTCCCCCTG 62.276 65.000 0.00 0.00 0.00 4.45
257 258 2.276740 CATCCCTTGTCCCCCTGC 59.723 66.667 0.00 0.00 0.00 4.85
258 259 2.128226 ATCCCTTGTCCCCCTGCT 59.872 61.111 0.00 0.00 0.00 4.24
259 260 2.003548 ATCCCTTGTCCCCCTGCTC 61.004 63.158 0.00 0.00 0.00 4.26
260 261 3.732849 CCCTTGTCCCCCTGCTCC 61.733 72.222 0.00 0.00 0.00 4.70
261 262 4.101448 CCTTGTCCCCCTGCTCCG 62.101 72.222 0.00 0.00 0.00 4.63
262 263 4.101448 CTTGTCCCCCTGCTCCGG 62.101 72.222 0.00 0.00 0.00 5.14
280 281 2.555123 GGCACCATGTACACACCTG 58.445 57.895 0.00 0.00 0.00 4.00
281 282 1.586154 GGCACCATGTACACACCTGC 61.586 60.000 0.00 2.86 0.00 4.85
282 283 1.586154 GCACCATGTACACACCTGCC 61.586 60.000 0.00 0.00 0.00 4.85
283 284 0.036732 CACCATGTACACACCTGCCT 59.963 55.000 0.00 0.00 0.00 4.75
284 285 0.036732 ACCATGTACACACCTGCCTG 59.963 55.000 0.00 0.00 0.00 4.85
285 286 1.308069 CCATGTACACACCTGCCTGC 61.308 60.000 0.00 0.00 0.00 4.85
286 287 1.375908 ATGTACACACCTGCCTGCG 60.376 57.895 0.00 0.00 0.00 5.18
287 288 2.030562 GTACACACCTGCCTGCGT 59.969 61.111 0.00 0.00 0.00 5.24
288 289 1.597027 GTACACACCTGCCTGCGTT 60.597 57.895 0.00 0.00 0.00 4.84
289 290 1.301401 TACACACCTGCCTGCGTTC 60.301 57.895 0.00 0.00 0.00 3.95
290 291 3.716006 CACACCTGCCTGCGTTCG 61.716 66.667 0.00 0.00 0.00 3.95
291 292 4.235762 ACACCTGCCTGCGTTCGT 62.236 61.111 0.00 0.00 0.00 3.85
292 293 3.716006 CACCTGCCTGCGTTCGTG 61.716 66.667 0.00 0.00 0.00 4.35
293 294 4.235762 ACCTGCCTGCGTTCGTGT 62.236 61.111 0.00 0.00 0.00 4.49
294 295 3.414700 CCTGCCTGCGTTCGTGTC 61.415 66.667 0.00 0.00 0.00 3.67
295 296 2.661537 CTGCCTGCGTTCGTGTCA 60.662 61.111 0.00 0.00 0.00 3.58
296 297 2.029288 CTGCCTGCGTTCGTGTCAT 61.029 57.895 0.00 0.00 0.00 3.06
297 298 2.231745 CTGCCTGCGTTCGTGTCATG 62.232 60.000 0.00 0.00 0.00 3.07
298 299 2.317609 GCCTGCGTTCGTGTCATGT 61.318 57.895 0.00 0.00 0.00 3.21
299 300 1.492873 CCTGCGTTCGTGTCATGTG 59.507 57.895 0.00 0.00 0.00 3.21
300 301 1.221466 CCTGCGTTCGTGTCATGTGT 61.221 55.000 0.00 0.00 0.00 3.72
301 302 0.581529 CTGCGTTCGTGTCATGTGTT 59.418 50.000 0.00 0.00 0.00 3.32
302 303 0.303191 TGCGTTCGTGTCATGTGTTG 59.697 50.000 0.00 0.00 0.00 3.33
303 304 0.303493 GCGTTCGTGTCATGTGTTGT 59.697 50.000 0.00 0.00 0.00 3.32
304 305 1.523515 GCGTTCGTGTCATGTGTTGTA 59.476 47.619 0.00 0.00 0.00 2.41
305 306 2.156891 GCGTTCGTGTCATGTGTTGTAT 59.843 45.455 0.00 0.00 0.00 2.29
306 307 3.720920 GCGTTCGTGTCATGTGTTGTATC 60.721 47.826 0.00 0.00 0.00 2.24
307 308 3.181534 CGTTCGTGTCATGTGTTGTATCC 60.182 47.826 0.00 0.00 0.00 2.59
308 309 2.967362 TCGTGTCATGTGTTGTATCCC 58.033 47.619 0.00 0.00 0.00 3.85
309 310 2.565391 TCGTGTCATGTGTTGTATCCCT 59.435 45.455 0.00 0.00 0.00 4.20
310 311 2.672874 CGTGTCATGTGTTGTATCCCTG 59.327 50.000 0.00 0.00 0.00 4.45
311 312 3.674997 GTGTCATGTGTTGTATCCCTGT 58.325 45.455 0.00 0.00 0.00 4.00
312 313 3.436704 GTGTCATGTGTTGTATCCCTGTG 59.563 47.826 0.00 0.00 0.00 3.66
313 314 3.072330 TGTCATGTGTTGTATCCCTGTGT 59.928 43.478 0.00 0.00 0.00 3.72
314 315 4.284746 TGTCATGTGTTGTATCCCTGTGTA 59.715 41.667 0.00 0.00 0.00 2.90
315 316 4.630069 GTCATGTGTTGTATCCCTGTGTAC 59.370 45.833 0.00 0.00 0.00 2.90
316 317 4.530553 TCATGTGTTGTATCCCTGTGTACT 59.469 41.667 0.00 0.00 0.00 2.73
317 318 4.530710 TGTGTTGTATCCCTGTGTACTC 57.469 45.455 0.00 0.00 0.00 2.59
318 319 3.898741 TGTGTTGTATCCCTGTGTACTCA 59.101 43.478 0.00 0.00 0.00 3.41
319 320 4.243270 GTGTTGTATCCCTGTGTACTCAC 58.757 47.826 0.00 0.00 44.08 3.51
320 321 4.021368 GTGTTGTATCCCTGTGTACTCACT 60.021 45.833 0.00 0.00 44.14 3.41
321 322 4.219944 TGTTGTATCCCTGTGTACTCACTC 59.780 45.833 0.00 0.00 44.14 3.51
322 323 3.362706 TGTATCCCTGTGTACTCACTCC 58.637 50.000 0.00 0.00 44.14 3.85
323 324 2.623418 ATCCCTGTGTACTCACTCCA 57.377 50.000 0.00 0.00 44.14 3.86
324 325 1.629043 TCCCTGTGTACTCACTCCAC 58.371 55.000 0.00 0.00 44.14 4.02
325 326 1.147191 TCCCTGTGTACTCACTCCACT 59.853 52.381 0.00 0.00 44.14 4.00
326 327 1.546476 CCCTGTGTACTCACTCCACTC 59.454 57.143 0.00 0.00 44.14 3.51
327 328 1.546476 CCTGTGTACTCACTCCACTCC 59.454 57.143 0.00 0.00 44.14 3.85
328 329 2.520069 CTGTGTACTCACTCCACTCCT 58.480 52.381 0.00 0.00 44.14 3.69
329 330 2.894126 CTGTGTACTCACTCCACTCCTT 59.106 50.000 0.00 0.00 44.14 3.36
330 331 2.891580 TGTGTACTCACTCCACTCCTTC 59.108 50.000 0.00 0.00 44.14 3.46
331 332 3.158676 GTGTACTCACTCCACTCCTTCT 58.841 50.000 0.00 0.00 40.98 2.85
332 333 4.202535 TGTGTACTCACTCCACTCCTTCTA 60.203 45.833 0.00 0.00 44.14 2.10
333 334 4.951094 GTGTACTCACTCCACTCCTTCTAT 59.049 45.833 0.00 0.00 40.98 1.98
334 335 5.066764 GTGTACTCACTCCACTCCTTCTATC 59.933 48.000 0.00 0.00 40.98 2.08
335 336 4.323569 ACTCACTCCACTCCTTCTATCA 57.676 45.455 0.00 0.00 0.00 2.15
336 337 4.678256 ACTCACTCCACTCCTTCTATCAA 58.322 43.478 0.00 0.00 0.00 2.57
337 338 5.276440 ACTCACTCCACTCCTTCTATCAAT 58.724 41.667 0.00 0.00 0.00 2.57
338 339 5.128499 ACTCACTCCACTCCTTCTATCAATG 59.872 44.000 0.00 0.00 0.00 2.82
339 340 5.272402 TCACTCCACTCCTTCTATCAATGA 58.728 41.667 0.00 0.00 0.00 2.57
340 341 5.721480 TCACTCCACTCCTTCTATCAATGAA 59.279 40.000 0.00 0.00 0.00 2.57
341 342 6.213397 TCACTCCACTCCTTCTATCAATGAAA 59.787 38.462 0.00 0.00 0.00 2.69
342 343 7.052873 CACTCCACTCCTTCTATCAATGAAAT 58.947 38.462 0.00 0.00 0.00 2.17
343 344 7.012138 CACTCCACTCCTTCTATCAATGAAATG 59.988 40.741 0.00 0.00 0.00 2.32
344 345 7.092712 ACTCCACTCCTTCTATCAATGAAATGA 60.093 37.037 0.00 0.00 0.00 2.57
345 346 7.809238 TCCACTCCTTCTATCAATGAAATGAT 58.191 34.615 0.00 0.00 42.52 2.45
346 347 8.937835 TCCACTCCTTCTATCAATGAAATGATA 58.062 33.333 0.00 0.00 40.44 2.15
347 348 8.997323 CCACTCCTTCTATCAATGAAATGATAC 58.003 37.037 0.00 0.00 40.44 2.24
348 349 8.706936 CACTCCTTCTATCAATGAAATGATACG 58.293 37.037 0.00 0.00 40.44 3.06
349 350 7.386299 ACTCCTTCTATCAATGAAATGATACGC 59.614 37.037 0.00 0.00 40.44 4.42
350 351 7.216494 TCCTTCTATCAATGAAATGATACGCA 58.784 34.615 0.00 0.00 40.44 5.24
351 352 7.714813 TCCTTCTATCAATGAAATGATACGCAA 59.285 33.333 0.00 0.00 40.44 4.85
352 353 8.013947 CCTTCTATCAATGAAATGATACGCAAG 58.986 37.037 0.00 0.00 40.44 4.01
353 354 6.891624 TCTATCAATGAAATGATACGCAAGC 58.108 36.000 0.00 0.00 40.44 4.01
354 355 5.762825 ATCAATGAAATGATACGCAAGCT 57.237 34.783 0.00 0.00 38.25 3.74
355 356 5.565592 TCAATGAAATGATACGCAAGCTT 57.434 34.783 0.00 0.00 45.62 3.74
356 357 5.953183 TCAATGAAATGATACGCAAGCTTT 58.047 33.333 0.00 0.00 45.62 3.51
357 358 5.801444 TCAATGAAATGATACGCAAGCTTTG 59.199 36.000 0.00 0.00 45.62 2.77
358 359 8.833450 ATCAATGAAATGATACGCAAGCTTTGC 61.833 37.037 0.00 3.35 44.24 3.68
452 453 5.007034 TCGGTTAATGGATGACATGTTTGT 58.993 37.500 0.00 0.00 40.44 2.83
473 474 3.131400 GTGAGTGGTTCTATGAGGAGACC 59.869 52.174 0.00 0.00 0.00 3.85
507 508 7.613801 ACACGATATGAGATTCTTAGCTATCCT 59.386 37.037 0.00 0.00 0.00 3.24
579 580 9.799106 ATACTCCAATCCATCCTAAAATAAGTG 57.201 33.333 0.00 0.00 0.00 3.16
580 581 7.872138 ACTCCAATCCATCCTAAAATAAGTGA 58.128 34.615 0.00 0.00 0.00 3.41
581 582 7.775561 ACTCCAATCCATCCTAAAATAAGTGAC 59.224 37.037 0.00 0.00 0.00 3.67
582 583 7.872138 TCCAATCCATCCTAAAATAAGTGACT 58.128 34.615 0.00 0.00 0.00 3.41
583 584 7.993183 TCCAATCCATCCTAAAATAAGTGACTC 59.007 37.037 0.00 0.00 0.00 3.36
584 585 7.775093 CCAATCCATCCTAAAATAAGTGACTCA 59.225 37.037 0.00 0.00 0.00 3.41
585 586 9.177608 CAATCCATCCTAAAATAAGTGACTCAA 57.822 33.333 0.00 0.00 0.00 3.02
586 587 8.738645 ATCCATCCTAAAATAAGTGACTCAAC 57.261 34.615 0.00 0.00 0.00 3.18
587 588 7.918076 TCCATCCTAAAATAAGTGACTCAACT 58.082 34.615 0.00 0.00 0.00 3.16
588 589 8.383175 TCCATCCTAAAATAAGTGACTCAACTT 58.617 33.333 0.00 0.00 42.89 2.66
589 590 9.014297 CCATCCTAAAATAAGTGACTCAACTTT 57.986 33.333 0.00 0.00 40.77 2.66
590 591 9.831737 CATCCTAAAATAAGTGACTCAACTTTG 57.168 33.333 0.00 0.00 40.77 2.77
591 592 8.974060 TCCTAAAATAAGTGACTCAACTTTGT 57.026 30.769 0.00 0.00 40.77 2.83
602 603 9.174166 AGTGACTCAACTTTGTATTAAACTTGT 57.826 29.630 0.00 0.00 0.00 3.16
605 606 9.577003 GACTCAACTTTGTATTAAACTTGTACG 57.423 33.333 0.00 0.00 0.00 3.67
606 607 8.553696 ACTCAACTTTGTATTAAACTTGTACGG 58.446 33.333 0.00 0.00 0.00 4.02
607 608 8.659925 TCAACTTTGTATTAAACTTGTACGGA 57.340 30.769 0.00 0.00 0.00 4.69
608 609 8.767085 TCAACTTTGTATTAAACTTGTACGGAG 58.233 33.333 0.00 0.00 0.00 4.63
609 610 7.662604 ACTTTGTATTAAACTTGTACGGAGG 57.337 36.000 1.75 0.00 0.00 4.30
610 611 6.652062 ACTTTGTATTAAACTTGTACGGAGGG 59.348 38.462 1.75 0.00 0.00 4.30
611 612 5.999205 TGTATTAAACTTGTACGGAGGGA 57.001 39.130 1.75 0.00 0.00 4.20
612 613 5.969423 TGTATTAAACTTGTACGGAGGGAG 58.031 41.667 1.75 0.00 0.00 4.30
613 614 5.481473 TGTATTAAACTTGTACGGAGGGAGT 59.519 40.000 1.75 0.00 0.00 3.85
614 615 6.663093 TGTATTAAACTTGTACGGAGGGAGTA 59.337 38.462 1.75 0.00 0.00 2.59
615 616 6.803366 ATTAAACTTGTACGGAGGGAGTAT 57.197 37.500 1.75 0.00 0.00 2.12
618 619 5.588958 AACTTGTACGGAGGGAGTATAAC 57.411 43.478 1.75 0.00 0.00 1.89
627 628 4.645588 CGGAGGGAGTATAACAAGAAGAGT 59.354 45.833 0.00 0.00 0.00 3.24
638 639 9.350357 GTATAACAAGAAGAGTCGTGTAATCAA 57.650 33.333 0.00 0.00 44.44 2.57
641 642 5.221461 ACAAGAAGAGTCGTGTAATCAAGGT 60.221 40.000 0.00 0.00 43.55 3.50
658 659 0.596082 GGTCACCACGGTTTCAATGG 59.404 55.000 0.00 0.00 39.57 3.16
674 676 2.399607 TGGTGGTCCCAAAAGCCCT 61.400 57.895 0.00 0.00 41.50 5.19
826 936 9.392506 TCAATATTATCAGGAATAGGAGGTTGA 57.607 33.333 0.00 0.00 0.00 3.18
934 1048 8.328146 GCTCACACAAAATAGGAAAAGAAAAAC 58.672 33.333 0.00 0.00 0.00 2.43
940 1054 9.936759 ACAAAATAGGAAAAGAAAAACAGAACA 57.063 25.926 0.00 0.00 0.00 3.18
993 1107 0.890996 CCACCTCCAACAACCAGAGC 60.891 60.000 0.00 0.00 0.00 4.09
998 1112 1.893808 CCAACAACCAGAGCGCACT 60.894 57.895 11.47 5.59 0.00 4.40
999 1113 1.571460 CAACAACCAGAGCGCACTC 59.429 57.895 11.47 0.00 43.82 3.51
1000 1114 1.146041 AACAACCAGAGCGCACTCA 59.854 52.632 11.47 0.00 46.09 3.41
1031 1145 4.096003 CGGTGCGATGGAACCCCT 62.096 66.667 0.00 0.00 38.87 4.79
1294 1425 3.805307 CGTGACCTCTCGCGCTCT 61.805 66.667 5.56 0.00 43.08 4.09
1296 1427 1.080434 GTGACCTCTCGCGCTCTTT 60.080 57.895 5.56 0.00 0.00 2.52
1304 1435 1.964290 CTCGCGCTCTTTGCTCTTGG 61.964 60.000 5.56 0.00 40.11 3.61
1309 1440 0.376502 GCTCTTTGCTCTTGGATCGC 59.623 55.000 0.00 0.00 38.95 4.58
1351 1482 3.607078 CGACGCTTTGGGAAGAAGAAAAG 60.607 47.826 0.00 0.00 34.71 2.27
1352 1483 3.551846 ACGCTTTGGGAAGAAGAAAAGA 58.448 40.909 0.00 0.00 34.71 2.52
1353 1484 3.951680 ACGCTTTGGGAAGAAGAAAAGAA 59.048 39.130 0.00 0.00 34.71 2.52
1354 1485 4.401202 ACGCTTTGGGAAGAAGAAAAGAAA 59.599 37.500 0.00 0.00 34.71 2.52
1355 1486 5.069119 ACGCTTTGGGAAGAAGAAAAGAAAT 59.931 36.000 0.00 0.00 34.71 2.17
1356 1487 5.403466 CGCTTTGGGAAGAAGAAAAGAAATG 59.597 40.000 0.00 0.00 34.71 2.32
1357 1488 5.698089 GCTTTGGGAAGAAGAAAAGAAATGG 59.302 40.000 0.00 0.00 34.71 3.16
1358 1489 6.462909 GCTTTGGGAAGAAGAAAAGAAATGGA 60.463 38.462 0.00 0.00 34.71 3.41
1359 1490 6.405278 TTGGGAAGAAGAAAAGAAATGGAC 57.595 37.500 0.00 0.00 0.00 4.02
1390 1522 5.392767 TCTTTCTTGATTAGACTGCGAGT 57.607 39.130 0.00 0.00 30.90 4.18
1399 1531 2.125912 ACTGCGAGTTAGCGGCTG 60.126 61.111 13.86 0.00 46.91 4.85
1406 1538 0.595310 GAGTTAGCGGCTGGATCGTC 60.595 60.000 13.86 0.00 0.00 4.20
1433 1565 6.149474 CGAGGTTATTTCTTCCTGTGATTGTT 59.851 38.462 0.00 0.00 0.00 2.83
1452 1584 3.863424 TGTTAAGCTGAATCGACGATTCC 59.137 43.478 35.46 25.31 45.37 3.01
1491 1623 3.981071 TCTTGATACACTCCCTGGTTG 57.019 47.619 0.00 0.00 0.00 3.77
1492 1624 3.248024 TCTTGATACACTCCCTGGTTGT 58.752 45.455 0.00 0.00 0.00 3.32
1493 1625 3.650942 TCTTGATACACTCCCTGGTTGTT 59.349 43.478 0.00 0.00 0.00 2.83
1494 1626 4.841813 TCTTGATACACTCCCTGGTTGTTA 59.158 41.667 0.00 0.00 0.00 2.41
1495 1627 5.308497 TCTTGATACACTCCCTGGTTGTTAA 59.692 40.000 0.00 0.00 0.00 2.01
1496 1628 5.160607 TGATACACTCCCTGGTTGTTAAG 57.839 43.478 0.00 0.00 0.00 1.85
1497 1629 4.595781 TGATACACTCCCTGGTTGTTAAGT 59.404 41.667 0.00 0.00 0.00 2.24
1498 1630 5.781306 TGATACACTCCCTGGTTGTTAAGTA 59.219 40.000 0.00 0.00 0.00 2.24
1499 1631 6.442564 TGATACACTCCCTGGTTGTTAAGTAT 59.557 38.462 0.00 0.00 0.00 2.12
1500 1632 7.620491 TGATACACTCCCTGGTTGTTAAGTATA 59.380 37.037 0.00 0.00 0.00 1.47
1501 1633 6.886178 ACACTCCCTGGTTGTTAAGTATAT 57.114 37.500 0.00 0.00 0.00 0.86
1502 1634 7.983166 ACACTCCCTGGTTGTTAAGTATATA 57.017 36.000 0.00 0.00 0.00 0.86
1503 1635 8.562949 ACACTCCCTGGTTGTTAAGTATATAT 57.437 34.615 0.00 0.00 0.00 0.86
1504 1636 9.664777 ACACTCCCTGGTTGTTAAGTATATATA 57.335 33.333 0.00 0.00 0.00 0.86
1560 1693 7.050970 AGCTGATCTATTGTACGGTGAATTA 57.949 36.000 0.00 0.00 0.00 1.40
1572 1705 7.324935 TGTACGGTGAATTAATTTAGCTCTGA 58.675 34.615 16.97 1.19 0.00 3.27
1573 1706 7.820386 TGTACGGTGAATTAATTTAGCTCTGAA 59.180 33.333 16.97 0.94 0.00 3.02
1574 1707 7.073342 ACGGTGAATTAATTTAGCTCTGAAC 57.927 36.000 16.97 0.00 0.00 3.18
1575 1708 6.879458 ACGGTGAATTAATTTAGCTCTGAACT 59.121 34.615 16.97 0.00 0.00 3.01
1576 1709 8.038944 ACGGTGAATTAATTTAGCTCTGAACTA 58.961 33.333 16.97 0.00 0.00 2.24
1625 1772 9.502091 AATAGATCAGCTCTGAACTAGTAGTAG 57.498 37.037 17.70 2.87 44.43 2.57
1626 1773 6.895782 AGATCAGCTCTGAACTAGTAGTAGT 58.104 40.000 2.50 4.29 43.58 2.73
1627 1774 8.025270 AGATCAGCTCTGAACTAGTAGTAGTA 57.975 38.462 10.68 0.00 43.58 1.82
1634 1781 9.382275 GCTCTGAACTAGTAGTAGTACTAAACT 57.618 37.037 16.46 18.33 40.54 2.66
1639 1786 9.225436 GAACTAGTAGTAGTACTAAACTGTGGT 57.775 37.037 21.35 15.23 40.54 4.16
1653 1800 8.095169 ACTAAACTGTGGTTGTCTTATTAGAGG 58.905 37.037 0.00 0.00 35.63 3.69
1657 1805 5.974108 TGTGGTTGTCTTATTAGAGGCTAC 58.026 41.667 0.00 0.00 0.00 3.58
1674 1822 3.181480 GGCTACTTGTCCTCAGATGTCTC 60.181 52.174 0.00 0.00 0.00 3.36
1678 1826 4.079970 ACTTGTCCTCAGATGTCTCGTTA 58.920 43.478 0.00 0.00 0.00 3.18
1745 1893 6.016276 AGTGTATTTTGATGGTGAGGTTCAAC 60.016 38.462 0.00 0.00 33.88 3.18
1751 1899 3.066064 TGATGGTGAGGTTCAACGTTTTG 59.934 43.478 0.00 0.00 36.73 2.44
1758 1906 2.554893 AGGTTCAACGTTTTGTGTGTGT 59.445 40.909 0.00 0.00 34.02 3.72
1762 1910 5.448089 GGTTCAACGTTTTGTGTGTGTCTAT 60.448 40.000 0.00 0.00 34.02 1.98
1770 1918 6.844279 CGTTTTGTGTGTGTCTATTTGAGTAC 59.156 38.462 0.00 0.00 0.00 2.73
1773 1921 8.500753 TTTGTGTGTGTCTATTTGAGTACTTT 57.499 30.769 0.00 0.00 0.00 2.66
1868 2016 4.764172 AGACAAGTACAGATGATGGAAGC 58.236 43.478 0.00 0.00 0.00 3.86
1869 2017 3.525537 ACAAGTACAGATGATGGAAGCG 58.474 45.455 0.00 0.00 0.00 4.68
1876 2024 2.479275 CAGATGATGGAAGCGTGCATAG 59.521 50.000 6.63 0.00 35.67 2.23
2006 2160 6.449041 AGTTAATTTAATCTACCCCTGTCCCA 59.551 38.462 0.00 0.00 0.00 4.37
2030 2185 4.666512 ACAGATTTATGTCTTGCCTTGGT 58.333 39.130 0.00 0.00 0.00 3.67
2061 2216 0.458025 GAACCCGTCTAGTTCCGCAG 60.458 60.000 0.00 0.00 38.12 5.18
2132 2287 2.505819 ACCAGATCCTGTGTGTTATCCC 59.494 50.000 0.00 0.00 0.00 3.85
2142 2297 4.637276 TGTGTGTTATCCCACAGTACTTG 58.363 43.478 0.00 0.00 45.45 3.16
2172 2327 6.543831 GTCCTCATTCATAGCTTTGGTGTTAT 59.456 38.462 4.23 0.00 0.00 1.89
2213 2370 4.401525 GTTCATCAACTGCTGAACTCTG 57.598 45.455 15.70 0.00 43.74 3.35
2314 2471 0.764890 CTGTCCCCTCAGTTGTGGAA 59.235 55.000 1.92 0.00 0.00 3.53
2325 2482 5.817816 CCTCAGTTGTGGAATATGGAACTAC 59.182 44.000 0.00 0.00 0.00 2.73
2596 2753 5.847111 AGCAATGTGAATATGACATGCTT 57.153 34.783 0.00 0.00 36.04 3.91
2605 2762 7.611467 TGTGAATATGACATGCTTTTACTTCCT 59.389 33.333 0.00 0.00 0.00 3.36
2648 2805 8.703378 TGATTATATGCAACATTTGTGGGATA 57.297 30.769 2.28 2.28 36.83 2.59
3069 3237 7.039882 CACCTACACTCGGAACTTATGTTAAT 58.960 38.462 0.00 0.00 36.39 1.40
3122 3290 6.419791 TGGTCGGTGTATTCTTCCATTTTAT 58.580 36.000 0.00 0.00 0.00 1.40
3178 3355 6.727824 ATCATTTTTACTGACAGAAGACCG 57.272 37.500 10.08 0.00 0.00 4.79
3425 3602 1.139989 CAGTAGCACACCACTGTTCG 58.860 55.000 0.00 0.00 37.87 3.95
3453 3630 1.745141 GCCTCTGGCCATGTAACTCAG 60.745 57.143 5.51 0.00 44.06 3.35
3475 3652 6.643770 TCAGTTACGTAAAGGTTTCAGATGAC 59.356 38.462 10.11 0.00 0.00 3.06
3511 3689 0.533032 AGGAGCGAGTCTACAAAGGC 59.467 55.000 0.00 0.00 0.00 4.35
3515 3693 1.888018 CGAGTCTACAAAGGCGGGA 59.112 57.895 0.00 0.00 30.45 5.14
3607 3788 2.076863 CTTTGCCCTCCTCGTTGTTAG 58.923 52.381 0.00 0.00 0.00 2.34
3733 3918 3.950794 CTTTGGGCACGGCGAGCTA 62.951 63.158 27.09 14.83 0.00 3.32
3784 3969 0.670546 CTTGGCACAGGAACGACGAT 60.671 55.000 0.00 0.00 42.39 3.73
3811 3996 1.618861 CGGTGAGAACAGATGACGTC 58.381 55.000 9.11 9.11 0.00 4.34
3993 4183 6.979238 GTGTAAGACTACCTGCTAAACCATAG 59.021 42.308 0.00 0.00 0.00 2.23
4059 4249 2.717639 ACTCCATGTCATAGTTGGCC 57.282 50.000 0.00 0.00 0.00 5.36
4138 5780 2.376808 ACTGCATCCAGAAGAAGTCG 57.623 50.000 0.00 0.00 41.77 4.18
4149 5791 7.411486 TCCAGAAGAAGTCGAGAGAAATTAT 57.589 36.000 0.00 0.00 45.01 1.28
4155 5812 7.954788 AGAAGTCGAGAGAAATTATTATGGC 57.045 36.000 0.00 0.00 45.01 4.40
4158 5815 7.721286 AGTCGAGAGAAATTATTATGGCTTG 57.279 36.000 0.00 0.00 45.01 4.01
4179 5836 0.322975 AGTTCTCATCCTTGCAGCGT 59.677 50.000 0.00 0.00 0.00 5.07
4215 5872 2.687805 CGACTCGAAGACGGCCAGA 61.688 63.158 2.24 0.00 40.21 3.86
4230 5887 1.338200 GCCAGAACACGATCCAACTCT 60.338 52.381 0.00 0.00 0.00 3.24
4232 5889 1.728971 CAGAACACGATCCAACTCTGC 59.271 52.381 0.00 0.00 0.00 4.26
4245 5902 3.965026 CTCTGCCTCGTCCTCCCCA 62.965 68.421 0.00 0.00 0.00 4.96
4437 6094 2.349590 TCCAGCACGATCAGATGTTTG 58.650 47.619 0.00 0.00 0.00 2.93
4450 6107 5.084519 TCAGATGTTTGACTAGTACCTGGT 58.915 41.667 4.05 4.05 0.00 4.00
4451 6108 5.047306 TCAGATGTTTGACTAGTACCTGGTG 60.047 44.000 10.23 0.00 0.00 4.17
4452 6109 5.047306 CAGATGTTTGACTAGTACCTGGTGA 60.047 44.000 10.23 0.00 0.00 4.02
4472 6129 2.806856 CTGAAGCTGCGTCGATGGC 61.807 63.158 10.83 5.60 0.00 4.40
4579 6236 2.506438 GGTCGCCTGTGCTACGTC 60.506 66.667 0.00 0.00 34.16 4.34
4590 6247 0.602638 TGCTACGTCTGGGCTTGTTG 60.603 55.000 0.00 0.00 0.00 3.33
4602 6259 2.223572 GGGCTTGTTGTTCTGTGTCTTG 60.224 50.000 0.00 0.00 0.00 3.02
4605 6262 3.731867 GCTTGTTGTTCTGTGTCTTGGTG 60.732 47.826 0.00 0.00 0.00 4.17
4649 6306 2.806745 CGAGTTTGGCAAGAGGAGAACA 60.807 50.000 0.00 0.00 0.00 3.18
4662 6319 1.079503 GAGAACATCTTGACGGCCAC 58.920 55.000 2.24 0.00 0.00 5.01
4809 6469 1.541588 GCATTTTCAGTTTCTCCGCCT 59.458 47.619 0.00 0.00 0.00 5.52
4820 6480 0.909610 TCTCCGCCTCCAAGTCCAAT 60.910 55.000 0.00 0.00 0.00 3.16
4827 6487 3.279434 GCCTCCAAGTCCAATATTCGTT 58.721 45.455 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.035312 AGCTGAAGGCCTTGGCAG 59.965 61.111 29.90 26.99 43.05 4.85
1 2 2.282674 CAGCTGAAGGCCTTGGCA 60.283 61.111 29.90 20.23 43.05 4.92
2 3 3.756727 GCAGCTGAAGGCCTTGGC 61.757 66.667 26.25 25.15 43.05 4.52
3 4 2.282674 TGCAGCTGAAGGCCTTGG 60.283 61.111 26.25 16.43 43.05 3.61
4 5 2.633509 GGTGCAGCTGAAGGCCTTG 61.634 63.158 26.25 11.04 43.05 3.61
5 6 2.282745 GGTGCAGCTGAAGGCCTT 60.283 61.111 20.65 20.65 43.05 4.35
6 7 4.357279 GGGTGCAGCTGAAGGCCT 62.357 66.667 20.43 0.00 43.05 5.19
8 9 4.357279 AGGGGTGCAGCTGAAGGC 62.357 66.667 20.43 1.45 42.19 4.35
9 10 2.045536 GAGGGGTGCAGCTGAAGG 60.046 66.667 20.43 0.00 0.00 3.46
10 11 0.251077 AAAGAGGGGTGCAGCTGAAG 60.251 55.000 20.43 0.00 0.00 3.02
11 12 0.538057 CAAAGAGGGGTGCAGCTGAA 60.538 55.000 20.43 2.96 0.00 3.02
12 13 1.073722 CAAAGAGGGGTGCAGCTGA 59.926 57.895 20.43 0.00 0.00 4.26
13 14 0.959372 CTCAAAGAGGGGTGCAGCTG 60.959 60.000 16.65 10.11 0.00 4.24
14 15 1.377994 CTCAAAGAGGGGTGCAGCT 59.622 57.895 16.65 0.00 0.00 4.24
15 16 2.338785 GCTCAAAGAGGGGTGCAGC 61.339 63.158 7.55 7.55 0.00 5.25
16 17 0.676151 GAGCTCAAAGAGGGGTGCAG 60.676 60.000 9.40 0.00 0.00 4.41
17 18 1.376466 GAGCTCAAAGAGGGGTGCA 59.624 57.895 9.40 0.00 0.00 4.57
18 19 0.676151 CTGAGCTCAAAGAGGGGTGC 60.676 60.000 18.85 0.00 0.00 5.01
19 20 0.035630 CCTGAGCTCAAAGAGGGGTG 60.036 60.000 18.85 2.23 0.00 4.61
20 21 1.204113 CCCTGAGCTCAAAGAGGGGT 61.204 60.000 24.76 0.00 41.51 4.95
21 22 1.606531 CCCTGAGCTCAAAGAGGGG 59.393 63.158 24.76 22.58 41.51 4.79
22 23 0.911525 TCCCCTGAGCTCAAAGAGGG 60.912 60.000 25.28 25.28 44.43 4.30
23 24 0.987294 TTCCCCTGAGCTCAAAGAGG 59.013 55.000 18.85 14.92 0.00 3.69
24 25 2.431454 GTTTCCCCTGAGCTCAAAGAG 58.569 52.381 18.85 5.76 0.00 2.85
25 26 1.073923 GGTTTCCCCTGAGCTCAAAGA 59.926 52.381 18.85 11.58 0.00 2.52
26 27 1.539157 GGTTTCCCCTGAGCTCAAAG 58.461 55.000 18.85 11.96 0.00 2.77
27 28 3.745723 GGTTTCCCCTGAGCTCAAA 57.254 52.632 18.85 6.14 0.00 2.69
38 39 2.372890 CCCGGACCTAGGGTTTCCC 61.373 68.421 14.81 5.14 45.90 3.97
39 40 3.317109 CCCGGACCTAGGGTTTCC 58.683 66.667 14.81 10.29 43.89 3.13
45 46 2.123382 GAGGGACCCGGACCTAGG 60.123 72.222 7.41 7.41 37.18 3.02
46 47 2.518825 CGAGGGACCCGGACCTAG 60.519 72.222 0.73 4.13 37.18 3.02
57 58 1.152819 CACTATCCGGTCCGAGGGA 60.153 63.158 14.39 1.36 36.61 4.20
58 59 0.539901 ATCACTATCCGGTCCGAGGG 60.540 60.000 14.39 3.22 0.00 4.30
59 60 0.598562 CATCACTATCCGGTCCGAGG 59.401 60.000 14.39 0.00 0.00 4.63
60 61 0.598562 CCATCACTATCCGGTCCGAG 59.401 60.000 14.39 4.72 0.00 4.63
61 62 0.106369 ACCATCACTATCCGGTCCGA 60.106 55.000 14.39 0.00 0.00 4.55
62 63 0.032130 CACCATCACTATCCGGTCCG 59.968 60.000 3.60 3.60 0.00 4.79
63 64 1.068741 GACACCATCACTATCCGGTCC 59.931 57.143 0.00 0.00 0.00 4.46
64 65 2.032620 AGACACCATCACTATCCGGTC 58.967 52.381 0.00 0.00 0.00 4.79
65 66 2.032620 GAGACACCATCACTATCCGGT 58.967 52.381 0.00 0.00 0.00 5.28
66 67 1.001268 CGAGACACCATCACTATCCGG 60.001 57.143 0.00 0.00 0.00 5.14
67 68 1.001268 CCGAGACACCATCACTATCCG 60.001 57.143 0.00 0.00 0.00 4.18
68 69 2.032620 ACCGAGACACCATCACTATCC 58.967 52.381 0.00 0.00 0.00 2.59
69 70 2.427453 ACACCGAGACACCATCACTATC 59.573 50.000 0.00 0.00 0.00 2.08
70 71 2.427453 GACACCGAGACACCATCACTAT 59.573 50.000 0.00 0.00 0.00 2.12
71 72 1.816835 GACACCGAGACACCATCACTA 59.183 52.381 0.00 0.00 0.00 2.74
72 73 0.603569 GACACCGAGACACCATCACT 59.396 55.000 0.00 0.00 0.00 3.41
73 74 0.732880 CGACACCGAGACACCATCAC 60.733 60.000 0.00 0.00 38.22 3.06
74 75 1.176619 ACGACACCGAGACACCATCA 61.177 55.000 0.00 0.00 39.50 3.07
75 76 0.806868 TACGACACCGAGACACCATC 59.193 55.000 0.00 0.00 39.50 3.51
76 77 1.471119 ATACGACACCGAGACACCAT 58.529 50.000 0.00 0.00 39.50 3.55
77 78 1.200716 GAATACGACACCGAGACACCA 59.799 52.381 0.00 0.00 39.50 4.17
78 79 1.468736 GGAATACGACACCGAGACACC 60.469 57.143 0.00 0.00 39.50 4.16
79 80 1.471684 AGGAATACGACACCGAGACAC 59.528 52.381 0.00 0.00 39.50 3.67
80 81 1.830279 AGGAATACGACACCGAGACA 58.170 50.000 0.00 0.00 39.50 3.41
81 82 2.422832 AGAAGGAATACGACACCGAGAC 59.577 50.000 0.00 0.00 39.50 3.36
82 83 2.719739 AGAAGGAATACGACACCGAGA 58.280 47.619 0.00 0.00 39.50 4.04
83 84 3.119602 TCAAGAAGGAATACGACACCGAG 60.120 47.826 0.00 0.00 39.50 4.63
84 85 2.821378 TCAAGAAGGAATACGACACCGA 59.179 45.455 0.00 0.00 39.50 4.69
85 86 3.226346 TCAAGAAGGAATACGACACCG 57.774 47.619 0.00 0.00 42.50 4.94
98 99 5.233902 CGATCAAGATAGTGCCTTCAAGAAG 59.766 44.000 2.83 2.83 38.14 2.85
99 100 5.111989 CGATCAAGATAGTGCCTTCAAGAA 58.888 41.667 0.00 0.00 0.00 2.52
100 101 4.160439 ACGATCAAGATAGTGCCTTCAAGA 59.840 41.667 0.00 0.00 0.00 3.02
101 102 4.437239 ACGATCAAGATAGTGCCTTCAAG 58.563 43.478 0.00 0.00 0.00 3.02
102 103 4.471904 ACGATCAAGATAGTGCCTTCAA 57.528 40.909 0.00 0.00 0.00 2.69
103 104 4.433615 GAACGATCAAGATAGTGCCTTCA 58.566 43.478 0.00 0.00 0.00 3.02
104 105 3.487574 CGAACGATCAAGATAGTGCCTTC 59.512 47.826 0.00 0.00 0.00 3.46
105 106 3.448686 CGAACGATCAAGATAGTGCCTT 58.551 45.455 0.00 0.00 0.00 4.35
106 107 2.799917 GCGAACGATCAAGATAGTGCCT 60.800 50.000 0.00 0.00 0.00 4.75
107 108 1.523095 GCGAACGATCAAGATAGTGCC 59.477 52.381 0.00 0.00 0.00 5.01
108 109 1.188138 CGCGAACGATCAAGATAGTGC 59.812 52.381 0.00 0.00 43.93 4.40
109 110 1.781429 CCGCGAACGATCAAGATAGTG 59.219 52.381 8.23 0.00 43.93 2.74
110 111 1.404391 ACCGCGAACGATCAAGATAGT 59.596 47.619 8.23 0.00 43.93 2.12
111 112 1.781429 CACCGCGAACGATCAAGATAG 59.219 52.381 8.23 0.00 43.93 2.08
112 113 1.133598 ACACCGCGAACGATCAAGATA 59.866 47.619 8.23 0.00 43.93 1.98
113 114 0.108804 ACACCGCGAACGATCAAGAT 60.109 50.000 8.23 0.00 43.93 2.40
114 115 0.731514 GACACCGCGAACGATCAAGA 60.732 55.000 8.23 0.00 43.93 3.02
115 116 1.683790 GGACACCGCGAACGATCAAG 61.684 60.000 8.23 0.00 43.93 3.02
116 117 1.735198 GGACACCGCGAACGATCAA 60.735 57.895 8.23 0.00 43.93 2.57
117 118 2.126228 GGACACCGCGAACGATCA 60.126 61.111 8.23 0.00 43.93 2.92
118 119 2.884207 GGGACACCGCGAACGATC 60.884 66.667 8.23 0.00 43.93 3.69
119 120 4.446413 GGGGACACCGCGAACGAT 62.446 66.667 8.23 0.00 43.93 3.73
128 129 2.124445 GCCATAACCGGGGACACC 60.124 66.667 6.32 0.00 0.00 4.16
129 130 1.153229 GAGCCATAACCGGGGACAC 60.153 63.158 6.32 0.00 0.00 3.67
130 131 2.727392 CGAGCCATAACCGGGGACA 61.727 63.158 6.32 0.00 0.00 4.02
131 132 2.108362 CGAGCCATAACCGGGGAC 59.892 66.667 6.32 0.00 0.00 4.46
132 133 2.957902 ATCCGAGCCATAACCGGGGA 62.958 60.000 6.32 0.00 43.16 4.81
133 134 2.516888 ATCCGAGCCATAACCGGGG 61.517 63.158 6.32 0.00 43.16 5.73
134 135 1.301716 CATCCGAGCCATAACCGGG 60.302 63.158 6.32 0.00 43.16 5.73
135 136 0.321671 ATCATCCGAGCCATAACCGG 59.678 55.000 0.00 0.00 44.22 5.28
136 137 1.270305 ACATCATCCGAGCCATAACCG 60.270 52.381 0.00 0.00 0.00 4.44
137 138 2.549754 CAACATCATCCGAGCCATAACC 59.450 50.000 0.00 0.00 0.00 2.85
138 139 2.549754 CCAACATCATCCGAGCCATAAC 59.450 50.000 0.00 0.00 0.00 1.89
139 140 2.437651 TCCAACATCATCCGAGCCATAA 59.562 45.455 0.00 0.00 0.00 1.90
140 141 2.037641 CTCCAACATCATCCGAGCCATA 59.962 50.000 0.00 0.00 0.00 2.74
141 142 0.839277 TCCAACATCATCCGAGCCAT 59.161 50.000 0.00 0.00 0.00 4.40
142 143 0.178767 CTCCAACATCATCCGAGCCA 59.821 55.000 0.00 0.00 0.00 4.75
143 144 0.179000 ACTCCAACATCATCCGAGCC 59.821 55.000 0.00 0.00 0.00 4.70
144 145 1.936547 GAACTCCAACATCATCCGAGC 59.063 52.381 0.00 0.00 0.00 5.03
145 146 3.452474 GAGAACTCCAACATCATCCGAG 58.548 50.000 0.00 0.00 0.00 4.63
146 147 2.159240 CGAGAACTCCAACATCATCCGA 60.159 50.000 0.00 0.00 0.00 4.55
147 148 2.196749 CGAGAACTCCAACATCATCCG 58.803 52.381 0.00 0.00 0.00 4.18
148 149 3.252974 ACGAGAACTCCAACATCATCC 57.747 47.619 0.00 0.00 0.00 3.51
149 150 3.372206 CCAACGAGAACTCCAACATCATC 59.628 47.826 0.00 0.00 0.00 2.92
150 151 3.338249 CCAACGAGAACTCCAACATCAT 58.662 45.455 0.00 0.00 0.00 2.45
151 152 2.766313 CCAACGAGAACTCCAACATCA 58.234 47.619 0.00 0.00 0.00 3.07
152 153 1.464997 GCCAACGAGAACTCCAACATC 59.535 52.381 0.00 0.00 0.00 3.06
153 154 1.072331 AGCCAACGAGAACTCCAACAT 59.928 47.619 0.00 0.00 0.00 2.71
154 155 0.468226 AGCCAACGAGAACTCCAACA 59.532 50.000 0.00 0.00 0.00 3.33
155 156 1.264288 CAAGCCAACGAGAACTCCAAC 59.736 52.381 0.00 0.00 0.00 3.77
156 157 1.593196 CAAGCCAACGAGAACTCCAA 58.407 50.000 0.00 0.00 0.00 3.53
157 158 0.250295 CCAAGCCAACGAGAACTCCA 60.250 55.000 0.00 0.00 0.00 3.86
158 159 1.578206 GCCAAGCCAACGAGAACTCC 61.578 60.000 0.00 0.00 0.00 3.85
159 160 0.884704 TGCCAAGCCAACGAGAACTC 60.885 55.000 0.00 0.00 0.00 3.01
160 161 0.250901 ATGCCAAGCCAACGAGAACT 60.251 50.000 0.00 0.00 0.00 3.01
161 162 0.598065 AATGCCAAGCCAACGAGAAC 59.402 50.000 0.00 0.00 0.00 3.01
162 163 0.597568 CAATGCCAAGCCAACGAGAA 59.402 50.000 0.00 0.00 0.00 2.87
163 164 1.865788 GCAATGCCAAGCCAACGAGA 61.866 55.000 0.00 0.00 0.00 4.04
164 165 1.444895 GCAATGCCAAGCCAACGAG 60.445 57.895 0.00 0.00 0.00 4.18
165 166 2.650196 GCAATGCCAAGCCAACGA 59.350 55.556 0.00 0.00 0.00 3.85
186 187 1.961180 CTACCAGACCCGAGCCAAGG 61.961 65.000 0.00 0.00 0.00 3.61
187 188 1.517832 CTACCAGACCCGAGCCAAG 59.482 63.158 0.00 0.00 0.00 3.61
188 189 1.987855 CCTACCAGACCCGAGCCAA 60.988 63.158 0.00 0.00 0.00 4.52
189 190 2.363795 CCTACCAGACCCGAGCCA 60.364 66.667 0.00 0.00 0.00 4.75
190 191 1.551019 AAACCTACCAGACCCGAGCC 61.551 60.000 0.00 0.00 0.00 4.70
191 192 1.188863 TAAACCTACCAGACCCGAGC 58.811 55.000 0.00 0.00 0.00 5.03
192 193 2.830321 AGTTAAACCTACCAGACCCGAG 59.170 50.000 0.00 0.00 0.00 4.63
193 194 2.564062 CAGTTAAACCTACCAGACCCGA 59.436 50.000 0.00 0.00 0.00 5.14
194 195 2.301009 ACAGTTAAACCTACCAGACCCG 59.699 50.000 0.00 0.00 0.00 5.28
195 196 3.072038 ACACAGTTAAACCTACCAGACCC 59.928 47.826 0.00 0.00 0.00 4.46
196 197 4.347360 ACACAGTTAAACCTACCAGACC 57.653 45.455 0.00 0.00 0.00 3.85
197 198 5.121105 ACAACACAGTTAAACCTACCAGAC 58.879 41.667 0.00 0.00 0.00 3.51
198 199 5.362105 ACAACACAGTTAAACCTACCAGA 57.638 39.130 0.00 0.00 0.00 3.86
199 200 6.370718 GGATACAACACAGTTAAACCTACCAG 59.629 42.308 0.00 0.00 0.00 4.00
200 201 6.043474 AGGATACAACACAGTTAAACCTACCA 59.957 38.462 0.00 0.00 41.41 3.25
201 202 6.470278 AGGATACAACACAGTTAAACCTACC 58.530 40.000 0.00 0.00 41.41 3.18
202 203 7.331193 CAGAGGATACAACACAGTTAAACCTAC 59.669 40.741 0.00 0.00 41.41 3.18
203 204 7.015877 ACAGAGGATACAACACAGTTAAACCTA 59.984 37.037 0.00 0.00 41.41 3.08
204 205 6.183361 ACAGAGGATACAACACAGTTAAACCT 60.183 38.462 0.00 0.00 41.41 3.50
205 206 5.995897 ACAGAGGATACAACACAGTTAAACC 59.004 40.000 0.00 0.00 41.41 3.27
206 207 7.148853 CGTACAGAGGATACAACACAGTTAAAC 60.149 40.741 0.00 0.00 41.41 2.01
207 208 6.864685 CGTACAGAGGATACAACACAGTTAAA 59.135 38.462 0.00 0.00 41.41 1.52
208 209 6.384224 CGTACAGAGGATACAACACAGTTAA 58.616 40.000 0.00 0.00 41.41 2.01
209 210 5.106038 CCGTACAGAGGATACAACACAGTTA 60.106 44.000 0.00 0.00 41.41 2.24
210 211 4.321750 CCGTACAGAGGATACAACACAGTT 60.322 45.833 0.00 0.00 41.41 3.16
211 212 3.192844 CCGTACAGAGGATACAACACAGT 59.807 47.826 0.00 0.00 41.41 3.55
212 213 3.428999 CCCGTACAGAGGATACAACACAG 60.429 52.174 0.00 0.00 41.41 3.66
213 214 2.494471 CCCGTACAGAGGATACAACACA 59.506 50.000 0.00 0.00 41.41 3.72
214 215 2.737679 GCCCGTACAGAGGATACAACAC 60.738 54.545 0.00 0.00 41.41 3.32
215 216 1.479323 GCCCGTACAGAGGATACAACA 59.521 52.381 0.00 0.00 41.41 3.33
216 217 1.755380 AGCCCGTACAGAGGATACAAC 59.245 52.381 0.00 0.00 41.41 3.32
217 218 1.754803 CAGCCCGTACAGAGGATACAA 59.245 52.381 0.00 0.00 41.41 2.41
218 219 1.064240 TCAGCCCGTACAGAGGATACA 60.064 52.381 0.00 0.00 41.41 2.29
219 220 1.609555 CTCAGCCCGTACAGAGGATAC 59.390 57.143 0.00 0.00 0.00 2.24
220 221 1.982660 CTCAGCCCGTACAGAGGATA 58.017 55.000 0.00 0.00 0.00 2.59
221 222 1.395826 GCTCAGCCCGTACAGAGGAT 61.396 60.000 0.00 0.00 0.00 3.24
222 223 2.052690 GCTCAGCCCGTACAGAGGA 61.053 63.158 0.00 0.00 0.00 3.71
223 224 1.680522 ATGCTCAGCCCGTACAGAGG 61.681 60.000 0.00 0.00 0.00 3.69
224 225 0.249238 GATGCTCAGCCCGTACAGAG 60.249 60.000 0.00 0.00 0.00 3.35
225 226 1.676678 GGATGCTCAGCCCGTACAGA 61.677 60.000 0.00 0.00 0.00 3.41
226 227 1.227380 GGATGCTCAGCCCGTACAG 60.227 63.158 0.00 0.00 0.00 2.74
227 228 2.900273 GGATGCTCAGCCCGTACA 59.100 61.111 0.00 0.00 0.00 2.90
233 234 1.452833 GGACAAGGGATGCTCAGCC 60.453 63.158 0.00 0.00 35.80 4.85
234 235 1.452833 GGGACAAGGGATGCTCAGC 60.453 63.158 0.00 0.00 0.00 4.26
235 236 1.225704 GGGGACAAGGGATGCTCAG 59.774 63.158 0.00 0.00 0.00 3.35
236 237 2.308722 GGGGGACAAGGGATGCTCA 61.309 63.158 0.00 0.00 0.00 4.26
237 238 2.003548 AGGGGGACAAGGGATGCTC 61.004 63.158 0.00 0.00 0.00 4.26
238 239 2.128226 AGGGGGACAAGGGATGCT 59.872 61.111 0.00 0.00 0.00 3.79
239 240 2.276740 CAGGGGGACAAGGGATGC 59.723 66.667 0.00 0.00 0.00 3.91
240 241 2.276309 GAGCAGGGGGACAAGGGATG 62.276 65.000 0.00 0.00 0.00 3.51
241 242 2.003548 GAGCAGGGGGACAAGGGAT 61.004 63.158 0.00 0.00 0.00 3.85
242 243 2.610859 GAGCAGGGGGACAAGGGA 60.611 66.667 0.00 0.00 0.00 4.20
243 244 3.732849 GGAGCAGGGGGACAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
244 245 4.101448 CGGAGCAGGGGGACAAGG 62.101 72.222 0.00 0.00 0.00 3.61
245 246 4.101448 CCGGAGCAGGGGGACAAG 62.101 72.222 0.00 0.00 0.00 3.16
256 257 2.513897 GTACATGGTGCCCGGAGC 60.514 66.667 0.73 5.29 44.14 4.70
257 258 1.449601 GTGTACATGGTGCCCGGAG 60.450 63.158 0.73 0.00 0.00 4.63
258 259 2.217745 TGTGTACATGGTGCCCGGA 61.218 57.895 0.73 0.00 0.00 5.14
259 260 2.038269 GTGTGTACATGGTGCCCGG 61.038 63.158 0.00 0.00 0.00 5.73
260 261 2.038269 GGTGTGTACATGGTGCCCG 61.038 63.158 0.00 0.00 0.00 6.13
261 262 0.960364 CAGGTGTGTACATGGTGCCC 60.960 60.000 0.00 0.00 35.08 5.36
262 263 1.586154 GCAGGTGTGTACATGGTGCC 61.586 60.000 0.00 0.00 38.93 5.01
263 264 1.586154 GGCAGGTGTGTACATGGTGC 61.586 60.000 0.00 6.38 38.93 5.01
264 265 0.036732 AGGCAGGTGTGTACATGGTG 59.963 55.000 0.00 0.00 38.93 4.17
265 266 0.036732 CAGGCAGGTGTGTACATGGT 59.963 55.000 0.00 0.00 38.93 3.55
266 267 1.308069 GCAGGCAGGTGTGTACATGG 61.308 60.000 0.00 0.00 38.93 3.66
267 268 1.638388 CGCAGGCAGGTGTGTACATG 61.638 60.000 0.00 0.00 41.33 3.21
268 269 1.375908 CGCAGGCAGGTGTGTACAT 60.376 57.895 0.00 0.00 0.00 2.29
269 270 2.030412 CGCAGGCAGGTGTGTACA 59.970 61.111 0.00 0.00 0.00 2.90
270 271 1.566018 GAACGCAGGCAGGTGTGTAC 61.566 60.000 0.22 0.00 40.30 2.90
271 272 1.301401 GAACGCAGGCAGGTGTGTA 60.301 57.895 0.22 0.00 40.30 2.90
272 273 2.591715 GAACGCAGGCAGGTGTGT 60.592 61.111 0.00 0.00 43.03 3.72
273 274 3.716006 CGAACGCAGGCAGGTGTG 61.716 66.667 0.00 0.00 0.00 3.82
274 275 4.235762 ACGAACGCAGGCAGGTGT 62.236 61.111 0.00 0.00 0.00 4.16
275 276 3.716006 CACGAACGCAGGCAGGTG 61.716 66.667 0.00 0.00 0.00 4.00
276 277 4.235762 ACACGAACGCAGGCAGGT 62.236 61.111 0.00 0.00 0.00 4.00
277 278 3.414700 GACACGAACGCAGGCAGG 61.415 66.667 0.00 0.00 0.00 4.85
278 279 2.029288 ATGACACGAACGCAGGCAG 61.029 57.895 0.00 0.00 0.00 4.85
279 280 2.030412 ATGACACGAACGCAGGCA 59.970 55.556 0.00 0.00 0.00 4.75
280 281 2.317609 ACATGACACGAACGCAGGC 61.318 57.895 0.00 0.00 0.00 4.85
281 282 1.221466 ACACATGACACGAACGCAGG 61.221 55.000 0.00 0.00 0.00 4.85
282 283 0.581529 AACACATGACACGAACGCAG 59.418 50.000 0.00 0.00 0.00 5.18
283 284 0.303191 CAACACATGACACGAACGCA 59.697 50.000 0.00 0.00 0.00 5.24
284 285 0.303493 ACAACACATGACACGAACGC 59.697 50.000 0.00 0.00 0.00 4.84
285 286 3.181534 GGATACAACACATGACACGAACG 60.182 47.826 0.00 0.00 0.00 3.95
286 287 3.124636 GGGATACAACACATGACACGAAC 59.875 47.826 0.00 0.00 39.74 3.95
287 288 3.007506 AGGGATACAACACATGACACGAA 59.992 43.478 0.00 0.00 39.74 3.85
288 289 2.565391 AGGGATACAACACATGACACGA 59.435 45.455 0.00 0.00 39.74 4.35
289 290 2.672874 CAGGGATACAACACATGACACG 59.327 50.000 0.00 0.00 39.74 4.49
290 291 3.436704 CACAGGGATACAACACATGACAC 59.563 47.826 0.00 0.00 39.74 3.67
291 292 3.072330 ACACAGGGATACAACACATGACA 59.928 43.478 0.00 0.00 39.74 3.58
292 293 3.674997 ACACAGGGATACAACACATGAC 58.325 45.455 0.00 0.00 39.74 3.06
293 294 4.530553 AGTACACAGGGATACAACACATGA 59.469 41.667 0.00 0.00 39.74 3.07
294 295 4.832248 AGTACACAGGGATACAACACATG 58.168 43.478 0.00 0.00 39.74 3.21
295 296 4.530553 TGAGTACACAGGGATACAACACAT 59.469 41.667 0.00 0.00 39.74 3.21
296 297 3.898741 TGAGTACACAGGGATACAACACA 59.101 43.478 0.00 0.00 39.74 3.72
297 298 4.243270 GTGAGTACACAGGGATACAACAC 58.757 47.826 0.00 0.00 45.32 3.32
298 299 4.530710 GTGAGTACACAGGGATACAACA 57.469 45.455 0.00 0.00 45.32 3.33
310 311 3.158676 AGAAGGAGTGGAGTGAGTACAC 58.841 50.000 0.00 0.00 46.24 2.90
311 312 3.527507 AGAAGGAGTGGAGTGAGTACA 57.472 47.619 0.00 0.00 0.00 2.90
312 313 5.194432 TGATAGAAGGAGTGGAGTGAGTAC 58.806 45.833 0.00 0.00 0.00 2.73
313 314 5.452341 TGATAGAAGGAGTGGAGTGAGTA 57.548 43.478 0.00 0.00 0.00 2.59
314 315 4.323569 TGATAGAAGGAGTGGAGTGAGT 57.676 45.455 0.00 0.00 0.00 3.41
315 316 5.362143 TCATTGATAGAAGGAGTGGAGTGAG 59.638 44.000 0.00 0.00 0.00 3.51
316 317 5.272402 TCATTGATAGAAGGAGTGGAGTGA 58.728 41.667 0.00 0.00 0.00 3.41
317 318 5.604758 TCATTGATAGAAGGAGTGGAGTG 57.395 43.478 0.00 0.00 0.00 3.51
318 319 6.627087 TTTCATTGATAGAAGGAGTGGAGT 57.373 37.500 0.00 0.00 0.00 3.85
319 320 7.278135 TCATTTCATTGATAGAAGGAGTGGAG 58.722 38.462 0.00 0.00 0.00 3.86
320 321 7.199167 TCATTTCATTGATAGAAGGAGTGGA 57.801 36.000 0.00 0.00 0.00 4.02
321 322 8.997323 GTATCATTTCATTGATAGAAGGAGTGG 58.003 37.037 0.00 0.00 38.83 4.00
322 323 8.706936 CGTATCATTTCATTGATAGAAGGAGTG 58.293 37.037 0.00 0.00 38.83 3.51
323 324 7.386299 GCGTATCATTTCATTGATAGAAGGAGT 59.614 37.037 0.00 0.00 38.83 3.85
324 325 7.386025 TGCGTATCATTTCATTGATAGAAGGAG 59.614 37.037 0.00 0.00 38.83 3.69
325 326 7.216494 TGCGTATCATTTCATTGATAGAAGGA 58.784 34.615 0.00 0.00 38.83 3.36
326 327 7.425577 TGCGTATCATTTCATTGATAGAAGG 57.574 36.000 0.00 0.00 38.83 3.46
327 328 7.533222 GCTTGCGTATCATTTCATTGATAGAAG 59.467 37.037 0.00 0.00 38.83 2.85
328 329 7.227314 AGCTTGCGTATCATTTCATTGATAGAA 59.773 33.333 0.00 0.00 38.83 2.10
329 330 6.707608 AGCTTGCGTATCATTTCATTGATAGA 59.292 34.615 0.00 0.00 38.83 1.98
330 331 6.895898 AGCTTGCGTATCATTTCATTGATAG 58.104 36.000 0.00 0.00 38.83 2.08
331 332 6.866010 AGCTTGCGTATCATTTCATTGATA 57.134 33.333 0.00 0.00 37.51 2.15
332 333 5.762825 AGCTTGCGTATCATTTCATTGAT 57.237 34.783 0.00 0.00 39.60 2.57
333 334 5.565592 AAGCTTGCGTATCATTTCATTGA 57.434 34.783 0.00 0.00 0.00 2.57
334 335 6.016423 CAAAGCTTGCGTATCATTTCATTG 57.984 37.500 0.00 0.00 0.00 2.82
374 375 8.575649 TGCATCATGCTCTTATCATCATTATT 57.424 30.769 11.84 0.00 45.31 1.40
379 380 6.059484 TCTTTGCATCATGCTCTTATCATCA 58.941 36.000 11.84 0.00 45.31 3.07
385 386 4.761227 TGTGTTCTTTGCATCATGCTCTTA 59.239 37.500 11.84 0.00 45.31 2.10
390 391 1.980844 CGTGTGTTCTTTGCATCATGC 59.019 47.619 1.35 1.35 45.29 4.06
404 405 2.260869 GGGCTCATGTTGCGTGTGT 61.261 57.895 0.00 0.00 0.00 3.72
452 453 3.011821 AGGTCTCCTCATAGAACCACTCA 59.988 47.826 0.00 0.00 33.38 3.41
473 474 4.948608 ATCTCATATCGTGTAGCCGTAG 57.051 45.455 0.00 0.00 0.00 3.51
554 555 8.998814 TCACTTATTTTAGGATGGATTGGAGTA 58.001 33.333 0.00 0.00 0.00 2.59
556 557 7.995488 AGTCACTTATTTTAGGATGGATTGGAG 59.005 37.037 0.00 0.00 0.00 3.86
557 558 7.872138 AGTCACTTATTTTAGGATGGATTGGA 58.128 34.615 0.00 0.00 0.00 3.53
558 559 7.775093 TGAGTCACTTATTTTAGGATGGATTGG 59.225 37.037 0.00 0.00 0.00 3.16
559 560 8.737168 TGAGTCACTTATTTTAGGATGGATTG 57.263 34.615 0.00 0.00 0.00 2.67
560 561 9.178758 GTTGAGTCACTTATTTTAGGATGGATT 57.821 33.333 0.00 0.00 0.00 3.01
561 562 8.552296 AGTTGAGTCACTTATTTTAGGATGGAT 58.448 33.333 0.00 0.00 0.00 3.41
562 563 7.918076 AGTTGAGTCACTTATTTTAGGATGGA 58.082 34.615 0.00 0.00 0.00 3.41
563 564 8.567285 AAGTTGAGTCACTTATTTTAGGATGG 57.433 34.615 0.00 0.00 35.10 3.51
564 565 9.831737 CAAAGTTGAGTCACTTATTTTAGGATG 57.168 33.333 0.00 0.00 35.87 3.51
565 566 9.574516 ACAAAGTTGAGTCACTTATTTTAGGAT 57.425 29.630 0.00 0.00 35.87 3.24
566 567 8.974060 ACAAAGTTGAGTCACTTATTTTAGGA 57.026 30.769 0.00 0.00 35.87 2.94
576 577 9.174166 ACAAGTTTAATACAAAGTTGAGTCACT 57.826 29.630 19.06 0.00 40.96 3.41
579 580 9.577003 CGTACAAGTTTAATACAAAGTTGAGTC 57.423 33.333 19.06 10.34 40.96 3.36
580 581 8.553696 CCGTACAAGTTTAATACAAAGTTGAGT 58.446 33.333 19.06 5.44 40.96 3.41
581 582 8.767085 TCCGTACAAGTTTAATACAAAGTTGAG 58.233 33.333 19.06 11.68 40.96 3.02
582 583 8.659925 TCCGTACAAGTTTAATACAAAGTTGA 57.340 30.769 19.06 5.38 40.96 3.18
583 584 8.013378 CCTCCGTACAAGTTTAATACAAAGTTG 58.987 37.037 13.20 13.20 42.95 3.16
584 585 7.173735 CCCTCCGTACAAGTTTAATACAAAGTT 59.826 37.037 0.00 0.00 0.00 2.66
585 586 6.652062 CCCTCCGTACAAGTTTAATACAAAGT 59.348 38.462 0.00 0.00 0.00 2.66
586 587 6.875195 TCCCTCCGTACAAGTTTAATACAAAG 59.125 38.462 0.00 0.00 0.00 2.77
587 588 6.767456 TCCCTCCGTACAAGTTTAATACAAA 58.233 36.000 0.00 0.00 0.00 2.83
588 589 6.014327 ACTCCCTCCGTACAAGTTTAATACAA 60.014 38.462 0.00 0.00 0.00 2.41
589 590 5.481473 ACTCCCTCCGTACAAGTTTAATACA 59.519 40.000 0.00 0.00 0.00 2.29
590 591 5.970592 ACTCCCTCCGTACAAGTTTAATAC 58.029 41.667 0.00 0.00 0.00 1.89
591 592 7.902920 ATACTCCCTCCGTACAAGTTTAATA 57.097 36.000 0.00 0.00 0.00 0.98
592 593 6.803366 ATACTCCCTCCGTACAAGTTTAAT 57.197 37.500 0.00 0.00 0.00 1.40
593 594 7.178274 TGTTATACTCCCTCCGTACAAGTTTAA 59.822 37.037 0.00 0.00 0.00 1.52
594 595 6.663093 TGTTATACTCCCTCCGTACAAGTTTA 59.337 38.462 0.00 0.00 0.00 2.01
595 596 5.481473 TGTTATACTCCCTCCGTACAAGTTT 59.519 40.000 0.00 0.00 0.00 2.66
596 597 5.018809 TGTTATACTCCCTCCGTACAAGTT 58.981 41.667 0.00 0.00 0.00 2.66
597 598 4.603131 TGTTATACTCCCTCCGTACAAGT 58.397 43.478 0.00 0.00 0.00 3.16
598 599 5.359009 TCTTGTTATACTCCCTCCGTACAAG 59.641 44.000 0.00 0.00 34.10 3.16
599 600 5.263599 TCTTGTTATACTCCCTCCGTACAA 58.736 41.667 0.00 0.00 0.00 2.41
600 601 4.858850 TCTTGTTATACTCCCTCCGTACA 58.141 43.478 0.00 0.00 0.00 2.90
601 602 5.591877 TCTTCTTGTTATACTCCCTCCGTAC 59.408 44.000 0.00 0.00 0.00 3.67
602 603 5.759059 TCTTCTTGTTATACTCCCTCCGTA 58.241 41.667 0.00 0.00 0.00 4.02
603 604 4.607239 TCTTCTTGTTATACTCCCTCCGT 58.393 43.478 0.00 0.00 0.00 4.69
604 605 4.645588 ACTCTTCTTGTTATACTCCCTCCG 59.354 45.833 0.00 0.00 0.00 4.63
605 606 5.221087 CGACTCTTCTTGTTATACTCCCTCC 60.221 48.000 0.00 0.00 0.00 4.30
606 607 5.357596 ACGACTCTTCTTGTTATACTCCCTC 59.642 44.000 0.00 0.00 0.00 4.30
607 608 5.125739 CACGACTCTTCTTGTTATACTCCCT 59.874 44.000 0.00 0.00 0.00 4.20
608 609 5.105837 ACACGACTCTTCTTGTTATACTCCC 60.106 44.000 0.00 0.00 30.17 4.30
609 610 5.952033 ACACGACTCTTCTTGTTATACTCC 58.048 41.667 0.00 0.00 30.17 3.85
610 611 9.224058 GATTACACGACTCTTCTTGTTATACTC 57.776 37.037 0.00 0.00 35.85 2.59
611 612 8.737175 TGATTACACGACTCTTCTTGTTATACT 58.263 33.333 0.00 0.00 35.85 2.12
612 613 8.906636 TGATTACACGACTCTTCTTGTTATAC 57.093 34.615 0.00 0.00 35.85 1.47
613 614 9.569167 CTTGATTACACGACTCTTCTTGTTATA 57.431 33.333 0.00 0.00 35.85 0.98
614 615 7.545965 CCTTGATTACACGACTCTTCTTGTTAT 59.454 37.037 0.00 0.00 35.85 1.89
615 616 6.866770 CCTTGATTACACGACTCTTCTTGTTA 59.133 38.462 0.00 0.00 35.85 2.41
618 619 5.230942 ACCTTGATTACACGACTCTTCTTG 58.769 41.667 0.00 0.00 0.00 3.02
627 628 3.034721 GTGGTGACCTTGATTACACGA 57.965 47.619 2.11 0.00 34.59 4.35
638 639 1.604604 CATTGAAACCGTGGTGACCT 58.395 50.000 2.11 0.00 0.00 3.85
641 642 3.811031 ACCATTGAAACCGTGGTGA 57.189 47.368 0.00 0.00 44.21 4.02
658 659 1.152546 ACAGGGCTTTTGGGACCAC 60.153 57.895 0.00 0.00 36.69 4.16
674 676 1.444917 ATCTATGCTCGTCGCCGACA 61.445 55.000 18.40 3.72 38.40 4.35
727 729 7.731882 TCAAGACCGTGTTATGTCATAAAAA 57.268 32.000 6.85 0.00 33.89 1.94
812 922 9.682465 ATTTTAACTAGTTCAACCTCCTATTCC 57.318 33.333 12.39 0.00 0.00 3.01
868 979 3.421844 AGGGTGGCTTTTAGAACATGTC 58.578 45.455 0.00 0.00 0.00 3.06
869 980 3.525800 AGGGTGGCTTTTAGAACATGT 57.474 42.857 0.00 0.00 0.00 3.21
870 981 3.826157 TCAAGGGTGGCTTTTAGAACATG 59.174 43.478 0.00 0.00 0.00 3.21
872 983 3.586470 TCAAGGGTGGCTTTTAGAACA 57.414 42.857 0.00 0.00 0.00 3.18
873 984 4.929819 TTTCAAGGGTGGCTTTTAGAAC 57.070 40.909 0.00 0.00 0.00 3.01
875 986 4.735369 TGATTTCAAGGGTGGCTTTTAGA 58.265 39.130 0.00 0.00 0.00 2.10
876 987 5.185635 TCATGATTTCAAGGGTGGCTTTTAG 59.814 40.000 0.00 0.00 0.00 1.85
963 1077 2.539081 GGAGGTGGAGGGCTTTGGT 61.539 63.158 0.00 0.00 0.00 3.67
968 1082 1.774217 TTGTTGGAGGTGGAGGGCT 60.774 57.895 0.00 0.00 0.00 5.19
969 1083 1.603739 GTTGTTGGAGGTGGAGGGC 60.604 63.158 0.00 0.00 0.00 5.19
970 1084 1.074951 GGTTGTTGGAGGTGGAGGG 59.925 63.158 0.00 0.00 0.00 4.30
971 1085 0.250901 CTGGTTGTTGGAGGTGGAGG 60.251 60.000 0.00 0.00 0.00 4.30
972 1086 0.764890 TCTGGTTGTTGGAGGTGGAG 59.235 55.000 0.00 0.00 0.00 3.86
973 1087 0.764890 CTCTGGTTGTTGGAGGTGGA 59.235 55.000 0.00 0.00 0.00 4.02
974 1088 0.890996 GCTCTGGTTGTTGGAGGTGG 60.891 60.000 0.00 0.00 0.00 4.61
975 1089 1.230635 CGCTCTGGTTGTTGGAGGTG 61.231 60.000 0.00 0.00 0.00 4.00
976 1090 1.071471 CGCTCTGGTTGTTGGAGGT 59.929 57.895 0.00 0.00 0.00 3.85
993 1107 1.978712 CTGGCTTGCTCATGAGTGCG 61.979 60.000 23.38 12.60 37.07 5.34
998 1112 2.437180 CGCCTGGCTTGCTCATGA 60.437 61.111 17.92 0.00 0.00 3.07
999 1113 3.515286 CCGCCTGGCTTGCTCATG 61.515 66.667 17.92 0.00 0.00 3.07
1000 1114 4.039092 ACCGCCTGGCTTGCTCAT 62.039 61.111 17.92 0.00 39.70 2.90
1081 1195 2.445654 GAGGAGGAGCAGGAGGGG 60.446 72.222 0.00 0.00 0.00 4.79
1294 1425 0.324614 TGGAGCGATCCAAGAGCAAA 59.675 50.000 22.36 0.00 36.74 3.68
1296 1427 1.069204 GTATGGAGCGATCCAAGAGCA 59.931 52.381 28.45 6.85 43.83 4.26
1304 1435 0.035458 CCCCTTGGTATGGAGCGATC 59.965 60.000 0.00 0.00 0.00 3.69
1351 1482 9.586435 TCAAGAAAGAAAGAAAAAGTCCATTTC 57.414 29.630 0.00 0.00 37.11 2.17
1390 1522 2.792947 GGGACGATCCAGCCGCTAA 61.793 63.158 0.00 0.00 38.64 3.09
1406 1538 3.055385 TCACAGGAAGAAATAACCTCGGG 60.055 47.826 0.00 0.00 31.06 5.14
1502 1634 9.574516 GTGATTTAACCCCAGAATACTCAATAT 57.425 33.333 0.00 0.00 0.00 1.28
1503 1635 8.553153 TGTGATTTAACCCCAGAATACTCAATA 58.447 33.333 0.00 0.00 0.00 1.90
1504 1636 7.410174 TGTGATTTAACCCCAGAATACTCAAT 58.590 34.615 0.00 0.00 0.00 2.57
1505 1637 6.785076 TGTGATTTAACCCCAGAATACTCAA 58.215 36.000 0.00 0.00 0.00 3.02
1506 1638 6.381498 TGTGATTTAACCCCAGAATACTCA 57.619 37.500 0.00 0.00 0.00 3.41
1507 1639 5.823045 CCTGTGATTTAACCCCAGAATACTC 59.177 44.000 0.00 0.00 0.00 2.59
1508 1640 5.491078 TCCTGTGATTTAACCCCAGAATACT 59.509 40.000 0.00 0.00 0.00 2.12
1509 1641 5.751586 TCCTGTGATTTAACCCCAGAATAC 58.248 41.667 0.00 0.00 0.00 1.89
1510 1642 6.590656 ATCCTGTGATTTAACCCCAGAATA 57.409 37.500 0.00 0.00 0.00 1.75
1511 1643 4.946160 TCCTGTGATTTAACCCCAGAAT 57.054 40.909 0.00 0.00 0.00 2.40
1512 1644 4.625324 CGATCCTGTGATTTAACCCCAGAA 60.625 45.833 0.00 0.00 0.00 3.02
1513 1645 3.118408 CGATCCTGTGATTTAACCCCAGA 60.118 47.826 0.00 0.00 0.00 3.86
1514 1646 3.118408 TCGATCCTGTGATTTAACCCCAG 60.118 47.826 0.00 0.00 0.00 4.45
1551 1684 7.308782 AGTTCAGAGCTAAATTAATTCACCG 57.691 36.000 0.10 0.00 0.00 4.94
1587 1720 8.309656 CAGAGCTGATCTATTGTATGGTGATTA 58.690 37.037 0.00 0.00 36.10 1.75
1589 1722 6.496218 TCAGAGCTGATCTATTGTATGGTGAT 59.504 38.462 0.00 0.00 36.10 3.06
1625 1772 9.918630 TCTAATAAGACAACCACAGTTTAGTAC 57.081 33.333 0.00 0.00 32.45 2.73
1627 1774 8.095169 CCTCTAATAAGACAACCACAGTTTAGT 58.905 37.037 0.00 0.00 32.45 2.24
1634 1781 5.720041 AGTAGCCTCTAATAAGACAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
1639 1786 6.668283 AGGACAAGTAGCCTCTAATAAGACAA 59.332 38.462 0.00 0.00 0.00 3.18
1652 1799 2.763448 AGACATCTGAGGACAAGTAGCC 59.237 50.000 0.00 0.00 0.00 3.93
1653 1800 3.488384 CGAGACATCTGAGGACAAGTAGC 60.488 52.174 0.00 0.00 0.00 3.58
1657 1805 3.584406 AACGAGACATCTGAGGACAAG 57.416 47.619 0.00 0.00 0.00 3.16
1674 1822 4.685169 ATGTCCAGCAAATTGTCTAACG 57.315 40.909 0.00 0.00 0.00 3.18
1678 1826 8.757982 ATTAAGATATGTCCAGCAAATTGTCT 57.242 30.769 0.00 0.00 0.00 3.41
1708 1856 8.562892 CCATCAAAATACACTATCATCCAAGAC 58.437 37.037 0.00 0.00 0.00 3.01
1745 1893 5.806286 ACTCAAATAGACACACACAAAACG 58.194 37.500 0.00 0.00 0.00 3.60
1751 1899 8.913656 GTCTAAAGTACTCAAATAGACACACAC 58.086 37.037 21.29 5.55 41.21 3.82
1762 1910 6.147581 CGCACAGTAGTCTAAAGTACTCAAA 58.852 40.000 0.00 0.00 39.21 2.69
1770 1918 3.914966 CACAGACGCACAGTAGTCTAAAG 59.085 47.826 9.74 2.89 44.98 1.85
1773 1921 1.199327 GCACAGACGCACAGTAGTCTA 59.801 52.381 9.74 0.00 44.98 2.59
1842 1990 6.410942 TCCATCATCTGTACTTGTCTATGG 57.589 41.667 0.00 0.00 34.07 2.74
1847 1995 3.553511 CGCTTCCATCATCTGTACTTGTC 59.446 47.826 0.00 0.00 0.00 3.18
1876 2024 3.253230 GCCAATTCAACATAACCTGCAC 58.747 45.455 0.00 0.00 0.00 4.57
1944 2092 3.304659 CCTGTGTGCAAGTCCAAACATAC 60.305 47.826 0.00 0.00 32.79 2.39
1954 2102 1.696063 AAATGAGCCTGTGTGCAAGT 58.304 45.000 0.00 0.00 0.00 3.16
1958 2106 1.826385 AGGTAAATGAGCCTGTGTGC 58.174 50.000 0.00 0.00 33.13 4.57
2018 2172 0.392461 TATCGGCACCAAGGCAAGAC 60.392 55.000 0.00 0.00 44.47 3.01
2046 2201 0.038526 AACACTGCGGAACTAGACGG 60.039 55.000 0.00 0.00 0.00 4.79
2142 2297 5.338365 CAAAGCTATGAATGAGGACTTTGC 58.662 41.667 0.00 0.00 36.99 3.68
2213 2370 7.855904 GTGCACCTGTAAAACATATTATAGCAC 59.144 37.037 5.22 0.00 0.00 4.40
2325 2482 2.930040 GAGGATGTGTATGTGTTGGACG 59.070 50.000 0.00 0.00 0.00 4.79
2596 2753 7.633772 GCATAAGAGAGATCACCAGGAAGTAAA 60.634 40.741 0.00 0.00 0.00 2.01
2605 2762 5.883685 AATCAGCATAAGAGAGATCACCA 57.116 39.130 0.00 0.00 0.00 4.17
2648 2805 0.923358 TCCACCAACTCACCAAAGGT 59.077 50.000 0.00 0.00 35.62 3.50
3003 3161 7.225931 CACTCTACCTTTCTAGCAGAGTACTAG 59.774 44.444 0.00 0.00 38.87 2.57
3078 3246 8.458843 CCGACCAAAAATTAACTCATATCAGTT 58.541 33.333 0.00 0.00 39.94 3.16
3082 3250 7.758495 ACACCGACCAAAAATTAACTCATATC 58.242 34.615 0.00 0.00 0.00 1.63
3083 3251 7.696992 ACACCGACCAAAAATTAACTCATAT 57.303 32.000 0.00 0.00 0.00 1.78
3084 3252 8.795842 ATACACCGACCAAAAATTAACTCATA 57.204 30.769 0.00 0.00 0.00 2.15
3085 3253 7.696992 ATACACCGACCAAAAATTAACTCAT 57.303 32.000 0.00 0.00 0.00 2.90
3086 3254 7.446013 AGAATACACCGACCAAAAATTAACTCA 59.554 33.333 0.00 0.00 0.00 3.41
3098 3266 3.992943 AATGGAAGAATACACCGACCA 57.007 42.857 0.00 0.00 0.00 4.02
3101 3269 9.893634 TTAAGATAAAATGGAAGAATACACCGA 57.106 29.630 0.00 0.00 0.00 4.69
3130 3298 4.342352 ACTTTTAAGCTAAGCACATCGC 57.658 40.909 0.00 0.00 42.91 4.58
3453 3630 5.697633 TGGTCATCTGAAACCTTTACGTAAC 59.302 40.000 7.70 0.00 36.47 2.50
3475 3652 0.387622 CCTGCACAAACAGCGAATGG 60.388 55.000 0.00 0.00 36.29 3.16
3511 3689 1.608590 GCACCACATGGATTAATCCCG 59.391 52.381 27.97 21.54 46.59 5.14
3515 3693 4.343231 TGAACAGCACCACATGGATTAAT 58.657 39.130 4.53 0.00 38.94 1.40
3607 3788 2.357009 AGCGATTTGGATTCAGATGCAC 59.643 45.455 0.00 0.00 32.96 4.57
3727 3912 3.109619 GGAGTTGACGATCTTTAGCTCG 58.890 50.000 0.00 1.81 39.31 5.03
3733 3918 1.270094 TGCGTGGAGTTGACGATCTTT 60.270 47.619 0.00 0.00 39.21 2.52
3784 3969 0.318441 CTGTTCTCACCGGCTCTTCA 59.682 55.000 0.00 0.00 0.00 3.02
3811 3996 0.531532 CAGCCAGCGAGGTTATCCAG 60.532 60.000 0.00 0.00 40.61 3.86
3928 4116 4.142138 ACAGTACTACTACATGGCAAGCTC 60.142 45.833 0.00 0.00 0.00 4.09
3980 4170 4.453819 GCTTATCAGGCTATGGTTTAGCAG 59.546 45.833 6.91 0.00 42.06 4.24
4022 4212 5.630121 TGGAGTACATGTTCTCATTGGTTT 58.370 37.500 27.36 0.00 32.93 3.27
4059 4249 7.438160 TCATATCATACTGAGCGGTTAAAACAG 59.562 37.037 0.00 0.00 35.14 3.16
4090 4280 6.206243 AGTCCAGATGTTGTTTTCTGAATCAG 59.794 38.462 3.38 3.38 41.53 2.90
4138 5780 7.269477 ACTGCAAGCCATAATAATTTCTCTC 57.731 36.000 0.00 0.00 37.60 3.20
4149 5791 3.054139 AGGATGAGAACTGCAAGCCATAA 60.054 43.478 0.00 0.00 37.60 1.90
4155 5812 2.156917 TGCAAGGATGAGAACTGCAAG 58.843 47.619 0.00 0.00 42.29 4.01
4158 5815 0.450983 GCTGCAAGGATGAGAACTGC 59.549 55.000 0.00 0.00 0.00 4.40
4215 5872 0.687354 AGGCAGAGTTGGATCGTGTT 59.313 50.000 0.00 0.00 0.00 3.32
4230 5887 3.003173 CTTGGGGAGGACGAGGCA 61.003 66.667 0.00 0.00 0.00 4.75
4232 5889 2.685380 AGCTTGGGGAGGACGAGG 60.685 66.667 0.00 0.00 0.00 4.63
4245 5902 1.448540 CGTCGCCATGAAGGAGCTT 60.449 57.895 0.00 0.00 41.22 3.74
4332 5989 1.067295 TGAAGGTGGAAGCAGATGGT 58.933 50.000 0.00 0.00 36.26 3.55
4334 5991 1.081892 CGTGAAGGTGGAAGCAGATG 58.918 55.000 0.00 0.00 36.26 2.90
4437 6094 4.202070 GCTTCAGATCACCAGGTACTAGTC 60.202 50.000 0.00 0.00 36.02 2.59
4450 6107 0.457443 ATCGACGCAGCTTCAGATCA 59.543 50.000 0.00 0.00 0.00 2.92
4451 6108 0.851495 CATCGACGCAGCTTCAGATC 59.149 55.000 0.00 0.00 0.00 2.75
4452 6109 0.529337 CCATCGACGCAGCTTCAGAT 60.529 55.000 0.00 0.80 0.00 2.90
4579 6236 1.334869 GACACAGAACAACAAGCCCAG 59.665 52.381 0.00 0.00 0.00 4.45
4649 6306 0.179000 GATCAGGTGGCCGTCAAGAT 59.821 55.000 0.00 0.00 0.00 2.40
4662 6319 2.802667 CGCGAACGCCAAGATCAGG 61.803 63.158 13.40 0.00 37.98 3.86
4809 6469 4.900684 TCACAACGAATATTGGACTTGGA 58.099 39.130 4.29 0.00 33.63 3.53
4820 6480 2.832129 AGCTTCCTCCTCACAACGAATA 59.168 45.455 0.00 0.00 0.00 1.75
4827 6487 2.947532 CGCCAGCTTCCTCCTCACA 61.948 63.158 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.