Multiple sequence alignment - TraesCS6B01G142600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G142600 chr6B 100.000 5879 0 0 1 5879 142449008 142454886 0.000000e+00 10857.0
1 TraesCS6B01G142600 chr6B 97.561 246 6 0 892 1137 142440392 142440637 7.040000e-114 422.0
2 TraesCS6B01G142600 chr6B 95.000 160 8 0 988 1147 142439136 142439295 9.780000e-63 252.0
3 TraesCS6B01G142600 chr6B 86.441 59 5 1 5577 5635 343006628 343006573 1.770000e-05 62.1
4 TraesCS6B01G142600 chr6A 95.821 4212 140 11 967 5170 84976623 84980806 0.000000e+00 6770.0
5 TraesCS6B01G142600 chr6A 90.989 455 31 5 5419 5872 84980803 84981248 6.520000e-169 604.0
6 TraesCS6B01G142600 chr6A 94.444 54 3 0 5577 5630 208119059 208119006 3.780000e-12 84.2
7 TraesCS6B01G142600 chr6D 97.272 3995 95 7 963 4957 67507061 67511041 0.000000e+00 6761.0
8 TraesCS6B01G142600 chr6D 93.978 930 43 7 4944 5872 67511100 67512017 0.000000e+00 1395.0
9 TraesCS6B01G142600 chr6D 93.197 294 15 3 4 294 291637779 291637488 1.510000e-115 427.0
10 TraesCS6B01G142600 chr6D 90.714 140 10 3 295 434 291637288 291637152 3.620000e-42 183.0
11 TraesCS6B01G142600 chr6D 83.838 99 9 5 5577 5669 218422917 218423014 2.920000e-13 87.9
12 TraesCS6B01G142600 chr6D 90.909 44 4 0 5577 5620 154595821 154595864 6.360000e-05 60.2
13 TraesCS6B01G142600 chr3B 95.254 295 12 2 1 295 145893400 145893692 3.210000e-127 466.0
14 TraesCS6B01G142600 chr3B 91.250 240 20 1 565 803 145894511 145894750 5.680000e-85 326.0
15 TraesCS6B01G142600 chr3B 94.737 76 3 1 295 369 145894075 145894150 3.720000e-22 117.0
16 TraesCS6B01G142600 chr1B 94.576 295 13 2 1 295 567371518 567371809 2.500000e-123 453.0
17 TraesCS6B01G142600 chr1B 89.960 249 18 5 565 809 567372697 567372942 1.230000e-81 315.0
18 TraesCS6B01G142600 chr1B 94.286 70 1 1 806 872 133076598 133076529 2.900000e-18 104.0
19 TraesCS6B01G142600 chr2B 94.237 295 15 2 1 295 157281441 157281733 3.230000e-122 449.0
20 TraesCS6B01G142600 chr2B 90.119 253 14 6 565 809 157282393 157282642 9.510000e-83 318.0
21 TraesCS6B01G142600 chr2B 96.000 75 3 0 295 369 157281974 157282048 8.000000e-24 122.0
22 TraesCS6B01G142600 chr2D 93.960 298 12 6 1 294 166162053 166161758 4.180000e-121 446.0
23 TraesCS6B01G142600 chr7D 93.624 298 13 6 1 294 488081894 488082189 1.940000e-119 440.0
24 TraesCS6B01G142600 chr7D 93.559 295 14 4 1 292 162133173 162132881 9.050000e-118 435.0
25 TraesCS6B01G142600 chr7D 86.022 93 5 3 804 894 530042663 530042577 6.270000e-15 93.5
26 TraesCS6B01G142600 chr7A 92.929 297 17 3 1 294 136352118 136352413 4.210000e-116 429.0
27 TraesCS6B01G142600 chr7A 91.429 140 9 3 295 434 136352726 136352862 7.780000e-44 189.0
28 TraesCS6B01G142600 chr5D 92.808 292 18 3 4 294 540147993 540147704 2.530000e-113 420.0
29 TraesCS6B01G142600 chr5D 90.714 140 10 3 295 434 540147497 540147361 3.620000e-42 183.0
30 TraesCS6B01G142600 chr2A 85.641 195 14 6 295 475 737079835 737079641 6.010000e-45 193.0
31 TraesCS6B01G142600 chr2A 98.113 53 1 0 805 857 562358409 562358357 6.270000e-15 93.5
32 TraesCS6B01G142600 chr7B 92.105 76 3 3 806 878 660548524 660548599 2.900000e-18 104.0
33 TraesCS6B01G142600 chr7B 88.732 71 5 3 807 874 700824814 700824884 3.780000e-12 84.2
34 TraesCS6B01G142600 chr3A 81.955 133 15 3 732 857 459111469 459111599 2.900000e-18 104.0
35 TraesCS6B01G142600 chr3A 87.324 71 7 2 289 359 184625341 184625409 4.880000e-11 80.5
36 TraesCS6B01G142600 chr5A 96.491 57 1 1 802 857 642109588 642109644 6.270000e-15 93.5
37 TraesCS6B01G142600 chr5A 96.364 55 2 0 803 857 648886090 648886144 2.260000e-14 91.6
38 TraesCS6B01G142600 chr4B 98.077 52 1 0 806 857 273912137 273912086 2.260000e-14 91.6
39 TraesCS6B01G142600 chr1A 90.141 71 5 2 289 359 190095435 190095503 2.260000e-14 91.6
40 TraesCS6B01G142600 chr1A 88.732 71 6 2 289 359 190191447 190191515 1.050000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G142600 chr6B 142449008 142454886 5878 False 10857.000000 10857 100.0000 1 5879 1 chr6B.!!$F1 5878
1 TraesCS6B01G142600 chr6B 142439136 142440637 1501 False 337.000000 422 96.2805 892 1147 2 chr6B.!!$F2 255
2 TraesCS6B01G142600 chr6A 84976623 84981248 4625 False 3687.000000 6770 93.4050 967 5872 2 chr6A.!!$F1 4905
3 TraesCS6B01G142600 chr6D 67507061 67512017 4956 False 4078.000000 6761 95.6250 963 5872 2 chr6D.!!$F3 4909
4 TraesCS6B01G142600 chr6D 291637152 291637779 627 True 305.000000 427 91.9555 4 434 2 chr6D.!!$R1 430
5 TraesCS6B01G142600 chr3B 145893400 145894750 1350 False 303.000000 466 93.7470 1 803 3 chr3B.!!$F1 802
6 TraesCS6B01G142600 chr1B 567371518 567372942 1424 False 384.000000 453 92.2680 1 809 2 chr1B.!!$F1 808
7 TraesCS6B01G142600 chr2B 157281441 157282642 1201 False 296.333333 449 93.4520 1 809 3 chr2B.!!$F1 808
8 TraesCS6B01G142600 chr7A 136352118 136352862 744 False 309.000000 429 92.1790 1 434 2 chr7A.!!$F1 433
9 TraesCS6B01G142600 chr5D 540147361 540147993 632 True 301.500000 420 91.7610 4 434 2 chr5D.!!$R1 430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 1734 0.108329 AAGATAACTGACCCCGCACG 60.108 55.0 0.00 0.0 0.00 5.34 F
2139 3815 0.036732 TGCTGCGGTTCAAGAGGAAT 59.963 50.0 0.00 0.0 37.93 3.01 F
3183 4865 0.108615 AGTGTGGAATTCTCCGAGCG 60.109 55.0 5.23 0.0 45.85 5.03 F
4287 5969 0.032813 CAACCTCATTGGCAGGGGAT 60.033 55.0 0.00 0.0 40.22 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2629 4311 0.107945 AGCATGCTCCGGAGAACTTC 60.108 55.000 35.69 17.06 0.0 3.01 R
3613 5295 2.049767 TCATGCCGTCAGGTAGCGA 61.050 57.895 0.00 0.00 40.5 4.93 R
4465 6147 0.179134 CTCCTAAGAAGTGACGCCGG 60.179 60.000 0.00 0.00 0.0 6.13 R
5352 7108 1.333619 GGTGTTTGCTGATGTCGTTGT 59.666 47.619 0.00 0.00 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.137116 CAACCCTAGCAGCTACATTGTA 57.863 45.455 0.00 0.00 0.00 2.41
58 59 2.167900 GGCCGACTCTAGGTTATGTGTT 59.832 50.000 0.00 0.00 0.00 3.32
73 74 1.414919 TGTGTTGAGGCCGAAAGTAGT 59.585 47.619 0.00 0.00 0.00 2.73
232 239 0.327480 ACACCCATATGGCAGAGGGA 60.327 55.000 23.56 0.00 44.30 4.20
318 716 5.659048 ACTTTCTTTAGTTCTGTCAAGCG 57.341 39.130 0.00 0.00 0.00 4.68
325 723 5.449107 TTAGTTCTGTCAAGCGACTACTT 57.551 39.130 0.00 0.00 43.06 2.24
377 776 4.325422 GGCCTTCCTCTCCTTCCTAATTTT 60.325 45.833 0.00 0.00 0.00 1.82
418 817 3.861840 TGAAGCGCATATATAGAAGGCC 58.138 45.455 11.47 0.00 0.00 5.19
419 818 3.515502 TGAAGCGCATATATAGAAGGCCT 59.484 43.478 11.47 0.00 0.00 5.19
420 819 4.709886 TGAAGCGCATATATAGAAGGCCTA 59.290 41.667 5.16 0.00 0.00 3.93
421 820 4.657436 AGCGCATATATAGAAGGCCTAC 57.343 45.455 5.16 0.00 0.00 3.18
422 821 4.282496 AGCGCATATATAGAAGGCCTACT 58.718 43.478 5.16 0.00 0.00 2.57
423 822 4.339814 AGCGCATATATAGAAGGCCTACTC 59.660 45.833 5.16 0.00 0.00 2.59
424 823 4.339814 GCGCATATATAGAAGGCCTACTCT 59.660 45.833 5.16 9.30 0.00 3.24
425 824 5.163499 GCGCATATATAGAAGGCCTACTCTT 60.163 44.000 12.22 3.89 0.00 2.85
426 825 6.628398 GCGCATATATAGAAGGCCTACTCTTT 60.628 42.308 12.22 7.38 0.00 2.52
427 826 6.975772 CGCATATATAGAAGGCCTACTCTTTC 59.024 42.308 12.22 1.81 0.00 2.62
428 827 6.975772 GCATATATAGAAGGCCTACTCTTTCG 59.024 42.308 12.22 0.00 0.00 3.46
429 828 7.363094 GCATATATAGAAGGCCTACTCTTTCGT 60.363 40.741 12.22 0.00 0.00 3.85
430 829 6.980416 ATATAGAAGGCCTACTCTTTCGTT 57.020 37.500 12.22 0.00 0.00 3.85
431 830 5.678955 ATAGAAGGCCTACTCTTTCGTTT 57.321 39.130 12.22 0.00 0.00 3.60
432 831 4.353383 AGAAGGCCTACTCTTTCGTTTT 57.647 40.909 5.16 0.00 0.00 2.43
442 841 5.224821 ACTCTTTCGTTTTAGGCCTACTT 57.775 39.130 13.46 0.00 0.00 2.24
446 845 6.962686 TCTTTCGTTTTAGGCCTACTTTTTC 58.037 36.000 13.46 0.00 0.00 2.29
447 846 4.996062 TCGTTTTAGGCCTACTTTTTCG 57.004 40.909 13.46 11.57 0.00 3.46
456 855 8.625786 TTAGGCCTACTTTTTCGTTTTATCTT 57.374 30.769 13.46 0.00 0.00 2.40
457 856 7.520451 AGGCCTACTTTTTCGTTTTATCTTT 57.480 32.000 1.29 0.00 0.00 2.52
458 857 7.591165 AGGCCTACTTTTTCGTTTTATCTTTC 58.409 34.615 1.29 0.00 0.00 2.62
459 858 6.805271 GGCCTACTTTTTCGTTTTATCTTTCC 59.195 38.462 0.00 0.00 0.00 3.13
460 859 6.805271 GCCTACTTTTTCGTTTTATCTTTCCC 59.195 38.462 0.00 0.00 0.00 3.97
461 860 7.309012 GCCTACTTTTTCGTTTTATCTTTCCCT 60.309 37.037 0.00 0.00 0.00 4.20
462 861 8.235226 CCTACTTTTTCGTTTTATCTTTCCCTC 58.765 37.037 0.00 0.00 0.00 4.30
463 862 6.665465 ACTTTTTCGTTTTATCTTTCCCTCG 58.335 36.000 0.00 0.00 0.00 4.63
464 863 4.673534 TTTCGTTTTATCTTTCCCTCGC 57.326 40.909 0.00 0.00 0.00 5.03
465 864 3.604875 TCGTTTTATCTTTCCCTCGCT 57.395 42.857 0.00 0.00 0.00 4.93
466 865 3.934068 TCGTTTTATCTTTCCCTCGCTT 58.066 40.909 0.00 0.00 0.00 4.68
467 866 4.320870 TCGTTTTATCTTTCCCTCGCTTT 58.679 39.130 0.00 0.00 0.00 3.51
468 867 4.390909 TCGTTTTATCTTTCCCTCGCTTTC 59.609 41.667 0.00 0.00 0.00 2.62
469 868 4.436986 CGTTTTATCTTTCCCTCGCTTTCC 60.437 45.833 0.00 0.00 0.00 3.13
470 869 4.569719 TTTATCTTTCCCTCGCTTTCCT 57.430 40.909 0.00 0.00 0.00 3.36
471 870 4.569719 TTATCTTTCCCTCGCTTTCCTT 57.430 40.909 0.00 0.00 0.00 3.36
472 871 2.474410 TCTTTCCCTCGCTTTCCTTC 57.526 50.000 0.00 0.00 0.00 3.46
473 872 1.003233 TCTTTCCCTCGCTTTCCTTCC 59.997 52.381 0.00 0.00 0.00 3.46
474 873 1.003696 CTTTCCCTCGCTTTCCTTCCT 59.996 52.381 0.00 0.00 0.00 3.36
475 874 1.064825 TTCCCTCGCTTTCCTTCCTT 58.935 50.000 0.00 0.00 0.00 3.36
557 956 6.348540 CCTTTCCTTCCTTATTTTCTGTGACG 60.349 42.308 0.00 0.00 0.00 4.35
574 1394 5.945155 TGTGACGTTGCTTAAGTTTCTTTT 58.055 33.333 4.02 0.00 0.00 2.27
580 1400 6.643360 ACGTTGCTTAAGTTTCTTTTTGTTGT 59.357 30.769 4.02 0.00 0.00 3.32
605 1425 0.676782 ACATTAGCCGGGTGAGTTGC 60.677 55.000 18.40 0.00 0.00 4.17
631 1451 3.572584 CGGCTACGTGTTCTTTTCTAGT 58.427 45.455 0.00 0.00 34.81 2.57
758 1585 4.937620 AGCGTAAATTCATCAGAAGAAGCA 59.062 37.500 0.00 0.00 37.14 3.91
759 1586 5.412594 AGCGTAAATTCATCAGAAGAAGCAA 59.587 36.000 0.00 0.00 37.14 3.91
760 1587 6.094603 AGCGTAAATTCATCAGAAGAAGCAAT 59.905 34.615 0.00 0.00 37.14 3.56
761 1588 6.749118 GCGTAAATTCATCAGAAGAAGCAATT 59.251 34.615 0.00 0.00 37.14 2.32
762 1589 7.253552 GCGTAAATTCATCAGAAGAAGCAATTG 60.254 37.037 0.00 0.00 37.14 2.32
763 1590 7.752239 CGTAAATTCATCAGAAGAAGCAATTGT 59.248 33.333 7.40 0.00 37.14 2.71
764 1591 7.884816 AAATTCATCAGAAGAAGCAATTGTG 57.115 32.000 7.40 0.00 37.14 3.33
765 1592 6.829229 ATTCATCAGAAGAAGCAATTGTGA 57.171 33.333 7.40 1.19 37.14 3.58
766 1593 5.618056 TCATCAGAAGAAGCAATTGTGAC 57.382 39.130 7.40 0.00 33.36 3.67
767 1594 4.152938 TCATCAGAAGAAGCAATTGTGACG 59.847 41.667 7.40 0.00 33.36 4.35
768 1595 2.807967 TCAGAAGAAGCAATTGTGACGG 59.192 45.455 7.40 0.00 0.00 4.79
769 1596 2.549754 CAGAAGAAGCAATTGTGACGGT 59.450 45.455 7.40 0.00 0.00 4.83
770 1597 2.549754 AGAAGAAGCAATTGTGACGGTG 59.450 45.455 7.40 0.00 0.00 4.94
771 1598 2.254546 AGAAGCAATTGTGACGGTGA 57.745 45.000 7.40 0.00 0.00 4.02
772 1599 2.571212 AGAAGCAATTGTGACGGTGAA 58.429 42.857 7.40 0.00 0.00 3.18
773 1600 3.149196 AGAAGCAATTGTGACGGTGAAT 58.851 40.909 7.40 0.00 0.00 2.57
774 1601 3.189287 AGAAGCAATTGTGACGGTGAATC 59.811 43.478 7.40 0.00 0.00 2.52
775 1602 1.812571 AGCAATTGTGACGGTGAATCC 59.187 47.619 7.40 0.00 0.00 3.01
789 1616 3.802685 GGTGAATCCGAAGACCTAATTCG 59.197 47.826 1.29 1.29 46.94 3.34
790 1617 4.430908 GTGAATCCGAAGACCTAATTCGT 58.569 43.478 7.25 0.00 46.18 3.85
791 1618 4.267928 GTGAATCCGAAGACCTAATTCGTG 59.732 45.833 7.25 0.22 46.18 4.35
792 1619 2.288961 TCCGAAGACCTAATTCGTGC 57.711 50.000 7.25 0.00 46.18 5.34
793 1620 1.822990 TCCGAAGACCTAATTCGTGCT 59.177 47.619 7.25 0.00 46.18 4.40
794 1621 2.232941 TCCGAAGACCTAATTCGTGCTT 59.767 45.455 7.25 0.00 46.18 3.91
795 1622 3.000727 CCGAAGACCTAATTCGTGCTTT 58.999 45.455 7.25 0.00 46.18 3.51
796 1623 4.082081 TCCGAAGACCTAATTCGTGCTTTA 60.082 41.667 7.25 0.00 46.18 1.85
797 1624 4.809426 CCGAAGACCTAATTCGTGCTTTAT 59.191 41.667 7.25 0.00 46.18 1.40
798 1625 5.981315 CCGAAGACCTAATTCGTGCTTTATA 59.019 40.000 7.25 0.00 46.18 0.98
799 1626 6.477688 CCGAAGACCTAATTCGTGCTTTATAA 59.522 38.462 7.25 0.00 46.18 0.98
800 1627 7.170998 CCGAAGACCTAATTCGTGCTTTATAAT 59.829 37.037 7.25 0.00 46.18 1.28
801 1628 8.548721 CGAAGACCTAATTCGTGCTTTATAATT 58.451 33.333 0.17 0.00 43.42 1.40
810 1637 7.478520 TTCGTGCTTTATAATTAGGAGAAGC 57.521 36.000 13.57 13.57 39.78 3.86
857 1684 8.958119 AGACTCAATCCGTGCTTTATTATTAA 57.042 30.769 0.00 0.00 0.00 1.40
858 1685 9.391006 AGACTCAATCCGTGCTTTATTATTAAA 57.609 29.630 0.00 0.00 0.00 1.52
882 1709 7.704359 AAAAATGGAGAGATAGGGAGAGATT 57.296 36.000 0.00 0.00 0.00 2.40
883 1710 8.805145 AAAAATGGAGAGATAGGGAGAGATTA 57.195 34.615 0.00 0.00 0.00 1.75
884 1711 8.434589 AAAATGGAGAGATAGGGAGAGATTAG 57.565 38.462 0.00 0.00 0.00 1.73
885 1712 5.528600 TGGAGAGATAGGGAGAGATTAGG 57.471 47.826 0.00 0.00 0.00 2.69
886 1713 4.293634 TGGAGAGATAGGGAGAGATTAGGG 59.706 50.000 0.00 0.00 0.00 3.53
887 1714 4.542525 GGAGAGATAGGGAGAGATTAGGGA 59.457 50.000 0.00 0.00 0.00 4.20
888 1715 5.015817 GGAGAGATAGGGAGAGATTAGGGAA 59.984 48.000 0.00 0.00 0.00 3.97
889 1716 6.469533 GGAGAGATAGGGAGAGATTAGGGAAA 60.470 46.154 0.00 0.00 0.00 3.13
890 1717 6.561294 AGAGATAGGGAGAGATTAGGGAAAG 58.439 44.000 0.00 0.00 0.00 2.62
891 1718 6.336930 AGAGATAGGGAGAGATTAGGGAAAGA 59.663 42.308 0.00 0.00 0.00 2.52
892 1719 7.020576 AGAGATAGGGAGAGATTAGGGAAAGAT 59.979 40.741 0.00 0.00 0.00 2.40
893 1720 8.250998 AGATAGGGAGAGATTAGGGAAAGATA 57.749 38.462 0.00 0.00 0.00 1.98
894 1721 8.692811 AGATAGGGAGAGATTAGGGAAAGATAA 58.307 37.037 0.00 0.00 0.00 1.75
895 1722 8.673456 ATAGGGAGAGATTAGGGAAAGATAAC 57.327 38.462 0.00 0.00 0.00 1.89
896 1723 6.698670 AGGGAGAGATTAGGGAAAGATAACT 58.301 40.000 0.00 0.00 0.00 2.24
897 1724 6.556874 AGGGAGAGATTAGGGAAAGATAACTG 59.443 42.308 0.00 0.00 0.00 3.16
898 1725 6.555360 GGGAGAGATTAGGGAAAGATAACTGA 59.445 42.308 0.00 0.00 0.00 3.41
899 1726 7.438564 GGAGAGATTAGGGAAAGATAACTGAC 58.561 42.308 0.00 0.00 0.00 3.51
900 1727 7.368198 AGAGATTAGGGAAAGATAACTGACC 57.632 40.000 0.00 0.00 0.00 4.02
901 1728 6.327887 AGAGATTAGGGAAAGATAACTGACCC 59.672 42.308 0.00 0.00 40.21 4.46
902 1729 5.369993 AGATTAGGGAAAGATAACTGACCCC 59.630 44.000 9.92 0.00 40.52 4.95
903 1730 1.838077 AGGGAAAGATAACTGACCCCG 59.162 52.381 9.92 0.00 40.52 5.73
904 1731 1.664873 GGAAAGATAACTGACCCCGC 58.335 55.000 0.00 0.00 0.00 6.13
905 1732 1.065709 GGAAAGATAACTGACCCCGCA 60.066 52.381 0.00 0.00 0.00 5.69
906 1733 2.007608 GAAAGATAACTGACCCCGCAC 58.992 52.381 0.00 0.00 0.00 5.34
907 1734 0.108329 AAGATAACTGACCCCGCACG 60.108 55.000 0.00 0.00 0.00 5.34
908 1735 1.520787 GATAACTGACCCCGCACGG 60.521 63.158 1.02 1.02 0.00 4.94
909 1736 3.675619 ATAACTGACCCCGCACGGC 62.676 63.158 2.83 0.00 0.00 5.68
920 1747 2.052237 GCACGGCGACACTGTTTG 60.052 61.111 16.62 0.00 34.87 2.93
921 1748 2.631428 CACGGCGACACTGTTTGG 59.369 61.111 16.62 0.00 34.87 3.28
922 1749 2.177580 CACGGCGACACTGTTTGGT 61.178 57.895 16.62 0.00 34.87 3.67
923 1750 1.450669 ACGGCGACACTGTTTGGTT 60.451 52.632 16.62 0.00 32.29 3.67
924 1751 1.027792 ACGGCGACACTGTTTGGTTT 61.028 50.000 16.62 0.00 32.29 3.27
925 1752 0.591236 CGGCGACACTGTTTGGTTTG 60.591 55.000 0.00 0.00 0.00 2.93
926 1753 0.454196 GGCGACACTGTTTGGTTTGT 59.546 50.000 0.00 0.00 0.00 2.83
927 1754 1.544686 GCGACACTGTTTGGTTTGTG 58.455 50.000 0.00 0.00 36.59 3.33
928 1755 1.135517 GCGACACTGTTTGGTTTGTGT 60.136 47.619 0.00 0.00 44.92 3.72
929 1756 2.669950 GCGACACTGTTTGGTTTGTGTT 60.670 45.455 0.00 0.00 42.72 3.32
930 1757 2.914214 CGACACTGTTTGGTTTGTGTTG 59.086 45.455 0.00 0.00 42.72 3.33
931 1758 3.365465 CGACACTGTTTGGTTTGTGTTGA 60.365 43.478 6.52 0.00 43.64 3.18
932 1759 3.908213 ACACTGTTTGGTTTGTGTTGAC 58.092 40.909 0.00 0.00 40.22 3.18
933 1760 3.572255 ACACTGTTTGGTTTGTGTTGACT 59.428 39.130 0.00 0.00 40.22 3.41
934 1761 3.919804 CACTGTTTGGTTTGTGTTGACTG 59.080 43.478 0.00 0.00 0.00 3.51
935 1762 3.572255 ACTGTTTGGTTTGTGTTGACTGT 59.428 39.130 0.00 0.00 0.00 3.55
936 1763 3.906998 TGTTTGGTTTGTGTTGACTGTG 58.093 40.909 0.00 0.00 0.00 3.66
937 1764 3.319405 TGTTTGGTTTGTGTTGACTGTGT 59.681 39.130 0.00 0.00 0.00 3.72
938 1765 3.567576 TTGGTTTGTGTTGACTGTGTG 57.432 42.857 0.00 0.00 0.00 3.82
939 1766 2.509569 TGGTTTGTGTTGACTGTGTGT 58.490 42.857 0.00 0.00 0.00 3.72
940 1767 2.227626 TGGTTTGTGTTGACTGTGTGTG 59.772 45.455 0.00 0.00 0.00 3.82
941 1768 2.227865 GGTTTGTGTTGACTGTGTGTGT 59.772 45.455 0.00 0.00 0.00 3.72
942 1769 3.305064 GGTTTGTGTTGACTGTGTGTGTT 60.305 43.478 0.00 0.00 0.00 3.32
943 1770 3.550950 TTGTGTTGACTGTGTGTGTTG 57.449 42.857 0.00 0.00 0.00 3.33
944 1771 2.772287 TGTGTTGACTGTGTGTGTTGA 58.228 42.857 0.00 0.00 0.00 3.18
945 1772 2.741517 TGTGTTGACTGTGTGTGTTGAG 59.258 45.455 0.00 0.00 0.00 3.02
946 1773 3.000041 GTGTTGACTGTGTGTGTTGAGA 59.000 45.455 0.00 0.00 0.00 3.27
947 1774 3.000041 TGTTGACTGTGTGTGTTGAGAC 59.000 45.455 0.00 0.00 0.00 3.36
948 1775 3.262420 GTTGACTGTGTGTGTTGAGACT 58.738 45.455 0.00 0.00 0.00 3.24
949 1776 2.892374 TGACTGTGTGTGTTGAGACTG 58.108 47.619 0.00 0.00 0.00 3.51
950 1777 2.205074 GACTGTGTGTGTTGAGACTGG 58.795 52.381 0.00 0.00 0.00 4.00
951 1778 1.831106 ACTGTGTGTGTTGAGACTGGA 59.169 47.619 0.00 0.00 0.00 3.86
952 1779 2.159043 ACTGTGTGTGTTGAGACTGGAG 60.159 50.000 0.00 0.00 0.00 3.86
953 1780 2.101415 CTGTGTGTGTTGAGACTGGAGA 59.899 50.000 0.00 0.00 0.00 3.71
954 1781 2.101415 TGTGTGTGTTGAGACTGGAGAG 59.899 50.000 0.00 0.00 0.00 3.20
955 1782 1.688735 TGTGTGTTGAGACTGGAGAGG 59.311 52.381 0.00 0.00 0.00 3.69
956 1783 1.001406 GTGTGTTGAGACTGGAGAGGG 59.999 57.143 0.00 0.00 0.00 4.30
957 1784 0.610687 GTGTTGAGACTGGAGAGGGG 59.389 60.000 0.00 0.00 0.00 4.79
958 1785 0.191064 TGTTGAGACTGGAGAGGGGT 59.809 55.000 0.00 0.00 0.00 4.95
959 1786 0.610687 GTTGAGACTGGAGAGGGGTG 59.389 60.000 0.00 0.00 0.00 4.61
960 1787 0.545309 TTGAGACTGGAGAGGGGTGG 60.545 60.000 0.00 0.00 0.00 4.61
961 1788 1.687493 GAGACTGGAGAGGGGTGGG 60.687 68.421 0.00 0.00 0.00 4.61
978 1805 1.490490 TGGGAGAGAGAGAGAGAGAGC 59.510 57.143 0.00 0.00 0.00 4.09
984 1811 3.871574 GAGAGAGAGAGCGCGCGT 61.872 66.667 32.35 17.97 0.00 6.01
1489 2747 1.472878 CCATCTCAAAGGTCGACGAGA 59.527 52.381 18.97 18.97 38.78 4.04
1523 2781 2.815647 GGCCGCCGACAAAGAGAG 60.816 66.667 0.00 0.00 0.00 3.20
1724 3400 3.028969 GCTCATCCAGCCGATTGC 58.971 61.111 0.00 0.00 43.17 3.56
1968 3644 2.517450 GCCGCCATTCGTTCTCGAG 61.517 63.158 5.93 5.93 46.81 4.04
2061 3737 1.351017 CCCAAGCTGGTCAAGTTAGGA 59.649 52.381 0.00 0.00 35.17 2.94
2139 3815 0.036732 TGCTGCGGTTCAAGAGGAAT 59.963 50.000 0.00 0.00 37.93 3.01
2193 3869 0.991146 TATGGCAGCTGGACAAGGAA 59.009 50.000 17.12 0.00 38.69 3.36
2220 3896 1.967319 TTTTGCCGTCTCTCAAGCTT 58.033 45.000 0.00 0.00 0.00 3.74
2445 4121 5.047590 TCAAGAAGTAGTGGAGCACGATTTA 60.048 40.000 0.00 0.00 39.64 1.40
2471 4147 8.195165 TCAAAGAAAGAACTAGAGGAAGATCA 57.805 34.615 0.00 0.00 0.00 2.92
2484 4160 7.192852 AGAGGAAGATCACAATGTCAAGTAT 57.807 36.000 0.00 0.00 0.00 2.12
2618 4300 1.508667 TTGGCTGATGACATGGGGGT 61.509 55.000 0.00 0.00 0.00 4.95
2624 4306 3.041211 CTGATGACATGGGGGTCTCTAA 58.959 50.000 0.00 0.00 38.61 2.10
2625 4307 3.455910 CTGATGACATGGGGGTCTCTAAA 59.544 47.826 0.00 0.00 38.61 1.85
2626 4308 4.047166 TGATGACATGGGGGTCTCTAAAT 58.953 43.478 0.00 0.00 38.61 1.40
2627 4309 4.103153 TGATGACATGGGGGTCTCTAAATC 59.897 45.833 0.00 0.00 38.61 2.17
2628 4310 3.736094 TGACATGGGGGTCTCTAAATCT 58.264 45.455 0.00 0.00 38.61 2.40
2629 4311 3.455910 TGACATGGGGGTCTCTAAATCTG 59.544 47.826 0.00 0.00 38.61 2.90
2645 4327 1.561643 TCTGAAGTTCTCCGGAGCAT 58.438 50.000 27.39 11.74 0.00 3.79
2649 4331 0.326264 AAGTTCTCCGGAGCATGCTT 59.674 50.000 27.39 21.37 0.00 3.91
2694 4376 3.624777 CTGGGGTTATGCTCTTGATGTT 58.375 45.455 0.00 0.00 0.00 2.71
2703 4385 4.556942 TGCTCTTGATGTTCAGTTGTTG 57.443 40.909 0.00 0.00 0.00 3.33
2724 4406 1.483595 TTCACTCCAGGTGCCTGAGG 61.484 60.000 19.04 12.77 46.30 3.86
2754 4436 0.607762 TGCGAGGCAGCCAAATTACA 60.608 50.000 15.80 0.00 33.32 2.41
2826 4508 3.389329 TCTCTTCATCCCCTATCACAAGC 59.611 47.826 0.00 0.00 0.00 4.01
2980 4662 0.250234 TCAGACCTTGCCAGATTCCG 59.750 55.000 0.00 0.00 0.00 4.30
3183 4865 0.108615 AGTGTGGAATTCTCCGAGCG 60.109 55.000 5.23 0.00 45.85 5.03
3234 4916 9.708092 TCAAATTTGTTGCATCTGAATTTATCA 57.292 25.926 17.47 6.66 36.38 2.15
3300 4982 1.842562 ACAAGGCTGCATACTCTGGAT 59.157 47.619 0.50 0.00 0.00 3.41
3324 5006 5.270893 TGTCTTACTGTAGCAGTTTGTCA 57.729 39.130 7.11 3.04 42.59 3.58
3351 5033 2.511600 CGATCCGTTGGTGGCCTC 60.512 66.667 3.32 0.00 0.00 4.70
3567 5249 5.163395 GCTACCTGAGTCTATAGCAAACCTT 60.163 44.000 12.98 0.00 39.87 3.50
3613 5295 0.618680 TGGGTGTGCAGATCTAGCCT 60.619 55.000 11.69 0.00 0.00 4.58
3717 5399 3.364549 TGGATTTGGGCAATGGACTAAG 58.635 45.455 0.00 0.00 0.00 2.18
3799 5481 5.946942 AGATCTTATTCTTCTGAGTGGCA 57.053 39.130 0.00 0.00 0.00 4.92
3851 5533 2.489329 AGGATTTGACAAACGATGCCAG 59.511 45.455 1.94 0.00 0.00 4.85
4287 5969 0.032813 CAACCTCATTGGCAGGGGAT 60.033 55.000 0.00 0.00 40.22 3.85
4305 5987 4.938226 GGGGATAGTGAAGAAAGTCAACAG 59.062 45.833 0.00 0.00 0.00 3.16
4326 6008 5.536161 ACAGCAAGTATTCATGTTTCCAGTT 59.464 36.000 0.00 0.00 0.00 3.16
4437 6119 3.064545 GCAGTGAGATGTTATCAGTTGGC 59.935 47.826 0.00 0.00 0.00 4.52
4465 6147 0.740737 CGGGCCATCATCTTCCAAAC 59.259 55.000 4.39 0.00 0.00 2.93
4509 6191 3.019564 GTGGATTAGAAAGTGCCATGCT 58.980 45.455 0.00 0.00 0.00 3.79
4535 6217 2.805671 CGTGTGATTGGAACTTACTGCA 59.194 45.455 0.00 0.00 0.00 4.41
4579 6261 2.926200 CTGACCATTGAGTACTGCGAAG 59.074 50.000 0.00 0.00 0.00 3.79
4720 6402 0.103755 TCTGGAGATAAGCTGCTGCG 59.896 55.000 1.35 0.00 45.42 5.18
4863 6545 4.965814 TCAAGATCTGTCATATCCCAAGC 58.034 43.478 0.00 0.00 0.00 4.01
4874 6556 4.224594 TCATATCCCAAGCATCCTCATCTC 59.775 45.833 0.00 0.00 0.00 2.75
4875 6557 0.755079 TCCCAAGCATCCTCATCTCG 59.245 55.000 0.00 0.00 0.00 4.04
4876 6558 0.467384 CCCAAGCATCCTCATCTCGT 59.533 55.000 0.00 0.00 0.00 4.18
4877 6559 1.579698 CCAAGCATCCTCATCTCGTG 58.420 55.000 0.00 0.00 0.00 4.35
4878 6560 1.137675 CCAAGCATCCTCATCTCGTGA 59.862 52.381 0.00 0.00 35.05 4.35
5044 6800 1.372582 ACACCTGTGCATGAATAGCG 58.627 50.000 0.00 0.00 33.85 4.26
5061 6817 7.324935 TGAATAGCGTACCTGAATGAAAGTAA 58.675 34.615 0.00 0.00 0.00 2.24
5102 6858 1.084289 GGTAAACCAGCCTAGCAACG 58.916 55.000 0.00 0.00 35.64 4.10
5114 6870 4.025401 GCAACGTGTCCCTTGCGG 62.025 66.667 0.00 0.00 33.89 5.69
5172 6928 6.621316 TTGTACGCAAGAACATTTTTAGGA 57.379 33.333 0.00 0.00 43.62 2.94
5196 6952 7.201920 GGAGTTGTTAGATTGTATCTGCTCCTA 60.202 40.741 0.00 0.00 40.51 2.94
5286 7042 3.773119 GGTCCTGGTCTGGTATAAACTGA 59.227 47.826 0.00 0.00 0.00 3.41
5351 7107 8.598924 CAAGTAAGTTATGTCACTAATGCAGAG 58.401 37.037 0.00 0.00 0.00 3.35
5352 7108 8.067751 AGTAAGTTATGTCACTAATGCAGAGA 57.932 34.615 5.45 0.00 0.00 3.10
5400 7156 5.480642 TTGGTTCATTGCCACAACATTAT 57.519 34.783 0.00 0.00 35.46 1.28
5415 7171 6.468956 CACAACATTATACGGAAACTGCAATC 59.531 38.462 0.00 0.00 0.00 2.67
5442 7198 8.296713 TGTTTAAATCCAGAAACAGAAGCATAC 58.703 33.333 0.00 0.00 39.88 2.39
5445 7201 7.472334 AAATCCAGAAACAGAAGCATACAAT 57.528 32.000 0.00 0.00 0.00 2.71
5515 7271 1.627864 TCAGTGGCTGCACAGTAGTA 58.372 50.000 0.50 0.00 0.00 1.82
5516 7272 1.546029 TCAGTGGCTGCACAGTAGTAG 59.454 52.381 0.50 0.00 0.00 2.57
5517 7273 1.273606 CAGTGGCTGCACAGTAGTAGT 59.726 52.381 0.50 0.00 0.00 2.73
5526 7282 6.406624 GGCTGCACAGTAGTAGTTCCTAATAA 60.407 42.308 0.50 0.00 0.00 1.40
5540 7297 5.609533 TCCTAATAAGCTGAAGGGTACAC 57.390 43.478 0.00 0.00 0.00 2.90
5611 7368 4.842091 GCTTCGCTGCGCCATTGG 62.842 66.667 18.65 0.00 0.00 3.16
5620 7377 2.259204 CGCCATTGGTGCTGTTGG 59.741 61.111 2.75 0.00 0.00 3.77
5635 7392 6.313658 GGTGCTGTTGGGATTTCATAATTTTC 59.686 38.462 0.00 0.00 0.00 2.29
5660 7417 2.825836 GGTTGGCGCATGGGAGAG 60.826 66.667 14.90 0.00 0.00 3.20
5671 7428 2.228059 CATGGGAGAGATGATGGTTGC 58.772 52.381 0.00 0.00 0.00 4.17
5688 7445 8.020819 TGATGGTTGCGTTTTCTTTTCTTATAG 58.979 33.333 0.00 0.00 0.00 1.31
5689 7446 6.146898 TGGTTGCGTTTTCTTTTCTTATAGC 58.853 36.000 0.00 0.00 0.00 2.97
5703 7460 1.048601 TATAGCTAGCACAGTGGCCC 58.951 55.000 18.83 0.00 0.00 5.80
5788 7545 8.458052 TGATGCATAATAGTTGTTTGTTAGTGG 58.542 33.333 0.00 0.00 0.00 4.00
5796 7553 6.295039 AGTTGTTTGTTAGTGGTATGTTCG 57.705 37.500 0.00 0.00 0.00 3.95
5852 7609 7.158099 ACTTATTCTTCTTTACAACATGCCC 57.842 36.000 0.00 0.00 0.00 5.36
5872 7629 5.483583 TGCCCCATAGTAGCTTGAAAATTTT 59.516 36.000 2.28 2.28 0.00 1.82
5873 7630 6.042777 GCCCCATAGTAGCTTGAAAATTTTC 58.957 40.000 21.60 21.60 37.69 2.29
5874 7631 6.127338 GCCCCATAGTAGCTTGAAAATTTTCT 60.127 38.462 26.73 12.63 38.02 2.52
5875 7632 7.579531 GCCCCATAGTAGCTTGAAAATTTTCTT 60.580 37.037 26.73 14.59 38.02 2.52
5876 7633 7.976175 CCCCATAGTAGCTTGAAAATTTTCTTC 59.024 37.037 26.73 16.92 38.02 2.87
5877 7634 8.743714 CCCATAGTAGCTTGAAAATTTTCTTCT 58.256 33.333 26.73 21.48 38.02 2.85
5878 7635 9.565213 CCATAGTAGCTTGAAAATTTTCTTCTG 57.435 33.333 26.73 16.33 38.02 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 3.439540 GCTTTTGCATCGCCCCGA 61.440 61.111 0.00 0.00 46.58 5.14
232 239 1.073897 GCTTGTGAGCCTTGGGAGT 59.926 57.895 0.00 0.00 43.29 3.85
306 704 5.405331 AAAAAGTAGTCGCTTGACAGAAC 57.595 39.130 0.00 0.00 45.40 3.01
377 776 7.415095 CGCTTCATGTAATAAAATGGAGGACAA 60.415 37.037 0.00 0.00 0.00 3.18
399 798 4.712337 AGTAGGCCTTCTATATATGCGCTT 59.288 41.667 12.58 4.59 0.00 4.68
418 817 5.963594 AGTAGGCCTAAAACGAAAGAGTAG 58.036 41.667 15.83 0.00 0.00 2.57
419 818 5.990120 AGTAGGCCTAAAACGAAAGAGTA 57.010 39.130 15.83 0.00 0.00 2.59
420 819 4.886496 AGTAGGCCTAAAACGAAAGAGT 57.114 40.909 15.83 0.00 0.00 3.24
421 820 6.555812 AAAAGTAGGCCTAAAACGAAAGAG 57.444 37.500 15.83 0.00 0.00 2.85
422 821 6.293027 CGAAAAAGTAGGCCTAAAACGAAAGA 60.293 38.462 15.83 0.00 0.00 2.52
423 822 5.849604 CGAAAAAGTAGGCCTAAAACGAAAG 59.150 40.000 15.83 0.00 0.00 2.62
424 823 5.296531 ACGAAAAAGTAGGCCTAAAACGAAA 59.703 36.000 15.83 0.00 0.00 3.46
425 824 4.815846 ACGAAAAAGTAGGCCTAAAACGAA 59.184 37.500 15.83 0.00 0.00 3.85
426 825 4.379652 ACGAAAAAGTAGGCCTAAAACGA 58.620 39.130 15.83 0.00 0.00 3.85
427 826 4.737353 ACGAAAAAGTAGGCCTAAAACG 57.263 40.909 15.83 15.89 0.00 3.60
428 827 9.121517 GATAAAACGAAAAAGTAGGCCTAAAAC 57.878 33.333 15.83 4.77 0.00 2.43
429 828 9.070179 AGATAAAACGAAAAAGTAGGCCTAAAA 57.930 29.630 15.83 0.00 0.00 1.52
430 829 8.625786 AGATAAAACGAAAAAGTAGGCCTAAA 57.374 30.769 15.83 0.00 0.00 1.85
431 830 8.625786 AAGATAAAACGAAAAAGTAGGCCTAA 57.374 30.769 15.83 0.00 0.00 2.69
432 831 8.625786 AAAGATAAAACGAAAAAGTAGGCCTA 57.374 30.769 8.91 8.91 0.00 3.93
442 841 4.758165 AGCGAGGGAAAGATAAAACGAAAA 59.242 37.500 0.00 0.00 0.00 2.29
446 845 4.436986 GGAAAGCGAGGGAAAGATAAAACG 60.437 45.833 0.00 0.00 0.00 3.60
447 846 4.700692 AGGAAAGCGAGGGAAAGATAAAAC 59.299 41.667 0.00 0.00 0.00 2.43
456 855 1.064825 AAGGAAGGAAAGCGAGGGAA 58.935 50.000 0.00 0.00 0.00 3.97
457 856 1.946984 TAAGGAAGGAAAGCGAGGGA 58.053 50.000 0.00 0.00 0.00 4.20
458 857 3.206964 GAATAAGGAAGGAAAGCGAGGG 58.793 50.000 0.00 0.00 0.00 4.30
459 858 3.118223 AGGAATAAGGAAGGAAAGCGAGG 60.118 47.826 0.00 0.00 0.00 4.63
460 859 4.143986 AGGAATAAGGAAGGAAAGCGAG 57.856 45.455 0.00 0.00 0.00 5.03
461 860 4.514401 GAAGGAATAAGGAAGGAAAGCGA 58.486 43.478 0.00 0.00 0.00 4.93
462 861 3.628032 GGAAGGAATAAGGAAGGAAAGCG 59.372 47.826 0.00 0.00 0.00 4.68
463 862 4.861196 AGGAAGGAATAAGGAAGGAAAGC 58.139 43.478 0.00 0.00 0.00 3.51
464 863 9.480861 AAATAAGGAAGGAATAAGGAAGGAAAG 57.519 33.333 0.00 0.00 0.00 2.62
465 864 9.837681 AAAATAAGGAAGGAATAAGGAAGGAAA 57.162 29.630 0.00 0.00 0.00 3.13
466 865 9.475620 GAAAATAAGGAAGGAATAAGGAAGGAA 57.524 33.333 0.00 0.00 0.00 3.36
467 866 8.846804 AGAAAATAAGGAAGGAATAAGGAAGGA 58.153 33.333 0.00 0.00 0.00 3.36
468 867 8.907885 CAGAAAATAAGGAAGGAATAAGGAAGG 58.092 37.037 0.00 0.00 0.00 3.46
469 868 9.467796 ACAGAAAATAAGGAAGGAATAAGGAAG 57.532 33.333 0.00 0.00 0.00 3.46
470 869 9.243105 CACAGAAAATAAGGAAGGAATAAGGAA 57.757 33.333 0.00 0.00 0.00 3.36
471 870 8.611257 TCACAGAAAATAAGGAAGGAATAAGGA 58.389 33.333 0.00 0.00 0.00 3.36
472 871 8.678199 GTCACAGAAAATAAGGAAGGAATAAGG 58.322 37.037 0.00 0.00 0.00 2.69
473 872 8.678199 GGTCACAGAAAATAAGGAAGGAATAAG 58.322 37.037 0.00 0.00 0.00 1.73
474 873 8.390921 AGGTCACAGAAAATAAGGAAGGAATAA 58.609 33.333 0.00 0.00 0.00 1.40
475 874 7.928873 AGGTCACAGAAAATAAGGAAGGAATA 58.071 34.615 0.00 0.00 0.00 1.75
557 956 9.952341 CTTACAACAAAAAGAAACTTAAGCAAC 57.048 29.630 1.29 0.00 0.00 4.17
574 1394 4.216687 CCCGGCTAATGTTTCTTACAACAA 59.783 41.667 0.00 0.00 40.07 2.83
580 1400 3.262405 ACTCACCCGGCTAATGTTTCTTA 59.738 43.478 0.00 0.00 0.00 2.10
605 1425 0.172803 AAGAACACGTAGCCGCTAGG 59.827 55.000 16.70 16.70 41.62 3.02
631 1451 4.951254 TGTGTGATTCGAACTTAGGTTGA 58.049 39.130 0.00 0.00 35.58 3.18
767 1594 3.802685 CGAATTAGGTCTTCGGATTCACC 59.197 47.826 0.00 0.00 41.27 4.02
784 1611 8.560374 GCTTCTCCTAATTATAAAGCACGAATT 58.440 33.333 12.61 0.00 39.07 2.17
785 1612 7.095607 CGCTTCTCCTAATTATAAAGCACGAAT 60.096 37.037 15.54 0.00 39.17 3.34
786 1613 6.200286 CGCTTCTCCTAATTATAAAGCACGAA 59.800 38.462 15.54 0.00 39.17 3.85
787 1614 5.690409 CGCTTCTCCTAATTATAAAGCACGA 59.310 40.000 15.54 0.00 39.17 4.35
788 1615 5.462398 ACGCTTCTCCTAATTATAAAGCACG 59.538 40.000 15.54 6.88 39.17 5.34
789 1616 6.846325 ACGCTTCTCCTAATTATAAAGCAC 57.154 37.500 15.54 0.00 39.17 4.40
790 1617 8.988934 CAATACGCTTCTCCTAATTATAAAGCA 58.011 33.333 15.54 4.34 39.17 3.91
791 1618 8.989980 ACAATACGCTTCTCCTAATTATAAAGC 58.010 33.333 9.49 9.49 36.61 3.51
794 1621 9.472361 GTCACAATACGCTTCTCCTAATTATAA 57.528 33.333 0.00 0.00 0.00 0.98
795 1622 7.806487 CGTCACAATACGCTTCTCCTAATTATA 59.194 37.037 0.00 0.00 35.87 0.98
796 1623 6.641314 CGTCACAATACGCTTCTCCTAATTAT 59.359 38.462 0.00 0.00 35.87 1.28
797 1624 5.975344 CGTCACAATACGCTTCTCCTAATTA 59.025 40.000 0.00 0.00 35.87 1.40
798 1625 4.804139 CGTCACAATACGCTTCTCCTAATT 59.196 41.667 0.00 0.00 35.87 1.40
799 1626 4.360563 CGTCACAATACGCTTCTCCTAAT 58.639 43.478 0.00 0.00 35.87 1.73
800 1627 3.428452 CCGTCACAATACGCTTCTCCTAA 60.428 47.826 0.00 0.00 41.51 2.69
801 1628 2.098607 CCGTCACAATACGCTTCTCCTA 59.901 50.000 0.00 0.00 41.51 2.94
802 1629 1.135083 CCGTCACAATACGCTTCTCCT 60.135 52.381 0.00 0.00 41.51 3.69
803 1630 1.278238 CCGTCACAATACGCTTCTCC 58.722 55.000 0.00 0.00 41.51 3.71
804 1631 1.654105 CACCGTCACAATACGCTTCTC 59.346 52.381 0.00 0.00 41.51 2.87
805 1632 1.271379 TCACCGTCACAATACGCTTCT 59.729 47.619 0.00 0.00 41.51 2.85
806 1633 1.705256 TCACCGTCACAATACGCTTC 58.295 50.000 0.00 0.00 41.51 3.86
807 1634 2.157834 TTCACCGTCACAATACGCTT 57.842 45.000 0.00 0.00 41.51 4.68
808 1635 2.268298 GATTCACCGTCACAATACGCT 58.732 47.619 0.00 0.00 41.51 5.07
809 1636 1.326548 GGATTCACCGTCACAATACGC 59.673 52.381 0.00 0.00 41.51 4.42
830 1657 2.100605 AAAGCACGGATTGAGTCTCC 57.899 50.000 0.00 0.00 0.00 3.71
831 1658 7.484035 AATAATAAAGCACGGATTGAGTCTC 57.516 36.000 0.00 0.00 0.00 3.36
858 1685 7.704359 AATCTCTCCCTATCTCTCCATTTTT 57.296 36.000 0.00 0.00 0.00 1.94
862 1689 5.043432 CCCTAATCTCTCCCTATCTCTCCAT 60.043 48.000 0.00 0.00 0.00 3.41
863 1690 4.293634 CCCTAATCTCTCCCTATCTCTCCA 59.706 50.000 0.00 0.00 0.00 3.86
864 1691 4.542525 TCCCTAATCTCTCCCTATCTCTCC 59.457 50.000 0.00 0.00 0.00 3.71
865 1692 5.789574 TCCCTAATCTCTCCCTATCTCTC 57.210 47.826 0.00 0.00 0.00 3.20
866 1693 6.336930 TCTTTCCCTAATCTCTCCCTATCTCT 59.663 42.308 0.00 0.00 0.00 3.10
867 1694 6.557568 TCTTTCCCTAATCTCTCCCTATCTC 58.442 44.000 0.00 0.00 0.00 2.75
868 1695 6.553554 TCTTTCCCTAATCTCTCCCTATCT 57.446 41.667 0.00 0.00 0.00 1.98
869 1696 8.755028 GTTATCTTTCCCTAATCTCTCCCTATC 58.245 40.741 0.00 0.00 0.00 2.08
870 1697 8.469280 AGTTATCTTTCCCTAATCTCTCCCTAT 58.531 37.037 0.00 0.00 0.00 2.57
871 1698 7.730784 CAGTTATCTTTCCCTAATCTCTCCCTA 59.269 40.741 0.00 0.00 0.00 3.53
872 1699 6.556874 CAGTTATCTTTCCCTAATCTCTCCCT 59.443 42.308 0.00 0.00 0.00 4.20
873 1700 6.555360 TCAGTTATCTTTCCCTAATCTCTCCC 59.445 42.308 0.00 0.00 0.00 4.30
874 1701 7.438564 GTCAGTTATCTTTCCCTAATCTCTCC 58.561 42.308 0.00 0.00 0.00 3.71
875 1702 7.438564 GGTCAGTTATCTTTCCCTAATCTCTC 58.561 42.308 0.00 0.00 0.00 3.20
876 1703 6.327887 GGGTCAGTTATCTTTCCCTAATCTCT 59.672 42.308 0.00 0.00 33.87 3.10
877 1704 6.464607 GGGGTCAGTTATCTTTCCCTAATCTC 60.465 46.154 0.00 0.00 35.64 2.75
878 1705 5.369993 GGGGTCAGTTATCTTTCCCTAATCT 59.630 44.000 0.00 0.00 35.64 2.40
879 1706 5.622180 GGGGTCAGTTATCTTTCCCTAATC 58.378 45.833 0.00 0.00 35.64 1.75
880 1707 4.102681 CGGGGTCAGTTATCTTTCCCTAAT 59.897 45.833 0.00 0.00 35.64 1.73
881 1708 3.453353 CGGGGTCAGTTATCTTTCCCTAA 59.547 47.826 0.00 0.00 35.64 2.69
882 1709 3.036091 CGGGGTCAGTTATCTTTCCCTA 58.964 50.000 0.00 0.00 35.64 3.53
883 1710 1.838077 CGGGGTCAGTTATCTTTCCCT 59.162 52.381 0.00 0.00 35.64 4.20
884 1711 1.746171 GCGGGGTCAGTTATCTTTCCC 60.746 57.143 0.00 0.00 35.03 3.97
885 1712 1.065709 TGCGGGGTCAGTTATCTTTCC 60.066 52.381 0.00 0.00 0.00 3.13
886 1713 2.007608 GTGCGGGGTCAGTTATCTTTC 58.992 52.381 0.00 0.00 0.00 2.62
887 1714 1.674817 CGTGCGGGGTCAGTTATCTTT 60.675 52.381 0.00 0.00 0.00 2.52
888 1715 0.108329 CGTGCGGGGTCAGTTATCTT 60.108 55.000 0.00 0.00 0.00 2.40
889 1716 1.515954 CGTGCGGGGTCAGTTATCT 59.484 57.895 0.00 0.00 0.00 1.98
890 1717 1.520787 CCGTGCGGGGTCAGTTATC 60.521 63.158 2.15 0.00 0.00 1.75
891 1718 2.582436 CCGTGCGGGGTCAGTTAT 59.418 61.111 2.15 0.00 0.00 1.89
892 1719 4.382320 GCCGTGCGGGGTCAGTTA 62.382 66.667 12.82 0.00 35.78 2.24
903 1730 2.052237 CAAACAGTGTCGCCGTGC 60.052 61.111 0.00 0.00 0.00 5.34
904 1731 1.711060 AACCAAACAGTGTCGCCGTG 61.711 55.000 0.00 0.00 0.00 4.94
905 1732 1.027792 AAACCAAACAGTGTCGCCGT 61.028 50.000 0.00 0.00 0.00 5.68
906 1733 0.591236 CAAACCAAACAGTGTCGCCG 60.591 55.000 0.00 0.00 0.00 6.46
907 1734 0.454196 ACAAACCAAACAGTGTCGCC 59.546 50.000 0.00 0.00 0.00 5.54
908 1735 1.135517 ACACAAACCAAACAGTGTCGC 60.136 47.619 0.00 0.00 40.94 5.19
909 1736 2.911819 ACACAAACCAAACAGTGTCG 57.088 45.000 0.00 0.00 40.94 4.35
910 1737 3.917985 GTCAACACAAACCAAACAGTGTC 59.082 43.478 0.00 0.00 43.77 3.67
911 1738 3.572255 AGTCAACACAAACCAAACAGTGT 59.428 39.130 0.00 0.00 46.24 3.55
912 1739 3.919804 CAGTCAACACAAACCAAACAGTG 59.080 43.478 0.00 0.00 37.95 3.66
913 1740 3.572255 ACAGTCAACACAAACCAAACAGT 59.428 39.130 0.00 0.00 0.00 3.55
914 1741 3.919804 CACAGTCAACACAAACCAAACAG 59.080 43.478 0.00 0.00 0.00 3.16
915 1742 3.319405 ACACAGTCAACACAAACCAAACA 59.681 39.130 0.00 0.00 0.00 2.83
916 1743 3.672867 CACACAGTCAACACAAACCAAAC 59.327 43.478 0.00 0.00 0.00 2.93
917 1744 3.319405 ACACACAGTCAACACAAACCAAA 59.681 39.130 0.00 0.00 0.00 3.28
918 1745 2.887783 ACACACAGTCAACACAAACCAA 59.112 40.909 0.00 0.00 0.00 3.67
919 1746 2.227626 CACACACAGTCAACACAAACCA 59.772 45.455 0.00 0.00 0.00 3.67
920 1747 2.227865 ACACACACAGTCAACACAAACC 59.772 45.455 0.00 0.00 0.00 3.27
921 1748 3.552604 ACACACACAGTCAACACAAAC 57.447 42.857 0.00 0.00 0.00 2.93
922 1749 3.565902 TCAACACACACAGTCAACACAAA 59.434 39.130 0.00 0.00 0.00 2.83
923 1750 3.142174 TCAACACACACAGTCAACACAA 58.858 40.909 0.00 0.00 0.00 3.33
924 1751 2.741517 CTCAACACACACAGTCAACACA 59.258 45.455 0.00 0.00 0.00 3.72
925 1752 3.000041 TCTCAACACACACAGTCAACAC 59.000 45.455 0.00 0.00 0.00 3.32
926 1753 3.000041 GTCTCAACACACACAGTCAACA 59.000 45.455 0.00 0.00 0.00 3.33
927 1754 3.062639 CAGTCTCAACACACACAGTCAAC 59.937 47.826 0.00 0.00 0.00 3.18
928 1755 3.261580 CAGTCTCAACACACACAGTCAA 58.738 45.455 0.00 0.00 0.00 3.18
929 1756 2.418609 CCAGTCTCAACACACACAGTCA 60.419 50.000 0.00 0.00 0.00 3.41
930 1757 2.159099 TCCAGTCTCAACACACACAGTC 60.159 50.000 0.00 0.00 0.00 3.51
931 1758 1.831106 TCCAGTCTCAACACACACAGT 59.169 47.619 0.00 0.00 0.00 3.55
932 1759 2.101415 TCTCCAGTCTCAACACACACAG 59.899 50.000 0.00 0.00 0.00 3.66
933 1760 2.101415 CTCTCCAGTCTCAACACACACA 59.899 50.000 0.00 0.00 0.00 3.72
934 1761 2.546795 CCTCTCCAGTCTCAACACACAC 60.547 54.545 0.00 0.00 0.00 3.82
935 1762 1.688735 CCTCTCCAGTCTCAACACACA 59.311 52.381 0.00 0.00 0.00 3.72
936 1763 1.001406 CCCTCTCCAGTCTCAACACAC 59.999 57.143 0.00 0.00 0.00 3.82
937 1764 1.342074 CCCTCTCCAGTCTCAACACA 58.658 55.000 0.00 0.00 0.00 3.72
938 1765 0.610687 CCCCTCTCCAGTCTCAACAC 59.389 60.000 0.00 0.00 0.00 3.32
939 1766 0.191064 ACCCCTCTCCAGTCTCAACA 59.809 55.000 0.00 0.00 0.00 3.33
940 1767 0.610687 CACCCCTCTCCAGTCTCAAC 59.389 60.000 0.00 0.00 0.00 3.18
941 1768 0.545309 CCACCCCTCTCCAGTCTCAA 60.545 60.000 0.00 0.00 0.00 3.02
942 1769 1.079256 CCACCCCTCTCCAGTCTCA 59.921 63.158 0.00 0.00 0.00 3.27
943 1770 1.687493 CCCACCCCTCTCCAGTCTC 60.687 68.421 0.00 0.00 0.00 3.36
944 1771 2.174876 CTCCCACCCCTCTCCAGTCT 62.175 65.000 0.00 0.00 0.00 3.24
945 1772 1.687493 CTCCCACCCCTCTCCAGTC 60.687 68.421 0.00 0.00 0.00 3.51
946 1773 2.174876 CTCTCCCACCCCTCTCCAGT 62.175 65.000 0.00 0.00 0.00 4.00
947 1774 1.382420 CTCTCCCACCCCTCTCCAG 60.382 68.421 0.00 0.00 0.00 3.86
948 1775 1.862138 TCTCTCCCACCCCTCTCCA 60.862 63.158 0.00 0.00 0.00 3.86
949 1776 1.075600 CTCTCTCCCACCCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
950 1777 0.106217 CTCTCTCTCCCACCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
951 1778 0.553862 TCTCTCTCTCCCACCCCTCT 60.554 60.000 0.00 0.00 0.00 3.69
952 1779 0.106217 CTCTCTCTCTCCCACCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
953 1780 0.553862 TCTCTCTCTCTCCCACCCCT 60.554 60.000 0.00 0.00 0.00 4.79
954 1781 0.106217 CTCTCTCTCTCTCCCACCCC 60.106 65.000 0.00 0.00 0.00 4.95
955 1782 0.923358 TCTCTCTCTCTCTCCCACCC 59.077 60.000 0.00 0.00 0.00 4.61
956 1783 1.843851 TCTCTCTCTCTCTCTCCCACC 59.156 57.143 0.00 0.00 0.00 4.61
957 1784 2.746472 GCTCTCTCTCTCTCTCTCCCAC 60.746 59.091 0.00 0.00 0.00 4.61
958 1785 1.490490 GCTCTCTCTCTCTCTCTCCCA 59.510 57.143 0.00 0.00 0.00 4.37
959 1786 1.541233 CGCTCTCTCTCTCTCTCTCCC 60.541 61.905 0.00 0.00 0.00 4.30
960 1787 1.871080 CGCTCTCTCTCTCTCTCTCC 58.129 60.000 0.00 0.00 0.00 3.71
961 1788 1.221414 GCGCTCTCTCTCTCTCTCTC 58.779 60.000 0.00 0.00 0.00 3.20
984 1811 0.600057 CCATGGATCTCGATCTCGCA 59.400 55.000 5.56 0.00 39.60 5.10
1546 2804 4.200283 GTCCTCCTCGCTCGCCAG 62.200 72.222 0.00 0.00 0.00 4.85
1968 3644 2.106166 ACAATCATCATCAGAGAGGCCC 59.894 50.000 0.00 0.00 0.00 5.80
2061 3737 2.945890 GCATTTCTGGACGATCCCCTTT 60.946 50.000 0.00 0.00 35.03 3.11
2139 3815 1.911357 ACAGCAATCCATGACTCCTCA 59.089 47.619 0.00 0.00 0.00 3.86
2193 3869 2.808543 GAGAGACGGCAAAATTGTGTCT 59.191 45.455 17.26 17.26 43.56 3.41
2220 3896 2.849943 AGGTGGCATTTGGTCATAGGTA 59.150 45.455 0.00 0.00 30.93 3.08
2445 4121 8.820831 TGATCTTCCTCTAGTTCTTTCTTTGAT 58.179 33.333 0.00 0.00 0.00 2.57
2471 4147 8.035394 AGTCGTGAATCTTATACTTGACATTGT 58.965 33.333 0.00 0.00 0.00 2.71
2484 4160 3.394674 TGCACCAAGTCGTGAATCTTA 57.605 42.857 0.00 0.00 35.68 2.10
2552 4228 1.400142 CGCGCCCATTGACATTCTTAA 59.600 47.619 0.00 0.00 0.00 1.85
2588 4270 1.069432 CATCAGCCAATGACGCATAGC 60.069 52.381 6.64 6.64 41.91 2.97
2618 4300 5.262009 TCCGGAGAACTTCAGATTTAGAGA 58.738 41.667 0.00 0.00 0.00 3.10
2624 4306 1.902508 TGCTCCGGAGAACTTCAGATT 59.097 47.619 35.69 0.00 0.00 2.40
2625 4307 1.561643 TGCTCCGGAGAACTTCAGAT 58.438 50.000 35.69 0.00 0.00 2.90
2626 4308 1.205655 CATGCTCCGGAGAACTTCAGA 59.794 52.381 35.69 7.42 0.00 3.27
2627 4309 1.649664 CATGCTCCGGAGAACTTCAG 58.350 55.000 35.69 12.29 0.00 3.02
2628 4310 0.391661 GCATGCTCCGGAGAACTTCA 60.392 55.000 35.69 22.28 0.00 3.02
2629 4311 0.107945 AGCATGCTCCGGAGAACTTC 60.108 55.000 35.69 17.06 0.00 3.01
2645 4327 2.377310 GCGCGGACTTTACGAAGCA 61.377 57.895 8.83 0.00 36.29 3.91
2649 4331 1.962092 GCAATGCGCGGACTTTACGA 61.962 55.000 8.83 0.00 0.00 3.43
2694 4376 2.564771 CTGGAGTGAAGCAACAACTGA 58.435 47.619 0.00 0.00 0.00 3.41
2724 4406 2.474816 CTGCCTCGCAAATCTAGTACC 58.525 52.381 0.00 0.00 38.41 3.34
2754 4436 1.072965 CCAACTGACTTGGGAAGCTCT 59.927 52.381 0.00 0.00 45.46 4.09
2980 4662 4.585879 TGCAGGTTTTGAAGATACCCTAC 58.414 43.478 0.00 0.00 32.20 3.18
2986 4668 9.691362 GTTAAGATTTTGCAGGTTTTGAAGATA 57.309 29.630 0.00 0.00 0.00 1.98
3234 4916 2.089980 GCCTCAAGATCACTGCATTGT 58.910 47.619 3.77 0.00 0.00 2.71
3300 4982 6.988522 TGACAAACTGCTACAGTAAGACATA 58.011 36.000 0.00 0.00 44.62 2.29
3324 5006 2.764572 ACCAACGGATCGAGGTAATTCT 59.235 45.455 0.00 0.00 37.14 2.40
3351 5033 2.847327 TGAGAGTTTGAAGCTCCAGG 57.153 50.000 5.39 0.00 33.69 4.45
3567 5249 3.071602 GGCTTAACCTCTCCAGCATCATA 59.928 47.826 0.00 0.00 33.64 2.15
3613 5295 2.049767 TCATGCCGTCAGGTAGCGA 61.050 57.895 0.00 0.00 40.50 4.93
3717 5399 5.314923 TGAGCAAGGATAATGTTTCAAGC 57.685 39.130 0.00 0.00 0.00 4.01
3780 5462 4.774726 AGACTGCCACTCAGAAGAATAAGA 59.225 41.667 0.00 0.00 45.72 2.10
3799 5481 3.873952 GAGCGGCATTCAATTCTAAGACT 59.126 43.478 1.45 0.00 0.00 3.24
3851 5533 5.491982 TCTTATTCCTCAAGTTTGCTCTCC 58.508 41.667 0.00 0.00 0.00 3.71
4287 5969 5.428253 ACTTGCTGTTGACTTTCTTCACTA 58.572 37.500 0.00 0.00 0.00 2.74
4305 5987 6.259550 AGAACTGGAAACATGAATACTTGC 57.740 37.500 0.00 0.00 41.51 4.01
4437 6119 2.438434 GATGGCCCGAACACCCTG 60.438 66.667 0.00 0.00 0.00 4.45
4465 6147 0.179134 CTCCTAAGAAGTGACGCCGG 60.179 60.000 0.00 0.00 0.00 6.13
4509 6191 2.519377 AGTTCCAATCACACGACGAA 57.481 45.000 0.00 0.00 0.00 3.85
4535 6217 1.035139 CTCAAGTTTTGGCCTGTGCT 58.965 50.000 3.32 0.00 37.74 4.40
4579 6261 0.887387 TCTGGCAAAACACGTAGCCC 60.887 55.000 11.09 0.00 46.45 5.19
4720 6402 0.606673 GGCAGTGAGACCAACTTCCC 60.607 60.000 0.00 0.00 0.00 3.97
4863 6545 1.401905 TCACGTCACGAGATGAGGATG 59.598 52.381 2.91 0.00 44.50 3.51
4874 6556 3.000078 GCATTATTACCTGTCACGTCACG 60.000 47.826 0.00 0.00 0.00 4.35
4875 6557 3.930229 TGCATTATTACCTGTCACGTCAC 59.070 43.478 0.00 0.00 0.00 3.67
4876 6558 4.195225 TGCATTATTACCTGTCACGTCA 57.805 40.909 0.00 0.00 0.00 4.35
4877 6559 5.734855 AATGCATTATTACCTGTCACGTC 57.265 39.130 11.02 0.00 0.00 4.34
4878 6560 7.217200 AGATAATGCATTATTACCTGTCACGT 58.783 34.615 28.16 6.72 34.22 4.49
4963 6717 4.984785 GCCCATGTCAAAGAAGAAAAACTC 59.015 41.667 0.00 0.00 0.00 3.01
5044 6800 7.927048 ACAAACAGTTACTTTCATTCAGGTAC 58.073 34.615 0.00 0.00 0.00 3.34
5061 6817 7.891498 ACCTTTTGAATAGGTAACAAACAGT 57.109 32.000 5.49 0.00 44.11 3.55
5114 6870 5.812127 ACAATCAAGCAAACCTTCAAAGAAC 59.188 36.000 0.00 0.00 0.00 3.01
5172 6928 6.552445 AGGAGCAGATACAATCTAACAACT 57.448 37.500 0.00 0.00 37.58 3.16
5196 6952 5.527582 GGATATTATTTGTCTGAACCGCACT 59.472 40.000 0.00 0.00 0.00 4.40
5286 7042 2.384828 TGCACATCGTATACTCCTGGT 58.615 47.619 0.56 0.00 0.00 4.00
5321 7077 7.119262 GCATTAGTGACATAACTTACTTGTGGT 59.881 37.037 0.00 0.00 0.00 4.16
5328 7084 8.121167 GTCTCTGCATTAGTGACATAACTTAC 57.879 38.462 0.00 0.00 45.06 2.34
5351 7107 2.602217 GGTGTTTGCTGATGTCGTTGTC 60.602 50.000 0.00 0.00 0.00 3.18
5352 7108 1.333619 GGTGTTTGCTGATGTCGTTGT 59.666 47.619 0.00 0.00 0.00 3.32
5384 7140 4.891627 TCCGTATAATGTTGTGGCAATG 57.108 40.909 0.00 0.00 0.00 2.82
5400 7156 6.621316 TTTAAACAGATTGCAGTTTCCGTA 57.379 33.333 5.19 0.00 38.71 4.02
5442 7198 2.642139 ATTGCAGCTCCACGAAATTG 57.358 45.000 0.00 0.00 0.00 2.32
5445 7201 3.451141 AAAAATTGCAGCTCCACGAAA 57.549 38.095 0.00 0.00 0.00 3.46
5515 7271 5.724854 TGTACCCTTCAGCTTATTAGGAACT 59.275 40.000 0.00 0.00 46.37 3.01
5516 7272 5.816258 GTGTACCCTTCAGCTTATTAGGAAC 59.184 44.000 0.00 0.00 0.00 3.62
5517 7273 5.394883 CGTGTACCCTTCAGCTTATTAGGAA 60.395 44.000 0.00 0.00 0.00 3.36
5526 7282 3.596214 CATAAACGTGTACCCTTCAGCT 58.404 45.455 0.00 0.00 0.00 4.24
5540 7297 5.036737 GCTCAAATGAATGGACCATAAACG 58.963 41.667 7.59 0.00 0.00 3.60
5611 7368 7.099120 AGAAAATTATGAAATCCCAACAGCAC 58.901 34.615 0.00 0.00 0.00 4.40
5635 7392 2.270047 CCATGCGCCAACCAAATTAAG 58.730 47.619 4.18 0.00 0.00 1.85
5660 7417 5.222631 AGAAAAGAAAACGCAACCATCATC 58.777 37.500 0.00 0.00 0.00 2.92
5671 7428 7.739295 TGTGCTAGCTATAAGAAAAGAAAACG 58.261 34.615 17.23 0.00 0.00 3.60
5718 7475 6.430864 TCTAATTTGATAAAGATGGTGCCCA 58.569 36.000 0.00 0.00 38.19 5.36
5763 7520 8.458843 ACCACTAACAAACAACTATTATGCATC 58.541 33.333 0.19 0.00 0.00 3.91
5829 7586 6.152661 TGGGGCATGTTGTAAAGAAGAATAAG 59.847 38.462 0.00 0.00 0.00 1.73
5852 7609 9.565213 CAGAAGAAAATTTTCAAGCTACTATGG 57.435 33.333 28.00 8.91 39.61 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.