Multiple sequence alignment - TraesCS6B01G141500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G141500 chr6B 100.000 5252 0 0 1 5252 140843064 140848315 0.000000e+00 9699.0
1 TraesCS6B01G141500 chr6B 96.029 554 20 1 1193 1746 219670360 219670911 0.000000e+00 900.0
2 TraesCS6B01G141500 chr6B 90.667 75 7 0 2658 2732 140817795 140817721 3.350000e-17 100.0
3 TraesCS6B01G141500 chr6A 94.118 2363 106 16 2125 4479 82107850 82105513 0.000000e+00 3563.0
4 TraesCS6B01G141500 chr6A 91.039 1540 77 16 620 2130 82109684 82108177 0.000000e+00 2023.0
5 TraesCS6B01G141500 chr6A 95.219 251 10 1 4444 4692 82105510 82105260 3.810000e-106 396.0
6 TraesCS6B01G141500 chr6D 95.403 1588 66 6 3109 4692 65755448 65757032 0.000000e+00 2521.0
7 TraesCS6B01G141500 chr6D 90.081 988 64 15 1202 2186 65753729 65754685 0.000000e+00 1251.0
8 TraesCS6B01G141500 chr6D 93.993 566 24 5 617 1177 65753174 65753734 0.000000e+00 848.0
9 TraesCS6B01G141500 chr6D 92.927 509 25 3 2572 3078 65754713 65755212 0.000000e+00 730.0
10 TraesCS6B01G141500 chr6D 91.379 58 3 2 587 644 65754735 65754680 1.570000e-10 78.7
11 TraesCS6B01G141500 chr7A 91.935 1178 72 16 3527 4692 504221545 504222711 0.000000e+00 1628.0
12 TraesCS6B01G141500 chr7A 85.653 467 41 11 775 1235 504218749 504219195 7.960000e-128 468.0
13 TraesCS6B01G141500 chr7A 85.124 484 33 14 1330 1810 504219413 504219860 4.790000e-125 459.0
14 TraesCS6B01G141500 chr7A 91.139 158 13 1 1859 2016 504220179 504220335 4.120000e-51 213.0
15 TraesCS6B01G141500 chr7A 91.946 149 8 3 2469 2615 701301359 701301505 6.890000e-49 206.0
16 TraesCS6B01G141500 chr7A 88.957 163 14 2 2469 2629 679957018 679957178 1.150000e-46 198.0
17 TraesCS6B01G141500 chr7A 86.705 173 16 6 2463 2631 201987161 201986992 8.980000e-43 185.0
18 TraesCS6B01G141500 chr7D 88.227 1376 109 27 3244 4598 428024574 428023231 0.000000e+00 1594.0
19 TraesCS6B01G141500 chr7D 88.939 660 51 8 611 1260 428028127 428027480 0.000000e+00 795.0
20 TraesCS6B01G141500 chr7D 85.766 548 47 20 1261 1804 428027322 428026802 7.690000e-153 551.0
21 TraesCS6B01G141500 chr7D 79.827 347 51 10 219 559 580318405 580318738 8.790000e-58 235.0
22 TraesCS6B01G141500 chr7D 88.957 163 14 2 2469 2629 588081777 588081937 1.150000e-46 198.0
23 TraesCS6B01G141500 chr7B 87.718 1376 107 34 3244 4590 445663118 445661776 0.000000e+00 1548.0
24 TraesCS6B01G141500 chr7B 88.280 657 47 8 611 1252 445666697 445666056 0.000000e+00 760.0
25 TraesCS6B01G141500 chr7B 91.977 511 40 1 4743 5252 747328342 747328852 0.000000e+00 715.0
26 TraesCS6B01G141500 chr7B 91.096 438 38 1 4748 5185 724482384 724481948 4.530000e-165 592.0
27 TraesCS6B01G141500 chr7B 88.789 446 49 1 4742 5187 591970160 591970604 3.580000e-151 545.0
28 TraesCS6B01G141500 chr7B 85.110 544 52 19 1261 1801 445665886 445665369 3.600000e-146 529.0
29 TraesCS6B01G141500 chr7B 87.421 159 16 3 2475 2631 155471313 155471157 4.180000e-41 180.0
30 TraesCS6B01G141500 chr7B 88.696 115 12 1 1903 2017 445665202 445665089 7.090000e-29 139.0
31 TraesCS6B01G141500 chr7B 91.139 79 7 0 1 79 115473431 115473509 2.000000e-19 108.0
32 TraesCS6B01G141500 chr2D 93.714 525 31 2 4729 5252 53583239 53583762 0.000000e+00 785.0
33 TraesCS6B01G141500 chr2D 95.833 48 2 0 4695 4742 279052756 279052803 1.570000e-10 78.7
34 TraesCS6B01G141500 chr4B 90.787 445 40 1 4743 5187 417219937 417220380 1.260000e-165 593.0
35 TraesCS6B01G141500 chr4B 93.878 147 6 2 2474 2618 78607470 78607615 8.860000e-53 219.0
36 TraesCS6B01G141500 chr4B 92.105 152 9 2 2469 2618 78607767 78607917 1.480000e-50 211.0
37 TraesCS6B01G141500 chr3A 89.688 417 42 1 4743 5159 711411821 711411406 1.000000e-146 531.0
38 TraesCS6B01G141500 chr3A 89.448 417 44 0 4743 5159 700751948 700752364 1.300000e-145 527.0
39 TraesCS6B01G141500 chr3A 88.356 438 48 2 4742 5179 725123398 725123832 1.680000e-144 523.0
40 TraesCS6B01G141500 chr4A 87.865 445 53 1 4742 5186 487916123 487915680 6.030000e-144 521.0
41 TraesCS6B01G141500 chr2A 90.476 273 17 3 4989 5252 708450425 708450153 8.370000e-93 351.0
42 TraesCS6B01G141500 chr2A 92.763 152 8 2 2469 2618 715334952 715335102 3.180000e-52 217.0
43 TraesCS6B01G141500 chr2A 88.485 165 11 6 2468 2629 210472150 210471991 5.370000e-45 193.0
44 TraesCS6B01G141500 chr2A 97.917 48 1 0 4695 4742 12319342 12319295 3.370000e-12 84.2
45 TraesCS6B01G141500 chr1B 91.414 198 16 1 609 805 15712717 15712914 2.410000e-68 270.0
46 TraesCS6B01G141500 chr5B 75.789 570 89 27 24 562 273186798 273186247 5.250000e-60 243.0
47 TraesCS6B01G141500 chr5B 90.000 160 10 5 2473 2628 288327805 288327648 8.920000e-48 202.0
48 TraesCS6B01G141500 chr5B 97.917 48 1 0 4695 4742 699389821 699389774 3.370000e-12 84.2
49 TraesCS6B01G141500 chr5D 92.763 152 8 2 2473 2622 256749803 256749953 3.180000e-52 217.0
50 TraesCS6B01G141500 chr2B 93.103 145 8 1 2479 2621 602996443 602996299 1.480000e-50 211.0
51 TraesCS6B01G141500 chr4D 90.123 162 12 3 2463 2621 74079510 74079350 1.920000e-49 207.0
52 TraesCS6B01G141500 chr4D 84.821 112 16 1 1 112 477528764 477528654 1.550000e-20 111.0
53 TraesCS6B01G141500 chr4D 97.917 48 1 0 4695 4742 327304226 327304273 3.370000e-12 84.2
54 TraesCS6B01G141500 chr1D 91.026 156 11 2 2469 2622 97132622 97132468 1.920000e-49 207.0
55 TraesCS6B01G141500 chr1D 84.043 94 13 2 260 352 342120277 342120185 7.240000e-14 89.8
56 TraesCS6B01G141500 chr1D 97.826 46 1 0 4697 4742 52678713 52678758 4.360000e-11 80.5
57 TraesCS6B01G141500 chr5A 86.207 174 18 5 2474 2643 660831103 660831274 3.230000e-42 183.0
58 TraesCS6B01G141500 chr5A 80.000 180 30 6 376 552 671549993 671550169 1.540000e-25 128.0
59 TraesCS6B01G141500 chr3D 81.208 149 17 8 15 152 522957911 522958059 5.560000e-20 110.0
60 TraesCS6B01G141500 chr3B 95.745 47 2 0 4695 4741 6970577 6970623 5.640000e-10 76.8
61 TraesCS6B01G141500 chrUn 100.000 33 0 0 188 220 32197482 32197514 1.580000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G141500 chr6B 140843064 140848315 5251 False 9699.0 9699 100.000000 1 5252 1 chr6B.!!$F1 5251
1 TraesCS6B01G141500 chr6B 219670360 219670911 551 False 900.0 900 96.029000 1193 1746 1 chr6B.!!$F2 553
2 TraesCS6B01G141500 chr6A 82105260 82109684 4424 True 1994.0 3563 93.458667 620 4692 3 chr6A.!!$R1 4072
3 TraesCS6B01G141500 chr6D 65753174 65757032 3858 False 1337.5 2521 93.101000 617 4692 4 chr6D.!!$F1 4075
4 TraesCS6B01G141500 chr7A 504218749 504222711 3962 False 692.0 1628 88.462750 775 4692 4 chr7A.!!$F3 3917
5 TraesCS6B01G141500 chr7D 428023231 428028127 4896 True 980.0 1594 87.644000 611 4598 3 chr7D.!!$R1 3987
6 TraesCS6B01G141500 chr7B 445661776 445666697 4921 True 744.0 1548 87.451000 611 4590 4 chr7B.!!$R3 3979
7 TraesCS6B01G141500 chr7B 747328342 747328852 510 False 715.0 715 91.977000 4743 5252 1 chr7B.!!$F3 509
8 TraesCS6B01G141500 chr2D 53583239 53583762 523 False 785.0 785 93.714000 4729 5252 1 chr2D.!!$F1 523
9 TraesCS6B01G141500 chr5B 273186247 273186798 551 True 243.0 243 75.789000 24 562 1 chr5B.!!$R1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 533 0.103572 TAAGGTGTCTATTCGGCCGC 59.896 55.000 23.51 5.62 0.00 6.53 F
571 597 0.321830 GCGGTTTAAGGGGTGTGCTA 60.322 55.000 0.00 0.00 0.00 3.49 F
1319 1548 1.246056 TGCCCATCAGTTTGCTCTGC 61.246 55.000 0.00 0.00 35.63 4.26 F
2909 3847 1.408702 GGCCAGCTGTTGTTTTTCTCA 59.591 47.619 13.81 0.00 0.00 3.27 F
3234 5612 1.808411 TTGCCGCTTCCTCTTGTTAG 58.192 50.000 0.00 0.00 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2323 3224 0.958091 TCCCACAATCTTTGCAACGG 59.042 50.000 0.00 0.00 0.00 4.44 R
2557 3461 4.421033 TCTGAATCGGATGTATAGACGC 57.579 45.455 0.00 0.00 0.00 5.19 R
3204 4350 2.094752 GGAAGCGGCAAAATTCTAAGCA 60.095 45.455 1.45 0.00 0.00 3.91 R
4188 6775 0.099436 GAAGCACCATCGATGCCAAC 59.901 55.000 20.25 8.64 44.53 3.77 R
4963 7610 0.531974 TCTGCAACTCCACCGTTGTC 60.532 55.000 5.68 0.06 44.61 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.463674 CCCAAAGGTGTCCTGTATGC 58.536 55.000 0.00 0.00 32.13 3.14
22 23 1.086696 CCAAAGGTGTCCTGTATGCG 58.913 55.000 0.00 0.00 32.13 4.73
23 24 0.447801 CAAAGGTGTCCTGTATGCGC 59.552 55.000 0.00 0.00 32.13 6.09
24 25 1.019278 AAAGGTGTCCTGTATGCGCG 61.019 55.000 0.00 0.00 32.13 6.86
25 26 1.884075 AAGGTGTCCTGTATGCGCGA 61.884 55.000 12.10 0.00 32.13 5.87
26 27 1.447140 GGTGTCCTGTATGCGCGAA 60.447 57.895 12.10 0.00 0.00 4.70
27 28 1.017177 GGTGTCCTGTATGCGCGAAA 61.017 55.000 12.10 0.00 0.00 3.46
28 29 0.370273 GTGTCCTGTATGCGCGAAAG 59.630 55.000 12.10 0.00 0.00 2.62
29 30 0.245266 TGTCCTGTATGCGCGAAAGA 59.755 50.000 12.10 0.00 0.00 2.52
30 31 1.337354 TGTCCTGTATGCGCGAAAGAA 60.337 47.619 12.10 0.00 0.00 2.52
42 43 1.866925 GAAAGAACGTTGGCGGGAG 59.133 57.895 5.00 0.00 43.45 4.30
69 70 2.681848 CTGCCATCAGAACCTTCATGAC 59.318 50.000 0.00 0.00 42.95 3.06
72 73 3.193263 CCATCAGAACCTTCATGACTCG 58.807 50.000 0.00 0.00 0.00 4.18
73 74 2.370281 TCAGAACCTTCATGACTCGC 57.630 50.000 0.00 0.00 0.00 5.03
81 82 1.945354 TTCATGACTCGCTCCCGTCC 61.945 60.000 0.00 0.00 35.54 4.79
148 154 2.829003 CCGACGGAGGAGCTAGCA 60.829 66.667 18.83 0.00 0.00 3.49
149 155 2.718731 CGACGGAGGAGCTAGCAG 59.281 66.667 18.83 3.30 0.00 4.24
150 156 2.415426 GACGGAGGAGCTAGCAGC 59.585 66.667 18.83 8.33 42.84 5.25
176 182 1.007964 CCAGCGAGCTCGAATCGAT 60.008 57.895 38.74 9.05 42.76 3.59
177 183 0.596083 CCAGCGAGCTCGAATCGATT 60.596 55.000 38.74 11.20 42.76 3.34
178 184 0.775273 CAGCGAGCTCGAATCGATTC 59.225 55.000 38.74 25.18 42.76 2.52
259 275 2.914214 GCTAGCTAGCTGAATCGATTCG 59.086 50.000 33.71 23.18 45.62 3.34
260 276 3.365465 GCTAGCTAGCTGAATCGATTCGA 60.365 47.826 33.71 18.03 45.62 3.71
261 277 3.281341 AGCTAGCTGAATCGATTCGAG 57.719 47.619 28.07 24.96 39.91 4.04
263 279 2.606795 GCTAGCTGAATCGATTCGAGCT 60.607 50.000 37.65 37.65 44.91 4.09
264 280 2.132740 AGCTGAATCGATTCGAGCTC 57.867 50.000 34.57 22.30 42.23 4.09
280 304 3.822403 CTCGCTAGCTCGCTCCTGC 62.822 68.421 13.93 0.00 0.00 4.85
289 313 1.660167 CTCGCTCCTGCATTGATTCA 58.340 50.000 0.00 0.00 39.64 2.57
295 319 3.280295 CTCCTGCATTGATTCAGCTTCT 58.720 45.455 0.00 0.00 0.00 2.85
296 320 3.014623 TCCTGCATTGATTCAGCTTCTG 58.985 45.455 0.00 0.00 0.00 3.02
297 321 2.753452 CCTGCATTGATTCAGCTTCTGT 59.247 45.455 0.00 0.00 32.61 3.41
298 322 3.427638 CCTGCATTGATTCAGCTTCTGTG 60.428 47.826 0.00 0.00 32.61 3.66
299 323 3.151554 TGCATTGATTCAGCTTCTGTGT 58.848 40.909 0.00 0.00 32.61 3.72
300 324 3.570975 TGCATTGATTCAGCTTCTGTGTT 59.429 39.130 0.00 0.00 32.61 3.32
301 325 3.918591 GCATTGATTCAGCTTCTGTGTTG 59.081 43.478 0.00 0.00 32.61 3.33
314 339 0.869068 TGTGTTGTATTTGGTCGCCG 59.131 50.000 0.00 0.00 0.00 6.46
315 340 0.167251 GTGTTGTATTTGGTCGCCGG 59.833 55.000 0.00 0.00 0.00 6.13
362 387 4.465413 GCTGGACGCTGCAATTTC 57.535 55.556 0.00 0.00 35.14 2.17
363 388 1.512734 GCTGGACGCTGCAATTTCG 60.513 57.895 0.00 0.00 35.14 3.46
364 389 1.868997 CTGGACGCTGCAATTTCGT 59.131 52.632 0.00 3.21 39.33 3.85
365 390 1.075542 CTGGACGCTGCAATTTCGTA 58.924 50.000 0.00 0.00 36.50 3.43
366 391 0.793861 TGGACGCTGCAATTTCGTAC 59.206 50.000 0.00 5.93 37.55 3.67
369 394 2.495939 GACGCTGCAATTTCGTACTTG 58.504 47.619 0.00 0.00 36.50 3.16
370 395 1.250476 CGCTGCAATTTCGTACTTGC 58.750 50.000 9.66 9.66 46.19 4.01
371 396 1.617740 GCTGCAATTTCGTACTTGCC 58.382 50.000 13.17 0.00 45.58 4.52
373 398 0.519519 TGCAATTTCGTACTTGCCCG 59.480 50.000 13.17 0.00 45.58 6.13
374 399 0.179174 GCAATTTCGTACTTGCCCGG 60.179 55.000 5.92 0.00 41.45 5.73
381 407 1.301165 GTACTTGCCCGGTTCGTGT 60.301 57.895 0.00 0.00 0.00 4.49
383 409 4.025401 CTTGCCCGGTTCGTGTGC 62.025 66.667 0.00 0.00 0.00 4.57
387 413 3.041940 CCCGGTTCGTGTGCTGTC 61.042 66.667 0.00 0.00 0.00 3.51
390 416 2.279918 GGTTCGTGTGCTGTCCGT 60.280 61.111 0.00 0.00 0.00 4.69
392 418 1.590525 GTTCGTGTGCTGTCCGTCA 60.591 57.895 0.00 0.00 0.00 4.35
398 424 0.464036 TGTGCTGTCCGTCAGTTTCT 59.536 50.000 6.70 0.00 45.23 2.52
403 429 2.029290 GCTGTCCGTCAGTTTCTTAGGA 60.029 50.000 6.70 0.00 45.23 2.94
412 438 3.378742 TCAGTTTCTTAGGAGCGAGCTAG 59.621 47.826 0.00 0.00 0.00 3.42
422 448 3.553597 GCGAGCTAGCTAATCGTGT 57.446 52.632 19.38 0.00 38.66 4.49
423 449 2.682952 GCGAGCTAGCTAATCGTGTA 57.317 50.000 19.38 0.00 38.66 2.90
424 450 2.308811 GCGAGCTAGCTAATCGTGTAC 58.691 52.381 19.38 0.21 38.66 2.90
425 451 2.917296 GCGAGCTAGCTAATCGTGTACC 60.917 54.545 19.38 0.00 38.66 3.34
426 452 2.350580 CGAGCTAGCTAATCGTGTACCC 60.351 54.545 19.38 0.00 0.00 3.69
427 453 2.621998 GAGCTAGCTAATCGTGTACCCA 59.378 50.000 19.38 0.00 0.00 4.51
428 454 2.361438 AGCTAGCTAATCGTGTACCCAC 59.639 50.000 17.69 0.00 38.27 4.61
439 465 3.872560 GTGTACCCACGTGAAAGAAAG 57.127 47.619 19.30 0.00 0.00 2.62
440 466 3.460103 GTGTACCCACGTGAAAGAAAGA 58.540 45.455 19.30 0.00 0.00 2.52
441 467 3.872771 GTGTACCCACGTGAAAGAAAGAA 59.127 43.478 19.30 0.00 0.00 2.52
442 468 4.025145 GTGTACCCACGTGAAAGAAAGAAG 60.025 45.833 19.30 0.00 0.00 2.85
443 469 3.553828 ACCCACGTGAAAGAAAGAAGA 57.446 42.857 19.30 0.00 0.00 2.87
444 470 3.203716 ACCCACGTGAAAGAAAGAAGAC 58.796 45.455 19.30 0.00 0.00 3.01
445 471 2.221055 CCCACGTGAAAGAAAGAAGACG 59.779 50.000 19.30 0.00 0.00 4.18
446 472 2.864343 CCACGTGAAAGAAAGAAGACGT 59.136 45.455 19.30 0.00 40.45 4.34
447 473 4.046462 CCACGTGAAAGAAAGAAGACGTA 58.954 43.478 19.30 0.00 37.92 3.57
448 474 4.148348 CCACGTGAAAGAAAGAAGACGTAG 59.852 45.833 19.30 0.00 37.92 3.51
449 475 4.974275 CACGTGAAAGAAAGAAGACGTAGA 59.026 41.667 10.90 0.00 37.92 2.59
450 476 5.457799 CACGTGAAAGAAAGAAGACGTAGAA 59.542 40.000 10.90 0.00 37.92 2.10
451 477 6.020121 CACGTGAAAGAAAGAAGACGTAGAAA 60.020 38.462 10.90 0.00 37.92 2.52
452 478 6.532657 ACGTGAAAGAAAGAAGACGTAGAAAA 59.467 34.615 0.00 0.00 38.21 2.29
453 479 7.063780 ACGTGAAAGAAAGAAGACGTAGAAAAA 59.936 33.333 0.00 0.00 38.21 1.94
496 522 9.322773 AGTTTTACAGTTTAAGTCTAAGGTGTC 57.677 33.333 0.00 0.00 0.00 3.67
497 523 9.322773 GTTTTACAGTTTAAGTCTAAGGTGTCT 57.677 33.333 0.00 0.00 0.00 3.41
502 528 8.027771 ACAGTTTAAGTCTAAGGTGTCTATTCG 58.972 37.037 0.00 0.00 0.00 3.34
503 529 7.488471 CAGTTTAAGTCTAAGGTGTCTATTCGG 59.512 40.741 0.00 0.00 0.00 4.30
504 530 4.388378 AAGTCTAAGGTGTCTATTCGGC 57.612 45.455 0.00 0.00 0.00 5.54
505 531 2.694109 AGTCTAAGGTGTCTATTCGGCC 59.306 50.000 0.00 0.00 0.00 6.13
506 532 1.679680 TCTAAGGTGTCTATTCGGCCG 59.320 52.381 22.12 22.12 0.00 6.13
507 533 0.103572 TAAGGTGTCTATTCGGCCGC 59.896 55.000 23.51 5.62 0.00 6.53
508 534 1.895020 AAGGTGTCTATTCGGCCGCA 61.895 55.000 23.51 11.40 0.00 5.69
509 535 2.171725 GGTGTCTATTCGGCCGCAC 61.172 63.158 23.51 20.89 0.00 5.34
510 536 2.171725 GTGTCTATTCGGCCGCACC 61.172 63.158 23.51 5.17 0.00 5.01
511 537 2.588034 GTCTATTCGGCCGCACCC 60.588 66.667 23.51 1.53 33.26 4.61
512 538 3.857038 TCTATTCGGCCGCACCCC 61.857 66.667 23.51 0.00 33.26 4.95
513 539 4.169696 CTATTCGGCCGCACCCCA 62.170 66.667 23.51 0.00 33.26 4.96
514 540 3.690685 CTATTCGGCCGCACCCCAA 62.691 63.158 23.51 9.02 33.26 4.12
515 541 3.269521 TATTCGGCCGCACCCCAAA 62.270 57.895 23.51 8.15 33.26 3.28
516 542 2.559922 TATTCGGCCGCACCCCAAAT 62.560 55.000 23.51 15.59 33.26 2.32
520 546 2.828549 GCCGCACCCCAAATCGAT 60.829 61.111 0.00 0.00 0.00 3.59
521 547 2.414785 GCCGCACCCCAAATCGATT 61.415 57.895 4.39 4.39 0.00 3.34
522 548 1.727467 CCGCACCCCAAATCGATTC 59.273 57.895 11.83 0.00 0.00 2.52
523 549 0.748005 CCGCACCCCAAATCGATTCT 60.748 55.000 11.83 0.00 0.00 2.40
524 550 1.094785 CGCACCCCAAATCGATTCTT 58.905 50.000 11.83 0.00 0.00 2.52
525 551 2.285083 CGCACCCCAAATCGATTCTTA 58.715 47.619 11.83 0.00 0.00 2.10
526 552 2.680841 CGCACCCCAAATCGATTCTTAA 59.319 45.455 11.83 0.00 0.00 1.85
527 553 3.127895 CGCACCCCAAATCGATTCTTAAA 59.872 43.478 11.83 0.00 0.00 1.52
528 554 4.380023 CGCACCCCAAATCGATTCTTAAAA 60.380 41.667 11.83 0.00 0.00 1.52
529 555 4.862574 GCACCCCAAATCGATTCTTAAAAC 59.137 41.667 11.83 0.00 0.00 2.43
530 556 5.565834 GCACCCCAAATCGATTCTTAAAACA 60.566 40.000 11.83 0.00 0.00 2.83
531 557 5.861787 CACCCCAAATCGATTCTTAAAACAC 59.138 40.000 11.83 0.00 0.00 3.32
532 558 5.092781 CCCCAAATCGATTCTTAAAACACG 58.907 41.667 11.83 0.00 0.00 4.49
533 559 5.335348 CCCCAAATCGATTCTTAAAACACGT 60.335 40.000 11.83 0.00 0.00 4.49
534 560 6.146898 CCCAAATCGATTCTTAAAACACGTT 58.853 36.000 11.83 0.00 0.00 3.99
535 561 6.639279 CCCAAATCGATTCTTAAAACACGTTT 59.361 34.615 11.83 0.00 0.00 3.60
536 562 7.168469 CCCAAATCGATTCTTAAAACACGTTTT 59.832 33.333 11.83 12.20 44.16 2.43
537 563 8.536407 CCAAATCGATTCTTAAAACACGTTTTT 58.464 29.630 11.83 11.37 42.22 1.94
538 564 9.549923 CAAATCGATTCTTAAAACACGTTTTTC 57.450 29.630 11.83 4.10 42.22 2.29
539 565 6.939953 TCGATTCTTAAAACACGTTTTTCG 57.060 33.333 12.73 14.23 42.22 3.46
553 579 4.183088 CGTTTTTCGTGAATTGAAAACGC 58.817 39.130 16.48 5.22 43.02 4.84
554 580 4.183088 GTTTTTCGTGAATTGAAAACGCG 58.817 39.130 3.53 3.53 43.02 6.01
555 581 2.025544 TTCGTGAATTGAAAACGCGG 57.974 45.000 12.47 0.00 37.24 6.46
556 582 0.938713 TCGTGAATTGAAAACGCGGT 59.061 45.000 12.47 0.00 37.24 5.68
557 583 1.331138 TCGTGAATTGAAAACGCGGTT 59.669 42.857 12.47 7.61 37.24 4.44
558 584 2.113289 CGTGAATTGAAAACGCGGTTT 58.887 42.857 24.31 24.31 37.34 3.27
559 585 3.002042 TCGTGAATTGAAAACGCGGTTTA 59.998 39.130 24.10 8.56 34.43 2.01
560 586 3.724751 CGTGAATTGAAAACGCGGTTTAA 59.275 39.130 24.10 13.48 34.43 1.52
561 587 4.143906 CGTGAATTGAAAACGCGGTTTAAG 60.144 41.667 24.10 4.13 34.43 1.85
562 588 4.147479 GTGAATTGAAAACGCGGTTTAAGG 59.853 41.667 24.10 0.00 34.43 2.69
563 589 2.778187 TTGAAAACGCGGTTTAAGGG 57.222 45.000 24.10 0.00 34.43 3.95
564 590 0.953003 TGAAAACGCGGTTTAAGGGG 59.047 50.000 24.10 0.00 34.43 4.79
565 591 0.953727 GAAAACGCGGTTTAAGGGGT 59.046 50.000 24.10 0.00 34.43 4.95
566 592 0.669619 AAAACGCGGTTTAAGGGGTG 59.330 50.000 22.70 0.00 34.43 4.61
567 593 0.466007 AAACGCGGTTTAAGGGGTGT 60.466 50.000 12.47 0.00 33.70 4.16
568 594 1.167781 AACGCGGTTTAAGGGGTGTG 61.168 55.000 12.47 0.00 0.00 3.82
569 595 2.959372 GCGGTTTAAGGGGTGTGC 59.041 61.111 0.00 0.00 0.00 4.57
570 596 1.602605 GCGGTTTAAGGGGTGTGCT 60.603 57.895 0.00 0.00 0.00 4.40
571 597 0.321830 GCGGTTTAAGGGGTGTGCTA 60.322 55.000 0.00 0.00 0.00 3.49
572 598 1.734163 CGGTTTAAGGGGTGTGCTAG 58.266 55.000 0.00 0.00 0.00 3.42
573 599 1.677820 CGGTTTAAGGGGTGTGCTAGG 60.678 57.143 0.00 0.00 0.00 3.02
574 600 1.353358 GGTTTAAGGGGTGTGCTAGGT 59.647 52.381 0.00 0.00 0.00 3.08
575 601 2.573009 GGTTTAAGGGGTGTGCTAGGTA 59.427 50.000 0.00 0.00 0.00 3.08
576 602 3.201487 GGTTTAAGGGGTGTGCTAGGTAT 59.799 47.826 0.00 0.00 0.00 2.73
577 603 4.196971 GTTTAAGGGGTGTGCTAGGTATG 58.803 47.826 0.00 0.00 0.00 2.39
578 604 1.966845 AAGGGGTGTGCTAGGTATGT 58.033 50.000 0.00 0.00 0.00 2.29
579 605 1.966845 AGGGGTGTGCTAGGTATGTT 58.033 50.000 0.00 0.00 0.00 2.71
580 606 2.275466 AGGGGTGTGCTAGGTATGTTT 58.725 47.619 0.00 0.00 0.00 2.83
581 607 2.647802 AGGGGTGTGCTAGGTATGTTTT 59.352 45.455 0.00 0.00 0.00 2.43
582 608 3.847780 AGGGGTGTGCTAGGTATGTTTTA 59.152 43.478 0.00 0.00 0.00 1.52
583 609 4.290196 AGGGGTGTGCTAGGTATGTTTTAA 59.710 41.667 0.00 0.00 0.00 1.52
584 610 5.044402 AGGGGTGTGCTAGGTATGTTTTAAT 60.044 40.000 0.00 0.00 0.00 1.40
585 611 6.159046 AGGGGTGTGCTAGGTATGTTTTAATA 59.841 38.462 0.00 0.00 0.00 0.98
586 612 7.002276 GGGGTGTGCTAGGTATGTTTTAATAT 58.998 38.462 0.00 0.00 0.00 1.28
587 613 7.040686 GGGGTGTGCTAGGTATGTTTTAATATG 60.041 40.741 0.00 0.00 0.00 1.78
588 614 7.501225 GGGTGTGCTAGGTATGTTTTAATATGT 59.499 37.037 0.00 0.00 0.00 2.29
589 615 8.899771 GGTGTGCTAGGTATGTTTTAATATGTT 58.100 33.333 0.00 0.00 0.00 2.71
590 616 9.931210 GTGTGCTAGGTATGTTTTAATATGTTC 57.069 33.333 0.00 0.00 0.00 3.18
591 617 9.899661 TGTGCTAGGTATGTTTTAATATGTTCT 57.100 29.630 0.00 0.00 0.00 3.01
776 810 2.261671 CACCCCGTTGTCTCTCGG 59.738 66.667 0.00 0.00 45.42 4.63
1075 1136 4.423209 GGCTCCCACCTCCCTCCT 62.423 72.222 0.00 0.00 0.00 3.69
1319 1548 1.246056 TGCCCATCAGTTTGCTCTGC 61.246 55.000 0.00 0.00 35.63 4.26
1359 1591 5.889219 TGCTGCTTGCGATTATAATTTGAA 58.111 33.333 0.00 0.00 46.63 2.69
1360 1592 6.506147 TGCTGCTTGCGATTATAATTTGAAT 58.494 32.000 0.00 0.00 46.63 2.57
1385 1621 3.865011 TTTGTTTGCTTCTTGTGCTCA 57.135 38.095 0.00 0.00 0.00 4.26
1571 1807 7.939039 GGGATGATCAGAGTTATGTAAATGGAA 59.061 37.037 0.09 0.00 0.00 3.53
1806 2043 4.450053 AGCTTAAGAGATGAGATGGCAAC 58.550 43.478 6.67 0.00 0.00 4.17
1829 2104 9.345517 CAACACATTTTTCATGATCGATAAAGT 57.654 29.630 0.00 0.00 0.00 2.66
1876 2435 8.849168 TCAAATTGAGTTACTGAATCACATTGT 58.151 29.630 0.00 0.00 0.00 2.71
2082 2648 4.095483 GGGTTGCATGTCTATCTGAGTTTG 59.905 45.833 0.00 0.00 0.00 2.93
2120 2686 7.976712 TGGATGACCAATTGATCATATCAGTA 58.023 34.615 15.53 0.00 43.91 2.74
2256 3157 3.699538 TGCACGGTCTCTCACAAGTATAT 59.300 43.478 0.00 0.00 0.00 0.86
2280 3181 7.246171 TCTAAATCCTAATATCCTCACTGCC 57.754 40.000 0.00 0.00 0.00 4.85
2297 3198 7.877612 CCTCACTGCCCAAAAACTAAATAAATT 59.122 33.333 0.00 0.00 0.00 1.82
2333 3234 1.944024 TGTGTTACTCCCGTTGCAAAG 59.056 47.619 0.00 2.09 0.00 2.77
2344 3245 2.598589 CGTTGCAAAGATTGTGGGATG 58.401 47.619 6.52 0.00 0.00 3.51
2378 3280 9.803507 ATTTGGCAGAATATTCTCATCTTATCA 57.196 29.630 15.24 3.06 34.74 2.15
2482 3386 6.818644 GTCTAATTTGCTATCACCTCTGTTCA 59.181 38.462 0.00 0.00 0.00 3.18
2484 3388 4.890158 TTTGCTATCACCTCTGTTCAGA 57.110 40.909 2.49 2.49 0.00 3.27
2557 3461 5.623335 TGAGTGAACAAACACACTAAAACG 58.377 37.500 0.00 0.00 45.54 3.60
2566 3470 5.752098 AACACACTAAAACGCGTCTATAC 57.248 39.130 14.44 0.00 0.00 1.47
2568 3472 5.404946 ACACACTAAAACGCGTCTATACAT 58.595 37.500 14.44 0.00 0.00 2.29
2569 3473 5.514204 ACACACTAAAACGCGTCTATACATC 59.486 40.000 14.44 0.00 0.00 3.06
2570 3474 5.039333 ACACTAAAACGCGTCTATACATCC 58.961 41.667 14.44 0.00 0.00 3.51
2630 3537 4.737578 ACGGAGGGAGCAGATATTAACTA 58.262 43.478 0.00 0.00 0.00 2.24
2633 3540 6.102663 CGGAGGGAGCAGATATTAACTATTG 58.897 44.000 0.00 0.00 0.00 1.90
2909 3847 1.408702 GGCCAGCTGTTGTTTTTCTCA 59.591 47.619 13.81 0.00 0.00 3.27
2934 3872 4.500703 CGTAATTCGTCCATGTTCTGTC 57.499 45.455 0.00 0.00 34.52 3.51
2995 3933 5.398603 ACCTGATCTATAAGATGCCGAAG 57.601 43.478 0.00 0.00 34.53 3.79
3072 4010 2.849943 TGCCCTTATGTGTCCACCTATT 59.150 45.455 0.00 0.00 0.00 1.73
3085 4023 8.044908 TGTGTCCACCTATTATTTTCTTACTCC 58.955 37.037 0.00 0.00 0.00 3.85
3165 4309 2.239681 TTTTGTGTGGTCCCCAACTT 57.760 45.000 0.00 0.00 34.18 2.66
3234 5612 1.808411 TTGCCGCTTCCTCTTGTTAG 58.192 50.000 0.00 0.00 0.00 2.34
3288 5667 8.820933 ACAAGAATTACATAATCATGTCACTCG 58.179 33.333 0.00 0.00 44.42 4.18
3371 5755 5.186797 TCCAAACAGGCTGGGTATAAAAATG 59.813 40.000 20.34 0.00 37.29 2.32
3414 5799 4.970662 AAGTTATGTTGCATGTGCTAGG 57.029 40.909 6.55 0.00 42.66 3.02
3427 5812 6.873605 TGCATGTGCTAGGATATTATGTACAC 59.126 38.462 0.00 0.00 42.66 2.90
3479 5869 4.549458 CTGCTGGTTATTGGTTGTCTTTG 58.451 43.478 0.00 0.00 0.00 2.77
3506 5896 7.573968 AAGATATCAGTTAAACAGGGAATGC 57.426 36.000 5.32 0.00 0.00 3.56
3511 5902 4.943705 TCAGTTAAACAGGGAATGCTGATC 59.056 41.667 0.00 0.00 0.00 2.92
3613 6200 1.959985 TGTGGATTGCGACATTTTGGT 59.040 42.857 0.00 0.00 0.00 3.67
3711 6298 5.221441 ACAAGCATTATATAGCCTCGTGACA 60.221 40.000 0.00 0.00 0.00 3.58
3915 6502 3.002583 TCATCAGGGCCAGTCGCA 61.003 61.111 6.18 0.00 40.31 5.10
4188 6775 1.236616 TTGCCAGATCACGCAACCTG 61.237 55.000 13.65 0.00 39.96 4.00
4479 7120 6.854496 AGCATGTTTCTTACTCGTGTAAAA 57.146 33.333 10.92 6.31 38.09 1.52
4502 7143 4.059511 TGTATACGCGTGGGAATAATTGG 58.940 43.478 24.59 0.00 0.00 3.16
4521 7165 5.818678 TTGGCTCGTGTATATAATTCCCT 57.181 39.130 0.00 0.00 0.00 4.20
4562 7206 7.492020 GTGCATTTTAATCTTGATTATGTGCCA 59.508 33.333 19.83 12.25 0.00 4.92
4699 7345 8.475331 AATTCCAGATAAATTATAGGTACGCG 57.525 34.615 3.53 3.53 0.00 6.01
4700 7346 6.579666 TCCAGATAAATTATAGGTACGCGT 57.420 37.500 19.17 19.17 0.00 6.01
4701 7347 6.615088 TCCAGATAAATTATAGGTACGCGTC 58.385 40.000 18.63 7.69 0.00 5.19
4702 7348 5.803967 CCAGATAAATTATAGGTACGCGTCC 59.196 44.000 18.63 17.45 0.00 4.79
4703 7349 5.510674 CAGATAAATTATAGGTACGCGTCCG 59.489 44.000 18.63 0.00 41.14 4.79
4704 7350 2.056094 AATTATAGGTACGCGTCCGC 57.944 50.000 18.63 7.51 38.22 5.54
4705 7351 0.242017 ATTATAGGTACGCGTCCGCC 59.758 55.000 18.63 17.25 38.22 6.13
4706 7352 2.116736 TTATAGGTACGCGTCCGCCG 62.117 60.000 18.63 4.20 38.22 6.46
4727 7373 3.139077 GGGTGATCCGTATGAAACATCC 58.861 50.000 0.00 0.00 31.04 3.51
4728 7374 2.800544 GGTGATCCGTATGAAACATCCG 59.199 50.000 0.00 0.00 0.00 4.18
4729 7375 2.221055 GTGATCCGTATGAAACATCCGC 59.779 50.000 0.00 0.00 0.00 5.54
4730 7376 1.798813 GATCCGTATGAAACATCCGCC 59.201 52.381 0.00 0.00 0.00 6.13
4731 7377 0.537653 TCCGTATGAAACATCCGCCA 59.462 50.000 0.00 0.00 0.00 5.69
4732 7378 0.655733 CCGTATGAAACATCCGCCAC 59.344 55.000 0.00 0.00 0.00 5.01
4733 7379 0.655733 CGTATGAAACATCCGCCACC 59.344 55.000 0.00 0.00 0.00 4.61
4734 7380 1.742411 CGTATGAAACATCCGCCACCT 60.742 52.381 0.00 0.00 0.00 4.00
4735 7381 1.940613 GTATGAAACATCCGCCACCTC 59.059 52.381 0.00 0.00 0.00 3.85
4736 7382 0.744414 ATGAAACATCCGCCACCTCG 60.744 55.000 0.00 0.00 0.00 4.63
4737 7383 1.079405 GAAACATCCGCCACCTCGA 60.079 57.895 0.00 0.00 0.00 4.04
4738 7384 1.359459 GAAACATCCGCCACCTCGAC 61.359 60.000 0.00 0.00 0.00 4.20
4739 7385 3.642778 AACATCCGCCACCTCGACG 62.643 63.158 0.00 0.00 0.00 5.12
4783 7429 1.216930 CCTCCCCCGACCCATTAATTT 59.783 52.381 0.00 0.00 0.00 1.82
4815 7462 1.330521 GTCGAGTTGCAGAAACAAGCA 59.669 47.619 0.00 0.00 41.61 3.91
4821 7468 1.882912 TGCAGAAACAAGCATCTCGT 58.117 45.000 0.00 0.00 35.51 4.18
4841 7488 1.079197 AGCCATTCGATGCGTGACA 60.079 52.632 0.00 0.00 0.00 3.58
4843 7490 1.361668 GCCATTCGATGCGTGACACT 61.362 55.000 3.68 0.00 0.00 3.55
4898 7545 2.536329 CGATGCTCTTGTTGCAAGATCG 60.536 50.000 11.36 13.22 44.01 3.69
4913 7560 4.202161 GCAAGATCGGGTCTTCTCTGATTA 60.202 45.833 0.00 0.00 45.35 1.75
4963 7610 5.645497 CCTCACCTTCTACAATTTTCCTGAG 59.355 44.000 0.00 0.00 0.00 3.35
4972 7619 3.315191 ACAATTTTCCTGAGACAACGGTG 59.685 43.478 0.00 0.00 0.00 4.94
5072 7719 5.448926 AAATTGCAACAACAACTTTCGTC 57.551 34.783 0.00 0.00 31.03 4.20
5112 7759 4.441792 ACAAGACCCTTGTTGCAAAAATC 58.558 39.130 1.65 0.00 28.73 2.17
5117 7764 5.585844 AGACCCTTGTTGCAAAAATCAAAAG 59.414 36.000 1.65 0.00 0.00 2.27
5137 7784 2.632028 AGAACATCTCTGCCGCATCTAT 59.368 45.455 0.00 0.00 31.12 1.98
5179 7826 0.038709 TGCAAAATTAGCACGGCCAC 60.039 50.000 2.24 0.00 37.02 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.817839 GCATACAGGACACCTTTGGGTT 60.818 50.000 0.00 0.00 44.73 4.11
3 4 1.086696 CGCATACAGGACACCTTTGG 58.913 55.000 0.00 0.00 0.00 3.28
6 7 1.447838 CGCGCATACAGGACACCTT 60.448 57.895 8.75 0.00 0.00 3.50
7 8 1.884075 TTCGCGCATACAGGACACCT 61.884 55.000 8.75 0.00 0.00 4.00
8 9 1.017177 TTTCGCGCATACAGGACACC 61.017 55.000 8.75 0.00 0.00 4.16
9 10 0.370273 CTTTCGCGCATACAGGACAC 59.630 55.000 8.75 0.00 0.00 3.67
10 11 0.245266 TCTTTCGCGCATACAGGACA 59.755 50.000 8.75 0.00 0.00 4.02
11 12 1.060698 GTTCTTTCGCGCATACAGGAC 59.939 52.381 8.75 0.00 0.00 3.85
12 13 1.355971 GTTCTTTCGCGCATACAGGA 58.644 50.000 8.75 0.00 0.00 3.86
13 14 0.025001 CGTTCTTTCGCGCATACAGG 59.975 55.000 8.75 0.00 0.00 4.00
14 15 0.713883 ACGTTCTTTCGCGCATACAG 59.286 50.000 8.75 0.00 0.00 2.74
15 16 1.136474 CAACGTTCTTTCGCGCATACA 60.136 47.619 8.75 0.00 0.00 2.29
16 17 1.510007 CAACGTTCTTTCGCGCATAC 58.490 50.000 8.75 0.00 0.00 2.39
17 18 0.440758 CCAACGTTCTTTCGCGCATA 59.559 50.000 8.75 0.00 0.00 3.14
18 19 1.206578 CCAACGTTCTTTCGCGCAT 59.793 52.632 8.75 0.00 0.00 4.73
19 20 2.629210 CCAACGTTCTTTCGCGCA 59.371 55.556 8.75 0.00 0.00 6.09
20 21 2.795389 GCCAACGTTCTTTCGCGC 60.795 61.111 0.00 0.00 0.00 6.86
21 22 2.496794 CGCCAACGTTCTTTCGCG 60.497 61.111 0.00 0.00 33.53 5.87
22 23 2.127383 CCGCCAACGTTCTTTCGC 60.127 61.111 0.00 0.00 37.70 4.70
23 24 1.897398 CTCCCGCCAACGTTCTTTCG 61.897 60.000 0.00 0.00 37.70 3.46
24 25 0.883370 ACTCCCGCCAACGTTCTTTC 60.883 55.000 0.00 0.00 37.70 2.62
25 26 0.883370 GACTCCCGCCAACGTTCTTT 60.883 55.000 0.00 0.00 37.70 2.52
26 27 1.301479 GACTCCCGCCAACGTTCTT 60.301 57.895 0.00 0.00 37.70 2.52
27 28 2.342648 GACTCCCGCCAACGTTCT 59.657 61.111 0.00 0.00 37.70 3.01
28 29 2.741211 GGACTCCCGCCAACGTTC 60.741 66.667 0.00 0.00 37.70 3.95
29 30 3.109592 TTGGACTCCCGCCAACGTT 62.110 57.895 0.00 0.00 40.32 3.99
30 31 3.552384 TTGGACTCCCGCCAACGT 61.552 61.111 0.00 0.00 40.32 3.99
42 43 1.168714 GGTTCTGATGGCAGTTGGAC 58.831 55.000 0.00 0.00 42.84 4.02
56 57 1.205893 GGAGCGAGTCATGAAGGTTCT 59.794 52.381 0.00 0.00 0.00 3.01
129 135 2.192443 CTAGCTCCTCCGTCGGGA 59.808 66.667 12.29 0.24 41.08 5.14
150 156 3.898509 AGCTCGCTGGCTCGCTAG 61.899 66.667 0.00 0.00 38.24 3.42
156 162 2.105930 GATTCGAGCTCGCTGGCT 59.894 61.111 30.97 12.76 46.11 4.75
157 163 3.326210 CGATTCGAGCTCGCTGGC 61.326 66.667 30.97 17.66 39.60 4.85
158 164 0.596083 AATCGATTCGAGCTCGCTGG 60.596 55.000 30.97 20.18 39.91 4.85
159 165 0.775273 GAATCGATTCGAGCTCGCTG 59.225 55.000 30.97 18.79 39.91 5.18
179 185 4.593864 CTAGCTCCTTCGCCCGCC 62.594 72.222 0.00 0.00 0.00 6.13
184 190 4.645692 GCTAGCTAGCTCCTTCGC 57.354 61.111 33.71 13.17 45.62 4.70
218 224 2.796735 GCTAACTAGCTCCTTCGTCTGC 60.797 54.545 0.00 0.00 45.62 4.26
244 260 2.349912 CGAGCTCGAATCGATTCAGCTA 60.350 50.000 37.01 22.24 43.98 3.32
263 279 3.893763 GCAGGAGCGAGCTAGCGA 61.894 66.667 13.42 0.00 43.00 4.93
264 280 2.967929 AATGCAGGAGCGAGCTAGCG 62.968 60.000 13.42 1.31 46.23 4.26
272 296 0.029035 GCTGAATCAATGCAGGAGCG 59.971 55.000 0.20 0.00 46.23 5.03
276 300 2.753452 ACAGAAGCTGAATCAATGCAGG 59.247 45.455 0.82 0.00 35.18 4.85
280 304 5.117355 ACAACACAGAAGCTGAATCAATG 57.883 39.130 0.82 0.00 35.18 2.82
289 313 3.498397 CGACCAAATACAACACAGAAGCT 59.502 43.478 0.00 0.00 0.00 3.74
295 319 0.869068 CGGCGACCAAATACAACACA 59.131 50.000 0.00 0.00 0.00 3.72
296 320 0.167251 CCGGCGACCAAATACAACAC 59.833 55.000 9.30 0.00 0.00 3.32
297 321 0.956410 CCCGGCGACCAAATACAACA 60.956 55.000 9.30 0.00 0.00 3.33
298 322 1.798087 CCCGGCGACCAAATACAAC 59.202 57.895 9.30 0.00 0.00 3.32
299 323 2.041686 GCCCGGCGACCAAATACAA 61.042 57.895 9.30 0.00 0.00 2.41
300 324 2.437002 GCCCGGCGACCAAATACA 60.437 61.111 9.30 0.00 0.00 2.29
314 339 1.712018 GACCAAATACGAAGCCGCCC 61.712 60.000 0.00 0.00 39.95 6.13
315 340 1.719709 GACCAAATACGAAGCCGCC 59.280 57.895 0.00 0.00 39.95 6.13
323 348 0.297820 GCTCGAAGCGACCAAATACG 59.702 55.000 0.00 0.00 0.00 3.06
356 381 1.161843 ACCGGGCAAGTACGAAATTG 58.838 50.000 6.32 0.00 0.00 2.32
357 382 1.808343 GAACCGGGCAAGTACGAAATT 59.192 47.619 6.32 0.00 0.00 1.82
359 384 0.945265 CGAACCGGGCAAGTACGAAA 60.945 55.000 6.32 0.00 0.00 3.46
360 385 1.373246 CGAACCGGGCAAGTACGAA 60.373 57.895 6.32 0.00 0.00 3.85
361 386 2.259204 CGAACCGGGCAAGTACGA 59.741 61.111 6.32 0.00 0.00 3.43
362 387 2.048877 ACGAACCGGGCAAGTACG 60.049 61.111 6.32 3.05 0.00 3.67
363 388 1.301165 ACACGAACCGGGCAAGTAC 60.301 57.895 6.32 0.00 31.12 2.73
364 389 1.301087 CACACGAACCGGGCAAGTA 60.301 57.895 6.32 0.00 31.12 2.24
365 390 2.590575 CACACGAACCGGGCAAGT 60.591 61.111 6.32 0.00 31.12 3.16
366 391 4.025401 GCACACGAACCGGGCAAG 62.025 66.667 6.32 0.00 31.12 4.01
370 395 3.041940 GACAGCACACGAACCGGG 61.042 66.667 6.32 0.00 35.82 5.73
371 396 3.041940 GGACAGCACACGAACCGG 61.042 66.667 0.00 0.00 0.00 5.28
373 398 2.279918 ACGGACAGCACACGAACC 60.280 61.111 0.00 0.00 0.00 3.62
374 399 1.548973 CTGACGGACAGCACACGAAC 61.549 60.000 0.00 0.00 39.86 3.95
387 413 1.201647 TCGCTCCTAAGAAACTGACGG 59.798 52.381 0.00 0.00 0.00 4.79
390 416 2.171840 AGCTCGCTCCTAAGAAACTGA 58.828 47.619 0.00 0.00 0.00 3.41
392 418 2.100087 GCTAGCTCGCTCCTAAGAAACT 59.900 50.000 7.70 0.00 0.00 2.66
398 424 2.484651 CGATTAGCTAGCTCGCTCCTAA 59.515 50.000 23.26 8.53 41.30 2.69
403 429 1.025812 ACACGATTAGCTAGCTCGCT 58.974 50.000 23.26 17.70 43.83 4.93
421 447 4.210746 GTCTTCTTTCTTTCACGTGGGTAC 59.789 45.833 17.00 0.00 0.00 3.34
422 448 4.374399 GTCTTCTTTCTTTCACGTGGGTA 58.626 43.478 17.00 0.00 0.00 3.69
423 449 3.203716 GTCTTCTTTCTTTCACGTGGGT 58.796 45.455 17.00 0.00 0.00 4.51
424 450 2.221055 CGTCTTCTTTCTTTCACGTGGG 59.779 50.000 17.00 6.73 0.00 4.61
425 451 2.864343 ACGTCTTCTTTCTTTCACGTGG 59.136 45.455 17.00 0.00 38.94 4.94
426 452 4.974275 TCTACGTCTTCTTTCTTTCACGTG 59.026 41.667 9.94 9.94 40.48 4.49
427 453 5.179045 TCTACGTCTTCTTTCTTTCACGT 57.821 39.130 0.00 0.00 42.69 4.49
428 454 6.506464 TTTCTACGTCTTCTTTCTTTCACG 57.494 37.500 0.00 0.00 0.00 4.35
470 496 9.322773 GACACCTTAGACTTAAACTGTAAAACT 57.677 33.333 0.00 0.00 0.00 2.66
471 497 9.322773 AGACACCTTAGACTTAAACTGTAAAAC 57.677 33.333 0.00 0.00 0.00 2.43
476 502 8.027771 CGAATAGACACCTTAGACTTAAACTGT 58.972 37.037 0.00 0.00 0.00 3.55
477 503 7.488471 CCGAATAGACACCTTAGACTTAAACTG 59.512 40.741 0.00 0.00 0.00 3.16
478 504 7.545489 CCGAATAGACACCTTAGACTTAAACT 58.455 38.462 0.00 0.00 0.00 2.66
479 505 6.255237 GCCGAATAGACACCTTAGACTTAAAC 59.745 42.308 0.00 0.00 0.00 2.01
480 506 6.335777 GCCGAATAGACACCTTAGACTTAAA 58.664 40.000 0.00 0.00 0.00 1.52
481 507 5.163478 GGCCGAATAGACACCTTAGACTTAA 60.163 44.000 0.00 0.00 0.00 1.85
482 508 4.340381 GGCCGAATAGACACCTTAGACTTA 59.660 45.833 0.00 0.00 0.00 2.24
483 509 3.132467 GGCCGAATAGACACCTTAGACTT 59.868 47.826 0.00 0.00 0.00 3.01
484 510 2.694109 GGCCGAATAGACACCTTAGACT 59.306 50.000 0.00 0.00 0.00 3.24
485 511 2.543238 CGGCCGAATAGACACCTTAGAC 60.543 54.545 24.07 0.00 0.00 2.59
486 512 1.679680 CGGCCGAATAGACACCTTAGA 59.320 52.381 24.07 0.00 0.00 2.10
487 513 1.868519 GCGGCCGAATAGACACCTTAG 60.869 57.143 33.48 0.00 0.00 2.18
488 514 0.103572 GCGGCCGAATAGACACCTTA 59.896 55.000 33.48 0.00 0.00 2.69
489 515 1.153429 GCGGCCGAATAGACACCTT 60.153 57.895 33.48 0.00 0.00 3.50
490 516 2.355986 TGCGGCCGAATAGACACCT 61.356 57.895 33.48 0.00 0.00 4.00
491 517 2.171725 GTGCGGCCGAATAGACACC 61.172 63.158 33.48 8.18 0.00 4.16
492 518 2.171725 GGTGCGGCCGAATAGACAC 61.172 63.158 33.48 24.90 0.00 3.67
493 519 2.185867 GGTGCGGCCGAATAGACA 59.814 61.111 33.48 13.85 0.00 3.41
494 520 2.588034 GGGTGCGGCCGAATAGAC 60.588 66.667 33.48 15.76 38.44 2.59
495 521 3.857038 GGGGTGCGGCCGAATAGA 61.857 66.667 33.48 2.77 38.44 1.98
496 522 3.690685 TTGGGGTGCGGCCGAATAG 62.691 63.158 33.48 0.00 38.44 1.73
497 523 2.559922 ATTTGGGGTGCGGCCGAATA 62.560 55.000 33.48 11.76 38.44 1.75
498 524 3.955543 ATTTGGGGTGCGGCCGAAT 62.956 57.895 33.48 15.16 38.44 3.34
499 525 4.669809 ATTTGGGGTGCGGCCGAA 62.670 61.111 33.48 19.06 38.44 4.30
503 529 2.336400 GAATCGATTTGGGGTGCGGC 62.336 60.000 12.81 0.00 0.00 6.53
504 530 0.748005 AGAATCGATTTGGGGTGCGG 60.748 55.000 12.81 0.00 0.00 5.69
505 531 1.094785 AAGAATCGATTTGGGGTGCG 58.905 50.000 12.81 0.00 0.00 5.34
506 532 4.712122 TTTAAGAATCGATTTGGGGTGC 57.288 40.909 12.81 0.00 0.00 5.01
507 533 5.861787 GTGTTTTAAGAATCGATTTGGGGTG 59.138 40.000 12.81 0.00 0.00 4.61
508 534 5.335348 CGTGTTTTAAGAATCGATTTGGGGT 60.335 40.000 12.81 0.00 0.00 4.95
509 535 5.092781 CGTGTTTTAAGAATCGATTTGGGG 58.907 41.667 12.81 0.00 0.00 4.96
510 536 5.695818 ACGTGTTTTAAGAATCGATTTGGG 58.304 37.500 12.81 0.00 0.00 4.12
511 537 7.617533 AAACGTGTTTTAAGAATCGATTTGG 57.382 32.000 12.81 0.00 0.00 3.28
512 538 9.549923 GAAAAACGTGTTTTAAGAATCGATTTG 57.450 29.630 12.81 0.00 41.45 2.32
513 539 8.466026 CGAAAAACGTGTTTTAAGAATCGATTT 58.534 29.630 12.81 0.00 41.45 2.17
514 540 7.977985 CGAAAAACGTGTTTTAAGAATCGATT 58.022 30.769 11.20 11.20 41.45 3.34
515 541 7.529357 CGAAAAACGTGTTTTAAGAATCGAT 57.471 32.000 17.63 0.00 41.45 3.59
516 542 6.939953 CGAAAAACGTGTTTTAAGAATCGA 57.060 33.333 17.63 0.00 41.45 3.59
531 557 4.183088 GCGTTTTCAATTCACGAAAAACG 58.817 39.130 21.07 21.07 42.34 3.60
532 558 4.183088 CGCGTTTTCAATTCACGAAAAAC 58.817 39.130 0.00 0.00 42.34 2.43
533 559 3.240861 CCGCGTTTTCAATTCACGAAAAA 59.759 39.130 4.92 0.00 42.34 1.94
534 560 2.784380 CCGCGTTTTCAATTCACGAAAA 59.216 40.909 4.92 0.00 39.42 2.29
535 561 2.223294 ACCGCGTTTTCAATTCACGAAA 60.223 40.909 4.92 0.00 35.93 3.46
536 562 1.331138 ACCGCGTTTTCAATTCACGAA 59.669 42.857 4.92 0.00 35.93 3.85
537 563 0.938713 ACCGCGTTTTCAATTCACGA 59.061 45.000 4.92 0.00 35.93 4.35
538 564 1.749153 AACCGCGTTTTCAATTCACG 58.251 45.000 4.92 0.00 36.98 4.35
539 565 4.147479 CCTTAAACCGCGTTTTCAATTCAC 59.853 41.667 4.43 0.00 37.01 3.18
540 566 4.291783 CCTTAAACCGCGTTTTCAATTCA 58.708 39.130 4.43 0.00 37.01 2.57
541 567 3.671459 CCCTTAAACCGCGTTTTCAATTC 59.329 43.478 4.43 0.00 37.01 2.17
542 568 3.553302 CCCCTTAAACCGCGTTTTCAATT 60.553 43.478 4.43 0.00 37.01 2.32
543 569 2.029739 CCCCTTAAACCGCGTTTTCAAT 60.030 45.455 4.43 0.00 37.01 2.57
544 570 1.337387 CCCCTTAAACCGCGTTTTCAA 59.663 47.619 4.43 0.00 37.01 2.69
545 571 0.953003 CCCCTTAAACCGCGTTTTCA 59.047 50.000 4.43 0.00 37.01 2.69
546 572 0.953727 ACCCCTTAAACCGCGTTTTC 59.046 50.000 4.43 0.00 37.01 2.29
547 573 0.669619 CACCCCTTAAACCGCGTTTT 59.330 50.000 6.89 6.89 37.01 2.43
548 574 0.466007 ACACCCCTTAAACCGCGTTT 60.466 50.000 4.92 8.57 39.24 3.60
549 575 1.148949 ACACCCCTTAAACCGCGTT 59.851 52.632 4.92 0.00 0.00 4.84
550 576 1.598685 CACACCCCTTAAACCGCGT 60.599 57.895 4.92 0.00 0.00 6.01
551 577 2.973316 GCACACCCCTTAAACCGCG 61.973 63.158 0.00 0.00 0.00 6.46
552 578 0.321830 TAGCACACCCCTTAAACCGC 60.322 55.000 0.00 0.00 0.00 5.68
553 579 1.677820 CCTAGCACACCCCTTAAACCG 60.678 57.143 0.00 0.00 0.00 4.44
554 580 1.353358 ACCTAGCACACCCCTTAAACC 59.647 52.381 0.00 0.00 0.00 3.27
555 581 2.873094 ACCTAGCACACCCCTTAAAC 57.127 50.000 0.00 0.00 0.00 2.01
556 582 3.847780 ACATACCTAGCACACCCCTTAAA 59.152 43.478 0.00 0.00 0.00 1.52
557 583 3.456842 ACATACCTAGCACACCCCTTAA 58.543 45.455 0.00 0.00 0.00 1.85
558 584 3.124856 ACATACCTAGCACACCCCTTA 57.875 47.619 0.00 0.00 0.00 2.69
559 585 1.966845 ACATACCTAGCACACCCCTT 58.033 50.000 0.00 0.00 0.00 3.95
560 586 1.966845 AACATACCTAGCACACCCCT 58.033 50.000 0.00 0.00 0.00 4.79
561 587 2.801077 AAACATACCTAGCACACCCC 57.199 50.000 0.00 0.00 0.00 4.95
562 588 7.501225 ACATATTAAAACATACCTAGCACACCC 59.499 37.037 0.00 0.00 0.00 4.61
563 589 8.446599 ACATATTAAAACATACCTAGCACACC 57.553 34.615 0.00 0.00 0.00 4.16
564 590 9.931210 GAACATATTAAAACATACCTAGCACAC 57.069 33.333 0.00 0.00 0.00 3.82
565 591 9.899661 AGAACATATTAAAACATACCTAGCACA 57.100 29.630 0.00 0.00 0.00 4.57
590 616 9.877178 ACCTGTGTATATCAGAGAAAAAGTTAG 57.123 33.333 8.75 0.00 39.43 2.34
591 617 9.653287 CACCTGTGTATATCAGAGAAAAAGTTA 57.347 33.333 8.75 0.00 39.43 2.24
592 618 8.375506 TCACCTGTGTATATCAGAGAAAAAGTT 58.624 33.333 8.75 0.00 39.43 2.66
593 619 7.907389 TCACCTGTGTATATCAGAGAAAAAGT 58.093 34.615 8.75 0.00 39.43 2.66
594 620 8.777865 TTCACCTGTGTATATCAGAGAAAAAG 57.222 34.615 8.75 0.00 39.43 2.27
595 621 9.166173 CATTCACCTGTGTATATCAGAGAAAAA 57.834 33.333 8.75 0.00 39.43 1.94
596 622 8.321353 ACATTCACCTGTGTATATCAGAGAAAA 58.679 33.333 8.75 1.24 39.43 2.29
597 623 7.765819 CACATTCACCTGTGTATATCAGAGAAA 59.234 37.037 8.75 2.49 41.29 2.52
598 624 7.124147 TCACATTCACCTGTGTATATCAGAGAA 59.876 37.037 4.33 11.08 45.40 2.87
599 625 6.607198 TCACATTCACCTGTGTATATCAGAGA 59.393 38.462 4.33 4.98 45.40 3.10
600 626 6.809869 TCACATTCACCTGTGTATATCAGAG 58.190 40.000 4.33 2.34 45.40 3.35
601 627 6.790232 TCACATTCACCTGTGTATATCAGA 57.210 37.500 4.33 0.00 45.40 3.27
602 628 7.848223 TTTCACATTCACCTGTGTATATCAG 57.152 36.000 4.33 2.23 45.40 2.90
603 629 7.828717 ACATTTCACATTCACCTGTGTATATCA 59.171 33.333 4.33 0.00 45.40 2.15
604 630 8.124823 CACATTTCACATTCACCTGTGTATATC 58.875 37.037 4.33 0.00 45.40 1.63
605 631 7.611467 ACACATTTCACATTCACCTGTGTATAT 59.389 33.333 3.79 0.00 45.40 0.86
606 632 6.939730 ACACATTTCACATTCACCTGTGTATA 59.060 34.615 3.79 0.00 45.40 1.47
607 633 5.769662 ACACATTTCACATTCACCTGTGTAT 59.230 36.000 3.79 0.00 45.40 2.29
608 634 5.129634 ACACATTTCACATTCACCTGTGTA 58.870 37.500 3.79 0.00 45.40 2.90
609 635 3.953612 ACACATTTCACATTCACCTGTGT 59.046 39.130 4.33 0.00 45.40 3.72
951 1004 0.032217 AAGGCAGGAGAGAGGAGGAG 60.032 60.000 0.00 0.00 0.00 3.69
996 1057 2.571757 GAGGTGGACGACATGCGA 59.428 61.111 14.88 0.00 44.57 5.10
1319 1548 3.766151 CAGCATGCCATTTTGACACTAG 58.234 45.455 15.66 0.00 0.00 2.57
1385 1621 2.754186 GCCTCCATCCCTAAATGCACAT 60.754 50.000 0.00 0.00 0.00 3.21
1432 1668 1.663643 GTTGTTGACACGTCTTGCTCA 59.336 47.619 0.00 0.00 0.00 4.26
1571 1807 1.873591 CTGCGCTCTAACAAACCAGTT 59.126 47.619 9.73 0.00 35.55 3.16
1796 2033 5.472148 TCATGAAAAATGTGTTGCCATCTC 58.528 37.500 0.00 0.00 0.00 2.75
1829 2104 6.709018 TGATGGAGTAATTCACGATGTCTA 57.291 37.500 0.00 0.00 0.00 2.59
1876 2435 5.671493 GCCTCCAGTTAATGCTAGTAGAAA 58.329 41.667 0.00 0.00 0.00 2.52
1953 2512 5.104374 CACAAACAGAGAAAAGCACATGTT 58.896 37.500 0.00 0.00 32.55 2.71
2082 2648 4.403734 TGGTCATCCAAAAGGTTCCTTAC 58.596 43.478 4.43 0.00 41.25 2.34
2150 3049 9.688091 TGGCAGGTATTCATAAACTTATAAACA 57.312 29.630 0.00 0.00 0.00 2.83
2177 3076 2.292828 AGTGTAGTGCAGCCCAAAAT 57.707 45.000 0.00 0.00 0.00 1.82
2256 3157 6.213600 GGGCAGTGAGGATATTAGGATTTAGA 59.786 42.308 0.00 0.00 0.00 2.10
2271 3172 4.871933 ATTTAGTTTTTGGGCAGTGAGG 57.128 40.909 0.00 0.00 0.00 3.86
2323 3224 0.958091 TCCCACAATCTTTGCAACGG 59.042 50.000 0.00 0.00 0.00 4.44
2333 3234 6.680378 GCCAAATAAGTACACATCCCACAATC 60.680 42.308 0.00 0.00 0.00 2.67
2344 3245 9.109393 TGAGAATATTCTGCCAAATAAGTACAC 57.891 33.333 22.61 3.09 37.73 2.90
2429 3333 4.615912 GCACTGAACAAATATGAACGCCTT 60.616 41.667 0.00 0.00 0.00 4.35
2557 3461 4.421033 TCTGAATCGGATGTATAGACGC 57.579 45.455 0.00 0.00 0.00 5.19
2658 3565 9.300681 TGATTCATAGGACAAAATCAAAGTCTT 57.699 29.630 0.00 0.00 35.72 3.01
2659 3566 8.868522 TGATTCATAGGACAAAATCAAAGTCT 57.131 30.769 0.00 0.00 35.72 3.24
2661 3568 9.865321 CATTGATTCATAGGACAAAATCAAAGT 57.135 29.630 11.90 0.00 45.80 2.66
2664 3571 9.465199 TCTCATTGATTCATAGGACAAAATCAA 57.535 29.630 10.67 10.67 46.36 2.57
2665 3572 9.465199 TTCTCATTGATTCATAGGACAAAATCA 57.535 29.630 0.00 0.00 36.59 2.57
2707 3614 9.232473 GTTTCCTGTAGATTTTCCTTTATCTGT 57.768 33.333 0.00 0.00 33.38 3.41
2951 3889 8.514594 CAGGTTCACATTTAATATGTCTGTGTT 58.485 33.333 0.00 0.00 38.61 3.32
2974 3912 4.180057 GCTTCGGCATCTTATAGATCAGG 58.820 47.826 0.00 0.00 41.33 3.86
2995 3933 4.396790 TCCAAAATAAAGTATCCACGTGGC 59.603 41.667 30.25 16.07 34.44 5.01
3113 4257 8.046708 ACAGAACATTATGGTAATGCAGAGTAA 58.953 33.333 9.06 0.00 0.00 2.24
3154 4298 3.731726 GCAGGAGCTAAGTTGGGGACC 62.732 61.905 0.00 0.00 44.42 4.46
3204 4350 2.094752 GGAAGCGGCAAAATTCTAAGCA 60.095 45.455 1.45 0.00 0.00 3.91
3234 5612 2.150051 CCCCATCCCTGTAGCCCTC 61.150 68.421 0.00 0.00 0.00 4.30
3333 5714 2.351924 TTTGGAGTGGCCCCTGTGTC 62.352 60.000 0.00 0.00 34.97 3.67
3371 5755 8.405418 ACTTATTTTTCTTTAGAGGGGAACAC 57.595 34.615 0.00 0.00 0.00 3.32
3401 5786 7.387673 GTGTACATAATATCCTAGCACATGCAA 59.612 37.037 6.64 0.00 45.16 4.08
3506 5896 9.578439 TGCTAAGACATCATTATATTCGATCAG 57.422 33.333 0.00 0.00 0.00 2.90
3613 6200 2.554344 GCACTATCCAGGAACCCACAAA 60.554 50.000 0.00 0.00 0.00 2.83
3711 6298 2.307098 AGCAAGGCCTTCAGTTATGTCT 59.693 45.455 17.29 2.38 0.00 3.41
3915 6502 1.291033 TGCTCTACACTGGATACCCCT 59.709 52.381 0.00 0.00 35.38 4.79
4188 6775 0.099436 GAAGCACCATCGATGCCAAC 59.901 55.000 20.25 8.64 44.53 3.77
4299 6895 4.916041 ATGAGAACACAATGGAAGGAGA 57.084 40.909 0.00 0.00 0.00 3.71
4308 6904 5.244402 TCTCCATGCAAAATGAGAACACAAT 59.756 36.000 0.00 0.00 0.00 2.71
4479 7120 4.693566 CCAATTATTCCCACGCGTATACAT 59.306 41.667 13.44 4.84 0.00 2.29
4546 7190 8.523915 TGTATTTCTTGGCACATAATCAAGAT 57.476 30.769 5.93 0.00 44.00 2.40
4706 7352 3.139077 GGATGTTTCATACGGATCACCC 58.861 50.000 0.00 0.00 0.00 4.61
4707 7353 2.800544 CGGATGTTTCATACGGATCACC 59.199 50.000 6.48 0.00 0.00 4.02
4708 7354 2.221055 GCGGATGTTTCATACGGATCAC 59.779 50.000 14.72 0.00 0.00 3.06
4709 7355 2.479837 GCGGATGTTTCATACGGATCA 58.520 47.619 14.72 0.00 0.00 2.92
4710 7356 1.798813 GGCGGATGTTTCATACGGATC 59.201 52.381 14.72 0.45 0.00 3.36
4711 7357 1.140052 TGGCGGATGTTTCATACGGAT 59.860 47.619 14.72 0.00 0.00 4.18
4712 7358 0.537653 TGGCGGATGTTTCATACGGA 59.462 50.000 14.72 0.00 0.00 4.69
4713 7359 0.655733 GTGGCGGATGTTTCATACGG 59.344 55.000 14.72 0.00 0.00 4.02
4714 7360 0.655733 GGTGGCGGATGTTTCATACG 59.344 55.000 9.62 9.62 0.00 3.06
4715 7361 1.940613 GAGGTGGCGGATGTTTCATAC 59.059 52.381 0.00 0.00 0.00 2.39
4716 7362 1.472552 CGAGGTGGCGGATGTTTCATA 60.473 52.381 0.00 0.00 0.00 2.15
4717 7363 0.744414 CGAGGTGGCGGATGTTTCAT 60.744 55.000 0.00 0.00 0.00 2.57
4718 7364 1.375396 CGAGGTGGCGGATGTTTCA 60.375 57.895 0.00 0.00 0.00 2.69
4719 7365 1.079405 TCGAGGTGGCGGATGTTTC 60.079 57.895 0.00 0.00 0.00 2.78
4720 7366 1.375523 GTCGAGGTGGCGGATGTTT 60.376 57.895 0.00 0.00 0.00 2.83
4721 7367 2.264794 GTCGAGGTGGCGGATGTT 59.735 61.111 0.00 0.00 0.00 2.71
4722 7368 4.129737 CGTCGAGGTGGCGGATGT 62.130 66.667 0.00 0.00 0.00 3.06
4729 7375 2.125912 CAGAAGCCGTCGAGGTGG 60.126 66.667 4.18 0.00 43.70 4.61
4730 7376 2.125912 CCAGAAGCCGTCGAGGTG 60.126 66.667 4.18 0.00 43.70 4.00
4731 7377 4.070552 GCCAGAAGCCGTCGAGGT 62.071 66.667 4.18 0.00 43.70 3.85
4783 7429 2.476519 GCAACTCGACCGTTGTTTCAAA 60.477 45.455 16.21 0.00 44.61 2.69
4815 7462 1.871408 GCATCGAATGGCTCACGAGAT 60.871 52.381 0.00 0.00 39.31 2.75
4821 7468 1.083806 GTCACGCATCGAATGGCTCA 61.084 55.000 0.00 0.00 0.00 4.26
4841 7488 1.757699 GAGGAGGATTGAACGGCTAGT 59.242 52.381 0.00 0.00 0.00 2.57
4843 7490 2.032620 GAGAGGAGGATTGAACGGCTA 58.967 52.381 0.00 0.00 0.00 3.93
4898 7545 5.187186 TGTTACAGGTAATCAGAGAAGACCC 59.813 44.000 0.00 0.00 0.00 4.46
4934 7581 6.264518 GGAAAATTGTAGAAGGTGAGGTTTCA 59.735 38.462 0.00 0.00 0.00 2.69
4963 7610 0.531974 TCTGCAACTCCACCGTTGTC 60.532 55.000 5.68 0.06 44.61 3.18
4972 7619 0.663153 ACGCTTGTTTCTGCAACTCC 59.337 50.000 0.00 0.00 36.21 3.85
5072 7719 3.181826 TGTTGCAGAAAATTAGACGCG 57.818 42.857 3.53 3.53 0.00 6.01
5112 7759 1.536766 TGCGGCAGAGATGTTCTTTTG 59.463 47.619 0.00 0.00 32.41 2.44
5117 7764 2.515926 TAGATGCGGCAGAGATGTTC 57.484 50.000 9.25 0.00 0.00 3.18
5137 7784 2.151502 TGGGTCCTGTTGCAGAAAAA 57.848 45.000 0.00 0.00 32.44 1.94
5179 7826 2.202932 CACTCGCTTCCCCATCCG 60.203 66.667 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.