Multiple sequence alignment - TraesCS6B01G142500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G142500 chr6B 100.000 7035 0 0 1 7035 142235885 142228851 0.000000e+00 12992.0
1 TraesCS6B01G142500 chr6B 82.500 120 21 0 4896 5015 213549325 213549444 9.650000e-19 106.0
2 TraesCS6B01G142500 chr6A 92.074 3520 171 52 3450 6913 84925505 84922038 0.000000e+00 4855.0
3 TraesCS6B01G142500 chr6A 90.035 3171 157 60 252 3346 84928619 84925532 0.000000e+00 3958.0
4 TraesCS6B01G142500 chr6A 100.000 28 0 0 2593 2620 558178544 558178571 1.300000e-02 52.8
5 TraesCS6B01G142500 chr6D 92.157 2754 141 26 4186 6911 67379495 67376789 0.000000e+00 3819.0
6 TraesCS6B01G142500 chr6D 90.353 2778 134 56 95 2815 67383271 67380571 0.000000e+00 3522.0
7 TraesCS6B01G142500 chr6D 93.718 589 19 6 2747 3334 67380575 67380004 0.000000e+00 867.0
8 TraesCS6B01G142500 chr6D 94.647 467 19 3 3450 3912 67379961 67379497 0.000000e+00 719.0
9 TraesCS6B01G142500 chr2A 85.175 1140 138 20 3450 4584 77168280 77167167 0.000000e+00 1140.0
10 TraesCS6B01G142500 chr2A 83.306 1204 129 36 4896 6037 77166932 77165739 0.000000e+00 1044.0
11 TraesCS6B01G142500 chr2A 81.950 759 99 23 1061 1808 77170551 77169820 6.030000e-170 608.0
12 TraesCS6B01G142500 chr2A 79.315 788 90 34 2017 2783 77169609 77168874 1.060000e-132 484.0
13 TraesCS6B01G142500 chr2A 83.000 400 41 12 2782 3155 77168847 77168449 3.140000e-88 337.0
14 TraesCS6B01G142500 chr2A 99.206 126 1 0 3331 3456 713701348 713701473 1.970000e-55 228.0
15 TraesCS6B01G142500 chr2A 99.206 126 0 1 3331 3456 435507278 435507402 7.100000e-55 226.0
16 TraesCS6B01G142500 chr2A 89.655 145 6 7 4639 4774 77167061 77166917 7.250000e-40 176.0
17 TraesCS6B01G142500 chr2A 86.466 133 11 2 3202 3334 77168447 77168322 9.520000e-29 139.0
18 TraesCS6B01G142500 chr2A 86.667 90 12 0 1887 1976 77169702 77169613 4.490000e-17 100.0
19 TraesCS6B01G142500 chr2D 85.188 1141 127 22 3450 4584 76642383 76641279 0.000000e+00 1133.0
20 TraesCS6B01G142500 chr2D 79.547 1369 171 61 5254 6535 76640352 76639006 0.000000e+00 876.0
21 TraesCS6B01G142500 chr2D 82.672 756 96 21 1063 1808 76644687 76643957 7.700000e-179 638.0
22 TraesCS6B01G142500 chr2D 90.429 303 22 2 2017 2316 76643747 76643449 6.620000e-105 392.0
23 TraesCS6B01G142500 chr2D 84.539 401 36 16 2782 3160 76642941 76642545 2.400000e-99 374.0
24 TraesCS6B01G142500 chr2D 89.492 295 21 6 4899 5184 76641039 76640746 1.440000e-96 364.0
25 TraesCS6B01G142500 chr2D 87.500 144 10 7 4639 4774 76641170 76641027 7.300000e-35 159.0
26 TraesCS6B01G142500 chr2D 87.970 133 9 3 3202 3334 76642546 76642421 4.400000e-32 150.0
27 TraesCS6B01G142500 chr2B 79.384 1722 215 79 4896 6529 117885914 117884245 0.000000e+00 1085.0
28 TraesCS6B01G142500 chr2B 83.786 1141 135 22 3450 4584 117887247 117886151 0.000000e+00 1037.0
29 TraesCS6B01G142500 chr2B 79.936 942 132 37 1061 1976 117889968 117889058 2.140000e-179 640.0
30 TraesCS6B01G142500 chr2B 89.439 303 24 4 2017 2316 117889054 117888757 6.660000e-100 375.0
31 TraesCS6B01G142500 chr2B 87.448 239 27 2 2919 3155 117887653 117887416 8.990000e-69 272.0
32 TraesCS6B01G142500 chr2B 96.269 134 4 1 3331 3464 450995989 450995857 1.190000e-52 219.0
33 TraesCS6B01G142500 chr2B 87.166 187 9 7 528 705 614387895 614388075 1.550000e-46 198.0
34 TraesCS6B01G142500 chr2B 87.791 172 7 8 543 705 614493351 614493517 9.320000e-44 189.0
35 TraesCS6B01G142500 chr2B 88.194 144 9 6 4639 4774 117886042 117885899 1.570000e-36 165.0
36 TraesCS6B01G142500 chr2B 100.000 28 0 0 4801 4828 247921691 247921718 1.300000e-02 52.8
37 TraesCS6B01G142500 chr5B 85.812 437 36 11 6437 6870 150777270 150776857 2.330000e-119 440.0
38 TraesCS6B01G142500 chr7B 99.206 126 1 0 3331 3456 729313213 729313088 1.970000e-55 228.0
39 TraesCS6B01G142500 chr7B 97.692 130 2 1 3331 3460 558864019 558863891 9.180000e-54 222.0
40 TraesCS6B01G142500 chr7B 88.372 172 7 5 528 691 733495397 733495563 2.000000e-45 195.0
41 TraesCS6B01G142500 chr7B 88.095 168 7 5 528 687 695002649 695002811 3.350000e-43 187.0
42 TraesCS6B01G142500 chr1A 100.000 123 0 0 3330 3452 49248804 49248682 1.970000e-55 228.0
43 TraesCS6B01G142500 chr1A 100.000 30 0 0 2703 2732 177438082 177438111 1.000000e-03 56.5
44 TraesCS6B01G142500 chr7D 96.403 139 2 3 3331 3467 474076732 474076869 7.100000e-55 226.0
45 TraesCS6B01G142500 chr7D 99.174 121 1 0 3331 3451 401387056 401387176 1.190000e-52 219.0
46 TraesCS6B01G142500 chr4D 93.960 149 3 5 3331 3474 152007948 152007801 3.300000e-53 220.0
47 TraesCS6B01G142500 chr4A 86.631 187 10 7 528 705 648529648 648529828 7.200000e-45 193.0
48 TraesCS6B01G142500 chr4A 96.875 32 1 0 2704 2735 521308543 521308512 4.000000e-03 54.7
49 TraesCS6B01G142500 chr4A 100.000 29 0 0 2704 2732 625529179 625529151 4.000000e-03 54.7
50 TraesCS6B01G142500 chr3B 86.096 187 11 7 528 705 316302623 316302803 3.350000e-43 187.0
51 TraesCS6B01G142500 chr3B 86.014 143 7 5 528 662 754354752 754354615 2.650000e-29 141.0
52 TraesCS6B01G142500 chr3B 100.000 29 0 0 2703 2731 532227126 532227154 4.000000e-03 54.7
53 TraesCS6B01G142500 chr4B 85.561 187 12 9 528 705 620640427 620640607 1.560000e-41 182.0
54 TraesCS6B01G142500 chr4B 97.059 34 1 0 2698 2731 99015318 99015285 2.740000e-04 58.4
55 TraesCS6B01G142500 chr5D 100.000 29 0 0 2704 2732 113376577 113376605 4.000000e-03 54.7
56 TraesCS6B01G142500 chr3A 96.970 33 0 1 2704 2735 113926986 113927018 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G142500 chr6B 142228851 142235885 7034 True 12992.000000 12992 100.000000 1 7035 1 chr6B.!!$R1 7034
1 TraesCS6B01G142500 chr6A 84922038 84928619 6581 True 4406.500000 4855 91.054500 252 6913 2 chr6A.!!$R1 6661
2 TraesCS6B01G142500 chr6D 67376789 67383271 6482 True 2231.750000 3819 92.718750 95 6911 4 chr6D.!!$R1 6816
3 TraesCS6B01G142500 chr2A 77165739 77170551 4812 True 503.500000 1140 84.441750 1061 6037 8 chr2A.!!$R1 4976
4 TraesCS6B01G142500 chr2D 76639006 76644687 5681 True 510.750000 1133 85.917125 1063 6535 8 chr2D.!!$R1 5472
5 TraesCS6B01G142500 chr2B 117884245 117889968 5723 True 595.666667 1085 84.697833 1061 6529 6 chr2B.!!$R2 5468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 257 0.250793 AAACCGGTCCATCATGCGTA 59.749 50.000 8.04 0.00 0.00 4.42 F
727 760 0.682209 GGGCTGTGGATGTTCATGCT 60.682 55.000 5.95 0.00 0.00 3.79 F
1082 1142 0.468226 GCCATGACGGTGGATAAGGA 59.532 55.000 7.80 0.00 42.02 3.36 F
2317 2451 1.204231 TGTGCTTTGAAACTGCAAGCA 59.796 42.857 2.92 2.92 37.60 3.91 F
3334 4097 0.179936 AGGCACTGCTATCCTGAAGC 59.820 55.000 0.00 0.00 37.18 3.86 F
3902 4674 0.042131 AGGTTGGTGGATACTCGGGA 59.958 55.000 0.00 0.00 37.61 5.14 F
3907 4679 1.829222 TGGTGGATACTCGGGAAGTTC 59.171 52.381 0.00 0.00 39.55 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1052 1109 0.735978 CGTCATGGCTACAAGCGTGA 60.736 55.000 6.65 2.65 43.62 4.35 R
1616 1685 1.108727 CCACTGAGCAAACCAAGCCA 61.109 55.000 0.00 0.00 0.00 4.75 R
2829 3240 1.410882 GTCCCATGTCTGCTAGACTCC 59.589 57.143 14.60 0.00 45.27 3.85 R
3343 4106 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21 R
5023 5879 0.915872 TCATGGTCATGCTCCCTGGT 60.916 55.000 6.10 0.00 38.65 4.00 R
5724 6942 2.256158 CGTCTGCCGTCCGTACAA 59.744 61.111 0.00 0.00 0.00 2.41 R
6038 7263 2.479837 TGTAACACTGTTCGAGGCAAG 58.520 47.619 0.00 0.00 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 7.031372 ACATGAACAACTGATAAATGACATGC 58.969 34.615 0.00 0.00 36.70 4.06
101 102 7.432059 TGAACAACTGATAAATGACATGCAAA 58.568 30.769 0.00 0.00 0.00 3.68
246 255 1.714899 GGAAACCGGTCCATCATGCG 61.715 60.000 8.04 0.00 37.65 4.73
248 257 0.250793 AAACCGGTCCATCATGCGTA 59.749 50.000 8.04 0.00 0.00 4.42
250 259 1.949133 CCGGTCCATCATGCGTACG 60.949 63.158 11.84 11.84 0.00 3.67
338 356 2.464459 GCATCCCTTCCGCTTCGTG 61.464 63.158 0.00 0.00 0.00 4.35
380 408 4.025401 CCGTGTGCGCCAAGTTCC 62.025 66.667 4.18 0.00 36.67 3.62
388 416 1.741770 CGCCAAGTTCCTTCTCCCG 60.742 63.158 0.00 0.00 0.00 5.14
472 500 3.587933 GCGACTCGATCTCCGCCT 61.588 66.667 1.63 0.00 41.59 5.52
611 639 2.185608 GGAGCTCGTTCTCTGCCC 59.814 66.667 7.83 0.00 33.70 5.36
612 640 2.355193 GGAGCTCGTTCTCTGCCCT 61.355 63.158 7.83 0.00 33.70 5.19
628 656 1.077212 CCTCCCAAGGTGAGCATGG 60.077 63.158 0.00 0.00 37.94 3.66
727 760 0.682209 GGGCTGTGGATGTTCATGCT 60.682 55.000 5.95 0.00 0.00 3.79
731 764 1.471287 CTGTGGATGTTCATGCTGGTG 59.529 52.381 5.95 0.00 0.00 4.17
745 778 1.883638 GCTGGTGGATGTGTGTGATGT 60.884 52.381 0.00 0.00 0.00 3.06
746 779 2.615240 GCTGGTGGATGTGTGTGATGTA 60.615 50.000 0.00 0.00 0.00 2.29
747 780 3.673902 CTGGTGGATGTGTGTGATGTAA 58.326 45.455 0.00 0.00 0.00 2.41
748 781 4.264253 CTGGTGGATGTGTGTGATGTAAT 58.736 43.478 0.00 0.00 0.00 1.89
749 782 4.009002 TGGTGGATGTGTGTGATGTAATG 58.991 43.478 0.00 0.00 0.00 1.90
768 801 3.266510 TGTTCCTGCTAGCCTAACATG 57.733 47.619 13.29 0.00 0.00 3.21
769 802 2.571653 TGTTCCTGCTAGCCTAACATGT 59.428 45.455 13.29 0.00 0.00 3.21
792 825 6.018262 TGTGTGCTAATGACAACAAGAACTAC 60.018 38.462 0.00 0.00 0.00 2.73
861 894 2.546368 TGACAGCGACACCATAAAACAC 59.454 45.455 0.00 0.00 0.00 3.32
873 906 6.814146 ACACCATAAAACACGAACAATTTTGT 59.186 30.769 0.00 0.00 44.72 2.83
901 945 5.240623 TGTTCATAAAACAGTCATGTCCACC 59.759 40.000 0.00 0.00 39.29 4.61
909 953 4.985538 ACAGTCATGTCCACCTATTTTGT 58.014 39.130 0.00 0.00 32.99 2.83
1028 1080 4.439057 TGTCCACTTCATAAATCTACCGC 58.561 43.478 0.00 0.00 0.00 5.68
1047 1104 4.056125 CGCCACGCCTCACAGAGA 62.056 66.667 0.00 0.00 0.00 3.10
1052 1109 2.154462 CCACGCCTCACAGAGAAAAAT 58.846 47.619 0.00 0.00 0.00 1.82
1069 1126 2.401583 AATCACGCTTGTAGCCATGA 57.598 45.000 0.00 0.00 38.18 3.07
1082 1142 0.468226 GCCATGACGGTGGATAAGGA 59.532 55.000 7.80 0.00 42.02 3.36
1314 1378 2.735126 GCAATTTTGATGGTCGCGGATT 60.735 45.455 6.13 0.00 0.00 3.01
1501 1570 7.231519 ACTTCTTATTTTCCTTTCTCCTTGTGG 59.768 37.037 0.00 0.00 0.00 4.17
1517 1586 1.266718 TGTGGCACATTTTCTTCTCGC 59.733 47.619 17.96 0.00 44.52 5.03
1669 1738 9.337396 TGTTGATACAACTGACTCTTTATTTGT 57.663 29.630 14.19 0.00 0.00 2.83
1727 1797 3.270027 GCACATACTGGAACATGCTACA 58.730 45.455 0.00 0.00 36.53 2.74
1873 1996 8.820933 CACAGTGAAACATGGTTGTATCTATAG 58.179 37.037 0.00 0.00 41.43 1.31
1874 1997 8.540388 ACAGTGAAACATGGTTGTATCTATAGT 58.460 33.333 0.00 0.00 41.43 2.12
1981 2108 3.769844 TGATGACCTTTCTCCTCCACTAC 59.230 47.826 0.00 0.00 0.00 2.73
2317 2451 1.204231 TGTGCTTTGAAACTGCAAGCA 59.796 42.857 2.92 2.92 37.60 3.91
2386 2520 3.205338 CACACTCAACCATCAACACAGA 58.795 45.455 0.00 0.00 0.00 3.41
2827 3238 8.800370 TCACTGAATTTTGTATATGTGGCTTA 57.200 30.769 0.00 0.00 0.00 3.09
2829 3240 9.454585 CACTGAATTTTGTATATGTGGCTTATG 57.545 33.333 0.00 0.00 0.00 1.90
2933 3682 5.875224 TCCATGACATTGGAAAACTGTCTA 58.125 37.500 0.00 0.00 42.82 2.59
3270 4023 7.195374 TGTGTAATATAGAAAGGTGGCTTCT 57.805 36.000 0.00 0.00 37.00 2.85
3271 4024 7.272978 TGTGTAATATAGAAAGGTGGCTTCTC 58.727 38.462 0.00 0.00 34.90 2.87
3272 4025 7.093068 TGTGTAATATAGAAAGGTGGCTTCTCA 60.093 37.037 0.00 0.00 34.90 3.27
3273 4026 7.224949 GTGTAATATAGAAAGGTGGCTTCTCAC 59.775 40.741 0.00 0.00 34.90 3.51
3274 4027 5.957771 ATATAGAAAGGTGGCTTCTCACA 57.042 39.130 0.00 0.00 39.27 3.58
3275 4028 4.640771 ATAGAAAGGTGGCTTCTCACAA 57.359 40.909 0.00 0.00 39.27 3.33
3276 4029 3.297134 AGAAAGGTGGCTTCTCACAAA 57.703 42.857 0.00 0.00 39.27 2.83
3277 4030 3.631250 AGAAAGGTGGCTTCTCACAAAA 58.369 40.909 0.00 0.00 39.27 2.44
3278 4031 3.381590 AGAAAGGTGGCTTCTCACAAAAC 59.618 43.478 0.00 0.00 39.27 2.43
3279 4032 1.692411 AGGTGGCTTCTCACAAAACC 58.308 50.000 0.00 0.00 39.27 3.27
3334 4097 0.179936 AGGCACTGCTATCCTGAAGC 59.820 55.000 0.00 0.00 37.18 3.86
3335 4098 0.179936 GGCACTGCTATCCTGAAGCT 59.820 55.000 0.00 0.00 40.73 3.74
3337 4100 1.669779 GCACTGCTATCCTGAAGCTTG 59.330 52.381 2.10 0.00 40.73 4.01
3338 4101 1.669779 CACTGCTATCCTGAAGCTTGC 59.330 52.381 2.10 0.00 40.73 4.01
3340 4103 2.768527 ACTGCTATCCTGAAGCTTGCTA 59.231 45.455 2.10 0.00 40.73 3.49
3341 4104 3.390639 ACTGCTATCCTGAAGCTTGCTAT 59.609 43.478 2.10 0.00 40.73 2.97
3342 4105 3.995705 CTGCTATCCTGAAGCTTGCTATC 59.004 47.826 2.10 0.00 40.73 2.08
3343 4106 3.244353 TGCTATCCTGAAGCTTGCTATCC 60.244 47.826 2.10 0.00 40.73 2.59
3345 4108 4.565236 GCTATCCTGAAGCTTGCTATCCAT 60.565 45.833 2.10 0.00 37.01 3.41
3346 4109 3.204306 TCCTGAAGCTTGCTATCCATG 57.796 47.619 2.10 0.00 0.00 3.66
3347 4110 2.507058 TCCTGAAGCTTGCTATCCATGT 59.493 45.455 2.10 0.00 0.00 3.21
3348 4111 2.617308 CCTGAAGCTTGCTATCCATGTG 59.383 50.000 2.10 0.00 0.00 3.21
3352 4115 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
3353 4116 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
3354 4117 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
3355 4118 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
3356 4119 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
3359 4122 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
3362 4125 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
3364 4127 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
3373 4136 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
3375 4138 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
3376 4139 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
3377 4140 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
3378 4141 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
3379 4142 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
3380 4143 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
3381 4144 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
3382 4145 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
3383 4146 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
3384 4147 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
3385 4148 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
3386 4149 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
3387 4150 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
3388 4151 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
3389 4152 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
3390 4153 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
3391 4154 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
3392 4155 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
3393 4156 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
3394 4157 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
3395 4158 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
3396 4159 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
3397 4160 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
3398 4161 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
3399 4162 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
3400 4163 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
3401 4164 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
3402 4165 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
3403 4166 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
3404 4167 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
3405 4168 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
3406 4169 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
3407 4170 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
3408 4171 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
3409 4172 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
3410 4173 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
3411 4174 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
3412 4175 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
3423 4186 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
3424 4187 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
3425 4188 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
3426 4189 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
3427 4190 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
3428 4191 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
3429 4192 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
3430 4193 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
3431 4194 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
3432 4195 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
3433 4196 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
3434 4197 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
3435 4198 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
3436 4199 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
3437 4200 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
3438 4201 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
3439 4202 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
3440 4203 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
3441 4204 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
3442 4205 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
3443 4206 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
3444 4207 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
3445 4208 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
3446 4209 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
3447 4210 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
3448 4211 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3553 4318 5.003804 AGTCGTTTTCCATATGCTTGACTT 58.996 37.500 0.00 0.00 30.53 3.01
3569 4334 8.439993 TGCTTGACTTGTTGTTGTAATAGTTA 57.560 30.769 0.00 0.00 0.00 2.24
3642 4414 2.289506 GGTGGTTAAGCTCTTCGGAACT 60.290 50.000 6.19 0.00 0.00 3.01
3899 4671 3.190535 CCAAAAAGGTTGGTGGATACTCG 59.809 47.826 0.00 0.00 34.92 4.18
3902 4674 0.042131 AGGTTGGTGGATACTCGGGA 59.958 55.000 0.00 0.00 37.61 5.14
3907 4679 1.829222 TGGTGGATACTCGGGAAGTTC 59.171 52.381 0.00 0.00 39.55 3.01
3913 4685 6.168389 GTGGATACTCGGGAAGTTCTTTTAA 58.832 40.000 2.25 0.00 39.55 1.52
3916 4688 6.260271 GGATACTCGGGAAGTTCTTTTAATGG 59.740 42.308 2.25 0.00 39.55 3.16
4024 4801 3.735746 GCTTTGTTTGGTGATTACACTGC 59.264 43.478 0.00 0.00 45.32 4.40
4127 4904 9.750783 TGTATTTCTAGGACTACTACTTGAACT 57.249 33.333 0.68 0.00 30.39 3.01
4167 4944 6.484540 CAGCAATGATGTTTCTAGTCATGAC 58.515 40.000 18.47 18.47 33.19 3.06
4168 4945 6.315642 CAGCAATGATGTTTCTAGTCATGACT 59.684 38.462 30.11 30.11 45.02 3.41
4169 4946 6.538021 AGCAATGATGTTTCTAGTCATGACTC 59.462 38.462 31.09 16.98 42.54 3.36
4170 4947 6.314648 GCAATGATGTTTCTAGTCATGACTCA 59.685 38.462 31.09 21.85 42.54 3.41
4171 4948 7.012138 GCAATGATGTTTCTAGTCATGACTCAT 59.988 37.037 31.09 25.19 42.54 2.90
4172 4949 8.336080 CAATGATGTTTCTAGTCATGACTCATG 58.664 37.037 31.09 20.99 42.54 3.07
4173 4950 7.174107 TGATGTTTCTAGTCATGACTCATGA 57.826 36.000 31.09 22.72 46.84 3.07
4406 5183 9.304335 GAGCCCTCTTACTCTTACTAATAGAAT 57.696 37.037 0.00 0.00 0.00 2.40
4512 5289 5.582665 CCTGCAGATTACAAGGTTAGTTCTC 59.417 44.000 17.39 0.00 0.00 2.87
4560 5339 3.202829 AGAAGTGCAAAGTCCCGTTTA 57.797 42.857 0.00 0.00 0.00 2.01
4658 5495 2.629051 GCAGTACTGATTAAGCCCGTT 58.371 47.619 27.08 0.00 0.00 4.44
4969 5825 7.947890 TGGAGTACTGATTTCCCTTTATTGTTT 59.052 33.333 0.00 0.00 0.00 2.83
5063 5919 2.142357 CTTCGTGCGGACCTGTGAGA 62.142 60.000 0.00 0.00 0.00 3.27
5214 6386 2.092699 AGGCAGCCTTTTGAGGAGATAC 60.093 50.000 8.70 0.00 0.00 2.24
5443 6659 5.803020 AGGTTTTCTATCTCATTCAACGC 57.197 39.130 0.00 0.00 0.00 4.84
5480 6696 3.030475 CGAGAAGATCGTGCATTTGTG 57.970 47.619 0.00 0.00 46.62 3.33
5724 6942 5.728637 ATTTTCGCAGGAAAGGAAATTCT 57.271 34.783 0.00 0.00 42.72 2.40
5884 7103 1.666553 CTGCACCGACGCCAGTTAA 60.667 57.895 0.00 0.00 0.00 2.01
6150 7399 3.436015 CAGATGCAGCAGCCATATTAGTC 59.564 47.826 7.13 0.00 41.13 2.59
6193 7463 0.600557 AAGTCAGGACACTCTGAGCG 59.399 55.000 4.19 0.00 43.54 5.03
6270 7545 5.361427 TCACTTTTACATCAAACTCGTCCA 58.639 37.500 0.00 0.00 0.00 4.02
6271 7546 5.818336 TCACTTTTACATCAAACTCGTCCAA 59.182 36.000 0.00 0.00 0.00 3.53
6294 7569 8.722480 CAATTATGGATGAAACTCTGTCTACA 57.278 34.615 0.00 0.00 0.00 2.74
6307 7582 4.442375 CTGTCTACAGACTGGTTACTGG 57.558 50.000 7.51 0.00 46.59 4.00
6308 7583 3.827302 CTGTCTACAGACTGGTTACTGGT 59.173 47.826 7.51 0.00 46.59 4.00
6309 7584 4.220724 TGTCTACAGACTGGTTACTGGTT 58.779 43.478 7.51 0.00 44.99 3.67
6310 7585 5.387788 TGTCTACAGACTGGTTACTGGTTA 58.612 41.667 7.51 0.00 44.99 2.85
6311 7586 5.242393 TGTCTACAGACTGGTTACTGGTTAC 59.758 44.000 7.51 0.00 44.99 2.50
6323 7604 2.795329 ACTGGTTACCCTGCAATCTTG 58.205 47.619 0.00 0.00 33.14 3.02
6328 7609 3.826729 GGTTACCCTGCAATCTTGTTTCT 59.173 43.478 0.00 0.00 0.00 2.52
6367 7651 1.663702 CACGCGGAGTCGGTTCTTT 60.664 57.895 12.47 0.00 36.79 2.52
6370 7654 2.677979 GCGGAGTCGGTTCTTTGCC 61.678 63.158 0.00 0.00 36.79 4.52
6387 7671 2.387445 CCGCTGGCGATGTCGAAAA 61.387 57.895 16.79 0.00 43.02 2.29
6404 7691 4.640201 TCGAAAATGGCTTTTAGATGGAGG 59.360 41.667 0.00 0.00 34.73 4.30
6487 7774 3.883744 GAGGAGCACCACCCACACG 62.884 68.421 2.07 0.00 38.94 4.49
6537 7824 1.031571 GGCACCATCGCATCCAAGAA 61.032 55.000 0.00 0.00 0.00 2.52
6543 7831 1.078709 ATCGCATCCAAGAACACACG 58.921 50.000 0.00 0.00 0.00 4.49
6546 7835 0.517316 GCATCCAAGAACACACGACC 59.483 55.000 0.00 0.00 0.00 4.79
6573 7862 0.323178 ACCTCCCTTCTGCAAGCATG 60.323 55.000 0.00 0.00 0.00 4.06
6578 7867 3.060020 CTTCTGCAAGCATGGCCCG 62.060 63.158 0.00 0.00 29.78 6.13
6597 7886 3.089284 CCGAAATAAAGGCCCAGAACTT 58.911 45.455 0.00 0.00 0.00 2.66
6625 7914 4.393371 CGGGGAGAAGAAAATGAAGAGAAC 59.607 45.833 0.00 0.00 0.00 3.01
6653 7944 5.304101 AGAGAGTAAGCTTACCCTGATGATG 59.696 44.000 28.79 0.00 34.19 3.07
6654 7945 4.061596 GAGTAAGCTTACCCTGATGATGC 58.938 47.826 28.79 3.86 34.19 3.91
6655 7946 3.713764 AGTAAGCTTACCCTGATGATGCT 59.286 43.478 28.79 6.85 34.19 3.79
6656 7947 2.634815 AGCTTACCCTGATGATGCTG 57.365 50.000 0.00 0.00 0.00 4.41
6657 7948 1.842562 AGCTTACCCTGATGATGCTGT 59.157 47.619 0.00 0.00 0.00 4.40
6658 7949 1.945394 GCTTACCCTGATGATGCTGTG 59.055 52.381 0.00 0.00 0.00 3.66
6659 7950 2.420547 GCTTACCCTGATGATGCTGTGA 60.421 50.000 0.00 0.00 0.00 3.58
6660 7951 3.746751 GCTTACCCTGATGATGCTGTGAT 60.747 47.826 0.00 0.00 0.00 3.06
6690 7988 2.392662 TCTCCCTGTTAGCCTGATGAG 58.607 52.381 0.00 0.00 0.00 2.90
6726 8026 0.856982 TTGGTGTTGGGAGTTGGGAT 59.143 50.000 0.00 0.00 0.00 3.85
6740 8040 1.043116 TGGGATCCTGCAGGTAGACG 61.043 60.000 31.58 5.81 36.34 4.18
6779 8079 2.492012 GAAGATGCTGTAGCCATCAGG 58.508 52.381 14.31 0.00 41.18 3.86
6806 8106 1.410648 CCCATCACCCATCCCTTTCAG 60.411 57.143 0.00 0.00 0.00 3.02
6808 8108 1.064166 CATCACCCATCCCTTTCAGCT 60.064 52.381 0.00 0.00 0.00 4.24
6820 8120 3.568538 CCTTTCAGCTTTTCAATCCGTG 58.431 45.455 0.00 0.00 0.00 4.94
6840 8140 3.692791 GGCAACAAATATCTTCCGGTC 57.307 47.619 0.00 0.00 0.00 4.79
6848 8149 6.238648 ACAAATATCTTCCGGTCTTTCTGTT 58.761 36.000 0.00 0.00 0.00 3.16
6850 8151 8.047310 ACAAATATCTTCCGGTCTTTCTGTTAT 58.953 33.333 0.00 0.00 0.00 1.89
6913 8214 2.815647 GCTGCTCAGGGCGTGTAC 60.816 66.667 7.12 1.48 45.43 2.90
6914 8215 2.125512 CTGCTCAGGGCGTGTACC 60.126 66.667 7.12 0.00 45.43 3.34
6915 8216 2.920384 TGCTCAGGGCGTGTACCA 60.920 61.111 7.12 0.65 45.43 3.25
6916 8217 2.345991 GCTCAGGGCGTGTACCAA 59.654 61.111 7.12 0.00 0.00 3.67
6917 8218 2.033194 GCTCAGGGCGTGTACCAAC 61.033 63.158 7.12 0.00 0.00 3.77
6918 8219 1.375523 CTCAGGGCGTGTACCAACC 60.376 63.158 7.12 0.00 0.00 3.77
6919 8220 2.107041 CTCAGGGCGTGTACCAACCA 62.107 60.000 7.12 0.00 0.00 3.67
6920 8221 1.671054 CAGGGCGTGTACCAACCAG 60.671 63.158 0.00 0.00 0.00 4.00
6921 8222 2.144738 AGGGCGTGTACCAACCAGT 61.145 57.895 0.00 0.00 0.00 4.00
6922 8223 1.670083 GGGCGTGTACCAACCAGTC 60.670 63.158 0.00 0.00 0.00 3.51
6923 8224 1.070105 GGCGTGTACCAACCAGTCA 59.930 57.895 0.00 0.00 0.00 3.41
6924 8225 0.321298 GGCGTGTACCAACCAGTCAT 60.321 55.000 0.00 0.00 0.00 3.06
6925 8226 1.076332 GCGTGTACCAACCAGTCATC 58.924 55.000 0.00 0.00 0.00 2.92
6926 8227 1.722011 CGTGTACCAACCAGTCATCC 58.278 55.000 0.00 0.00 0.00 3.51
6927 8228 1.674817 CGTGTACCAACCAGTCATCCC 60.675 57.143 0.00 0.00 0.00 3.85
6928 8229 1.349688 GTGTACCAACCAGTCATCCCA 59.650 52.381 0.00 0.00 0.00 4.37
6929 8230 1.628340 TGTACCAACCAGTCATCCCAG 59.372 52.381 0.00 0.00 0.00 4.45
6930 8231 1.906574 GTACCAACCAGTCATCCCAGA 59.093 52.381 0.00 0.00 0.00 3.86
6931 8232 1.673767 ACCAACCAGTCATCCCAGAT 58.326 50.000 0.00 0.00 0.00 2.90
6932 8233 1.283029 ACCAACCAGTCATCCCAGATG 59.717 52.381 0.00 0.00 0.00 2.90
6933 8234 1.386533 CAACCAGTCATCCCAGATGC 58.613 55.000 0.00 0.00 0.00 3.91
6934 8235 1.064906 CAACCAGTCATCCCAGATGCT 60.065 52.381 0.00 0.00 0.00 3.79
6935 8236 1.293062 ACCAGTCATCCCAGATGCTT 58.707 50.000 0.00 0.00 0.00 3.91
6936 8237 2.481441 ACCAGTCATCCCAGATGCTTA 58.519 47.619 0.00 0.00 0.00 3.09
6937 8238 2.437281 ACCAGTCATCCCAGATGCTTAG 59.563 50.000 0.00 0.00 0.00 2.18
6938 8239 2.437281 CCAGTCATCCCAGATGCTTAGT 59.563 50.000 0.00 0.00 0.00 2.24
6939 8240 3.494048 CCAGTCATCCCAGATGCTTAGTC 60.494 52.174 0.00 0.00 0.00 2.59
6940 8241 3.133542 CAGTCATCCCAGATGCTTAGTCA 59.866 47.826 0.00 0.00 0.00 3.41
6941 8242 3.387374 AGTCATCCCAGATGCTTAGTCAG 59.613 47.826 0.00 0.00 0.00 3.51
6942 8243 2.702478 TCATCCCAGATGCTTAGTCAGG 59.298 50.000 0.00 0.00 0.00 3.86
6943 8244 1.500474 TCCCAGATGCTTAGTCAGGG 58.500 55.000 0.00 0.00 42.18 4.45
6944 8245 0.471617 CCCAGATGCTTAGTCAGGGG 59.528 60.000 0.00 0.00 38.41 4.79
6945 8246 1.500474 CCAGATGCTTAGTCAGGGGA 58.500 55.000 0.00 0.00 0.00 4.81
6946 8247 1.839994 CCAGATGCTTAGTCAGGGGAA 59.160 52.381 0.00 0.00 0.00 3.97
6947 8248 2.239654 CCAGATGCTTAGTCAGGGGAAA 59.760 50.000 0.00 0.00 0.00 3.13
6948 8249 3.539604 CAGATGCTTAGTCAGGGGAAAG 58.460 50.000 0.00 0.00 0.00 2.62
6949 8250 3.198635 CAGATGCTTAGTCAGGGGAAAGA 59.801 47.826 0.00 0.00 0.00 2.52
6950 8251 4.043596 AGATGCTTAGTCAGGGGAAAGAT 58.956 43.478 0.00 0.00 0.00 2.40
6951 8252 3.914426 TGCTTAGTCAGGGGAAAGATC 57.086 47.619 0.00 0.00 0.00 2.75
6952 8253 3.454858 TGCTTAGTCAGGGGAAAGATCT 58.545 45.455 0.00 0.00 0.00 2.75
6953 8254 3.846588 TGCTTAGTCAGGGGAAAGATCTT 59.153 43.478 0.88 0.88 0.00 2.40
6954 8255 5.030147 TGCTTAGTCAGGGGAAAGATCTTA 58.970 41.667 8.75 0.00 0.00 2.10
6955 8256 5.129485 TGCTTAGTCAGGGGAAAGATCTTAG 59.871 44.000 8.75 0.00 0.00 2.18
6956 8257 5.364157 GCTTAGTCAGGGGAAAGATCTTAGA 59.636 44.000 8.75 0.00 0.00 2.10
6957 8258 6.462347 GCTTAGTCAGGGGAAAGATCTTAGAG 60.462 46.154 8.75 0.00 0.00 2.43
6958 8259 3.709141 AGTCAGGGGAAAGATCTTAGAGC 59.291 47.826 8.75 0.00 0.00 4.09
6959 8260 3.709141 GTCAGGGGAAAGATCTTAGAGCT 59.291 47.826 8.75 0.00 0.00 4.09
6960 8261 4.896482 GTCAGGGGAAAGATCTTAGAGCTA 59.104 45.833 8.75 0.00 0.00 3.32
6961 8262 4.896482 TCAGGGGAAAGATCTTAGAGCTAC 59.104 45.833 8.75 0.00 0.00 3.58
6962 8263 4.651503 CAGGGGAAAGATCTTAGAGCTACA 59.348 45.833 8.75 0.00 0.00 2.74
6963 8264 4.898861 AGGGGAAAGATCTTAGAGCTACAG 59.101 45.833 8.75 0.00 0.00 2.74
6964 8265 4.651962 GGGGAAAGATCTTAGAGCTACAGT 59.348 45.833 8.75 0.00 0.00 3.55
6965 8266 5.834204 GGGGAAAGATCTTAGAGCTACAGTA 59.166 44.000 8.75 0.00 0.00 2.74
6966 8267 6.495526 GGGGAAAGATCTTAGAGCTACAGTAT 59.504 42.308 8.75 0.00 0.00 2.12
6967 8268 7.309560 GGGGAAAGATCTTAGAGCTACAGTATC 60.310 44.444 8.75 0.00 0.00 2.24
6968 8269 7.450323 GGGAAAGATCTTAGAGCTACAGTATCT 59.550 40.741 8.75 0.00 0.00 1.98
6969 8270 8.512138 GGAAAGATCTTAGAGCTACAGTATCTC 58.488 40.741 8.75 3.55 0.00 2.75
6970 8271 7.996098 AAGATCTTAGAGCTACAGTATCTCC 57.004 40.000 6.06 0.00 0.00 3.71
6971 8272 7.329746 AGATCTTAGAGCTACAGTATCTCCT 57.670 40.000 0.00 0.00 0.00 3.69
6972 8273 8.444010 AGATCTTAGAGCTACAGTATCTCCTA 57.556 38.462 0.00 0.00 0.00 2.94
6973 8274 8.319146 AGATCTTAGAGCTACAGTATCTCCTAC 58.681 40.741 0.00 0.00 0.00 3.18
6974 8275 6.771573 TCTTAGAGCTACAGTATCTCCTACC 58.228 44.000 7.67 0.00 0.00 3.18
6975 8276 6.329460 TCTTAGAGCTACAGTATCTCCTACCA 59.671 42.308 7.67 0.00 0.00 3.25
6976 8277 5.390087 AGAGCTACAGTATCTCCTACCAA 57.610 43.478 7.67 0.00 0.00 3.67
6977 8278 5.767670 AGAGCTACAGTATCTCCTACCAAA 58.232 41.667 7.67 0.00 0.00 3.28
6978 8279 6.195700 AGAGCTACAGTATCTCCTACCAAAA 58.804 40.000 7.67 0.00 0.00 2.44
6979 8280 6.668283 AGAGCTACAGTATCTCCTACCAAAAA 59.332 38.462 7.67 0.00 0.00 1.94
6980 8281 7.345914 AGAGCTACAGTATCTCCTACCAAAAAT 59.654 37.037 7.67 0.00 0.00 1.82
6981 8282 7.862675 AGCTACAGTATCTCCTACCAAAAATT 58.137 34.615 0.00 0.00 0.00 1.82
6982 8283 7.988028 AGCTACAGTATCTCCTACCAAAAATTC 59.012 37.037 0.00 0.00 0.00 2.17
6983 8284 7.226918 GCTACAGTATCTCCTACCAAAAATTCC 59.773 40.741 0.00 0.00 0.00 3.01
6984 8285 7.027874 ACAGTATCTCCTACCAAAAATTCCA 57.972 36.000 0.00 0.00 0.00 3.53
6985 8286 7.466804 ACAGTATCTCCTACCAAAAATTCCAA 58.533 34.615 0.00 0.00 0.00 3.53
6986 8287 7.393515 ACAGTATCTCCTACCAAAAATTCCAAC 59.606 37.037 0.00 0.00 0.00 3.77
6987 8288 6.890268 AGTATCTCCTACCAAAAATTCCAACC 59.110 38.462 0.00 0.00 0.00 3.77
6988 8289 4.412843 TCTCCTACCAAAAATTCCAACCC 58.587 43.478 0.00 0.00 0.00 4.11
6989 8290 4.140900 TCTCCTACCAAAAATTCCAACCCA 60.141 41.667 0.00 0.00 0.00 4.51
6990 8291 4.757692 TCCTACCAAAAATTCCAACCCAT 58.242 39.130 0.00 0.00 0.00 4.00
6991 8292 5.905088 TCCTACCAAAAATTCCAACCCATA 58.095 37.500 0.00 0.00 0.00 2.74
6992 8293 5.955355 TCCTACCAAAAATTCCAACCCATAG 59.045 40.000 0.00 0.00 0.00 2.23
6993 8294 5.128663 CCTACCAAAAATTCCAACCCATAGG 59.871 44.000 0.00 0.00 40.04 2.57
6994 8295 3.263170 ACCAAAAATTCCAACCCATAGGC 59.737 43.478 0.00 0.00 36.11 3.93
6995 8296 3.520569 CAAAAATTCCAACCCATAGGCG 58.479 45.455 0.00 0.00 36.11 5.52
6996 8297 2.525105 AAATTCCAACCCATAGGCGT 57.475 45.000 0.00 0.00 36.11 5.68
6997 8298 1.762708 AATTCCAACCCATAGGCGTG 58.237 50.000 0.00 0.00 36.11 5.34
6998 8299 0.106719 ATTCCAACCCATAGGCGTGG 60.107 55.000 5.14 5.14 41.26 4.94
6999 8300 1.493854 TTCCAACCCATAGGCGTGGT 61.494 55.000 10.40 0.00 40.88 4.16
7000 8301 1.451387 CCAACCCATAGGCGTGGTC 60.451 63.158 10.40 0.00 37.03 4.02
7001 8302 1.813753 CAACCCATAGGCGTGGTCG 60.814 63.158 10.40 0.34 37.57 4.79
7011 8312 2.660552 CGTGGTCGCGTGGAAAGT 60.661 61.111 5.77 0.00 0.00 2.66
7012 8313 2.935955 GTGGTCGCGTGGAAAGTG 59.064 61.111 5.77 0.00 0.00 3.16
7013 8314 1.593209 GTGGTCGCGTGGAAAGTGA 60.593 57.895 5.77 0.00 30.93 3.41
7016 8317 4.336581 TCGCGTGGAAAGTGACAG 57.663 55.556 5.77 0.00 27.62 3.51
7017 8318 1.440060 TCGCGTGGAAAGTGACAGT 59.560 52.632 5.77 0.00 27.62 3.55
7018 8319 0.874175 TCGCGTGGAAAGTGACAGTG 60.874 55.000 5.77 0.00 27.62 3.66
7019 8320 0.874175 CGCGTGGAAAGTGACAGTGA 60.874 55.000 0.00 0.00 0.00 3.41
7020 8321 1.295792 GCGTGGAAAGTGACAGTGAA 58.704 50.000 0.00 0.00 0.00 3.18
7021 8322 1.873591 GCGTGGAAAGTGACAGTGAAT 59.126 47.619 0.00 0.00 0.00 2.57
7022 8323 3.064207 GCGTGGAAAGTGACAGTGAATA 58.936 45.455 0.00 0.00 0.00 1.75
7023 8324 3.496884 GCGTGGAAAGTGACAGTGAATAA 59.503 43.478 0.00 0.00 0.00 1.40
7024 8325 4.610680 GCGTGGAAAGTGACAGTGAATAAC 60.611 45.833 0.00 0.00 0.00 1.89
7025 8326 4.084013 CGTGGAAAGTGACAGTGAATAACC 60.084 45.833 0.00 0.00 0.00 2.85
7026 8327 5.063880 GTGGAAAGTGACAGTGAATAACCT 58.936 41.667 0.00 0.00 0.00 3.50
7027 8328 5.049405 GTGGAAAGTGACAGTGAATAACCTG 60.049 44.000 0.00 0.00 0.00 4.00
7028 8329 5.163248 TGGAAAGTGACAGTGAATAACCTGA 60.163 40.000 0.00 0.00 0.00 3.86
7029 8330 5.763204 GGAAAGTGACAGTGAATAACCTGAA 59.237 40.000 0.00 0.00 0.00 3.02
7030 8331 6.262273 GGAAAGTGACAGTGAATAACCTGAAA 59.738 38.462 0.00 0.00 0.00 2.69
7031 8332 7.040409 GGAAAGTGACAGTGAATAACCTGAAAT 60.040 37.037 0.00 0.00 0.00 2.17
7032 8333 8.918202 AAAGTGACAGTGAATAACCTGAAATA 57.082 30.769 0.00 0.00 0.00 1.40
7033 8334 9.520515 AAAGTGACAGTGAATAACCTGAAATAT 57.479 29.630 0.00 0.00 0.00 1.28
7034 8335 8.723942 AGTGACAGTGAATAACCTGAAATATC 57.276 34.615 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 8.183536 GCATGTCATTTATCAGTTGTTCATGTA 58.816 33.333 0.00 0.00 33.78 2.29
73 74 7.031372 GCATGTCATTTATCAGTTGTTCATGT 58.969 34.615 0.00 0.00 33.78 3.21
74 75 7.030768 TGCATGTCATTTATCAGTTGTTCATG 58.969 34.615 0.00 0.00 34.19 3.07
75 76 7.160547 TGCATGTCATTTATCAGTTGTTCAT 57.839 32.000 0.00 0.00 0.00 2.57
76 77 6.572167 TGCATGTCATTTATCAGTTGTTCA 57.428 33.333 0.00 0.00 0.00 3.18
77 78 7.872163 TTTGCATGTCATTTATCAGTTGTTC 57.128 32.000 0.00 0.00 0.00 3.18
78 79 8.836268 AATTTGCATGTCATTTATCAGTTGTT 57.164 26.923 0.00 0.00 0.00 2.83
79 80 8.836268 AAATTTGCATGTCATTTATCAGTTGT 57.164 26.923 0.00 0.00 0.00 3.32
163 168 9.699703 TCCTTTTCCAAATTTAAACCTAATTCG 57.300 29.630 0.00 0.00 0.00 3.34
210 219 5.597806 GGTTTCCGTTCATCTTTCCTTTTT 58.402 37.500 0.00 0.00 0.00 1.94
220 229 0.320946 TGGACCGGTTTCCGTTCATC 60.321 55.000 9.42 0.00 46.80 2.92
250 259 2.427540 ATATGAGCAGCCTCGGTCGC 62.428 60.000 0.00 0.00 41.13 5.19
323 335 0.174845 CATACACGAAGCGGAAGGGA 59.825 55.000 0.00 0.00 0.00 4.20
380 408 0.174845 TGGTTATGCGACGGGAGAAG 59.825 55.000 0.00 0.00 0.00 2.85
410 438 4.416738 GGAGAAGGGCTGCCGCTT 62.417 66.667 18.39 18.39 45.68 4.68
504 532 3.621394 GAACGAGAGCGGCGATGC 61.621 66.667 12.98 0.00 43.17 3.91
505 533 2.956964 GGAACGAGAGCGGCGATG 60.957 66.667 12.98 0.00 43.17 3.84
506 534 4.208686 GGGAACGAGAGCGGCGAT 62.209 66.667 12.98 2.76 43.17 4.58
611 639 4.651867 CCATGCTCACCTTGGGAG 57.348 61.111 0.00 0.00 35.94 4.30
637 665 4.284490 ACATGCTCACCTTGAGTTCTCTAA 59.716 41.667 5.14 0.00 45.94 2.10
727 760 3.778954 TTACATCACACACATCCACCA 57.221 42.857 0.00 0.00 0.00 4.17
731 764 4.943705 AGGAACATTACATCACACACATCC 59.056 41.667 0.00 0.00 0.00 3.51
745 778 5.104527 ACATGTTAGGCTAGCAGGAACATTA 60.105 40.000 26.02 10.58 38.37 1.90
746 779 4.202441 CATGTTAGGCTAGCAGGAACATT 58.798 43.478 26.13 15.52 38.37 2.71
747 780 3.200825 ACATGTTAGGCTAGCAGGAACAT 59.799 43.478 26.02 24.34 40.46 2.71
748 781 2.571653 ACATGTTAGGCTAGCAGGAACA 59.428 45.455 26.02 22.68 34.73 3.18
749 782 2.939103 CACATGTTAGGCTAGCAGGAAC 59.061 50.000 26.02 16.33 0.00 3.62
768 801 5.424121 AGTTCTTGTTGTCATTAGCACAC 57.576 39.130 0.00 0.00 0.00 3.82
769 802 5.176774 CGTAGTTCTTGTTGTCATTAGCACA 59.823 40.000 0.00 0.00 0.00 4.57
792 825 5.861787 TGATATCATAAACATAGCGGTGTCG 59.138 40.000 0.00 0.00 39.81 4.35
838 871 3.188254 TGTTTTATGGTGTCGCTGTCATG 59.812 43.478 0.00 0.00 0.00 3.07
873 906 9.072375 TGGACATGACTGTTTTATGAACATAAA 57.928 29.630 13.69 13.69 40.39 1.40
901 945 9.759259 CTGTCATACACACACATAACAAAATAG 57.241 33.333 0.00 0.00 0.00 1.73
909 953 4.893608 AGTGCTGTCATACACACACATAA 58.106 39.130 8.40 0.00 38.49 1.90
988 1040 2.932614 GACATAACATGCGAGTGCTCTT 59.067 45.455 0.00 0.00 43.34 2.85
997 1049 5.733226 TTATGAAGTGGACATAACATGCG 57.267 39.130 0.00 0.00 35.96 4.73
1041 1098 4.083802 GCTACAAGCGTGATTTTTCTCTGT 60.084 41.667 6.65 0.00 0.00 3.41
1047 1104 3.505680 TCATGGCTACAAGCGTGATTTTT 59.494 39.130 6.65 0.00 43.62 1.94
1052 1109 0.735978 CGTCATGGCTACAAGCGTGA 60.736 55.000 6.65 2.65 43.62 4.35
1069 1126 1.673808 GCGACCTCCTTATCCACCGT 61.674 60.000 0.00 0.00 0.00 4.83
1099 1159 4.711949 CTCCGCCTGCTGCACCTT 62.712 66.667 0.00 0.00 41.33 3.50
1151 1211 2.664851 CCAGCTCCGCAAACGTCA 60.665 61.111 0.00 0.00 37.70 4.35
1245 1305 0.822164 TACCTTTGAGAGCGTAGGGC 59.178 55.000 0.00 0.00 44.05 5.19
1314 1378 7.201574 CCAAAACCGAACTCGAATATATCAACA 60.202 37.037 0.00 0.00 43.02 3.33
1501 1570 2.675348 AGCTAGCGAGAAGAAAATGTGC 59.325 45.455 9.55 0.00 0.00 4.57
1517 1586 1.344438 TCCCACACAGACACAAGCTAG 59.656 52.381 0.00 0.00 0.00 3.42
1616 1685 1.108727 CCACTGAGCAAACCAAGCCA 61.109 55.000 0.00 0.00 0.00 4.75
1694 1763 6.493189 TCCAGTATGTGCATCCAATTAGTA 57.507 37.500 0.00 0.00 0.00 1.82
1727 1797 2.435805 AGTATGATCCGCACAAGGACAT 59.564 45.455 0.00 0.00 44.07 3.06
1849 1972 8.948631 ACTATAGATACAACCATGTTTCACTG 57.051 34.615 6.78 0.00 39.23 3.66
1981 2108 4.489810 AGAATAGTGAAGCAGTCTTGTCG 58.510 43.478 0.00 0.00 31.48 4.35
2293 2427 3.591196 TGCAGTTTCAAAGCACAAAGT 57.409 38.095 0.00 0.00 32.55 2.66
2386 2520 7.201947 GCTTTTATGCTCCAGGATTAAAAGGAT 60.202 37.037 24.29 10.51 33.19 3.24
2473 2612 3.282885 CTGGCTAATTGGAGAAGGTTCC 58.717 50.000 0.00 0.00 37.77 3.62
2536 2694 5.630121 TCCCTGAAGTGTATTCACAAACAT 58.370 37.500 5.21 0.00 46.01 2.71
2630 2792 6.100714 ACAAAGTTGGACTTAGGAGTTAGGAA 59.899 38.462 0.00 0.00 37.47 3.36
2827 3238 2.045524 CCCATGTCTGCTAGACTCCAT 58.954 52.381 14.60 1.68 45.27 3.41
2829 3240 1.410882 GTCCCATGTCTGCTAGACTCC 59.589 57.143 14.60 0.00 45.27 3.85
3270 4023 2.241176 ACAGGTGAGGAAGGTTTTGTGA 59.759 45.455 0.00 0.00 0.00 3.58
3271 4024 2.654863 ACAGGTGAGGAAGGTTTTGTG 58.345 47.619 0.00 0.00 0.00 3.33
3272 4025 3.382083 AACAGGTGAGGAAGGTTTTGT 57.618 42.857 0.00 0.00 0.00 2.83
3273 4026 5.359860 ACTTTAACAGGTGAGGAAGGTTTTG 59.640 40.000 0.00 0.00 0.00 2.44
3274 4027 5.359860 CACTTTAACAGGTGAGGAAGGTTTT 59.640 40.000 0.00 0.00 35.69 2.43
3275 4028 4.887655 CACTTTAACAGGTGAGGAAGGTTT 59.112 41.667 0.00 0.00 35.69 3.27
3276 4029 4.461198 CACTTTAACAGGTGAGGAAGGTT 58.539 43.478 0.00 0.00 35.69 3.50
3277 4030 3.181443 CCACTTTAACAGGTGAGGAAGGT 60.181 47.826 0.00 0.00 35.69 3.50
3278 4031 3.072476 TCCACTTTAACAGGTGAGGAAGG 59.928 47.826 0.00 0.00 35.69 3.46
3279 4032 4.351874 TCCACTTTAACAGGTGAGGAAG 57.648 45.455 0.00 0.00 35.69 3.46
3320 4083 2.328819 AGCAAGCTTCAGGATAGCAG 57.671 50.000 0.00 0.00 41.11 4.24
3334 4097 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
3335 4098 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
3337 4100 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
3338 4101 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
3340 4103 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
3341 4104 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
3342 4105 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
3343 4106 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
3345 4108 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
3346 4109 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
3347 4110 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
3348 4111 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
3356 4119 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
3359 4122 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
3362 4125 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
3364 4127 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
3365 4128 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
3382 4145 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
3383 4146 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
3384 4147 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
3385 4148 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
3386 4149 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
3387 4150 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
3388 4151 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
3389 4152 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
3390 4153 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
3391 4154 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
3392 4155 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
3393 4156 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
3402 4165 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
3403 4166 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
3404 4167 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
3405 4168 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
3406 4169 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
3407 4170 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
3408 4171 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
3409 4172 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
3410 4173 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
3411 4174 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
3412 4175 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
3413 4176 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
3414 4177 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
3415 4178 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
3416 4179 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
3417 4180 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
3418 4181 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
3419 4182 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
3420 4183 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
3421 4184 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
3422 4185 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
3423 4186 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
3424 4187 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
3425 4188 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3426 4189 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3427 4190 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3428 4191 7.534085 TTAACAACAACAACAACAACAACAA 57.466 28.000 0.00 0.00 0.00 2.83
3429 4192 7.715265 ATTAACAACAACAACAACAACAACA 57.285 28.000 0.00 0.00 0.00 3.33
3430 4193 9.518632 GTAATTAACAACAACAACAACAACAAC 57.481 29.630 0.00 0.00 0.00 3.32
3431 4194 9.477484 AGTAATTAACAACAACAACAACAACAA 57.523 25.926 0.00 0.00 0.00 2.83
3432 4195 9.477484 AAGTAATTAACAACAACAACAACAACA 57.523 25.926 0.00 0.00 0.00 3.33
3438 4201 9.303537 GGCTTTAAGTAATTAACAACAACAACA 57.696 29.630 0.00 0.00 0.00 3.33
3439 4202 9.524106 AGGCTTTAAGTAATTAACAACAACAAC 57.476 29.630 0.00 0.00 0.00 3.32
3440 4203 9.522804 CAGGCTTTAAGTAATTAACAACAACAA 57.477 29.630 0.00 0.00 0.00 2.83
3441 4204 8.688151 ACAGGCTTTAAGTAATTAACAACAACA 58.312 29.630 0.00 0.00 0.00 3.33
3442 4205 9.524106 AACAGGCTTTAAGTAATTAACAACAAC 57.476 29.630 0.00 0.00 0.00 3.32
3447 4210 9.738832 GACAAAACAGGCTTTAAGTAATTAACA 57.261 29.630 0.00 0.00 0.00 2.41
3448 4211 9.738832 TGACAAAACAGGCTTTAAGTAATTAAC 57.261 29.630 0.00 0.00 0.00 2.01
3533 4296 5.046910 ACAAGTCAAGCATATGGAAAACG 57.953 39.130 4.56 0.00 0.00 3.60
3569 4334 9.420551 GTACATTGCTTCTACTTACAACTAAGT 57.579 33.333 0.00 0.00 44.14 2.24
3625 4397 5.864628 ATGAAAGTTCCGAAGAGCTTAAC 57.135 39.130 0.00 0.00 42.12 2.01
3630 4402 3.498397 TGACAATGAAAGTTCCGAAGAGC 59.502 43.478 0.00 0.00 0.00 4.09
3696 4468 9.346005 CCGGGATTAAATTAGTTGGTATAGTTT 57.654 33.333 0.00 0.00 0.00 2.66
3711 4483 8.482128 TCAAAATAAAAGCATCCGGGATTAAAT 58.518 29.630 6.84 0.00 0.00 1.40
3720 4492 4.320690 CACACGTCAAAATAAAAGCATCCG 59.679 41.667 0.00 0.00 0.00 4.18
3899 4671 7.722363 TCAGAAAACCATTAAAAGAACTTCCC 58.278 34.615 0.00 0.00 0.00 3.97
3907 4679 9.748708 TTCACTGAATCAGAAAACCATTAAAAG 57.251 29.630 18.20 0.00 35.18 2.27
3913 4685 5.139727 TGGTTCACTGAATCAGAAAACCAT 58.860 37.500 30.82 5.97 45.01 3.55
3916 4688 5.273944 GTGTGGTTCACTGAATCAGAAAAC 58.726 41.667 18.20 17.83 43.13 2.43
4024 4801 7.276658 ACTTTTGCAGTATATCTCAAGACTTCG 59.723 37.037 0.00 0.00 31.97 3.79
4127 4904 0.670162 GCTGCAACTTGGAAGAGCAA 59.330 50.000 10.74 0.00 38.99 3.91
4553 5332 6.376018 TCCTGGTATTGAGAAAAATAAACGGG 59.624 38.462 0.00 0.00 33.28 5.28
4560 5339 5.711976 CACAGGTCCTGGTATTGAGAAAAAT 59.288 40.000 23.06 0.00 35.51 1.82
4658 5495 1.491332 TCTCGGTCCAAGGGTTTCAAA 59.509 47.619 0.00 0.00 0.00 2.69
4788 5629 2.973945 AGAACAATTGCTCTACGGTCC 58.026 47.619 9.63 0.00 0.00 4.46
4827 5668 8.974060 TTCTCCTTGTAACTTACTCACAATTT 57.026 30.769 0.71 0.00 32.14 1.82
4969 5825 4.399618 TCCTGAAACCGAAAATGACAAACA 59.600 37.500 0.00 0.00 0.00 2.83
5018 5874 1.282157 GGTCATGCTCCCTGGTAACTT 59.718 52.381 0.00 0.00 37.61 2.66
5023 5879 0.915872 TCATGGTCATGCTCCCTGGT 60.916 55.000 6.10 0.00 38.65 4.00
5214 6386 2.775911 TCCAAGATGGAGCTCACTTG 57.224 50.000 26.18 26.18 42.67 3.16
5443 6659 7.482654 TCTTCTCGACAATAAAGGCAATATG 57.517 36.000 0.00 0.00 0.00 1.78
5567 6785 8.565896 ACTGATTCACAAAAGATACAGCATAA 57.434 30.769 0.00 0.00 0.00 1.90
5630 6848 4.007659 AGCAACAAGGGAAACTATTACCG 58.992 43.478 0.00 0.00 45.13 4.02
5724 6942 2.256158 CGTCTGCCGTCCGTACAA 59.744 61.111 0.00 0.00 0.00 2.41
6038 7263 2.479837 TGTAACACTGTTCGAGGCAAG 58.520 47.619 0.00 0.00 0.00 4.01
6150 7399 3.340814 AACACAGATAGCACTGAAGGG 57.659 47.619 11.41 2.82 40.63 3.95
6193 7463 6.045318 TGTGTCAAGCAGAGAAATAGCTATC 58.955 40.000 6.72 0.00 37.70 2.08
6270 7545 8.954950 CTGTAGACAGAGTTTCATCCATAATT 57.045 34.615 3.45 0.00 46.59 1.40
6307 7582 4.762251 AGAGAAACAAGATTGCAGGGTAAC 59.238 41.667 0.00 0.00 0.00 2.50
6308 7583 4.761739 CAGAGAAACAAGATTGCAGGGTAA 59.238 41.667 0.00 0.00 0.00 2.85
6309 7584 4.202461 ACAGAGAAACAAGATTGCAGGGTA 60.202 41.667 0.00 0.00 0.00 3.69
6310 7585 3.152341 CAGAGAAACAAGATTGCAGGGT 58.848 45.455 0.00 0.00 0.00 4.34
6311 7586 3.152341 ACAGAGAAACAAGATTGCAGGG 58.848 45.455 0.00 0.00 0.00 4.45
6323 7604 3.071479 TCCATTTGGCGTACAGAGAAAC 58.929 45.455 0.00 0.00 34.44 2.78
6328 7609 0.739462 CGCTCCATTTGGCGTACAGA 60.739 55.000 0.00 0.00 45.34 3.41
6370 7654 0.587242 CATTTTCGACATCGCCAGCG 60.587 55.000 5.50 5.50 39.60 5.18
6387 7671 3.244700 CGATCCCTCCATCTAAAAGCCAT 60.245 47.826 0.00 0.00 0.00 4.40
6537 7824 2.910479 TGCCTCTCGGTCGTGTGT 60.910 61.111 0.00 0.00 0.00 3.72
6543 7831 3.462678 GGGAGGTGCCTCTCGGTC 61.463 72.222 16.80 1.20 42.38 4.79
6578 7867 4.086457 TGGAAGTTCTGGGCCTTTATTTC 58.914 43.478 4.53 3.68 0.00 2.17
6597 7886 2.373836 TCATTTTCTTCTCCCCGTTGGA 59.626 45.455 0.00 0.00 42.41 3.53
6625 7914 4.707448 TCAGGGTAAGCTTACTCTCTTCAG 59.293 45.833 31.89 21.48 42.40 3.02
6653 7944 1.397692 GAGAAGCTTCTGCATCACAGC 59.602 52.381 33.07 11.68 46.76 4.40
6654 7945 3.257130 GGGAGAAGCTTCTGCATCACAG 61.257 54.545 38.29 0.00 46.10 3.66
6655 7946 1.339438 GGGAGAAGCTTCTGCATCACA 60.339 52.381 38.29 0.00 46.10 3.58
6656 7947 1.065564 AGGGAGAAGCTTCTGCATCAC 60.066 52.381 38.29 25.45 46.10 3.06
6657 7948 1.065636 CAGGGAGAAGCTTCTGCATCA 60.066 52.381 38.29 0.00 46.10 3.07
6658 7949 1.065564 ACAGGGAGAAGCTTCTGCATC 60.066 52.381 38.29 26.35 46.10 3.91
6659 7950 0.990374 ACAGGGAGAAGCTTCTGCAT 59.010 50.000 38.29 33.04 46.10 3.96
6660 7951 0.767375 AACAGGGAGAAGCTTCTGCA 59.233 50.000 38.29 0.00 46.10 4.41
6690 7988 3.129988 CACCAATTCCTTCAGCTTCCATC 59.870 47.826 0.00 0.00 0.00 3.51
6726 8026 1.004394 TCTTCTCGTCTACCTGCAGGA 59.996 52.381 39.19 20.75 38.94 3.86
6740 8040 7.675170 GCATCTTCCGTCAAACTATTTCTTCTC 60.675 40.741 0.00 0.00 0.00 2.87
6779 8079 1.152610 ATGGGTGATGGGCTGATGC 60.153 57.895 0.00 0.00 38.76 3.91
6780 8080 0.538977 GGATGGGTGATGGGCTGATG 60.539 60.000 0.00 0.00 0.00 3.07
6781 8081 1.723128 GGGATGGGTGATGGGCTGAT 61.723 60.000 0.00 0.00 0.00 2.90
6782 8082 2.386100 GGGATGGGTGATGGGCTGA 61.386 63.158 0.00 0.00 0.00 4.26
6783 8083 1.941403 AAGGGATGGGTGATGGGCTG 61.941 60.000 0.00 0.00 0.00 4.85
6784 8084 1.224003 AAAGGGATGGGTGATGGGCT 61.224 55.000 0.00 0.00 0.00 5.19
6785 8085 0.756815 GAAAGGGATGGGTGATGGGC 60.757 60.000 0.00 0.00 0.00 5.36
6806 8106 1.269517 TGTTGCCACGGATTGAAAAGC 60.270 47.619 0.00 0.00 0.00 3.51
6808 8108 3.526931 TTTGTTGCCACGGATTGAAAA 57.473 38.095 0.00 0.00 0.00 2.29
6820 8120 3.279434 AGACCGGAAGATATTTGTTGCC 58.721 45.455 9.46 0.00 0.00 4.52
6848 8149 4.202020 CGGCGCCTAGAGCTTGATATTATA 60.202 45.833 26.68 0.00 40.39 0.98
6850 8151 2.094700 CGGCGCCTAGAGCTTGATATTA 60.095 50.000 26.68 0.00 40.39 0.98
6870 8171 1.897398 GCTTTCGGTGGCAGTGTACG 61.897 60.000 0.00 0.00 0.00 3.67
6908 8209 1.349688 TGGGATGACTGGTTGGTACAC 59.650 52.381 0.00 0.00 39.29 2.90
6913 8214 2.020694 GCATCTGGGATGACTGGTTGG 61.021 57.143 11.16 0.00 0.00 3.77
6914 8215 1.064906 AGCATCTGGGATGACTGGTTG 60.065 52.381 11.16 0.00 0.00 3.77
6915 8216 1.293062 AGCATCTGGGATGACTGGTT 58.707 50.000 11.16 0.00 0.00 3.67
6916 8217 1.293062 AAGCATCTGGGATGACTGGT 58.707 50.000 11.16 0.00 0.00 4.00
6917 8218 2.437281 ACTAAGCATCTGGGATGACTGG 59.563 50.000 11.16 2.53 0.00 4.00
6918 8219 3.133542 TGACTAAGCATCTGGGATGACTG 59.866 47.826 11.16 1.70 0.00 3.51
6919 8220 3.378512 TGACTAAGCATCTGGGATGACT 58.621 45.455 11.16 5.48 0.00 3.41
6920 8221 3.494048 CCTGACTAAGCATCTGGGATGAC 60.494 52.174 11.16 3.54 32.88 3.06
6921 8222 2.702478 CCTGACTAAGCATCTGGGATGA 59.298 50.000 11.16 0.00 32.88 2.92
6922 8223 3.123157 CCTGACTAAGCATCTGGGATG 57.877 52.381 3.44 3.44 32.88 3.51
6926 8227 1.500474 TCCCCTGACTAAGCATCTGG 58.500 55.000 0.00 0.00 35.51 3.86
6927 8228 3.198635 TCTTTCCCCTGACTAAGCATCTG 59.801 47.826 0.00 0.00 0.00 2.90
6928 8229 3.454858 TCTTTCCCCTGACTAAGCATCT 58.545 45.455 0.00 0.00 0.00 2.90
6929 8230 3.914426 TCTTTCCCCTGACTAAGCATC 57.086 47.619 0.00 0.00 0.00 3.91
6930 8231 4.043596 AGATCTTTCCCCTGACTAAGCAT 58.956 43.478 0.00 0.00 0.00 3.79
6931 8232 3.454858 AGATCTTTCCCCTGACTAAGCA 58.545 45.455 0.00 0.00 0.00 3.91
6932 8233 4.495690 AAGATCTTTCCCCTGACTAAGC 57.504 45.455 0.88 0.00 0.00 3.09
6933 8234 6.462347 GCTCTAAGATCTTTCCCCTGACTAAG 60.462 46.154 14.36 0.15 0.00 2.18
6934 8235 5.364157 GCTCTAAGATCTTTCCCCTGACTAA 59.636 44.000 14.36 0.00 0.00 2.24
6935 8236 4.896482 GCTCTAAGATCTTTCCCCTGACTA 59.104 45.833 14.36 0.00 0.00 2.59
6936 8237 3.709141 GCTCTAAGATCTTTCCCCTGACT 59.291 47.826 14.36 0.00 0.00 3.41
6937 8238 3.709141 AGCTCTAAGATCTTTCCCCTGAC 59.291 47.826 14.36 0.00 0.00 3.51
6938 8239 4.000928 AGCTCTAAGATCTTTCCCCTGA 57.999 45.455 14.36 2.69 0.00 3.86
6939 8240 4.651503 TGTAGCTCTAAGATCTTTCCCCTG 59.348 45.833 14.36 0.37 0.00 4.45
6940 8241 4.884961 TGTAGCTCTAAGATCTTTCCCCT 58.115 43.478 14.36 8.21 0.00 4.79
6941 8242 4.651962 ACTGTAGCTCTAAGATCTTTCCCC 59.348 45.833 14.36 0.77 0.00 4.81
6942 8243 5.862678 ACTGTAGCTCTAAGATCTTTCCC 57.137 43.478 14.36 0.41 0.00 3.97
6943 8244 8.404107 AGATACTGTAGCTCTAAGATCTTTCC 57.596 38.462 14.36 0.05 0.00 3.13
6944 8245 8.512138 GGAGATACTGTAGCTCTAAGATCTTTC 58.488 40.741 26.55 7.68 40.85 2.62
6945 8246 8.224720 AGGAGATACTGTAGCTCTAAGATCTTT 58.775 37.037 26.55 0.00 40.85 2.52
6946 8247 7.755618 AGGAGATACTGTAGCTCTAAGATCTT 58.244 38.462 26.55 13.56 40.85 2.40
6947 8248 7.329746 AGGAGATACTGTAGCTCTAAGATCT 57.670 40.000 26.55 14.62 40.85 2.75
6948 8249 7.551617 GGTAGGAGATACTGTAGCTCTAAGATC 59.448 44.444 26.55 12.91 40.85 2.75
6949 8250 7.017750 TGGTAGGAGATACTGTAGCTCTAAGAT 59.982 40.741 26.55 13.60 40.85 2.40
6950 8251 6.329460 TGGTAGGAGATACTGTAGCTCTAAGA 59.671 42.308 26.55 11.21 40.85 2.10
6951 8252 6.535540 TGGTAGGAGATACTGTAGCTCTAAG 58.464 44.000 26.55 0.00 40.85 2.18
6952 8253 6.511017 TGGTAGGAGATACTGTAGCTCTAA 57.489 41.667 26.55 15.40 40.85 2.10
6953 8254 6.511017 TTGGTAGGAGATACTGTAGCTCTA 57.489 41.667 26.55 16.42 40.85 2.43
6954 8255 5.390087 TTGGTAGGAGATACTGTAGCTCT 57.610 43.478 26.55 17.22 40.85 4.09
6955 8256 6.466885 TTTTGGTAGGAGATACTGTAGCTC 57.533 41.667 21.57 21.57 40.35 4.09
6956 8257 6.869206 TTTTTGGTAGGAGATACTGTAGCT 57.131 37.500 5.10 5.10 34.56 3.32
6957 8258 7.226918 GGAATTTTTGGTAGGAGATACTGTAGC 59.773 40.741 0.00 0.00 34.56 3.58
6958 8259 8.265055 TGGAATTTTTGGTAGGAGATACTGTAG 58.735 37.037 0.00 0.00 34.56 2.74
6959 8260 8.153221 TGGAATTTTTGGTAGGAGATACTGTA 57.847 34.615 0.00 0.00 34.56 2.74
6960 8261 7.027874 TGGAATTTTTGGTAGGAGATACTGT 57.972 36.000 0.00 0.00 34.56 3.55
6961 8262 7.148069 GGTTGGAATTTTTGGTAGGAGATACTG 60.148 40.741 0.00 0.00 34.56 2.74
6962 8263 6.890268 GGTTGGAATTTTTGGTAGGAGATACT 59.110 38.462 0.00 0.00 34.56 2.12
6963 8264 6.096423 GGGTTGGAATTTTTGGTAGGAGATAC 59.904 42.308 0.00 0.00 0.00 2.24
6964 8265 6.192044 GGGTTGGAATTTTTGGTAGGAGATA 58.808 40.000 0.00 0.00 0.00 1.98
6965 8266 5.023452 GGGTTGGAATTTTTGGTAGGAGAT 58.977 41.667 0.00 0.00 0.00 2.75
6966 8267 4.140900 TGGGTTGGAATTTTTGGTAGGAGA 60.141 41.667 0.00 0.00 0.00 3.71
6967 8268 4.156477 TGGGTTGGAATTTTTGGTAGGAG 58.844 43.478 0.00 0.00 0.00 3.69
6968 8269 4.200447 TGGGTTGGAATTTTTGGTAGGA 57.800 40.909 0.00 0.00 0.00 2.94
6969 8270 5.128663 CCTATGGGTTGGAATTTTTGGTAGG 59.871 44.000 0.00 0.00 0.00 3.18
6970 8271 5.395214 GCCTATGGGTTGGAATTTTTGGTAG 60.395 44.000 0.00 0.00 34.45 3.18
6971 8272 4.468153 GCCTATGGGTTGGAATTTTTGGTA 59.532 41.667 0.00 0.00 34.45 3.25
6972 8273 3.263170 GCCTATGGGTTGGAATTTTTGGT 59.737 43.478 0.00 0.00 34.45 3.67
6973 8274 3.678529 CGCCTATGGGTTGGAATTTTTGG 60.679 47.826 0.00 0.00 34.45 3.28
6974 8275 3.056179 ACGCCTATGGGTTGGAATTTTTG 60.056 43.478 0.00 0.00 33.13 2.44
6975 8276 3.056179 CACGCCTATGGGTTGGAATTTTT 60.056 43.478 0.00 0.00 35.09 1.94
6976 8277 2.495669 CACGCCTATGGGTTGGAATTTT 59.504 45.455 0.00 0.00 35.09 1.82
6977 8278 2.099405 CACGCCTATGGGTTGGAATTT 58.901 47.619 0.00 0.00 35.09 1.82
6978 8279 1.684869 CCACGCCTATGGGTTGGAATT 60.685 52.381 11.20 0.00 39.06 2.17
6979 8280 0.106719 CCACGCCTATGGGTTGGAAT 60.107 55.000 11.20 0.00 39.06 3.01
6980 8281 1.301623 CCACGCCTATGGGTTGGAA 59.698 57.895 11.20 0.00 39.06 3.53
6981 8282 1.906105 GACCACGCCTATGGGTTGGA 61.906 60.000 20.35 0.00 44.81 3.53
6982 8283 1.451387 GACCACGCCTATGGGTTGG 60.451 63.158 14.11 14.11 44.81 3.77
6983 8284 1.813753 CGACCACGCCTATGGGTTG 60.814 63.158 0.00 0.00 44.81 3.77
6984 8285 2.582436 CGACCACGCCTATGGGTT 59.418 61.111 0.00 0.00 44.81 4.11
6994 8295 2.660552 ACTTTCCACGCGACCACG 60.661 61.111 15.93 0.00 42.93 4.94
6995 8296 1.593209 TCACTTTCCACGCGACCAC 60.593 57.895 15.93 0.00 0.00 4.16
6996 8297 1.593209 GTCACTTTCCACGCGACCA 60.593 57.895 15.93 0.00 0.00 4.02
6997 8298 1.557443 CTGTCACTTTCCACGCGACC 61.557 60.000 15.93 0.00 0.00 4.79
6998 8299 0.874607 ACTGTCACTTTCCACGCGAC 60.875 55.000 15.93 0.00 0.00 5.19
6999 8300 0.874175 CACTGTCACTTTCCACGCGA 60.874 55.000 15.93 0.00 0.00 5.87
7000 8301 0.874175 TCACTGTCACTTTCCACGCG 60.874 55.000 3.53 3.53 0.00 6.01
7001 8302 1.295792 TTCACTGTCACTTTCCACGC 58.704 50.000 0.00 0.00 0.00 5.34
7002 8303 4.084013 GGTTATTCACTGTCACTTTCCACG 60.084 45.833 0.00 0.00 0.00 4.94
7003 8304 5.049405 CAGGTTATTCACTGTCACTTTCCAC 60.049 44.000 0.00 0.00 0.00 4.02
7004 8305 5.063204 CAGGTTATTCACTGTCACTTTCCA 58.937 41.667 0.00 0.00 0.00 3.53
7005 8306 5.305585 TCAGGTTATTCACTGTCACTTTCC 58.694 41.667 0.00 0.00 36.17 3.13
7006 8307 6.861065 TTCAGGTTATTCACTGTCACTTTC 57.139 37.500 0.00 0.00 36.17 2.62
7007 8308 7.823745 ATTTCAGGTTATTCACTGTCACTTT 57.176 32.000 0.00 0.00 36.17 2.66
7008 8309 9.167311 GATATTTCAGGTTATTCACTGTCACTT 57.833 33.333 0.00 0.00 36.17 3.16
7009 8310 8.723942 GATATTTCAGGTTATTCACTGTCACT 57.276 34.615 0.00 0.00 36.17 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.