Multiple sequence alignment - TraesCS6B01G142100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G142100 chr6B 100.000 4866 0 0 1478 6343 142086301 142091166 0.000000e+00 8986.0
1 TraesCS6B01G142100 chr6B 100.000 1105 0 0 1 1105 142084824 142085928 0.000000e+00 2041.0
2 TraesCS6B01G142100 chr6B 82.167 600 67 22 3398 3980 142131402 142131978 4.450000e-131 479.0
3 TraesCS6B01G142100 chr6B 93.939 66 3 1 4546 4611 142131977 142132041 1.460000e-16 99.0
4 TraesCS6B01G142100 chr6A 91.321 3998 257 50 1478 5434 84692716 84696664 0.000000e+00 5378.0
5 TraesCS6B01G142100 chr6A 91.532 248 9 5 868 1105 84692427 84692672 1.320000e-86 331.0
6 TraesCS6B01G142100 chr6A 95.455 66 2 1 4546 4611 84909700 84909636 3.130000e-18 104.0
7 TraesCS6B01G142100 chr6D 96.089 1892 61 5 2750 4633 67319504 67321390 0.000000e+00 3072.0
8 TraesCS6B01G142100 chr6D 89.812 903 77 13 4646 5538 67321375 67322272 0.000000e+00 1144.0
9 TraesCS6B01G142100 chr6D 93.112 421 21 5 5923 6343 67322951 67323363 1.510000e-170 610.0
10 TraesCS6B01G142100 chr6D 95.000 200 9 1 5727 5925 67322616 67322815 4.770000e-81 313.0
11 TraesCS6B01G142100 chr6D 98.305 59 1 0 5648 5706 67322316 67322374 3.130000e-18 104.0
12 TraesCS6B01G142100 chr6D 91.111 45 4 0 3426 3470 449776771 449776815 1.910000e-05 62.1
13 TraesCS6B01G142100 chr2B 92.593 864 62 2 1 864 683585060 683585921 0.000000e+00 1240.0
14 TraesCS6B01G142100 chr2B 92.398 855 58 7 4 856 238973924 238973075 0.000000e+00 1212.0
15 TraesCS6B01G142100 chr5B 92.396 868 60 6 1 866 634991837 634990974 0.000000e+00 1232.0
16 TraesCS6B01G142100 chr3B 92.254 865 62 5 1 864 154443421 154442561 0.000000e+00 1221.0
17 TraesCS6B01G142100 chr3A 91.734 871 68 4 1 870 646114813 646113946 0.000000e+00 1206.0
18 TraesCS6B01G142100 chr3A 83.000 100 15 2 3372 3470 725342654 725342752 8.760000e-14 89.8
19 TraesCS6B01G142100 chr7B 91.696 867 66 6 1 864 376806201 376805338 0.000000e+00 1197.0
20 TraesCS6B01G142100 chr4B 91.504 871 70 4 1 870 37312463 37311596 0.000000e+00 1195.0
21 TraesCS6B01G142100 chr5D 91.676 865 67 5 1 864 537321491 537320631 0.000000e+00 1194.0
22 TraesCS6B01G142100 chr4D 91.551 864 69 3 1 864 437944886 437945745 0.000000e+00 1188.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G142100 chr6B 142084824 142091166 6342 False 5513.5 8986 100.0000 1 6343 2 chr6B.!!$F1 6342
1 TraesCS6B01G142100 chr6B 142131402 142132041 639 False 289.0 479 88.0530 3398 4611 2 chr6B.!!$F2 1213
2 TraesCS6B01G142100 chr6A 84692427 84696664 4237 False 2854.5 5378 91.4265 868 5434 2 chr6A.!!$F1 4566
3 TraesCS6B01G142100 chr6D 67319504 67323363 3859 False 1048.6 3072 94.4636 2750 6343 5 chr6D.!!$F2 3593
4 TraesCS6B01G142100 chr2B 683585060 683585921 861 False 1240.0 1240 92.5930 1 864 1 chr2B.!!$F1 863
5 TraesCS6B01G142100 chr2B 238973075 238973924 849 True 1212.0 1212 92.3980 4 856 1 chr2B.!!$R1 852
6 TraesCS6B01G142100 chr5B 634990974 634991837 863 True 1232.0 1232 92.3960 1 866 1 chr5B.!!$R1 865
7 TraesCS6B01G142100 chr3B 154442561 154443421 860 True 1221.0 1221 92.2540 1 864 1 chr3B.!!$R1 863
8 TraesCS6B01G142100 chr3A 646113946 646114813 867 True 1206.0 1206 91.7340 1 870 1 chr3A.!!$R1 869
9 TraesCS6B01G142100 chr7B 376805338 376806201 863 True 1197.0 1197 91.6960 1 864 1 chr7B.!!$R1 863
10 TraesCS6B01G142100 chr4B 37311596 37312463 867 True 1195.0 1195 91.5040 1 870 1 chr4B.!!$R1 869
11 TraesCS6B01G142100 chr5D 537320631 537321491 860 True 1194.0 1194 91.6760 1 864 1 chr5D.!!$R1 863
12 TraesCS6B01G142100 chr4D 437944886 437945745 859 False 1188.0 1188 91.5510 1 864 1 chr4D.!!$F1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
805 813 0.322098 CACGGTTCCATTGCCCTACA 60.322 55.000 0.00 0.0 0.00 2.74 F
1662 1678 0.030773 GGCGCTGTCGATCATGTCTA 59.969 55.000 7.64 0.0 38.10 2.59 F
2473 2498 0.955919 GCCGGAGCAAAGTAGCAACT 60.956 55.000 5.05 0.0 39.53 3.16 F
2502 2527 0.035458 GTTGAGGTGAGGTGACCCTG 59.965 60.000 0.00 0.0 42.86 4.45 F
2508 2533 0.108138 GTGAGGTGACCCTGATTCCG 60.108 60.000 0.00 0.0 42.86 4.30 F
2661 2692 0.741221 GCATCAGTGAACTCCCGGAC 60.741 60.000 0.73 0.0 0.00 4.79 F
2760 2791 0.912486 ACCTCTGGAAGCACATACCC 59.088 55.000 0.00 0.0 0.00 3.69 F
3015 3046 1.221566 CGGTGATGATGTGGGAGCA 59.778 57.895 0.00 0.0 0.00 4.26 F
3380 3411 1.458486 GGGGTTGTGGTGGTGATCA 59.542 57.895 0.00 0.0 0.00 2.92 F
3411 3442 2.308570 AGGTTGTCATGGTTATCCTGCA 59.691 45.455 0.00 0.0 34.23 4.41 F
4686 4767 2.706339 ATGCTCCTCTTACTGGCTTG 57.294 50.000 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 1764 0.101040 CCGGCGGTTACGTTCTGATA 59.899 55.000 19.97 0.0 43.45 2.15 R
2493 2518 0.468226 TATGCGGAATCAGGGTCACC 59.532 55.000 0.00 0.0 0.00 4.02 R
3380 3411 2.624838 CCATGACAACCTTCACAGCTTT 59.375 45.455 0.00 0.0 0.00 3.51 R
3681 3716 4.694760 ATGCAGGTATAATCAGCAGTGA 57.305 40.909 0.00 0.0 38.75 3.41 R
4162 4216 5.444663 AAAGAGTCTTCAATCTGCCAAAC 57.555 39.130 5.70 0.0 0.00 2.93 R
4649 4730 5.163713 GGAGCATAGAAGCAAAGTAAACTGG 60.164 44.000 0.00 0.0 36.85 4.00 R
4665 4746 3.726607 CAAGCCAGTAAGAGGAGCATAG 58.273 50.000 0.00 0.0 0.00 2.23 R
4907 4995 2.775960 TCGGAGTACATAGACCAGGAGA 59.224 50.000 0.00 0.0 0.00 3.71 R
5059 5149 1.810755 ACACGAGACGATAGACTGCAA 59.189 47.619 0.00 0.0 42.25 4.08 R
5106 5196 2.005370 TAGTCTTCACCGGACCAGTT 57.995 50.000 9.46 0.0 34.56 3.16 R
5717 5815 0.108585 AAGCATGTTCGTGGACTGGT 59.891 50.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 1.070758 GTGGCCCATCGACAGATACAT 59.929 52.381 0.00 0.00 34.85 2.29
113 115 2.742372 AAAAGCTCGTCGGCGCAT 60.742 55.556 10.83 0.00 38.14 4.73
188 190 1.828461 TACAACGCCGGAACATCCCA 61.828 55.000 5.05 0.00 31.13 4.37
215 217 4.037446 GGGTGTTCATCAAGTGCTTAAACA 59.963 41.667 0.00 0.00 0.00 2.83
244 246 2.846193 TGTGCTCTTTTTAGCTTCGGT 58.154 42.857 0.00 0.00 43.19 4.69
466 468 1.967319 ACGTGTGAGGAAGCAACATT 58.033 45.000 0.00 0.00 0.00 2.71
482 484 4.737352 GCAACATTGACTTCTGGCTTGAAA 60.737 41.667 0.00 0.00 0.00 2.69
492 494 5.068329 ACTTCTGGCTTGAAAAAGAAAGGAG 59.932 40.000 0.00 0.00 0.00 3.69
530 534 4.566278 CCTCCTCCACAGATCAACAATGAA 60.566 45.833 0.00 0.00 39.49 2.57
584 588 3.939592 GAGCAGTTATGGAAGTTGGGTAC 59.060 47.826 0.00 0.00 0.00 3.34
620 624 8.188139 TGTATTCTTGTGGTTCTTGTTTTCTTC 58.812 33.333 0.00 0.00 0.00 2.87
638 642 3.007614 TCTTCGGCCTTGCTTTACTAGTT 59.992 43.478 0.00 0.00 0.00 2.24
666 670 8.735692 AATGTGATGATGTATTGTCATGTACA 57.264 30.769 0.00 0.00 36.49 2.90
730 737 1.230635 GCACACGGACAAGATGCAGT 61.231 55.000 0.00 0.00 36.30 4.40
779 786 0.824109 CCACCGCATCCTAAGACAGA 59.176 55.000 0.00 0.00 0.00 3.41
784 791 1.112113 GCATCCTAAGACAGACCCGA 58.888 55.000 0.00 0.00 0.00 5.14
790 797 0.599558 TAAGACAGACCCGAACACGG 59.400 55.000 0.00 0.00 45.51 4.94
791 798 1.397390 AAGACAGACCCGAACACGGT 61.397 55.000 7.83 0.00 44.59 4.83
792 799 1.068585 GACAGACCCGAACACGGTT 59.931 57.895 7.83 0.00 44.59 4.44
805 813 0.322098 CACGGTTCCATTGCCCTACA 60.322 55.000 0.00 0.00 0.00 2.74
816 824 2.949177 TGCCCTACACAAACAGACAT 57.051 45.000 0.00 0.00 0.00 3.06
821 829 4.941263 GCCCTACACAAACAGACATAATCA 59.059 41.667 0.00 0.00 0.00 2.57
826 834 8.349245 CCTACACAAACAGACATAATCAAAACA 58.651 33.333 0.00 0.00 0.00 2.83
866 874 2.279851 CGCACGGTGGAGTTGACA 60.280 61.111 10.60 0.00 0.00 3.58
870 878 1.463444 GCACGGTGGAGTTGACATAAC 59.537 52.381 10.60 0.00 0.00 1.89
871 879 2.073816 CACGGTGGAGTTGACATAACC 58.926 52.381 0.00 0.00 0.00 2.85
872 880 1.695242 ACGGTGGAGTTGACATAACCA 59.305 47.619 0.00 0.00 0.00 3.67
873 881 2.073816 CGGTGGAGTTGACATAACCAC 58.926 52.381 13.50 13.50 46.79 4.16
875 883 3.134574 GTGGAGTTGACATAACCACCA 57.865 47.619 0.00 0.00 43.29 4.17
903 911 4.570772 GGCGAGCTAAAATTGACAGACATA 59.429 41.667 0.00 0.00 0.00 2.29
1034 1050 1.822186 CGGCCACCTTAAATCCCCG 60.822 63.158 2.24 0.00 0.00 5.73
1038 1054 1.304952 CACCTTAAATCCCCGGGCA 59.695 57.895 17.73 0.00 0.00 5.36
1054 1070 2.757077 CACCTTCCCCTTCGCCTT 59.243 61.111 0.00 0.00 0.00 4.35
1552 1568 2.478890 CGTCCCGATGCTACCGAGT 61.479 63.158 0.00 0.00 0.00 4.18
1561 1577 1.180029 TGCTACCGAGTTACTGGGTC 58.820 55.000 21.86 9.95 41.53 4.46
1571 1587 2.158050 AGTTACTGGGTCCACCTTACCT 60.158 50.000 0.00 0.00 41.11 3.08
1646 1662 1.534163 CATGGCTGTTCATAGATGGCG 59.466 52.381 0.00 0.00 0.00 5.69
1660 1676 0.877649 ATGGCGCTGTCGATCATGTC 60.878 55.000 7.64 0.00 38.10 3.06
1661 1677 1.227089 GGCGCTGTCGATCATGTCT 60.227 57.895 7.64 0.00 38.10 3.41
1662 1678 0.030773 GGCGCTGTCGATCATGTCTA 59.969 55.000 7.64 0.00 38.10 2.59
1663 1679 1.403493 GCGCTGTCGATCATGTCTAG 58.597 55.000 0.00 0.00 38.10 2.43
1664 1680 1.268794 GCGCTGTCGATCATGTCTAGT 60.269 52.381 0.00 0.00 38.10 2.57
1679 1695 7.049754 TCATGTCTAGTGTAACCGTAGATGTA 58.950 38.462 0.00 0.00 37.80 2.29
1684 1700 8.331742 GTCTAGTGTAACCGTAGATGTAGTTAC 58.668 40.741 5.22 5.22 37.80 2.50
1685 1701 6.442513 AGTGTAACCGTAGATGTAGTTACC 57.557 41.667 8.85 2.36 37.80 2.85
1686 1702 5.065218 AGTGTAACCGTAGATGTAGTTACCG 59.935 44.000 8.85 0.00 37.80 4.02
1688 1704 4.622701 AACCGTAGATGTAGTTACCGAC 57.377 45.455 0.00 0.00 0.00 4.79
1696 1712 5.945310 AGATGTAGTTACCGACCCACTATA 58.055 41.667 0.00 0.00 0.00 1.31
1716 1732 8.476447 CACTATAGATTAGATGCCACTGATCAT 58.524 37.037 6.78 7.72 36.02 2.45
1743 1759 7.159322 TCTGCTAACGAGAAGAGAAATTAGT 57.841 36.000 0.00 0.00 31.70 2.24
1747 1763 9.170734 TGCTAACGAGAAGAGAAATTAGTACTA 57.829 33.333 0.00 0.00 0.00 1.82
1765 1781 4.234530 ACTATATCAGAACGTAACCGCC 57.765 45.455 0.00 0.00 37.70 6.13
1789 1806 3.472283 TGTGTTGCATTCATTTGGCTT 57.528 38.095 0.00 0.00 0.00 4.35
1806 1823 1.549203 CTTGTGCCTGCCTAACCAAT 58.451 50.000 0.00 0.00 0.00 3.16
1810 1827 2.240921 TGTGCCTGCCTAACCAATATCA 59.759 45.455 0.00 0.00 0.00 2.15
1826 1843 8.489676 ACCAATATCATCTCATCTGTACTTCT 57.510 34.615 0.00 0.00 0.00 2.85
1837 1854 6.365520 TCATCTGTACTTCTAGATGCCACTA 58.634 40.000 13.51 0.00 46.19 2.74
1838 1855 7.007116 TCATCTGTACTTCTAGATGCCACTAT 58.993 38.462 13.51 1.44 46.19 2.12
1839 1856 8.164070 TCATCTGTACTTCTAGATGCCACTATA 58.836 37.037 13.51 0.00 46.19 1.31
1840 1857 8.965819 CATCTGTACTTCTAGATGCCACTATAT 58.034 37.037 7.71 0.00 42.48 0.86
1854 1871 4.275196 GCCACTATATATCGATCCGTGCTA 59.725 45.833 0.00 0.00 0.00 3.49
1862 1879 4.848562 ATCGATCCGTGCTAACTGAATA 57.151 40.909 0.00 0.00 0.00 1.75
1863 1880 3.961182 TCGATCCGTGCTAACTGAATAC 58.039 45.455 0.00 0.00 0.00 1.89
1864 1881 2.719556 CGATCCGTGCTAACTGAATACG 59.280 50.000 0.00 0.00 34.78 3.06
1866 1883 3.581024 TCCGTGCTAACTGAATACGTT 57.419 42.857 0.00 0.00 33.28 3.99
1867 1884 3.504863 TCCGTGCTAACTGAATACGTTC 58.495 45.455 0.00 0.00 33.28 3.95
1869 1886 3.303495 CCGTGCTAACTGAATACGTTCTG 59.697 47.826 0.00 0.00 38.72 3.02
1870 1887 3.241678 CGTGCTAACTGAATACGTTCTGC 60.242 47.826 0.00 0.00 36.94 4.26
1896 1913 4.385825 TCCACCATTAGTTGACTGTTCAC 58.614 43.478 0.00 0.00 0.00 3.18
1901 1918 4.816385 CCATTAGTTGACTGTTCACTGTGT 59.184 41.667 7.79 0.00 0.00 3.72
1922 1939 3.201353 TGTGCTAGCAACACCAAGTAA 57.799 42.857 21.29 0.00 37.22 2.24
1923 1940 3.750371 TGTGCTAGCAACACCAAGTAAT 58.250 40.909 21.29 0.00 37.22 1.89
1924 1941 4.900684 TGTGCTAGCAACACCAAGTAATA 58.099 39.130 21.29 0.00 37.22 0.98
1925 1942 4.935205 TGTGCTAGCAACACCAAGTAATAG 59.065 41.667 21.29 0.00 37.22 1.73
1926 1943 4.332819 GTGCTAGCAACACCAAGTAATAGG 59.667 45.833 21.29 0.00 31.67 2.57
1927 1944 3.312697 GCTAGCAACACCAAGTAATAGGC 59.687 47.826 10.63 0.00 0.00 3.93
1932 1949 5.590259 AGCAACACCAAGTAATAGGCTAATG 59.410 40.000 0.00 0.00 0.00 1.90
1946 1963 2.817844 GGCTAATGGCTAAATTACCGGG 59.182 50.000 6.32 0.00 41.46 5.73
1955 1972 4.443881 GGCTAAATTACCGGGTGATACACT 60.444 45.833 10.66 0.00 34.40 3.55
1958 1975 7.309990 GGCTAAATTACCGGGTGATACACTATA 60.310 40.741 10.66 0.00 34.40 1.31
1959 1976 8.255905 GCTAAATTACCGGGTGATACACTATAT 58.744 37.037 10.66 0.00 34.40 0.86
1963 1980 2.565391 CCGGGTGATACACTATATGCCA 59.435 50.000 0.00 0.00 34.40 4.92
1969 1986 5.877012 GGTGATACACTATATGCCAATCTGG 59.123 44.000 0.00 0.00 36.10 3.86
1971 1988 5.547666 TGATACACTATATGCCAATCTGGGT 59.452 40.000 0.00 0.00 38.19 4.51
1977 1994 2.610438 ATGCCAATCTGGGTCAGTTT 57.390 45.000 0.00 0.00 38.19 2.66
1978 1995 3.737559 ATGCCAATCTGGGTCAGTTTA 57.262 42.857 0.00 0.00 38.19 2.01
1980 1997 4.046286 TGCCAATCTGGGTCAGTTTATT 57.954 40.909 0.00 0.00 38.19 1.40
1981 1998 5.186256 TGCCAATCTGGGTCAGTTTATTA 57.814 39.130 0.00 0.00 38.19 0.98
1989 2012 5.126061 TCTGGGTCAGTTTATTACTCGTACC 59.874 44.000 0.00 0.00 33.85 3.34
2029 2052 3.459232 TGCATCTGGTTTCGATCTAGG 57.541 47.619 0.00 0.00 0.00 3.02
2031 2054 3.450817 TGCATCTGGTTTCGATCTAGGAA 59.549 43.478 0.00 0.00 0.00 3.36
2057 2080 3.181479 GCGTGTACCATGTTCTCCTATCA 60.181 47.826 0.00 0.00 0.00 2.15
2063 2086 5.028549 ACCATGTTCTCCTATCACATCAC 57.971 43.478 0.00 0.00 0.00 3.06
2076 2099 6.097554 CCTATCACATCACTACTTTCTCCTGT 59.902 42.308 0.00 0.00 0.00 4.00
2080 2103 6.014242 TCACATCACTACTTTCTCCTGTCATT 60.014 38.462 0.00 0.00 0.00 2.57
2085 2108 3.904136 ACTTTCTCCTGTCATTTTGCG 57.096 42.857 0.00 0.00 0.00 4.85
2086 2109 3.214328 ACTTTCTCCTGTCATTTTGCGT 58.786 40.909 0.00 0.00 0.00 5.24
2087 2110 3.003689 ACTTTCTCCTGTCATTTTGCGTG 59.996 43.478 0.00 0.00 0.00 5.34
2206 2231 1.004560 ACTGGAGTGCACCATGTCG 60.005 57.895 14.63 0.00 39.34 4.35
2249 2274 3.266772 TGCTTAGTTGGTCCATGGAGAAT 59.733 43.478 16.81 6.29 0.00 2.40
2347 2372 9.967346 GTAATGCATTACTCTACTATGAACTGA 57.033 33.333 32.84 2.43 39.53 3.41
2421 2446 2.380064 AGGCAAATGGAGTCAACCAA 57.620 45.000 0.00 0.00 43.47 3.67
2456 2481 2.203337 TCACTGCTGTTGGTGGCC 60.203 61.111 0.00 0.00 34.57 5.36
2473 2498 0.955919 GCCGGAGCAAAGTAGCAACT 60.956 55.000 5.05 0.00 39.53 3.16
2477 2502 2.772287 GGAGCAAAGTAGCAACTGACT 58.228 47.619 0.00 0.00 35.62 3.41
2478 2503 3.614150 CGGAGCAAAGTAGCAACTGACTA 60.614 47.826 0.00 0.00 35.62 2.59
2493 2518 3.692101 ACTGACTATCGAGTTGAGGTGAG 59.308 47.826 0.00 2.69 35.45 3.51
2495 2520 3.018149 GACTATCGAGTTGAGGTGAGGT 58.982 50.000 0.00 0.00 35.45 3.85
2502 2527 0.035458 GTTGAGGTGAGGTGACCCTG 59.965 60.000 0.00 0.00 42.86 4.45
2508 2533 0.108138 GTGAGGTGACCCTGATTCCG 60.108 60.000 0.00 0.00 42.86 4.30
2513 2538 1.583054 GTGACCCTGATTCCGCATAC 58.417 55.000 0.00 0.00 0.00 2.39
2521 2546 4.446371 CCTGATTCCGCATACTTTCTCTT 58.554 43.478 0.00 0.00 0.00 2.85
2522 2547 4.509600 CCTGATTCCGCATACTTTCTCTTC 59.490 45.833 0.00 0.00 0.00 2.87
2534 2559 7.067494 GCATACTTTCTCTTCTCTCTCTCTCTT 59.933 40.741 0.00 0.00 0.00 2.85
2537 2562 6.149474 ACTTTCTCTTCTCTCTCTCTCTTTCG 59.851 42.308 0.00 0.00 0.00 3.46
2538 2563 4.513442 TCTCTTCTCTCTCTCTCTTTCGG 58.487 47.826 0.00 0.00 0.00 4.30
2579 2610 3.052082 CCTGCAGAACCGCTGTGG 61.052 66.667 17.39 5.54 46.62 4.17
2609 2640 3.436243 ACCACAACCAGTTTGAAGGAAA 58.564 40.909 2.01 0.00 38.73 3.13
2629 2660 1.672356 CGGAAGAAGGCTGTGGTGG 60.672 63.158 0.00 0.00 0.00 4.61
2631 2662 1.228245 GAAGAAGGCTGTGGTGGCA 60.228 57.895 0.00 0.00 34.73 4.92
2632 2663 1.228367 AAGAAGGCTGTGGTGGCAG 60.228 57.895 0.00 0.00 39.37 4.85
2658 2689 1.811266 CCGCATCAGTGAACTCCCG 60.811 63.158 0.00 0.00 0.00 5.14
2661 2692 0.741221 GCATCAGTGAACTCCCGGAC 60.741 60.000 0.73 0.00 0.00 4.79
2698 2729 1.672356 CTCTCCTTGTTGCCGGTGG 60.672 63.158 1.90 0.00 0.00 4.61
2760 2791 0.912486 ACCTCTGGAAGCACATACCC 59.088 55.000 0.00 0.00 0.00 3.69
2802 2833 3.545703 CAACAAGAAGAGGTTCACCAGT 58.454 45.455 0.00 0.00 38.89 4.00
2943 2974 5.417580 TGAACCCTTGCCAAACATATACTTC 59.582 40.000 0.00 0.00 0.00 3.01
2949 2980 6.038161 CCTTGCCAAACATATACTTCGATTCA 59.962 38.462 0.00 0.00 0.00 2.57
2958 2989 7.326454 ACATATACTTCGATTCATGGATCCAG 58.674 38.462 21.33 12.25 0.00 3.86
2961 2992 4.950050 ACTTCGATTCATGGATCCAGTAC 58.050 43.478 21.33 8.59 0.00 2.73
2982 3013 2.679837 CGCTCTATTGTGCAAGGTTCAT 59.320 45.455 0.00 0.00 33.37 2.57
2994 3025 4.060205 GCAAGGTTCATGTGCTCAAAATT 58.940 39.130 0.00 0.00 35.36 1.82
2995 3026 4.084223 GCAAGGTTCATGTGCTCAAAATTG 60.084 41.667 0.00 0.00 35.36 2.32
3015 3046 1.221566 CGGTGATGATGTGGGAGCA 59.778 57.895 0.00 0.00 0.00 4.26
3021 3052 2.040145 TGATGATGTGGGAGCAGAAACA 59.960 45.455 0.00 0.00 0.00 2.83
3117 3148 1.656095 GTCGATTTCTCAAGCTGTCCG 59.344 52.381 0.00 0.00 0.00 4.79
3142 3173 5.240891 TGTTAGAAGAACTGAAGATGCAGG 58.759 41.667 0.00 0.00 40.20 4.85
3144 3175 4.630644 AGAAGAACTGAAGATGCAGGAA 57.369 40.909 0.00 0.00 40.20 3.36
3223 3254 3.435186 GCAACTTCCCTGAGGCGC 61.435 66.667 0.00 0.00 0.00 6.53
3380 3411 1.458486 GGGGTTGTGGTGGTGATCA 59.542 57.895 0.00 0.00 0.00 2.92
3411 3442 2.308570 AGGTTGTCATGGTTATCCTGCA 59.691 45.455 0.00 0.00 34.23 4.41
3429 3460 4.202161 CCTGCAGGGAGTTATAGTAGTGTG 60.202 50.000 26.14 0.00 37.23 3.82
3614 3647 9.791820 AAACGCATAATTAAATAACTTGGTACC 57.208 29.630 4.43 4.43 0.00 3.34
3631 3664 9.856162 ACTTGGTACCTTCTTTAATTAGTTTCA 57.144 29.630 14.36 0.00 0.00 2.69
3758 3793 8.819643 AGACTGAGTACTTGTCAATTTCTTAC 57.180 34.615 23.04 0.00 33.56 2.34
3799 3837 9.203421 CCAGAAAAACTTAAACATAATGGGTTC 57.797 33.333 0.00 0.00 0.00 3.62
4064 4110 5.606348 ATCTGCCCAGAGTTTCTAGTAAG 57.394 43.478 4.16 0.00 41.33 2.34
4162 4216 3.281158 GGATTTGGAATTTTGCCCCATG 58.719 45.455 0.00 0.00 0.00 3.66
4313 4367 5.413309 AGATTTTCTGGACCACTCTAGTG 57.587 43.478 3.02 3.02 45.23 2.74
4536 4590 6.071784 TGACTAGAAATGGCGTACTTACTGAA 60.072 38.462 0.00 0.00 0.00 3.02
4591 4672 6.483640 AGAAGGTTGTAAGTTAACTCTTGCTG 59.516 38.462 8.95 0.00 32.69 4.41
4600 4681 5.671493 AGTTAACTCTTGCTGTTGTACACT 58.329 37.500 1.12 0.00 0.00 3.55
4617 4698 5.476945 TGTACACTAGTTGCTCTCATCTTCA 59.523 40.000 0.00 0.00 0.00 3.02
4618 4699 5.674052 ACACTAGTTGCTCTCATCTTCAT 57.326 39.130 0.00 0.00 0.00 2.57
4619 4700 6.782082 ACACTAGTTGCTCTCATCTTCATA 57.218 37.500 0.00 0.00 0.00 2.15
4620 4701 7.358770 ACACTAGTTGCTCTCATCTTCATAT 57.641 36.000 0.00 0.00 0.00 1.78
4621 4702 7.432869 ACACTAGTTGCTCTCATCTTCATATC 58.567 38.462 0.00 0.00 0.00 1.63
4622 4703 6.581919 CACTAGTTGCTCTCATCTTCATATCG 59.418 42.308 0.00 0.00 0.00 2.92
4623 4704 5.781210 AGTTGCTCTCATCTTCATATCGA 57.219 39.130 0.00 0.00 0.00 3.59
4624 4705 5.771469 AGTTGCTCTCATCTTCATATCGAG 58.229 41.667 0.00 0.00 0.00 4.04
4625 4706 5.301551 AGTTGCTCTCATCTTCATATCGAGT 59.698 40.000 0.00 0.00 0.00 4.18
4626 4707 5.781210 TGCTCTCATCTTCATATCGAGTT 57.219 39.130 0.00 0.00 0.00 3.01
4627 4708 6.154203 TGCTCTCATCTTCATATCGAGTTT 57.846 37.500 0.00 0.00 0.00 2.66
4628 4709 7.277174 TGCTCTCATCTTCATATCGAGTTTA 57.723 36.000 0.00 0.00 0.00 2.01
4629 4710 7.142021 TGCTCTCATCTTCATATCGAGTTTAC 58.858 38.462 0.00 0.00 0.00 2.01
4630 4711 7.013750 TGCTCTCATCTTCATATCGAGTTTACT 59.986 37.037 0.00 0.00 0.00 2.24
4631 4712 7.865385 GCTCTCATCTTCATATCGAGTTTACTT 59.135 37.037 0.00 0.00 0.00 2.24
4632 4713 9.743057 CTCTCATCTTCATATCGAGTTTACTTT 57.257 33.333 0.00 0.00 0.00 2.66
4686 4767 2.706339 ATGCTCCTCTTACTGGCTTG 57.294 50.000 0.00 0.00 0.00 4.01
4723 4804 9.220767 AGAATCTCCTATTGTTTACTGTTGTTC 57.779 33.333 0.00 0.00 0.00 3.18
4850 4932 8.292448 TGAAAGCTGAGTCTTTTGAATATTGAC 58.708 33.333 0.00 0.00 36.50 3.18
4856 4938 9.140286 CTGAGTCTTTTGAATATTGACGTCTTA 57.860 33.333 17.92 9.06 33.40 2.10
4861 4943 9.321562 TCTTTTGAATATTGACGTCTTATACCC 57.678 33.333 17.92 9.86 0.00 3.69
4877 4965 7.674772 GTCTTATACCCCTGGAAGTCTATGTAT 59.325 40.741 0.00 0.00 0.00 2.29
4926 5014 5.184287 GCTTATCTCCTGGTCTATGTACTCC 59.816 48.000 0.00 0.00 0.00 3.85
4929 5017 2.879646 CTCCTGGTCTATGTACTCCGAC 59.120 54.545 0.00 0.00 0.00 4.79
4932 5020 3.637229 CCTGGTCTATGTACTCCGACAAT 59.363 47.826 0.00 0.00 31.83 2.71
4942 5030 9.261180 CTATGTACTCCGACAATTACATTCATT 57.739 33.333 0.00 0.00 36.69 2.57
5106 5196 0.253630 ACCTAGGGCCTTTGATCCCA 60.254 55.000 13.45 0.00 45.07 4.37
5134 5224 2.161609 CCGGTGAAGACTAAATTGGTGC 59.838 50.000 0.00 0.00 0.00 5.01
5138 5228 4.453136 GGTGAAGACTAAATTGGTGCGTTA 59.547 41.667 0.00 0.00 0.00 3.18
5140 5230 4.693566 TGAAGACTAAATTGGTGCGTTAGG 59.306 41.667 0.00 0.00 0.00 2.69
5159 5251 4.373156 AGGCCAGTGATAGAAGTGTTTT 57.627 40.909 5.01 0.00 0.00 2.43
5190 5282 4.561105 TGTGTTGTTTTGTCCAAACCTTC 58.439 39.130 0.00 0.00 43.87 3.46
5192 5284 4.625311 GTGTTGTTTTGTCCAAACCTTCTG 59.375 41.667 0.00 0.00 43.87 3.02
5240 5332 4.404073 TGGTACAACTGAGCAAATGGTTTT 59.596 37.500 0.00 0.00 31.92 2.43
5241 5333 4.744631 GGTACAACTGAGCAAATGGTTTTG 59.255 41.667 0.00 0.00 44.18 2.44
5261 5354 7.650504 GGTTTTGAGTTGGGTAGTATGTTTTTC 59.349 37.037 0.00 0.00 0.00 2.29
5295 5388 5.186198 AGTTGGGCAGTATGTAAAGATGTC 58.814 41.667 0.00 0.00 39.31 3.06
5301 5394 5.463724 GGCAGTATGTAAAGATGTCACTAGC 59.536 44.000 0.00 0.00 39.31 3.42
5305 5398 7.433719 CAGTATGTAAAGATGTCACTAGCACTC 59.566 40.741 0.00 0.00 0.00 3.51
5306 5399 5.984695 TGTAAAGATGTCACTAGCACTCT 57.015 39.130 0.00 0.00 0.00 3.24
5343 5436 5.118664 CAGTAATGAAAATCGTGTCGTCAGT 59.881 40.000 0.00 0.00 0.00 3.41
5359 5452 3.745975 CGTCAGTACCTTGAGCATTTCAA 59.254 43.478 0.00 0.00 43.40 2.69
5362 5455 6.568462 CGTCAGTACCTTGAGCATTTCAAAAT 60.568 38.462 0.00 0.00 44.84 1.82
5363 5456 6.583806 GTCAGTACCTTGAGCATTTCAAAATG 59.416 38.462 10.44 10.44 44.84 2.32
5364 5457 6.265196 TCAGTACCTTGAGCATTTCAAAATGT 59.735 34.615 14.97 4.44 44.84 2.71
5460 5558 4.423732 ACACTTGTTGAACATTGAACTGC 58.576 39.130 12.72 0.00 0.00 4.40
5485 5583 4.340617 TCTCCACTTTTGAAAAGTGTGGT 58.659 39.130 35.08 10.93 44.52 4.16
5501 5599 4.539870 GTGTGGTGAACATCATCAAACTG 58.460 43.478 6.67 0.00 41.43 3.16
5544 5642 3.648339 CAGGCTTGCAGTTATGTGTTT 57.352 42.857 0.00 0.00 0.00 2.83
5545 5643 3.981211 CAGGCTTGCAGTTATGTGTTTT 58.019 40.909 0.00 0.00 0.00 2.43
5546 5644 4.370917 CAGGCTTGCAGTTATGTGTTTTT 58.629 39.130 0.00 0.00 0.00 1.94
5547 5645 5.527951 CAGGCTTGCAGTTATGTGTTTTTA 58.472 37.500 0.00 0.00 0.00 1.52
5548 5646 5.630680 CAGGCTTGCAGTTATGTGTTTTTAG 59.369 40.000 0.00 0.00 0.00 1.85
5549 5647 5.301805 AGGCTTGCAGTTATGTGTTTTTAGT 59.698 36.000 0.00 0.00 0.00 2.24
5550 5648 5.402270 GGCTTGCAGTTATGTGTTTTTAGTG 59.598 40.000 0.00 0.00 0.00 2.74
5551 5649 5.402270 GCTTGCAGTTATGTGTTTTTAGTGG 59.598 40.000 0.00 0.00 0.00 4.00
5552 5650 4.865776 TGCAGTTATGTGTTTTTAGTGGC 58.134 39.130 0.00 0.00 0.00 5.01
5553 5651 4.234574 GCAGTTATGTGTTTTTAGTGGCC 58.765 43.478 0.00 0.00 0.00 5.36
5554 5652 4.022329 GCAGTTATGTGTTTTTAGTGGCCT 60.022 41.667 3.32 0.00 0.00 5.19
5555 5653 5.508994 GCAGTTATGTGTTTTTAGTGGCCTT 60.509 40.000 3.32 0.00 0.00 4.35
5556 5654 6.149633 CAGTTATGTGTTTTTAGTGGCCTTC 58.850 40.000 3.32 0.00 0.00 3.46
5557 5655 6.016276 CAGTTATGTGTTTTTAGTGGCCTTCT 60.016 38.462 3.32 5.19 0.00 2.85
5558 5656 4.853924 ATGTGTTTTTAGTGGCCTTCTG 57.146 40.909 3.32 0.00 0.00 3.02
5559 5657 3.892284 TGTGTTTTTAGTGGCCTTCTGA 58.108 40.909 3.32 0.00 0.00 3.27
5560 5658 3.882888 TGTGTTTTTAGTGGCCTTCTGAG 59.117 43.478 3.32 0.00 0.00 3.35
5561 5659 4.134563 GTGTTTTTAGTGGCCTTCTGAGA 58.865 43.478 3.32 0.00 0.00 3.27
5562 5660 4.578928 GTGTTTTTAGTGGCCTTCTGAGAA 59.421 41.667 3.32 0.00 0.00 2.87
5563 5661 5.067283 GTGTTTTTAGTGGCCTTCTGAGAAA 59.933 40.000 3.32 3.90 0.00 2.52
5564 5662 5.833131 TGTTTTTAGTGGCCTTCTGAGAAAT 59.167 36.000 3.32 0.00 0.00 2.17
5565 5663 5.964958 TTTTAGTGGCCTTCTGAGAAATG 57.035 39.130 3.32 0.00 0.00 2.32
5566 5664 4.908601 TTAGTGGCCTTCTGAGAAATGA 57.091 40.909 3.32 0.00 0.00 2.57
5567 5665 3.795688 AGTGGCCTTCTGAGAAATGAA 57.204 42.857 3.32 0.00 0.00 2.57
5568 5666 3.683802 AGTGGCCTTCTGAGAAATGAAG 58.316 45.455 3.32 0.00 39.32 3.02
5569 5667 3.328931 AGTGGCCTTCTGAGAAATGAAGA 59.671 43.478 3.32 0.00 41.38 2.87
5570 5668 3.688673 GTGGCCTTCTGAGAAATGAAGAG 59.311 47.826 3.32 0.00 41.38 2.85
5571 5669 3.328931 TGGCCTTCTGAGAAATGAAGAGT 59.671 43.478 3.32 0.00 41.38 3.24
5572 5670 3.688673 GGCCTTCTGAGAAATGAAGAGTG 59.311 47.826 0.00 0.00 41.38 3.51
5573 5671 4.564406 GGCCTTCTGAGAAATGAAGAGTGA 60.564 45.833 0.00 0.00 41.38 3.41
5574 5672 5.184711 GCCTTCTGAGAAATGAAGAGTGAT 58.815 41.667 0.00 0.00 41.38 3.06
5575 5673 6.344500 GCCTTCTGAGAAATGAAGAGTGATA 58.656 40.000 0.00 0.00 41.38 2.15
5576 5674 6.479660 GCCTTCTGAGAAATGAAGAGTGATAG 59.520 42.308 0.00 0.00 41.38 2.08
5577 5675 7.632462 GCCTTCTGAGAAATGAAGAGTGATAGA 60.632 40.741 0.00 0.00 41.38 1.98
5578 5676 7.922278 CCTTCTGAGAAATGAAGAGTGATAGAG 59.078 40.741 0.00 0.00 41.38 2.43
5579 5677 7.345422 TCTGAGAAATGAAGAGTGATAGAGG 57.655 40.000 0.00 0.00 0.00 3.69
5580 5678 5.911752 TGAGAAATGAAGAGTGATAGAGGC 58.088 41.667 0.00 0.00 0.00 4.70
5581 5679 4.942852 AGAAATGAAGAGTGATAGAGGCG 58.057 43.478 0.00 0.00 0.00 5.52
5582 5680 4.404073 AGAAATGAAGAGTGATAGAGGCGT 59.596 41.667 0.00 0.00 0.00 5.68
5583 5681 4.744795 AATGAAGAGTGATAGAGGCGTT 57.255 40.909 0.00 0.00 0.00 4.84
5584 5682 5.854010 AATGAAGAGTGATAGAGGCGTTA 57.146 39.130 0.00 0.00 0.00 3.18
5603 5701 5.790495 GCGTTAGATGTCATTGTCTTTGTTC 59.210 40.000 0.00 0.00 0.00 3.18
5623 5721 2.368548 TCAACCTAGAGCAACAGAGCAA 59.631 45.455 0.00 0.00 36.85 3.91
5625 5723 2.251818 ACCTAGAGCAACAGAGCAAGA 58.748 47.619 0.00 0.00 36.85 3.02
5626 5724 2.233431 ACCTAGAGCAACAGAGCAAGAG 59.767 50.000 0.00 0.00 36.85 2.85
5628 5726 3.445450 CCTAGAGCAACAGAGCAAGAGTA 59.555 47.826 0.00 0.00 36.85 2.59
5629 5727 3.311486 AGAGCAACAGAGCAAGAGTAC 57.689 47.619 0.00 0.00 36.85 2.73
5630 5728 2.896685 AGAGCAACAGAGCAAGAGTACT 59.103 45.455 0.00 0.00 36.85 2.73
5631 5729 3.323403 AGAGCAACAGAGCAAGAGTACTT 59.677 43.478 0.00 0.00 36.85 2.24
5632 5730 4.061596 GAGCAACAGAGCAAGAGTACTTT 58.938 43.478 0.00 0.00 36.85 2.66
5633 5731 5.011125 AGAGCAACAGAGCAAGAGTACTTTA 59.989 40.000 0.00 0.00 36.85 1.85
5634 5732 5.799213 AGCAACAGAGCAAGAGTACTTTAT 58.201 37.500 0.00 0.00 36.85 1.40
5635 5733 5.872070 AGCAACAGAGCAAGAGTACTTTATC 59.128 40.000 0.00 0.00 36.85 1.75
5636 5734 5.064071 GCAACAGAGCAAGAGTACTTTATCC 59.936 44.000 0.00 0.00 33.70 2.59
5637 5735 6.402222 CAACAGAGCAAGAGTACTTTATCCT 58.598 40.000 0.00 0.00 33.70 3.24
5638 5736 6.215495 ACAGAGCAAGAGTACTTTATCCTC 57.785 41.667 0.00 0.44 33.70 3.71
5639 5737 5.717178 ACAGAGCAAGAGTACTTTATCCTCA 59.283 40.000 0.00 0.00 33.70 3.86
5640 5738 6.211584 ACAGAGCAAGAGTACTTTATCCTCAA 59.788 38.462 0.00 0.00 33.70 3.02
5641 5739 7.099764 CAGAGCAAGAGTACTTTATCCTCAAA 58.900 38.462 0.00 0.00 33.70 2.69
5642 5740 7.768120 CAGAGCAAGAGTACTTTATCCTCAAAT 59.232 37.037 0.00 0.00 33.70 2.32
5643 5741 7.768120 AGAGCAAGAGTACTTTATCCTCAAATG 59.232 37.037 0.00 0.00 33.70 2.32
5644 5742 7.624549 AGCAAGAGTACTTTATCCTCAAATGA 58.375 34.615 0.00 0.00 33.70 2.57
5645 5743 7.550906 AGCAAGAGTACTTTATCCTCAAATGAC 59.449 37.037 0.00 0.00 33.70 3.06
5646 5744 7.334421 GCAAGAGTACTTTATCCTCAAATGACA 59.666 37.037 0.00 0.00 33.70 3.58
5684 5782 4.100963 TCTGCCTAGTTTCACAGAAGAACA 59.899 41.667 0.00 0.00 36.27 3.18
5706 5804 3.941483 ACAAACTGAGGAATAAGATGGCG 59.059 43.478 0.00 0.00 0.00 5.69
5708 5806 1.143305 CTGAGGAATAAGATGGCGCG 58.857 55.000 0.00 0.00 0.00 6.86
5709 5807 0.249868 TGAGGAATAAGATGGCGCGG 60.250 55.000 8.83 0.00 0.00 6.46
5710 5808 0.951040 GAGGAATAAGATGGCGCGGG 60.951 60.000 8.83 0.00 0.00 6.13
5711 5809 1.070786 GGAATAAGATGGCGCGGGA 59.929 57.895 8.83 0.00 0.00 5.14
5712 5810 0.951040 GGAATAAGATGGCGCGGGAG 60.951 60.000 8.83 0.00 0.00 4.30
5713 5811 0.951040 GAATAAGATGGCGCGGGAGG 60.951 60.000 8.83 0.00 0.00 4.30
5714 5812 2.397413 AATAAGATGGCGCGGGAGGG 62.397 60.000 8.83 0.00 46.83 4.30
5717 5815 3.857038 GATGGCGCGGGAGGGTTA 61.857 66.667 8.83 0.00 45.69 2.85
5718 5816 4.171103 ATGGCGCGGGAGGGTTAC 62.171 66.667 8.83 0.00 45.69 2.50
5723 5821 2.582978 GCGGGAGGGTTACCAGTC 59.417 66.667 2.98 0.00 40.13 3.51
5725 5823 1.611261 CGGGAGGGTTACCAGTCCA 60.611 63.158 19.63 0.00 40.13 4.02
5726 5824 1.896122 CGGGAGGGTTACCAGTCCAC 61.896 65.000 19.63 10.63 40.13 4.02
5727 5825 1.595357 GGAGGGTTACCAGTCCACG 59.405 63.158 14.91 0.00 40.13 4.94
5728 5826 0.901580 GGAGGGTTACCAGTCCACGA 60.902 60.000 14.91 0.00 40.13 4.35
5792 6112 1.279271 TCTTAGGCTTTCCTCCAGCAC 59.721 52.381 0.00 0.00 43.06 4.40
5806 6126 2.914097 GCACCCAACTGCTTGGCT 60.914 61.111 0.00 0.00 45.32 4.75
5835 6155 8.498054 CTGATTACAGGTGTCATAGATTTTGT 57.502 34.615 0.00 0.00 40.14 2.83
5859 6179 1.299850 CCTGCGACTGTGAACACGA 60.300 57.895 0.00 0.00 0.00 4.35
5864 6184 0.590481 CGACTGTGAACACGACACGA 60.590 55.000 0.00 0.00 40.61 4.35
5894 6214 5.991933 ACTGCTCATCTTGACCGATATAT 57.008 39.130 0.00 0.00 0.00 0.86
5926 6246 8.085720 CTCTTCATGGAGCTAGTTCATTTATG 57.914 38.462 8.96 7.30 0.00 1.90
5935 6393 9.638239 GGAGCTAGTTCATTTATGATCTTCTAG 57.362 37.037 8.96 10.65 37.80 2.43
5980 6438 1.361668 GCGATGTCGTCTGCACCATT 61.362 55.000 4.20 0.00 42.22 3.16
5991 6449 2.129785 GCACCATTGAGCCCCATCC 61.130 63.158 0.00 0.00 0.00 3.51
6048 6506 2.820197 GGAGAAAAACAGGGTAGCAAGG 59.180 50.000 0.00 0.00 0.00 3.61
6176 6634 3.627395 TCCCTGATCAATACAAACGCT 57.373 42.857 0.00 0.00 0.00 5.07
6215 6673 7.709149 ATGGAGCCCATTAAAGATAATAAGC 57.291 36.000 1.21 0.00 42.23 3.09
6221 6679 6.515035 GCCCATTAAAGATAATAAGCGTTGCT 60.515 38.462 0.00 0.00 32.70 3.91
6234 6692 4.846779 AGCGTTGCTTTAGATTTCCAAA 57.153 36.364 0.00 0.00 33.89 3.28
6241 6699 5.851720 TGCTTTAGATTTCCAAATTGCACA 58.148 33.333 0.00 0.00 0.00 4.57
6269 6727 7.180408 ACACTTAGCAGGTCCTTTAGATTTAGA 59.820 37.037 0.00 0.00 0.00 2.10
6270 6728 8.041323 CACTTAGCAGGTCCTTTAGATTTAGAA 58.959 37.037 0.00 0.00 0.00 2.10
6310 6768 0.465460 GTCCTCTGCAAACACCACCA 60.465 55.000 0.00 0.00 0.00 4.17
6315 6773 0.381801 CTGCAAACACCACCACAGAC 59.618 55.000 0.00 0.00 0.00 3.51
6316 6774 0.322906 TGCAAACACCACCACAGACA 60.323 50.000 0.00 0.00 0.00 3.41
6317 6775 0.814457 GCAAACACCACCACAGACAA 59.186 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 2.545742 CCGCCATTCATGTATCTGTCGA 60.546 50.000 0.00 0.00 0.00 4.20
113 115 3.010027 TCACACTTAATGAGGGGCAATGA 59.990 43.478 0.00 0.00 30.95 2.57
188 190 2.040813 AGCACTTGATGAACACCCATCT 59.959 45.455 0.00 0.00 42.49 2.90
215 217 4.402474 GCTAAAAAGAGCACATACCCCATT 59.598 41.667 0.00 0.00 42.36 3.16
244 246 4.537135 AGTCTAATCCGAGAGCACAAAA 57.463 40.909 0.00 0.00 0.00 2.44
363 365 4.378459 GCTAGCTAAAAGTGCACGAACATT 60.378 41.667 12.01 6.08 0.00 2.71
466 468 5.163519 CCTTTCTTTTTCAAGCCAGAAGTCA 60.164 40.000 0.00 0.00 0.00 3.41
482 484 1.318576 CGTTGCACCCTCCTTTCTTT 58.681 50.000 0.00 0.00 0.00 2.52
492 494 4.681978 AGGCTCGACGTTGCACCC 62.682 66.667 14.89 4.66 0.00 4.61
530 534 1.131638 TTAGGGCCTTCTCGATGCAT 58.868 50.000 13.45 0.00 0.00 3.96
584 588 9.014297 AGAACCACAAGAATACATTTAAGAAGG 57.986 33.333 0.00 0.00 0.00 3.46
620 624 5.616488 TTTTAACTAGTAAAGCAAGGCCG 57.384 39.130 0.00 0.00 33.22 6.13
784 791 0.402504 TAGGGCAATGGAACCGTGTT 59.597 50.000 0.00 0.00 0.00 3.32
790 797 2.625790 TGTTTGTGTAGGGCAATGGAAC 59.374 45.455 0.00 0.00 0.00 3.62
791 798 2.890311 CTGTTTGTGTAGGGCAATGGAA 59.110 45.455 0.00 0.00 0.00 3.53
792 799 2.107378 TCTGTTTGTGTAGGGCAATGGA 59.893 45.455 0.00 0.00 0.00 3.41
816 824 6.973474 ACGGATGTTCGTTTTTGTTTTGATTA 59.027 30.769 0.00 0.00 40.85 1.75
866 874 2.437716 CGCCGCCTTGGTGGTTAT 60.438 61.111 19.12 0.00 44.97 1.89
872 880 2.741486 TTTTAGCTCGCCGCCTTGGT 62.741 55.000 0.00 0.00 41.21 3.67
873 881 1.376609 ATTTTAGCTCGCCGCCTTGG 61.377 55.000 0.00 0.00 40.39 3.61
874 882 0.451783 AATTTTAGCTCGCCGCCTTG 59.548 50.000 0.00 0.00 40.39 3.61
875 883 0.451783 CAATTTTAGCTCGCCGCCTT 59.548 50.000 0.00 0.00 40.39 4.35
886 894 5.006746 GGACCGCTATGTCTGTCAATTTTAG 59.993 44.000 0.00 0.00 35.54 1.85
888 896 3.689649 GGACCGCTATGTCTGTCAATTTT 59.310 43.478 0.00 0.00 35.54 1.82
889 897 3.270877 GGACCGCTATGTCTGTCAATTT 58.729 45.455 0.00 0.00 35.54 1.82
955 968 2.514516 ATTTGGCGGGGAAGGGGAAG 62.515 60.000 0.00 0.00 0.00 3.46
1016 1032 1.822186 CGGGGATTTAAGGTGGCCG 60.822 63.158 0.00 0.00 0.00 6.13
1038 1054 2.603652 GGAAGGCGAAGGGGAAGGT 61.604 63.158 0.00 0.00 0.00 3.50
1042 1058 2.687566 GAGGGAAGGCGAAGGGGA 60.688 66.667 0.00 0.00 0.00 4.81
1491 1507 1.376609 GGCTTGACGATCCGCCATTT 61.377 55.000 0.00 0.00 42.06 2.32
1494 1510 4.467084 GGGCTTGACGATCCGCCA 62.467 66.667 11.33 0.00 44.23 5.69
1546 1562 1.190178 GGTGGACCCAGTAACTCGGT 61.190 60.000 0.00 0.00 0.00 4.69
1552 1568 2.543635 GAGGTAAGGTGGACCCAGTAA 58.456 52.381 0.00 0.00 37.73 2.24
1594 1610 2.752640 TCGAATCCTCACCGCGGA 60.753 61.111 35.90 9.64 34.52 5.54
1608 1624 1.203237 TGGAATGGAGGATTGCTCGA 58.797 50.000 0.00 0.00 33.62 4.04
1609 1625 1.878088 CATGGAATGGAGGATTGCTCG 59.122 52.381 0.00 0.00 41.79 5.03
1636 1652 1.336240 TGATCGACAGCGCCATCTATG 60.336 52.381 2.29 0.00 37.46 2.23
1646 1662 3.428746 ACACTAGACATGATCGACAGC 57.571 47.619 0.00 0.00 0.00 4.40
1660 1676 7.517417 CGGTAACTACATCTACGGTTACACTAG 60.517 44.444 14.03 0.00 43.05 2.57
1661 1677 6.257849 CGGTAACTACATCTACGGTTACACTA 59.742 42.308 14.03 0.00 43.05 2.74
1662 1678 5.065218 CGGTAACTACATCTACGGTTACACT 59.935 44.000 14.03 0.00 43.05 3.55
1663 1679 5.064707 TCGGTAACTACATCTACGGTTACAC 59.935 44.000 14.03 5.67 43.05 2.90
1664 1680 5.064707 GTCGGTAACTACATCTACGGTTACA 59.935 44.000 14.03 0.00 43.05 2.41
1679 1695 6.845908 TCTAATCTATAGTGGGTCGGTAACT 58.154 40.000 0.00 0.00 0.00 2.24
1684 1700 4.142138 GGCATCTAATCTATAGTGGGTCGG 60.142 50.000 0.00 0.00 0.00 4.79
1685 1701 4.462834 TGGCATCTAATCTATAGTGGGTCG 59.537 45.833 0.00 0.00 0.00 4.79
1686 1702 5.482175 AGTGGCATCTAATCTATAGTGGGTC 59.518 44.000 0.00 0.00 0.00 4.46
1688 1704 5.481824 TCAGTGGCATCTAATCTATAGTGGG 59.518 44.000 0.00 0.00 0.00 4.61
1696 1712 8.041919 CAGAATATGATCAGTGGCATCTAATCT 58.958 37.037 0.09 0.00 0.00 2.40
1716 1732 9.737427 CTAATTTCTCTTCTCGTTAGCAGAATA 57.263 33.333 0.00 0.00 0.00 1.75
1743 1759 4.083855 CGGCGGTTACGTTCTGATATAGTA 60.084 45.833 0.00 0.00 43.45 1.82
1747 1763 1.269413 CCGGCGGTTACGTTCTGATAT 60.269 52.381 19.97 0.00 43.45 1.63
1748 1764 0.101040 CCGGCGGTTACGTTCTGATA 59.899 55.000 19.97 0.00 43.45 2.15
1765 1781 2.475864 CCAAATGAATGCAACACAACCG 59.524 45.455 0.00 0.00 0.00 4.44
1789 1806 2.240921 TGATATTGGTTAGGCAGGCACA 59.759 45.455 0.00 0.00 0.00 4.57
1824 1841 6.651225 CGGATCGATATATAGTGGCATCTAGA 59.349 42.308 0.00 0.00 0.00 2.43
1825 1842 6.428465 ACGGATCGATATATAGTGGCATCTAG 59.572 42.308 0.00 0.00 0.00 2.43
1826 1843 6.204882 CACGGATCGATATATAGTGGCATCTA 59.795 42.308 0.00 0.00 0.00 1.98
1837 1854 6.510879 TTCAGTTAGCACGGATCGATATAT 57.489 37.500 0.00 0.00 0.00 0.86
1838 1855 5.952526 TTCAGTTAGCACGGATCGATATA 57.047 39.130 0.00 0.00 0.00 0.86
1839 1856 4.848562 TTCAGTTAGCACGGATCGATAT 57.151 40.909 0.00 0.00 0.00 1.63
1840 1857 4.848562 ATTCAGTTAGCACGGATCGATA 57.151 40.909 0.00 0.00 0.00 2.92
1841 1858 3.735237 ATTCAGTTAGCACGGATCGAT 57.265 42.857 0.00 0.00 0.00 3.59
1854 1871 2.851263 TGGGCAGAACGTATTCAGTT 57.149 45.000 0.00 0.00 37.29 3.16
1862 1879 1.852157 ATGGTGGATGGGCAGAACGT 61.852 55.000 0.00 0.00 0.00 3.99
1863 1880 0.680921 AATGGTGGATGGGCAGAACG 60.681 55.000 0.00 0.00 0.00 3.95
1864 1881 2.301346 CTAATGGTGGATGGGCAGAAC 58.699 52.381 0.00 0.00 0.00 3.01
1866 1883 1.595311 ACTAATGGTGGATGGGCAGA 58.405 50.000 0.00 0.00 0.00 4.26
1867 1884 2.026641 CAACTAATGGTGGATGGGCAG 58.973 52.381 0.00 0.00 0.00 4.85
1869 1886 2.024414 GTCAACTAATGGTGGATGGGC 58.976 52.381 0.00 0.00 29.56 5.36
1870 1887 3.282021 CAGTCAACTAATGGTGGATGGG 58.718 50.000 0.00 0.00 29.56 4.00
1901 1918 2.051334 ACTTGGTGTTGCTAGCACAA 57.949 45.000 19.17 16.79 38.51 3.33
1915 1932 8.409358 AATTTAGCCATTAGCCTATTACTTGG 57.591 34.615 0.00 0.00 45.47 3.61
1922 1939 5.497474 CCGGTAATTTAGCCATTAGCCTAT 58.503 41.667 0.00 0.00 45.47 2.57
1923 1940 4.263156 CCCGGTAATTTAGCCATTAGCCTA 60.263 45.833 0.00 0.00 45.47 3.93
1924 1941 3.497942 CCCGGTAATTTAGCCATTAGCCT 60.498 47.826 0.00 0.00 45.47 4.58
1925 1942 2.817844 CCCGGTAATTTAGCCATTAGCC 59.182 50.000 0.00 0.00 45.47 3.93
1926 1943 3.252458 CACCCGGTAATTTAGCCATTAGC 59.748 47.826 0.00 0.00 44.25 3.09
1927 1944 4.710324 TCACCCGGTAATTTAGCCATTAG 58.290 43.478 0.00 0.00 0.00 1.73
1932 1949 3.811497 GTGTATCACCCGGTAATTTAGCC 59.189 47.826 0.00 0.00 0.00 3.93
1937 1954 6.403878 GCATATAGTGTATCACCCGGTAATT 58.596 40.000 0.00 0.00 34.49 1.40
1944 1961 5.877012 CAGATTGGCATATAGTGTATCACCC 59.123 44.000 0.00 0.00 34.49 4.61
1945 1962 5.877012 CCAGATTGGCATATAGTGTATCACC 59.123 44.000 0.00 0.00 34.49 4.02
1946 1963 5.877012 CCCAGATTGGCATATAGTGTATCAC 59.123 44.000 0.00 0.00 35.79 3.06
1955 1972 5.387113 AAACTGACCCAGATTGGCATATA 57.613 39.130 0.45 0.00 35.79 0.86
1958 1975 2.610438 AAACTGACCCAGATTGGCAT 57.390 45.000 0.45 0.00 35.79 4.40
1959 1976 3.737559 ATAAACTGACCCAGATTGGCA 57.262 42.857 0.45 0.00 35.79 4.92
1963 1980 6.295719 ACGAGTAATAAACTGACCCAGATT 57.704 37.500 0.45 0.00 39.07 2.40
1969 1986 7.546667 TCATTTGGTACGAGTAATAAACTGACC 59.453 37.037 0.00 0.00 39.07 4.02
1977 1994 8.467963 TGGTCTATCATTTGGTACGAGTAATA 57.532 34.615 0.00 0.00 0.00 0.98
1978 1995 7.356089 TGGTCTATCATTTGGTACGAGTAAT 57.644 36.000 0.00 0.00 0.00 1.89
1980 1997 6.737622 GCATGGTCTATCATTTGGTACGAGTA 60.738 42.308 0.00 0.00 0.00 2.59
1981 1998 5.601662 CATGGTCTATCATTTGGTACGAGT 58.398 41.667 0.00 0.00 0.00 4.18
1989 2012 4.795268 GCATCTGCATGGTCTATCATTTG 58.205 43.478 0.00 0.00 41.59 2.32
2021 2044 2.279582 ACACGCAGTTTCCTAGATCG 57.720 50.000 0.00 0.00 41.61 3.69
2057 2080 6.365970 AATGACAGGAGAAAGTAGTGATGT 57.634 37.500 0.00 0.00 0.00 3.06
2063 2086 4.452455 ACGCAAAATGACAGGAGAAAGTAG 59.548 41.667 0.00 0.00 0.00 2.57
2080 2103 7.543520 TCATATGTAATGATTTTTGCACGCAAA 59.456 29.630 12.98 12.98 43.23 3.68
2085 2108 8.700722 TGGTTCATATGTAATGATTTTTGCAC 57.299 30.769 1.90 0.00 0.00 4.57
2086 2109 9.315525 CATGGTTCATATGTAATGATTTTTGCA 57.684 29.630 1.90 0.00 0.00 4.08
2087 2110 9.316730 ACATGGTTCATATGTAATGATTTTTGC 57.683 29.630 1.90 0.00 37.02 3.68
2135 2160 3.254903 GCTTCATTGGATGCATATGCTCA 59.745 43.478 27.13 18.97 42.19 4.26
2137 2162 3.255888 CAGCTTCATTGGATGCATATGCT 59.744 43.478 27.13 13.57 44.33 3.79
2166 2191 5.127845 AGTGCTTAGCAAGAAGATAGCTACA 59.872 40.000 9.05 0.00 41.47 2.74
2206 2231 4.184629 CACATAGCTGAAGTGGAGTTACC 58.815 47.826 0.00 0.00 39.54 2.85
2249 2274 9.337396 ACTCTACACACAAATTCTTCAAACATA 57.663 29.630 0.00 0.00 0.00 2.29
2312 2337 9.726438 AGTAGAGTAATGCATTACAAAGTCTTT 57.274 29.630 37.95 23.77 43.83 2.52
2335 2360 7.987458 GGTCCAAATGATTCTCAGTTCATAGTA 59.013 37.037 0.00 0.00 31.77 1.82
2340 2365 5.005740 CAGGTCCAAATGATTCTCAGTTCA 58.994 41.667 0.00 0.00 31.77 3.18
2347 2372 5.574188 AGCTTAACAGGTCCAAATGATTCT 58.426 37.500 0.00 0.00 0.00 2.40
2361 2386 8.730680 ACCATTGTTACAATAAGAGCTTAACAG 58.269 33.333 10.46 0.00 34.88 3.16
2368 2393 6.308766 CAGCAAACCATTGTTACAATAAGAGC 59.691 38.462 10.46 10.87 38.85 4.09
2421 2446 2.098934 GTGAGAGAGCACGATGACTCAT 59.901 50.000 0.00 0.00 36.89 2.90
2431 2456 1.146637 CAACAGCAGTGAGAGAGCAC 58.853 55.000 0.00 0.00 39.05 4.40
2456 2481 1.461127 GTCAGTTGCTACTTTGCTCCG 59.539 52.381 0.00 0.00 30.26 4.63
2473 2498 3.017442 CCTCACCTCAACTCGATAGTCA 58.983 50.000 0.00 0.00 33.75 3.41
2477 2502 2.753452 GTCACCTCACCTCAACTCGATA 59.247 50.000 0.00 0.00 0.00 2.92
2478 2503 1.546476 GTCACCTCACCTCAACTCGAT 59.454 52.381 0.00 0.00 0.00 3.59
2493 2518 0.468226 TATGCGGAATCAGGGTCACC 59.532 55.000 0.00 0.00 0.00 4.02
2495 2520 1.496060 AGTATGCGGAATCAGGGTCA 58.504 50.000 0.00 0.00 0.00 4.02
2502 2527 5.596845 AGAGAAGAGAAAGTATGCGGAATC 58.403 41.667 0.00 0.00 0.00 2.52
2508 2533 6.543831 AGAGAGAGAGAGAAGAGAAAGTATGC 59.456 42.308 0.00 0.00 0.00 3.14
2513 2538 6.403636 CCGAAAGAGAGAGAGAGAAGAGAAAG 60.404 46.154 0.00 0.00 0.00 2.62
2521 2546 3.517901 AGAGACCGAAAGAGAGAGAGAGA 59.482 47.826 0.00 0.00 0.00 3.10
2522 2547 3.623060 CAGAGACCGAAAGAGAGAGAGAG 59.377 52.174 0.00 0.00 0.00 3.20
2534 2559 5.582269 CAGAAAATAATGAGCAGAGACCGAA 59.418 40.000 0.00 0.00 0.00 4.30
2537 2562 4.036144 GCCAGAAAATAATGAGCAGAGACC 59.964 45.833 0.00 0.00 0.00 3.85
2538 2563 4.880696 AGCCAGAAAATAATGAGCAGAGAC 59.119 41.667 0.00 0.00 0.00 3.36
2579 2610 4.279043 GGTTGTGGTTGCGGGCAC 62.279 66.667 0.00 0.00 0.00 5.01
2591 2622 2.099098 CGCTTTCCTTCAAACTGGTTGT 59.901 45.455 5.20 0.00 38.47 3.32
2609 2640 2.348998 CCACAGCCTTCTTCCGCT 59.651 61.111 0.00 0.00 35.10 5.52
2634 2665 1.078759 GTTCACTGATGCGGTCCTCG 61.079 60.000 0.00 0.00 42.76 4.63
2661 2692 1.742880 CACATGGTGGAGGAGCACG 60.743 63.158 0.00 0.00 34.04 5.34
2698 2729 1.153289 ATGTCTGCACGGCCTCATC 60.153 57.895 0.00 0.00 0.00 2.92
2740 2771 1.407437 GGGTATGTGCTTCCAGAGGTG 60.407 57.143 0.00 0.00 0.00 4.00
2802 2833 2.270352 ACTTGTCAAAATCCTCGGCA 57.730 45.000 0.00 0.00 0.00 5.69
2943 2974 2.061773 GCGTACTGGATCCATGAATCG 58.938 52.381 16.63 15.88 0.00 3.34
2949 2980 3.898123 ACAATAGAGCGTACTGGATCCAT 59.102 43.478 16.63 8.36 0.00 3.41
2958 2989 2.618053 ACCTTGCACAATAGAGCGTAC 58.382 47.619 0.00 0.00 33.73 3.67
2961 2992 2.076100 TGAACCTTGCACAATAGAGCG 58.924 47.619 0.00 0.00 33.73 5.03
2982 3013 2.293170 TCACCGACAATTTTGAGCACA 58.707 42.857 0.00 0.00 0.00 4.57
2994 3025 0.536724 CTCCCACATCATCACCGACA 59.463 55.000 0.00 0.00 0.00 4.35
2995 3026 0.811616 GCTCCCACATCATCACCGAC 60.812 60.000 0.00 0.00 0.00 4.79
3015 3046 1.674221 GGCACGATGAGCTCTGTTTCT 60.674 52.381 16.19 0.00 0.00 2.52
3021 3052 0.682532 TGAGAGGCACGATGAGCTCT 60.683 55.000 16.19 0.00 0.00 4.09
3099 3130 1.996292 TCGGACAGCTTGAGAAATCG 58.004 50.000 0.00 0.00 0.00 3.34
3117 3148 6.036953 CCTGCATCTTCAGTTCTTCTAACATC 59.963 42.308 0.00 0.00 32.32 3.06
3142 3173 1.293179 GCACCCAAAGGCCACATTC 59.707 57.895 5.01 0.00 36.11 2.67
3144 3175 2.990967 CGCACCCAAAGGCCACAT 60.991 61.111 5.01 0.00 36.11 3.21
3190 3221 1.135689 GTTGCATTCGGTAAGCCACAG 60.136 52.381 0.00 0.00 34.09 3.66
3201 3232 1.089920 CCTCAGGGAAGTTGCATTCG 58.910 55.000 0.00 0.00 33.58 3.34
3223 3254 4.158384 GGTGCAGAAATACAAACACGATG 58.842 43.478 0.00 0.00 0.00 3.84
3380 3411 2.624838 CCATGACAACCTTCACAGCTTT 59.375 45.455 0.00 0.00 0.00 3.51
3411 3442 6.212791 TCAAAAGCACACTACTATAACTCCCT 59.787 38.462 0.00 0.00 0.00 4.20
3421 3452 7.255139 GGACAAAGTATTCAAAAGCACACTACT 60.255 37.037 0.00 0.00 0.00 2.57
3429 3460 5.928264 AGCATTGGACAAAGTATTCAAAAGC 59.072 36.000 0.00 0.00 0.00 3.51
3678 3713 5.439721 TGCAGGTATAATCAGCAGTGAAAT 58.560 37.500 0.00 0.00 35.88 2.17
3681 3716 4.694760 ATGCAGGTATAATCAGCAGTGA 57.305 40.909 0.00 0.00 38.75 3.41
3773 3808 9.203421 GAACCCATTATGTTTAAGTTTTTCTGG 57.797 33.333 0.00 0.00 0.00 3.86
3920 3966 5.692115 TGATCTAAGGGTGCACTTCAATA 57.308 39.130 17.98 6.48 32.02 1.90
4162 4216 5.444663 AAAGAGTCTTCAATCTGCCAAAC 57.555 39.130 5.70 0.00 0.00 2.93
4313 4367 9.556030 CAATGCAATACACATGATCTATTCATC 57.444 33.333 0.00 0.00 43.40 2.92
4335 4389 8.246180 ACACAAGCCATTTTAGTAAGATCAATG 58.754 33.333 0.00 0.00 0.00 2.82
4591 4672 5.715070 AGATGAGAGCAACTAGTGTACAAC 58.285 41.667 0.00 0.00 0.00 3.32
4600 4681 6.488344 ACTCGATATGAAGATGAGAGCAACTA 59.512 38.462 0.00 0.00 0.00 2.24
4636 4717 8.303876 GCAAAGTAAACTGGATATTTCCTCAAA 58.696 33.333 3.72 0.00 43.07 2.69
4637 4718 7.669722 AGCAAAGTAAACTGGATATTTCCTCAA 59.330 33.333 3.72 0.00 43.07 3.02
4638 4719 7.175104 AGCAAAGTAAACTGGATATTTCCTCA 58.825 34.615 3.72 0.00 43.07 3.86
4639 4720 7.631717 AGCAAAGTAAACTGGATATTTCCTC 57.368 36.000 3.72 0.00 43.07 3.71
4640 4721 7.890655 AGAAGCAAAGTAAACTGGATATTTCCT 59.109 33.333 3.72 0.00 43.07 3.36
4641 4722 8.056407 AGAAGCAAAGTAAACTGGATATTTCC 57.944 34.615 0.00 0.00 42.94 3.13
4644 4725 8.624776 GCATAGAAGCAAAGTAAACTGGATATT 58.375 33.333 0.00 0.00 0.00 1.28
4649 4730 5.163713 GGAGCATAGAAGCAAAGTAAACTGG 60.164 44.000 0.00 0.00 36.85 4.00
4665 4746 3.726607 CAAGCCAGTAAGAGGAGCATAG 58.273 50.000 0.00 0.00 0.00 2.23
4720 4801 8.236586 TCACAAATTGCATATACAGAACTGAAC 58.763 33.333 8.87 0.00 0.00 3.18
4723 4804 6.968904 GGTCACAAATTGCATATACAGAACTG 59.031 38.462 0.00 0.00 0.00 3.16
4728 4809 8.597227 CAAATTGGTCACAAATTGCATATACAG 58.403 33.333 0.00 0.00 39.72 2.74
4737 4818 9.421806 TCTAATAAGCAAATTGGTCACAAATTG 57.578 29.630 0.00 4.38 45.76 2.32
4760 4841 7.764617 ACTATGGGAGATCAAGAGATTCTCTA 58.235 38.462 16.41 2.66 40.28 2.43
4850 4932 3.297736 AGACTTCCAGGGGTATAAGACG 58.702 50.000 0.00 0.00 0.00 4.18
4856 4938 6.044404 CCAAATACATAGACTTCCAGGGGTAT 59.956 42.308 0.00 0.00 0.00 2.73
4860 4942 5.630415 TCCAAATACATAGACTTCCAGGG 57.370 43.478 0.00 0.00 0.00 4.45
4907 4995 2.775960 TCGGAGTACATAGACCAGGAGA 59.224 50.000 0.00 0.00 0.00 3.71
4980 5070 9.650714 TCAATAGGAATTTCTGATTGATTGGAT 57.349 29.630 16.09 0.00 32.90 3.41
5059 5149 1.810755 ACACGAGACGATAGACTGCAA 59.189 47.619 0.00 0.00 42.25 4.08
5106 5196 2.005370 TAGTCTTCACCGGACCAGTT 57.995 50.000 9.46 0.00 34.56 3.16
5134 5224 3.119101 ACACTTCTATCACTGGCCTAACG 60.119 47.826 3.32 0.00 0.00 3.18
5138 5228 4.373156 AAAACACTTCTATCACTGGCCT 57.627 40.909 3.32 0.00 0.00 5.19
5140 5230 5.392057 GGCTTAAAACACTTCTATCACTGGC 60.392 44.000 0.00 0.00 0.00 4.85
5159 5251 5.172205 GGACAAAACAACACAAAAGGCTTA 58.828 37.500 0.00 0.00 0.00 3.09
5214 5306 3.317711 CCATTTGCTCAGTTGTACCAACA 59.682 43.478 9.53 0.00 0.00 3.33
5216 5308 3.561143 ACCATTTGCTCAGTTGTACCAA 58.439 40.909 0.00 0.00 0.00 3.67
5227 5319 3.181466 ACCCAACTCAAAACCATTTGCTC 60.181 43.478 0.00 0.00 44.52 4.26
5230 5322 5.529581 ACTACCCAACTCAAAACCATTTG 57.470 39.130 0.00 0.00 45.92 2.32
5234 5326 5.313280 ACATACTACCCAACTCAAAACCA 57.687 39.130 0.00 0.00 0.00 3.67
5235 5327 6.644248 AAACATACTACCCAACTCAAAACC 57.356 37.500 0.00 0.00 0.00 3.27
5240 5332 7.514721 AGAAGAAAAACATACTACCCAACTCA 58.485 34.615 0.00 0.00 0.00 3.41
5241 5333 7.981102 AGAAGAAAAACATACTACCCAACTC 57.019 36.000 0.00 0.00 0.00 3.01
5261 5354 6.879458 ACATACTGCCCAACTTAACTTAGAAG 59.121 38.462 0.00 0.00 0.00 2.85
5295 5388 7.093354 TGACAAGAGATAAAAGAGTGCTAGTG 58.907 38.462 0.00 0.00 0.00 2.74
5301 5394 9.645059 TCATTACTGACAAGAGATAAAAGAGTG 57.355 33.333 0.00 0.00 0.00 3.51
5359 5452 2.672381 GCAACAAGCACACACAACATTT 59.328 40.909 0.00 0.00 44.79 2.32
5362 5455 3.415237 GCAACAAGCACACACAACA 57.585 47.368 0.00 0.00 44.79 3.33
5485 5583 2.874014 TGCCCAGTTTGATGATGTTCA 58.126 42.857 0.00 0.00 0.00 3.18
5538 5636 3.882888 CTCAGAAGGCCACTAAAAACACA 59.117 43.478 5.01 0.00 0.00 3.72
5539 5637 4.134563 TCTCAGAAGGCCACTAAAAACAC 58.865 43.478 5.01 0.00 0.00 3.32
5540 5638 4.431416 TCTCAGAAGGCCACTAAAAACA 57.569 40.909 5.01 0.00 0.00 2.83
5541 5639 5.767816 TTTCTCAGAAGGCCACTAAAAAC 57.232 39.130 5.01 0.00 0.00 2.43
5542 5640 6.068010 TCATTTCTCAGAAGGCCACTAAAAA 58.932 36.000 5.01 5.90 0.00 1.94
5543 5641 5.630121 TCATTTCTCAGAAGGCCACTAAAA 58.370 37.500 5.01 6.23 0.00 1.52
5544 5642 5.241403 TCATTTCTCAGAAGGCCACTAAA 57.759 39.130 5.01 2.34 0.00 1.85
5545 5643 4.908601 TCATTTCTCAGAAGGCCACTAA 57.091 40.909 5.01 0.00 0.00 2.24
5546 5644 4.532126 TCTTCATTTCTCAGAAGGCCACTA 59.468 41.667 5.01 0.00 41.16 2.74
5547 5645 3.328931 TCTTCATTTCTCAGAAGGCCACT 59.671 43.478 5.01 0.00 41.16 4.00
5548 5646 3.679389 TCTTCATTTCTCAGAAGGCCAC 58.321 45.455 5.01 0.00 41.16 5.01
5549 5647 3.328931 ACTCTTCATTTCTCAGAAGGCCA 59.671 43.478 5.01 0.00 41.16 5.36
5550 5648 3.688673 CACTCTTCATTTCTCAGAAGGCC 59.311 47.826 0.00 0.00 41.16 5.19
5551 5649 4.573900 TCACTCTTCATTTCTCAGAAGGC 58.426 43.478 0.00 0.00 41.16 4.35
5552 5650 7.780064 TCTATCACTCTTCATTTCTCAGAAGG 58.220 38.462 0.00 0.00 41.16 3.46
5553 5651 7.922278 CCTCTATCACTCTTCATTTCTCAGAAG 59.078 40.741 0.00 0.00 41.95 2.85
5554 5652 7.632462 GCCTCTATCACTCTTCATTTCTCAGAA 60.632 40.741 0.00 0.00 0.00 3.02
5555 5653 6.183360 GCCTCTATCACTCTTCATTTCTCAGA 60.183 42.308 0.00 0.00 0.00 3.27
5556 5654 5.984926 GCCTCTATCACTCTTCATTTCTCAG 59.015 44.000 0.00 0.00 0.00 3.35
5557 5655 5.451103 CGCCTCTATCACTCTTCATTTCTCA 60.451 44.000 0.00 0.00 0.00 3.27
5558 5656 4.981674 CGCCTCTATCACTCTTCATTTCTC 59.018 45.833 0.00 0.00 0.00 2.87
5559 5657 4.404073 ACGCCTCTATCACTCTTCATTTCT 59.596 41.667 0.00 0.00 0.00 2.52
5560 5658 4.688021 ACGCCTCTATCACTCTTCATTTC 58.312 43.478 0.00 0.00 0.00 2.17
5561 5659 4.744795 ACGCCTCTATCACTCTTCATTT 57.255 40.909 0.00 0.00 0.00 2.32
5562 5660 4.744795 AACGCCTCTATCACTCTTCATT 57.255 40.909 0.00 0.00 0.00 2.57
5563 5661 5.133941 TCTAACGCCTCTATCACTCTTCAT 58.866 41.667 0.00 0.00 0.00 2.57
5564 5662 4.524053 TCTAACGCCTCTATCACTCTTCA 58.476 43.478 0.00 0.00 0.00 3.02
5565 5663 5.009210 ACATCTAACGCCTCTATCACTCTTC 59.991 44.000 0.00 0.00 0.00 2.87
5566 5664 4.890581 ACATCTAACGCCTCTATCACTCTT 59.109 41.667 0.00 0.00 0.00 2.85
5567 5665 4.465886 ACATCTAACGCCTCTATCACTCT 58.534 43.478 0.00 0.00 0.00 3.24
5568 5666 4.276183 TGACATCTAACGCCTCTATCACTC 59.724 45.833 0.00 0.00 0.00 3.51
5569 5667 4.207955 TGACATCTAACGCCTCTATCACT 58.792 43.478 0.00 0.00 0.00 3.41
5570 5668 4.569761 TGACATCTAACGCCTCTATCAC 57.430 45.455 0.00 0.00 0.00 3.06
5571 5669 5.069119 ACAATGACATCTAACGCCTCTATCA 59.931 40.000 0.00 0.00 0.00 2.15
5572 5670 5.533482 ACAATGACATCTAACGCCTCTATC 58.467 41.667 0.00 0.00 0.00 2.08
5573 5671 5.303078 AGACAATGACATCTAACGCCTCTAT 59.697 40.000 0.00 0.00 0.00 1.98
5574 5672 4.645136 AGACAATGACATCTAACGCCTCTA 59.355 41.667 0.00 0.00 0.00 2.43
5575 5673 3.449018 AGACAATGACATCTAACGCCTCT 59.551 43.478 0.00 0.00 0.00 3.69
5576 5674 3.786635 AGACAATGACATCTAACGCCTC 58.213 45.455 0.00 0.00 0.00 4.70
5577 5675 3.895232 AGACAATGACATCTAACGCCT 57.105 42.857 0.00 0.00 0.00 5.52
5578 5676 4.154195 ACAAAGACAATGACATCTAACGCC 59.846 41.667 0.00 0.00 0.00 5.68
5579 5677 5.283060 ACAAAGACAATGACATCTAACGC 57.717 39.130 0.00 0.00 0.00 4.84
5580 5678 6.887368 TGAACAAAGACAATGACATCTAACG 58.113 36.000 0.00 0.00 0.00 3.18
5581 5679 7.591426 GGTTGAACAAAGACAATGACATCTAAC 59.409 37.037 0.00 0.00 0.00 2.34
5582 5680 7.502226 AGGTTGAACAAAGACAATGACATCTAA 59.498 33.333 0.00 0.00 0.00 2.10
5583 5681 6.998074 AGGTTGAACAAAGACAATGACATCTA 59.002 34.615 0.00 0.00 0.00 1.98
5584 5682 5.829924 AGGTTGAACAAAGACAATGACATCT 59.170 36.000 0.00 0.00 0.00 2.90
5603 5701 2.462456 TGCTCTGTTGCTCTAGGTTG 57.538 50.000 0.00 0.00 0.00 3.77
5623 5721 9.220767 GTTTGTCATTTGAGGATAAAGTACTCT 57.779 33.333 0.00 0.00 38.72 3.24
5625 5723 9.220767 GAGTTTGTCATTTGAGGATAAAGTACT 57.779 33.333 0.00 0.00 0.00 2.73
5626 5724 9.220767 AGAGTTTGTCATTTGAGGATAAAGTAC 57.779 33.333 0.00 0.00 0.00 2.73
5628 5726 9.965902 ATAGAGTTTGTCATTTGAGGATAAAGT 57.034 29.630 0.00 0.00 0.00 2.66
5630 5728 9.958180 TGATAGAGTTTGTCATTTGAGGATAAA 57.042 29.630 0.00 0.00 0.00 1.40
5631 5729 9.383519 GTGATAGAGTTTGTCATTTGAGGATAA 57.616 33.333 0.00 0.00 0.00 1.75
5632 5730 8.762645 AGTGATAGAGTTTGTCATTTGAGGATA 58.237 33.333 0.00 0.00 0.00 2.59
5633 5731 7.551974 CAGTGATAGAGTTTGTCATTTGAGGAT 59.448 37.037 0.00 0.00 0.00 3.24
5634 5732 6.875726 CAGTGATAGAGTTTGTCATTTGAGGA 59.124 38.462 0.00 0.00 0.00 3.71
5635 5733 6.402983 GCAGTGATAGAGTTTGTCATTTGAGG 60.403 42.308 0.00 0.00 0.00 3.86
5636 5734 6.370994 AGCAGTGATAGAGTTTGTCATTTGAG 59.629 38.462 0.00 0.00 0.00 3.02
5637 5735 6.233434 AGCAGTGATAGAGTTTGTCATTTGA 58.767 36.000 0.00 0.00 0.00 2.69
5638 5736 6.370994 AGAGCAGTGATAGAGTTTGTCATTTG 59.629 38.462 0.00 0.00 0.00 2.32
5639 5737 6.370994 CAGAGCAGTGATAGAGTTTGTCATTT 59.629 38.462 0.00 0.00 0.00 2.32
5640 5738 5.873712 CAGAGCAGTGATAGAGTTTGTCATT 59.126 40.000 0.00 0.00 0.00 2.57
5641 5739 5.417811 CAGAGCAGTGATAGAGTTTGTCAT 58.582 41.667 0.00 0.00 0.00 3.06
5642 5740 4.814147 CAGAGCAGTGATAGAGTTTGTCA 58.186 43.478 0.00 0.00 0.00 3.58
5643 5741 3.616379 GCAGAGCAGTGATAGAGTTTGTC 59.384 47.826 0.00 0.00 0.00 3.18
5644 5742 3.594134 GCAGAGCAGTGATAGAGTTTGT 58.406 45.455 0.00 0.00 0.00 2.83
5645 5743 2.935201 GGCAGAGCAGTGATAGAGTTTG 59.065 50.000 0.00 0.00 0.00 2.93
5646 5744 2.836981 AGGCAGAGCAGTGATAGAGTTT 59.163 45.455 0.00 0.00 0.00 2.66
5684 5782 3.941483 CGCCATCTTATTCCTCAGTTTGT 59.059 43.478 0.00 0.00 0.00 2.83
5706 5804 2.582978 GACTGGTAACCCTCCCGC 59.417 66.667 0.00 0.00 0.00 6.13
5708 5806 1.896122 CGTGGACTGGTAACCCTCCC 61.896 65.000 0.00 0.00 31.45 4.30
5709 5807 0.901580 TCGTGGACTGGTAACCCTCC 60.902 60.000 0.00 0.00 0.00 4.30
5710 5808 0.971386 TTCGTGGACTGGTAACCCTC 59.029 55.000 0.00 0.00 0.00 4.30
5711 5809 0.683412 GTTCGTGGACTGGTAACCCT 59.317 55.000 0.00 0.00 0.00 4.34
5712 5810 0.393820 TGTTCGTGGACTGGTAACCC 59.606 55.000 0.00 0.00 0.00 4.11
5713 5811 2.073816 CATGTTCGTGGACTGGTAACC 58.926 52.381 0.00 0.00 0.00 2.85
5714 5812 1.463444 GCATGTTCGTGGACTGGTAAC 59.537 52.381 0.00 0.00 0.00 2.50
5715 5813 1.346395 AGCATGTTCGTGGACTGGTAA 59.654 47.619 0.00 0.00 0.00 2.85
5717 5815 0.108585 AAGCATGTTCGTGGACTGGT 59.891 50.000 0.00 0.00 0.00 4.00
5718 5816 2.093306 TAAGCATGTTCGTGGACTGG 57.907 50.000 0.00 0.00 0.00 4.00
5723 5821 5.109210 TCAGACTTATAAGCATGTTCGTGG 58.891 41.667 12.54 0.00 0.00 4.94
5725 5823 6.810911 AGATCAGACTTATAAGCATGTTCGT 58.189 36.000 12.54 4.44 0.00 3.85
5726 5824 7.651304 AGAAGATCAGACTTATAAGCATGTTCG 59.349 37.037 12.54 0.43 0.00 3.95
5727 5825 8.885494 AGAAGATCAGACTTATAAGCATGTTC 57.115 34.615 12.54 13.99 0.00 3.18
5728 5826 8.703743 AGAGAAGATCAGACTTATAAGCATGTT 58.296 33.333 12.54 6.60 0.00 2.71
5762 6082 3.291584 GAAAGCCTAAGAATGGGAAGGG 58.708 50.000 0.00 0.00 0.00 3.95
5763 6083 3.053320 AGGAAAGCCTAAGAATGGGAAGG 60.053 47.826 0.00 0.00 44.74 3.46
5806 6126 8.768501 AATCTATGACACCTGTAATCAGTAGA 57.231 34.615 0.00 0.00 39.82 2.59
5823 6143 6.755141 GTCGCAGGTTAGTACAAAATCTATGA 59.245 38.462 0.00 0.00 0.00 2.15
5835 6155 2.624364 TGTTCACAGTCGCAGGTTAGTA 59.376 45.455 0.00 0.00 0.00 1.82
5859 6179 3.660501 TGAGCAGTACTTCATTCGTGT 57.339 42.857 0.00 0.00 0.00 4.49
5864 6184 5.181748 GGTCAAGATGAGCAGTACTTCATT 58.818 41.667 10.65 0.00 43.79 2.57
5925 6245 5.360144 GCCACCAAGTAGTACTAGAAGATCA 59.640 44.000 1.87 0.00 0.00 2.92
5926 6246 5.360144 TGCCACCAAGTAGTACTAGAAGATC 59.640 44.000 1.87 0.00 0.00 2.75
5980 6438 2.679342 CCCTTTCGGATGGGGCTCA 61.679 63.158 6.78 0.00 39.76 4.26
5991 6449 0.533755 CCTCTGCCTATGCCCTTTCG 60.534 60.000 0.00 0.00 36.33 3.46
6002 6460 3.886505 CTCGTACTAAAGATCCTCTGCCT 59.113 47.826 0.00 0.00 0.00 4.75
6006 6464 4.412858 TCCCTCTCGTACTAAAGATCCTCT 59.587 45.833 0.00 0.00 0.00 3.69
6018 6476 3.586892 CCTGTTTTTCTCCCTCTCGTAC 58.413 50.000 0.00 0.00 0.00 3.67
6021 6479 1.348036 ACCCTGTTTTTCTCCCTCTCG 59.652 52.381 0.00 0.00 0.00 4.04
6048 6506 1.521580 AGCTTGCTCTGCTGAGTTTC 58.478 50.000 20.24 6.18 42.13 2.78
6096 6554 6.042552 TCTGAAACTGGAATCTTCTGAAGTCT 59.957 38.462 16.43 5.63 0.00 3.24
6097 6555 6.226787 TCTGAAACTGGAATCTTCTGAAGTC 58.773 40.000 16.43 8.17 0.00 3.01
6098 6556 6.042552 TCTCTGAAACTGGAATCTTCTGAAGT 59.957 38.462 16.43 0.00 29.95 3.01
6100 6558 6.425210 TCTCTGAAACTGGAATCTTCTGAA 57.575 37.500 0.00 0.00 29.95 3.02
6215 6673 5.404968 TGCAATTTGGAAATCTAAAGCAACG 59.595 36.000 0.00 0.00 29.96 4.10
6221 6679 7.768120 AGTGTTTGTGCAATTTGGAAATCTAAA 59.232 29.630 0.00 0.00 0.00 1.85
6234 6692 2.958355 ACCTGCTAAGTGTTTGTGCAAT 59.042 40.909 0.00 0.00 33.07 3.56
6241 6699 5.562298 TCTAAAGGACCTGCTAAGTGTTT 57.438 39.130 0.00 0.00 0.00 2.83
6285 6743 2.565841 GTGTTTGCAGAGGACAGTTCT 58.434 47.619 0.00 0.00 0.00 3.01
6310 6768 5.468540 TGTAGTAAGATGTGCTTGTCTGT 57.531 39.130 0.00 0.00 37.42 3.41
6315 6773 7.134815 GGCATAAATGTAGTAAGATGTGCTTG 58.865 38.462 0.00 0.00 37.42 4.01
6316 6774 6.828273 TGGCATAAATGTAGTAAGATGTGCTT 59.172 34.615 0.00 0.00 40.68 3.91
6317 6775 6.356556 TGGCATAAATGTAGTAAGATGTGCT 58.643 36.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.