Multiple sequence alignment - TraesCS6B01G140700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G140700 chr6B 100.000 5406 0 0 1 5406 140088626 140094031 0.000000e+00 9984.0
1 TraesCS6B01G140700 chr6D 84.685 1541 126 50 924 2408 65088198 65089684 0.000000e+00 1437.0
2 TraesCS6B01G140700 chr6D 88.326 1165 100 12 3398 4542 65090697 65091845 0.000000e+00 1365.0
3 TraesCS6B01G140700 chr6D 85.429 652 72 17 2681 3319 65090027 65090668 0.000000e+00 656.0
4 TraesCS6B01G140700 chr6D 91.990 412 30 2 4996 5406 65092527 65092936 4.700000e-160 575.0
5 TraesCS6B01G140700 chr6D 94.265 279 12 3 4719 4996 65092130 65092405 1.800000e-114 424.0
6 TraesCS6B01G140700 chr6D 91.139 79 7 0 4640 4718 65092026 65092104 2.060000e-19 108.0
7 TraesCS6B01G140700 chr6D 97.727 44 1 0 4552 4595 65091871 65091914 5.810000e-10 76.8
8 TraesCS6B01G140700 chr2A 95.887 851 33 1 1 849 641598894 641599744 0.000000e+00 1376.0
9 TraesCS6B01G140700 chr2A 95.770 851 34 1 1 849 592831416 592830566 0.000000e+00 1371.0
10 TraesCS6B01G140700 chr2B 95.545 853 34 2 1 849 25740920 25740068 0.000000e+00 1362.0
11 TraesCS6B01G140700 chr4A 95.535 851 36 1 1 849 583934965 583935815 0.000000e+00 1360.0
12 TraesCS6B01G140700 chr3B 95.740 845 35 1 1 845 537419096 537418253 0.000000e+00 1360.0
13 TraesCS6B01G140700 chr6A 89.732 1081 84 9 3484 4542 83648794 83647719 0.000000e+00 1356.0
14 TraesCS6B01G140700 chr6A 88.457 797 43 21 877 1638 83650761 83649979 0.000000e+00 917.0
15 TraesCS6B01G140700 chr6A 90.120 415 31 8 4997 5406 83647168 83646759 1.030000e-146 531.0
16 TraesCS6B01G140700 chr6A 81.443 679 69 23 1762 2408 83649948 83649295 2.250000e-138 503.0
17 TraesCS6B01G140700 chr6A 94.505 273 14 1 4725 4996 83647567 83647295 2.330000e-113 420.0
18 TraesCS6B01G140700 chr6A 91.071 56 3 2 4937 4990 83363924 83363869 2.090000e-09 75.0
19 TraesCS6B01G140700 chr6A 100.000 30 0 0 4566 4595 83647678 83647649 7.560000e-04 56.5
20 TraesCS6B01G140700 chr1B 95.417 851 37 1 1 849 340460489 340459639 0.000000e+00 1354.0
21 TraesCS6B01G140700 chr5D 95.621 845 32 3 1 842 36487201 36488043 0.000000e+00 1351.0
22 TraesCS6B01G140700 chr4D 95.514 847 33 2 1 842 498606692 498607538 0.000000e+00 1349.0
23 TraesCS6B01G140700 chr7B 95.076 853 38 2 1 849 21255588 21256440 0.000000e+00 1339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G140700 chr6B 140088626 140094031 5405 False 9984.000000 9984 100.000000 1 5406 1 chr6B.!!$F1 5405
1 TraesCS6B01G140700 chr6D 65088198 65092936 4738 False 663.114286 1437 90.508714 924 5406 7 chr6D.!!$F1 4482
2 TraesCS6B01G140700 chr2A 641598894 641599744 850 False 1376.000000 1376 95.887000 1 849 1 chr2A.!!$F1 848
3 TraesCS6B01G140700 chr2A 592830566 592831416 850 True 1371.000000 1371 95.770000 1 849 1 chr2A.!!$R1 848
4 TraesCS6B01G140700 chr2B 25740068 25740920 852 True 1362.000000 1362 95.545000 1 849 1 chr2B.!!$R1 848
5 TraesCS6B01G140700 chr4A 583934965 583935815 850 False 1360.000000 1360 95.535000 1 849 1 chr4A.!!$F1 848
6 TraesCS6B01G140700 chr3B 537418253 537419096 843 True 1360.000000 1360 95.740000 1 845 1 chr3B.!!$R1 844
7 TraesCS6B01G140700 chr6A 83646759 83650761 4002 True 630.583333 1356 90.709500 877 5406 6 chr6A.!!$R2 4529
8 TraesCS6B01G140700 chr1B 340459639 340460489 850 True 1354.000000 1354 95.417000 1 849 1 chr1B.!!$R1 848
9 TraesCS6B01G140700 chr5D 36487201 36488043 842 False 1351.000000 1351 95.621000 1 842 1 chr5D.!!$F1 841
10 TraesCS6B01G140700 chr4D 498606692 498607538 846 False 1349.000000 1349 95.514000 1 842 1 chr4D.!!$F1 841
11 TraesCS6B01G140700 chr7B 21255588 21256440 852 False 1339.000000 1339 95.076000 1 849 1 chr7B.!!$F1 848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 645 0.037139 CGGGAATTGTACCGTGGTCA 60.037 55.0 0.0 0.0 44.85 4.02 F
963 975 0.178975 ACAGAGGAGGAGGCGATAGG 60.179 60.0 0.0 0.0 0.00 2.57 F
2580 2708 0.319297 GTGCAAAAGCCTTGAGCCTG 60.319 55.0 0.0 0.0 45.47 4.85 F
3357 3537 0.035056 ACCACTCCATAGCAACCTGC 60.035 55.0 0.0 0.0 45.46 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2623 2751 0.035820 TTCATGTAGGGTGAACGGGC 60.036 55.0 0.00 0.0 31.07 6.13 R
2858 3031 0.108138 ACATTTAGCTCCTTCGCGCT 60.108 50.0 5.56 0.0 40.15 5.92 R
3416 3596 0.170561 CAGGCTCAGCTCATGCAAAC 59.829 55.0 0.00 0.0 42.74 2.93 R
4722 5011 0.235144 CATAGCTGAGCTGCATTCGC 59.765 55.0 18.79 0.0 40.10 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 66 1.380650 GCCGGTTCCCTCTCTCTCT 60.381 63.158 1.90 0.00 0.00 3.10
110 116 3.236003 AACCTCGGGTCTGTTCGCC 62.236 63.158 0.00 0.00 33.12 5.54
151 157 0.763223 AGGGTTGAGGGAGACGTTGT 60.763 55.000 0.00 0.00 0.00 3.32
172 178 2.831284 GGCCGTTGTGGTGGTGTT 60.831 61.111 0.00 0.00 41.21 3.32
188 194 2.159747 GGTGTTGCGTCGGAATAAGTTC 60.160 50.000 1.49 0.00 0.00 3.01
483 492 1.605058 CTGGACCGGTCGGATGACTT 61.605 60.000 27.68 0.00 44.83 3.01
497 506 4.676723 CGGATGACTTGAGTTCTCTTCCTC 60.677 50.000 1.53 0.00 0.00 3.71
533 542 0.669318 TCGCGGTACTCAAAGCCAAG 60.669 55.000 6.13 0.00 0.00 3.61
636 645 0.037139 CGGGAATTGTACCGTGGTCA 60.037 55.000 0.00 0.00 44.85 4.02
842 851 7.433708 TTGTACTGATTCGTGATTTGAATGT 57.566 32.000 0.00 0.00 36.24 2.71
878 887 8.994429 TTTTAAAAGAGACAACAATCTTTGCA 57.006 26.923 0.00 0.00 43.25 4.08
879 888 8.633075 TTTAAAAGAGACAACAATCTTTGCAG 57.367 30.769 1.28 0.00 43.25 4.41
880 889 6.455360 AAAAGAGACAACAATCTTTGCAGA 57.545 33.333 1.28 0.00 43.25 4.26
881 890 6.645790 AAAGAGACAACAATCTTTGCAGAT 57.354 33.333 0.00 0.00 42.62 2.90
883 892 6.645790 AGAGACAACAATCTTTGCAGATTT 57.354 33.333 0.00 0.00 46.07 2.17
884 893 6.675987 AGAGACAACAATCTTTGCAGATTTC 58.324 36.000 0.00 0.00 46.07 2.17
924 933 4.505324 AATAGCCTAAACAGAACCCCTC 57.495 45.455 0.00 0.00 0.00 4.30
942 954 3.570125 CCCTCTTCCACAAAAAGAACCTC 59.430 47.826 0.00 0.00 32.60 3.85
963 975 0.178975 ACAGAGGAGGAGGCGATAGG 60.179 60.000 0.00 0.00 0.00 2.57
966 978 0.963225 GAGGAGGAGGCGATAGGAAC 59.037 60.000 0.00 0.00 0.00 3.62
1241 1264 1.740025 GCTGAATCCAACACCTGTAGC 59.260 52.381 0.00 0.00 0.00 3.58
1265 1307 2.961536 TCCTGGATCCAAGAACCCTA 57.038 50.000 17.00 0.00 0.00 3.53
1295 1337 3.262420 CTGAACCCGAATCAAGAACGAT 58.738 45.455 0.00 0.00 0.00 3.73
1302 1344 3.307242 CCGAATCAAGAACGATGTTCCTC 59.693 47.826 6.09 0.00 0.00 3.71
1323 1365 1.061111 TGGATCTGGATCAGGATGGGT 60.061 52.381 11.93 0.00 39.54 4.51
1325 1367 2.444766 GGATCTGGATCAGGATGGGTTT 59.555 50.000 11.93 0.00 39.54 3.27
1326 1368 3.484407 GATCTGGATCAGGATGGGTTTG 58.516 50.000 5.79 0.00 37.74 2.93
1327 1369 2.561187 TCTGGATCAGGATGGGTTTGA 58.439 47.619 0.00 0.00 36.16 2.69
1328 1370 3.125656 TCTGGATCAGGATGGGTTTGAT 58.874 45.455 0.00 0.00 36.16 2.57
1348 1390 5.757886 TGATTTGTTGACCTCGATTTTCAC 58.242 37.500 0.00 0.00 0.00 3.18
1473 1515 2.778679 GACAACGATGAGGTGCGC 59.221 61.111 0.00 0.00 42.61 6.09
1488 1530 2.106938 CGCATTCCGCCAGCTCTA 59.893 61.111 0.00 0.00 37.30 2.43
1502 1544 3.553096 CCAGCTCTATTGTATCCCGTGTC 60.553 52.174 0.00 0.00 0.00 3.67
1510 1552 1.686587 TGTATCCCGTGTCCATAGCTG 59.313 52.381 0.00 0.00 0.00 4.24
1549 1593 4.751060 TCACGGTCACACCAATTAGATAC 58.249 43.478 0.00 0.00 38.47 2.24
1552 1596 4.142004 ACGGTCACACCAATTAGATACTCC 60.142 45.833 0.00 0.00 38.47 3.85
1557 1601 6.041069 GTCACACCAATTAGATACTCCTAGCT 59.959 42.308 0.00 0.00 0.00 3.32
1561 1605 9.160412 ACACCAATTAGATACTCCTAGCTAATT 57.840 33.333 0.00 0.00 45.92 1.40
1614 1669 1.132834 TGTGCGCTAATCATTTGGCTG 59.867 47.619 9.73 0.00 37.20 4.85
1622 1677 5.039333 GCTAATCATTTGGCTGTGCTAAAG 58.961 41.667 7.13 1.13 41.80 1.85
1626 1681 1.909700 TTTGGCTGTGCTAAAGGGAG 58.090 50.000 0.00 0.00 34.30 4.30
1633 1688 4.451900 GCTGTGCTAAAGGGAGCTTAATA 58.548 43.478 0.00 0.00 43.27 0.98
1639 1694 4.821805 GCTAAAGGGAGCTTAATATGCACA 59.178 41.667 0.00 0.00 39.50 4.57
1649 1704 5.942236 AGCTTAATATGCACATGATAGGGTG 59.058 40.000 0.00 0.00 38.05 4.61
1672 1727 7.012421 GGTGATGGGTGATTCTACTGTTATTTC 59.988 40.741 0.00 0.00 0.00 2.17
1675 1730 8.738645 ATGGGTGATTCTACTGTTATTTCTTC 57.261 34.615 0.00 0.00 0.00 2.87
1676 1731 7.918076 TGGGTGATTCTACTGTTATTTCTTCT 58.082 34.615 0.00 0.00 0.00 2.85
1677 1732 8.041323 TGGGTGATTCTACTGTTATTTCTTCTC 58.959 37.037 0.00 0.00 0.00 2.87
1678 1733 8.261522 GGGTGATTCTACTGTTATTTCTTCTCT 58.738 37.037 0.00 0.00 0.00 3.10
1679 1734 9.092876 GGTGATTCTACTGTTATTTCTTCTCTG 57.907 37.037 0.00 0.00 0.00 3.35
1680 1735 9.646427 GTGATTCTACTGTTATTTCTTCTCTGT 57.354 33.333 0.00 0.00 0.00 3.41
1733 1788 9.073475 TGAAATAAGTATATTTGGGTACATGCC 57.927 33.333 0.00 0.00 40.87 4.40
1770 1825 7.898309 CGAAAGTACTGCATAATACAAGTGAAC 59.102 37.037 0.00 0.00 0.00 3.18
1787 1842 0.916809 AACTTAGGCGGGCTACCAAT 59.083 50.000 11.20 0.00 36.13 3.16
1832 1887 7.745620 AACTAATTAACAAGACAACTCCCAG 57.254 36.000 0.00 0.00 0.00 4.45
1842 1897 1.963515 ACAACTCCCAGCAAATTGACC 59.036 47.619 0.00 0.00 0.00 4.02
1869 1924 2.202566 GCTAATTGCTACGACCAGGAC 58.797 52.381 0.00 0.00 38.95 3.85
1884 1939 2.568509 CCAGGACAAATGGCAAGGAAAT 59.431 45.455 0.00 0.00 0.00 2.17
1927 1984 7.042335 CCTCGAAATTACACTCCTACTTGATT 58.958 38.462 0.00 0.00 0.00 2.57
1929 1986 7.837863 TCGAAATTACACTCCTACTTGATTCT 58.162 34.615 0.00 0.00 0.00 2.40
1971 2037 3.507622 GCTCTGTTAAATGCTTCCCTTGT 59.492 43.478 0.00 0.00 0.00 3.16
1980 2046 3.726557 TGCTTCCCTTGTCATCTGATT 57.273 42.857 0.00 0.00 0.00 2.57
1983 2049 4.943705 TGCTTCCCTTGTCATCTGATTTAC 59.056 41.667 0.00 0.00 0.00 2.01
2005 2071 2.409948 GCTCCCTGCACTTATGAAGT 57.590 50.000 0.00 0.00 44.06 3.01
2009 2075 4.991687 GCTCCCTGCACTTATGAAGTATAC 59.008 45.833 0.00 0.00 40.46 1.47
2086 2152 9.709495 ATGTTTTATGTCATTGTTAGCACATTT 57.291 25.926 0.00 0.00 31.83 2.32
2087 2153 8.976471 TGTTTTATGTCATTGTTAGCACATTTG 58.024 29.630 0.00 0.00 31.83 2.32
2100 2166 5.796424 AGCACATTTGAGACATTTCCTTT 57.204 34.783 0.00 0.00 0.00 3.11
2134 2200 0.461339 TCGAAATACAGGCGCCTTCC 60.461 55.000 30.60 11.14 0.00 3.46
2166 2232 3.737559 ATTGCCCTCCATACTTCACAA 57.262 42.857 0.00 0.00 0.00 3.33
2209 2275 4.577693 TCCATTTGCTAGCTTGCTGAATAG 59.422 41.667 20.64 13.19 0.00 1.73
2236 2302 4.478206 TTTCCTTCTCGAGCAAGATCAT 57.522 40.909 19.73 0.00 0.00 2.45
2245 2311 3.133542 TCGAGCAAGATCATGTCCTTCAT 59.866 43.478 0.00 0.00 37.22 2.57
2249 2315 4.813161 AGCAAGATCATGTCCTTCATTACG 59.187 41.667 0.00 0.00 34.09 3.18
2258 2330 3.244078 TGTCCTTCATTACGAGCTTGTGT 60.244 43.478 17.36 4.66 0.00 3.72
2261 2333 4.213270 TCCTTCATTACGAGCTTGTGTTTG 59.787 41.667 17.36 10.94 0.00 2.93
2292 2364 1.818060 CGATTGTGCATTTCCCCAAGA 59.182 47.619 0.00 0.00 0.00 3.02
2294 2366 3.119029 CGATTGTGCATTTCCCCAAGAAT 60.119 43.478 0.00 0.00 33.44 2.40
2297 2371 2.971330 TGTGCATTTCCCCAAGAATGTT 59.029 40.909 0.00 0.00 33.44 2.71
2301 2375 4.462483 TGCATTTCCCCAAGAATGTTCTAC 59.538 41.667 0.00 0.00 36.28 2.59
2320 2394 6.877611 TCTACAAAGTTCCTCCACAAAATC 57.122 37.500 0.00 0.00 0.00 2.17
2325 2399 5.774498 AAGTTCCTCCACAAAATCAGAAC 57.226 39.130 0.00 0.00 33.91 3.01
2328 2402 2.154462 CCTCCACAAAATCAGAACGCT 58.846 47.619 0.00 0.00 0.00 5.07
2339 2427 0.877071 CAGAACGCTGTTCAATGCCT 59.123 50.000 18.86 0.44 37.37 4.75
2350 2438 5.341872 TGTTCAATGCCTTATCAATTGGG 57.658 39.130 5.42 0.00 0.00 4.12
2351 2439 5.022122 TGTTCAATGCCTTATCAATTGGGA 58.978 37.500 5.42 0.00 0.00 4.37
2356 2444 3.620488 TGCCTTATCAATTGGGAGACAC 58.380 45.455 5.42 0.00 0.00 3.67
2357 2445 3.266772 TGCCTTATCAATTGGGAGACACT 59.733 43.478 5.42 0.00 0.00 3.55
2379 2467 6.261826 CACTTCCTGAGATCACATTTAATCCC 59.738 42.308 0.00 0.00 0.00 3.85
2383 2471 6.603201 TCCTGAGATCACATTTAATCCCAAAC 59.397 38.462 0.00 0.00 0.00 2.93
2384 2472 6.377996 CCTGAGATCACATTTAATCCCAAACA 59.622 38.462 0.00 0.00 0.00 2.83
2415 2536 4.677584 AGACACTCGTGATGATTAGAAGC 58.322 43.478 3.74 0.00 0.00 3.86
2421 2542 6.685828 CACTCGTGATGATTAGAAGCATTTTG 59.314 38.462 0.00 0.00 34.76 2.44
2424 2546 7.909267 TCGTGATGATTAGAAGCATTTTGTAG 58.091 34.615 0.00 0.00 34.76 2.74
2429 2551 9.713740 GATGATTAGAAGCATTTTGTAGACTTG 57.286 33.333 0.00 0.00 34.76 3.16
2438 2560 7.752695 AGCATTTTGTAGACTTGTATTAGTGC 58.247 34.615 0.00 0.00 0.00 4.40
2462 2585 2.356665 TTGCACTTGCTTGGTCCTTA 57.643 45.000 2.33 0.00 42.66 2.69
2476 2599 3.314693 GGTCCTTACCATCCTCCATGTA 58.685 50.000 0.00 0.00 45.98 2.29
2515 2638 9.640952 TGGTAGGAAATTATAAATCTTGAAGGG 57.359 33.333 0.00 0.00 0.00 3.95
2519 2642 8.061304 AGGAAATTATAAATCTTGAAGGGCAGA 58.939 33.333 0.00 0.00 0.00 4.26
2523 2646 5.975988 ATAAATCTTGAAGGGCAGAGGTA 57.024 39.130 0.00 0.00 0.00 3.08
2530 2653 6.357367 TCTTGAAGGGCAGAGGTATTATTTC 58.643 40.000 0.00 0.00 0.00 2.17
2537 2660 6.043938 AGGGCAGAGGTATTATTTCGGAAATA 59.956 38.462 17.03 17.03 32.38 1.40
2543 2671 9.557061 AGAGGTATTATTTCGGAAATAGGAAAC 57.443 33.333 19.31 15.60 35.21 2.78
2553 2681 3.487544 GGAAATAGGAAACGTCATGCTGC 60.488 47.826 5.72 0.00 0.00 5.25
2562 2690 3.083349 TCATGCTGCGGGCTAGGT 61.083 61.111 0.00 0.00 42.39 3.08
2576 2704 1.200948 GCTAGGTGCAAAAGCCTTGAG 59.799 52.381 6.70 0.00 42.31 3.02
2579 2707 1.466851 GGTGCAAAAGCCTTGAGCCT 61.467 55.000 0.00 0.00 45.47 4.58
2580 2708 0.319297 GTGCAAAAGCCTTGAGCCTG 60.319 55.000 0.00 0.00 45.47 4.85
2610 2738 5.651530 TGAAATCACTGGAACGAGAGATAC 58.348 41.667 0.00 0.00 0.00 2.24
2618 2746 6.038825 CACTGGAACGAGAGATACACTAGAAT 59.961 42.308 0.00 0.00 0.00 2.40
2621 2749 8.693120 TGGAACGAGAGATACACTAGAATAAT 57.307 34.615 0.00 0.00 0.00 1.28
2622 2750 9.132923 TGGAACGAGAGATACACTAGAATAATT 57.867 33.333 0.00 0.00 0.00 1.40
2623 2751 9.400638 GGAACGAGAGATACACTAGAATAATTG 57.599 37.037 0.00 0.00 0.00 2.32
2624 2752 8.804688 AACGAGAGATACACTAGAATAATTGC 57.195 34.615 0.00 0.00 0.00 3.56
2625 2753 7.371936 ACGAGAGATACACTAGAATAATTGCC 58.628 38.462 0.00 0.00 0.00 4.52
2626 2754 6.809196 CGAGAGATACACTAGAATAATTGCCC 59.191 42.308 0.00 0.00 0.00 5.36
2627 2755 6.692486 AGAGATACACTAGAATAATTGCCCG 58.308 40.000 0.00 0.00 0.00 6.13
2628 2756 6.267928 AGAGATACACTAGAATAATTGCCCGT 59.732 38.462 0.00 0.00 0.00 5.28
2635 2763 2.025321 AGAATAATTGCCCGTTCACCCT 60.025 45.455 0.00 0.00 0.00 4.34
2638 2766 0.402504 AATTGCCCGTTCACCCTACA 59.597 50.000 0.00 0.00 0.00 2.74
2644 2772 2.288666 CCCGTTCACCCTACATGAATG 58.711 52.381 0.00 0.00 41.04 2.67
2650 2778 5.616866 CGTTCACCCTACATGAATGTTCAAC 60.617 44.000 0.00 0.00 41.13 3.18
2671 2834 6.599244 TCAACCTAGGATTGCTTAAGTTGATG 59.401 38.462 17.98 0.00 34.22 3.07
2681 2844 5.312895 TGCTTAAGTTGATGCCTTAGAACA 58.687 37.500 4.02 0.00 0.00 3.18
2682 2845 5.945784 TGCTTAAGTTGATGCCTTAGAACAT 59.054 36.000 4.02 0.00 0.00 2.71
2684 2847 6.678900 GCTTAAGTTGATGCCTTAGAACATGG 60.679 42.308 4.02 0.00 0.00 3.66
2704 2873 2.230660 GCAGGTTTCTATATGGTGCCC 58.769 52.381 0.00 0.00 0.00 5.36
2732 2902 1.207089 TCGATTGGATCCTGTGTGTCC 59.793 52.381 14.23 0.00 0.00 4.02
2736 2906 1.221840 GGATCCTGTGTGTCCGCAT 59.778 57.895 3.84 0.00 0.00 4.73
2747 2917 2.000447 GTGTCCGCATAACTCAGAACC 59.000 52.381 0.00 0.00 0.00 3.62
2749 2919 2.000447 GTCCGCATAACTCAGAACCAC 59.000 52.381 0.00 0.00 0.00 4.16
2751 2921 1.338674 CCGCATAACTCAGAACCACCA 60.339 52.381 0.00 0.00 0.00 4.17
2760 2930 2.285083 TCAGAACCACCACGACAAAAG 58.715 47.619 0.00 0.00 0.00 2.27
2765 2935 4.218852 AGAACCACCACGACAAAAGAAAAA 59.781 37.500 0.00 0.00 0.00 1.94
2787 2957 7.839680 AAAAGAACACCCAACTGATTCTAAT 57.160 32.000 0.00 0.00 0.00 1.73
2789 2959 8.934023 AAAGAACACCCAACTGATTCTAATTA 57.066 30.769 0.00 0.00 0.00 1.40
2797 2967 8.576442 ACCCAACTGATTCTAATTACAACAAAG 58.424 33.333 0.00 0.00 0.00 2.77
2798 2968 8.028938 CCCAACTGATTCTAATTACAACAAAGG 58.971 37.037 0.00 0.00 0.00 3.11
2801 2971 8.934023 ACTGATTCTAATTACAACAAAGGGAA 57.066 30.769 0.00 0.00 0.00 3.97
2802 2972 9.014297 ACTGATTCTAATTACAACAAAGGGAAG 57.986 33.333 0.00 0.00 0.00 3.46
2818 2991 7.040409 ACAAAGGGAAGAAATTATGACACACTC 60.040 37.037 0.00 0.00 0.00 3.51
2819 2992 6.380079 AGGGAAGAAATTATGACACACTCT 57.620 37.500 0.00 0.00 0.00 3.24
2823 2996 8.041323 GGGAAGAAATTATGACACACTCTCTTA 58.959 37.037 0.00 0.00 0.00 2.10
2836 3009 6.203723 ACACACTCTCTTAAGATGAAAACAGC 59.796 38.462 5.44 0.00 0.00 4.40
2852 3025 3.254629 AGCGTGGATGCTGAAATGT 57.745 47.368 0.00 0.00 45.28 2.71
2858 3031 5.356751 AGCGTGGATGCTGAAATGTAAATAA 59.643 36.000 0.00 0.00 45.28 1.40
2859 3032 5.682862 GCGTGGATGCTGAAATGTAAATAAG 59.317 40.000 0.00 0.00 0.00 1.73
2860 3033 5.682862 CGTGGATGCTGAAATGTAAATAAGC 59.317 40.000 0.00 0.00 0.00 3.09
2862 3035 4.676924 GGATGCTGAAATGTAAATAAGCGC 59.323 41.667 0.00 0.00 33.35 5.92
2867 3040 4.904116 TGAAATGTAAATAAGCGCGAAGG 58.096 39.130 12.10 0.00 0.00 3.46
2869 3042 4.795970 AATGTAAATAAGCGCGAAGGAG 57.204 40.909 12.10 0.00 0.00 3.69
2884 3059 6.147581 CGCGAAGGAGCTAAATGTACTAATA 58.852 40.000 0.00 0.00 34.40 0.98
2887 3062 9.074443 GCGAAGGAGCTAAATGTACTAATATAC 57.926 37.037 0.00 0.00 0.00 1.47
2910 3085 6.773638 ACTGTGAACTCTGTCCAGATAAATT 58.226 36.000 0.00 0.00 36.76 1.82
2918 3093 8.438676 ACTCTGTCCAGATAAATTTATTTCCG 57.561 34.615 11.92 0.20 36.76 4.30
2929 3104 9.262358 GATAAATTTATTTCCGTCTGTAGCTCT 57.738 33.333 11.92 0.00 0.00 4.09
2949 3124 7.753630 AGCTCTGATTCATGGTAGGATTAAAT 58.246 34.615 0.00 0.00 0.00 1.40
2962 3137 7.827236 TGGTAGGATTAAATTTGTGGACTACTG 59.173 37.037 0.00 0.00 0.00 2.74
2974 3149 1.410882 GGACTACTGGGATCTCAGTGC 59.589 57.143 34.00 22.80 46.29 4.40
2989 3164 1.203052 CAGTGCACCATTCAACATCCC 59.797 52.381 14.63 0.00 0.00 3.85
3014 3189 3.511540 GGTCTTTTCTTGCCTTGCCTAAT 59.488 43.478 0.00 0.00 0.00 1.73
3019 3194 1.545582 TCTTGCCTTGCCTAATGTTGC 59.454 47.619 0.00 0.00 0.00 4.17
3022 3197 2.091541 TGCCTTGCCTAATGTTGCTAC 58.908 47.619 0.00 0.00 0.00 3.58
3030 3205 5.016173 TGCCTAATGTTGCTACCTCAAAAT 58.984 37.500 0.00 0.00 0.00 1.82
3041 3216 9.685828 GTTGCTACCTCAAAATTGTACATTTAA 57.314 29.630 0.00 0.00 0.00 1.52
3064 3242 2.299867 GTGTGGTTTGGATGGCTGATTT 59.700 45.455 0.00 0.00 0.00 2.17
3068 3246 3.768757 TGGTTTGGATGGCTGATTTTAGG 59.231 43.478 0.00 0.00 0.00 2.69
3069 3247 4.023291 GGTTTGGATGGCTGATTTTAGGA 58.977 43.478 0.00 0.00 0.00 2.94
3072 3250 6.352137 GGTTTGGATGGCTGATTTTAGGATTT 60.352 38.462 0.00 0.00 0.00 2.17
3078 3256 3.451526 GCTGATTTTAGGATTTGCTGCC 58.548 45.455 0.00 0.00 0.00 4.85
3082 3260 5.481105 TGATTTTAGGATTTGCTGCCAAAG 58.519 37.500 0.00 0.00 43.60 2.77
3083 3261 3.959535 TTTAGGATTTGCTGCCAAAGG 57.040 42.857 0.00 0.00 43.60 3.11
3088 3266 2.501316 GGATTTGCTGCCAAAGGGTAAT 59.499 45.455 0.00 0.00 43.60 1.89
3095 3273 3.635591 CTGCCAAAGGGTAATGAGGATT 58.364 45.455 0.00 0.00 36.17 3.01
3101 3279 6.831868 GCCAAAGGGTAATGAGGATTAGTTTA 59.168 38.462 0.00 0.00 36.17 2.01
3108 3286 7.284716 GGGTAATGAGGATTAGTTTAAACAGGG 59.715 40.741 20.06 0.00 0.00 4.45
3109 3287 6.775594 AATGAGGATTAGTTTAAACAGGGC 57.224 37.500 20.06 6.88 0.00 5.19
3114 3292 2.103537 TAGTTTAAACAGGGCGAGGC 57.896 50.000 20.06 0.00 0.00 4.70
3157 3335 2.902608 TCCTGTATGTGGGAAGTCTGT 58.097 47.619 0.00 0.00 0.00 3.41
3170 3348 3.999663 GGAAGTCTGTGTTTGGAGAGATG 59.000 47.826 0.00 0.00 0.00 2.90
3171 3349 3.051081 AGTCTGTGTTTGGAGAGATGC 57.949 47.619 0.00 0.00 0.00 3.91
3173 3351 3.834813 AGTCTGTGTTTGGAGAGATGCTA 59.165 43.478 0.00 0.00 0.00 3.49
3177 3355 5.877012 TCTGTGTTTGGAGAGATGCTATTTC 59.123 40.000 0.00 0.00 0.00 2.17
3183 3361 3.197766 TGGAGAGATGCTATTTCGTTGGT 59.802 43.478 0.00 0.00 0.00 3.67
3184 3362 4.192317 GGAGAGATGCTATTTCGTTGGTT 58.808 43.478 0.00 0.00 0.00 3.67
3188 3366 6.349300 AGAGATGCTATTTCGTTGGTTGTAT 58.651 36.000 0.00 0.00 0.00 2.29
3322 3502 6.827586 TCCACTTTGTTATACAAATGGACC 57.172 37.500 20.22 0.00 45.79 4.46
3323 3503 6.548321 TCCACTTTGTTATACAAATGGACCT 58.452 36.000 20.22 0.00 45.79 3.85
3324 3504 7.691213 TCCACTTTGTTATACAAATGGACCTA 58.309 34.615 20.22 8.79 45.79 3.08
3325 3505 8.164733 TCCACTTTGTTATACAAATGGACCTAA 58.835 33.333 20.22 8.57 45.79 2.69
3341 3521 9.821240 AATGGACCTAATTATATGCAATAACCA 57.179 29.630 0.00 0.00 29.06 3.67
3342 3522 8.630054 TGGACCTAATTATATGCAATAACCAC 57.370 34.615 0.00 0.00 29.06 4.16
3343 3523 8.444783 TGGACCTAATTATATGCAATAACCACT 58.555 33.333 0.00 0.00 29.06 4.00
3344 3524 8.947115 GGACCTAATTATATGCAATAACCACTC 58.053 37.037 0.00 0.00 29.06 3.51
3345 3525 8.863872 ACCTAATTATATGCAATAACCACTCC 57.136 34.615 0.00 0.00 29.06 3.85
3346 3526 8.444783 ACCTAATTATATGCAATAACCACTCCA 58.555 33.333 0.00 0.00 29.06 3.86
3347 3527 9.466497 CCTAATTATATGCAATAACCACTCCAT 57.534 33.333 0.00 0.00 29.06 3.41
3350 3530 7.921786 TTATATGCAATAACCACTCCATAGC 57.078 36.000 0.00 0.00 29.06 2.97
3351 3531 3.643199 TGCAATAACCACTCCATAGCA 57.357 42.857 0.00 0.00 0.00 3.49
3352 3532 3.961849 TGCAATAACCACTCCATAGCAA 58.038 40.909 0.00 0.00 0.00 3.91
3353 3533 3.694072 TGCAATAACCACTCCATAGCAAC 59.306 43.478 0.00 0.00 0.00 4.17
3354 3534 3.066760 GCAATAACCACTCCATAGCAACC 59.933 47.826 0.00 0.00 0.00 3.77
3355 3535 4.526970 CAATAACCACTCCATAGCAACCT 58.473 43.478 0.00 0.00 0.00 3.50
3356 3536 2.496899 AACCACTCCATAGCAACCTG 57.503 50.000 0.00 0.00 0.00 4.00
3357 3537 0.035056 ACCACTCCATAGCAACCTGC 60.035 55.000 0.00 0.00 45.46 4.85
3370 3550 4.025015 GCAACCTGCATGAGTAGAAATG 57.975 45.455 0.00 0.00 44.26 2.32
3371 3551 3.181493 GCAACCTGCATGAGTAGAAATGG 60.181 47.826 0.00 0.00 44.26 3.16
3372 3552 4.264253 CAACCTGCATGAGTAGAAATGGA 58.736 43.478 0.00 0.00 0.00 3.41
3373 3553 4.148128 ACCTGCATGAGTAGAAATGGAG 57.852 45.455 0.00 0.00 40.72 3.86
3374 3554 3.776969 ACCTGCATGAGTAGAAATGGAGA 59.223 43.478 0.00 0.00 42.88 3.71
3375 3555 4.225942 ACCTGCATGAGTAGAAATGGAGAA 59.774 41.667 0.00 0.00 42.88 2.87
3376 3556 5.188434 CCTGCATGAGTAGAAATGGAGAAA 58.812 41.667 0.00 0.00 42.88 2.52
3377 3557 5.826737 CCTGCATGAGTAGAAATGGAGAAAT 59.173 40.000 0.00 0.00 42.88 2.17
3378 3558 6.017275 CCTGCATGAGTAGAAATGGAGAAATC 60.017 42.308 0.00 0.00 42.88 2.17
3379 3559 6.656902 TGCATGAGTAGAAATGGAGAAATCT 58.343 36.000 0.00 0.00 0.00 2.40
3380 3560 6.765036 TGCATGAGTAGAAATGGAGAAATCTC 59.235 38.462 0.00 1.68 42.14 2.75
3381 3561 6.765036 GCATGAGTAGAAATGGAGAAATCTCA 59.235 38.462 12.21 0.00 44.60 3.27
3382 3562 7.444792 GCATGAGTAGAAATGGAGAAATCTCAT 59.555 37.037 12.21 0.00 44.60 2.90
3383 3563 8.775527 CATGAGTAGAAATGGAGAAATCTCATG 58.224 37.037 12.21 13.98 44.96 3.07
3384 3564 7.855375 TGAGTAGAAATGGAGAAATCTCATGT 58.145 34.615 12.21 0.19 44.60 3.21
3385 3565 8.324306 TGAGTAGAAATGGAGAAATCTCATGTT 58.676 33.333 12.21 2.78 44.60 2.71
3386 3566 8.729805 AGTAGAAATGGAGAAATCTCATGTTC 57.270 34.615 12.21 10.58 44.60 3.18
3387 3567 6.674694 AGAAATGGAGAAATCTCATGTTCG 57.325 37.500 12.21 0.00 44.60 3.95
3388 3568 6.176183 AGAAATGGAGAAATCTCATGTTCGT 58.824 36.000 12.21 0.00 44.60 3.85
3389 3569 6.314896 AGAAATGGAGAAATCTCATGTTCGTC 59.685 38.462 12.21 1.12 44.60 4.20
3390 3570 4.535526 TGGAGAAATCTCATGTTCGTCA 57.464 40.909 12.21 0.00 44.60 4.35
3391 3571 4.893608 TGGAGAAATCTCATGTTCGTCAA 58.106 39.130 12.21 0.00 44.60 3.18
3392 3572 5.491070 TGGAGAAATCTCATGTTCGTCAAT 58.509 37.500 12.21 0.00 44.60 2.57
3393 3573 5.582269 TGGAGAAATCTCATGTTCGTCAATC 59.418 40.000 12.21 0.00 44.60 2.67
3394 3574 5.007136 GGAGAAATCTCATGTTCGTCAATCC 59.993 44.000 12.21 0.00 44.60 3.01
3395 3575 5.738909 AGAAATCTCATGTTCGTCAATCCT 58.261 37.500 0.00 0.00 0.00 3.24
3396 3576 5.814705 AGAAATCTCATGTTCGTCAATCCTC 59.185 40.000 0.00 0.00 0.00 3.71
3403 3583 2.766263 TGTTCGTCAATCCTCAGCCTAT 59.234 45.455 0.00 0.00 0.00 2.57
3405 3585 1.964223 TCGTCAATCCTCAGCCTATCC 59.036 52.381 0.00 0.00 0.00 2.59
3407 3587 2.050144 GTCAATCCTCAGCCTATCCCA 58.950 52.381 0.00 0.00 0.00 4.37
3414 3594 2.911636 CCTCAGCCTATCCCAGATCAAT 59.088 50.000 0.00 0.00 0.00 2.57
3416 3596 4.325119 CTCAGCCTATCCCAGATCAATTG 58.675 47.826 0.00 0.00 0.00 2.32
3427 3607 3.863424 CCAGATCAATTGTTTGCATGAGC 59.137 43.478 5.13 0.00 42.57 4.26
3429 3609 4.562789 CAGATCAATTGTTTGCATGAGCTG 59.437 41.667 14.46 14.46 45.98 4.24
3443 3623 1.322442 GAGCTGAGCCTGGTTTGTTT 58.678 50.000 0.00 0.00 0.00 2.83
3446 3626 3.500343 AGCTGAGCCTGGTTTGTTTATT 58.500 40.909 0.00 0.00 0.00 1.40
3462 3642 5.632118 TGTTTATTGCTACACCCAACCTAA 58.368 37.500 0.00 0.00 0.00 2.69
3467 3647 4.107127 TGCTACACCCAACCTAACAATT 57.893 40.909 0.00 0.00 0.00 2.32
3473 3653 7.383029 GCTACACCCAACCTAACAATTAAAAAC 59.617 37.037 0.00 0.00 0.00 2.43
3478 3658 8.322828 ACCCAACCTAACAATTAAAAACAAAGT 58.677 29.630 0.00 0.00 0.00 2.66
3499 3679 6.107901 AGTGAAAGATTCTGCACTAACTCT 57.892 37.500 16.51 0.00 39.61 3.24
3509 3689 1.936547 GCACTAACTCTGTATGGCAGC 59.063 52.381 0.00 0.00 44.66 5.25
3524 3704 2.819595 AGCCCAAGCGCATACACG 60.820 61.111 11.47 0.00 46.67 4.49
3525 3705 3.124921 GCCCAAGCGCATACACGT 61.125 61.111 11.47 0.00 34.88 4.49
3532 3712 1.131826 GCGCATACACGTCAACCAC 59.868 57.895 0.30 0.00 34.88 4.16
3540 3720 1.145377 ACGTCAACCACTCACACCC 59.855 57.895 0.00 0.00 0.00 4.61
3543 3723 1.308998 GTCAACCACTCACACCCTTG 58.691 55.000 0.00 0.00 0.00 3.61
3557 3737 0.887933 CCCTTGGTGCGCAAAGTATT 59.112 50.000 14.00 0.00 0.00 1.89
3558 3738 1.402720 CCCTTGGTGCGCAAAGTATTG 60.403 52.381 14.00 0.04 39.65 1.90
3571 3751 9.123709 TGCGCAAAGTATTGTAAAAGATTTTAG 57.876 29.630 8.16 0.00 38.85 1.85
3572 3752 9.124807 GCGCAAAGTATTGTAAAAGATTTTAGT 57.875 29.630 0.30 0.00 38.85 2.24
3603 3789 5.990668 ACTCACTCTTAGTTCCAAACAAGT 58.009 37.500 0.00 0.00 0.00 3.16
3616 3802 6.553953 TCCAAACAAGTAGACAGCCATATA 57.446 37.500 0.00 0.00 0.00 0.86
3640 3826 2.223479 GGTTGTTGAACTGCATCGTTGT 60.223 45.455 0.00 0.00 32.15 3.32
3657 3843 6.389830 TCGTTGTAGACCTGTTAGTGTAAA 57.610 37.500 0.00 0.00 0.00 2.01
3671 3857 7.268586 TGTTAGTGTAAAATTTGCACATTGGT 58.731 30.769 24.45 9.54 46.85 3.67
3680 3866 8.931385 AAAATTTGCACATTGGTACAGATATC 57.069 30.769 0.00 0.00 42.39 1.63
3687 3873 8.210265 TGCACATTGGTACAGATATCTGAATTA 58.790 33.333 34.16 16.65 46.59 1.40
3692 3878 7.754851 TGGTACAGATATCTGAATTAGCGTA 57.245 36.000 34.16 14.02 46.59 4.42
3705 3891 8.035394 TCTGAATTAGCGTAATCTTTCTTCAGT 58.965 33.333 0.00 0.00 31.95 3.41
3746 3932 4.329638 TGAATTATCCTTTGAAGGCCCA 57.670 40.909 0.00 0.00 46.06 5.36
3754 3940 2.106338 CCTTTGAAGGCCCAATTTGGTT 59.894 45.455 14.26 2.24 39.76 3.67
3771 3957 8.597227 CAATTTGGTTGTGATAACTATTGCATG 58.403 33.333 0.00 0.00 33.01 4.06
3779 3965 8.109705 TGTGATAACTATTGCATGTTTGAACT 57.890 30.769 5.75 0.00 0.00 3.01
3802 3988 6.479660 ACTGAAAGGTGCAAACAAATTACATG 59.520 34.615 0.00 0.00 39.30 3.21
3855 4041 8.648557 TTCTACTGCATCTGTGATAATAACAC 57.351 34.615 0.00 0.00 38.55 3.32
3863 4049 9.265901 GCATCTGTGATAATAACACTACTGAAT 57.734 33.333 2.49 0.00 38.81 2.57
3868 4054 9.546428 TGTGATAATAACACTACTGAATGATGG 57.454 33.333 2.49 0.00 38.81 3.51
3924 4110 5.528690 TGCTGACAATATCTTAGTTGCATCC 59.471 40.000 0.00 0.00 0.00 3.51
3925 4111 5.762218 GCTGACAATATCTTAGTTGCATCCT 59.238 40.000 0.00 0.00 0.00 3.24
3926 4112 6.293298 GCTGACAATATCTTAGTTGCATCCTG 60.293 42.308 0.00 0.00 0.00 3.86
3952 4138 4.225942 TGACAGAATGAGTTAGCCATCCTT 59.774 41.667 0.00 0.00 39.69 3.36
3970 4156 7.308469 GCCATCCTTGAATTCATACATCTTCTC 60.308 40.741 9.40 0.00 0.00 2.87
3988 4174 1.302192 CGTGGAAACCATGGACCGT 60.302 57.895 21.47 0.00 36.92 4.83
4014 4200 0.517316 GGCAACGTGGTAAGCTCAAG 59.483 55.000 0.00 0.00 0.00 3.02
4136 4322 3.416156 GGAGAAAGTCCACTTCATGCTT 58.584 45.455 0.00 0.00 46.10 3.91
4279 4465 2.904131 CCTCTTCCTCCCGCCTTC 59.096 66.667 0.00 0.00 0.00 3.46
4280 4466 1.990060 CCTCTTCCTCCCGCCTTCA 60.990 63.158 0.00 0.00 0.00 3.02
4295 4481 1.072331 CCTTCACCATAGATTCCCCCG 59.928 57.143 0.00 0.00 0.00 5.73
4315 4501 1.197721 GTTGTGTGAGGAGAAATGCCG 59.802 52.381 0.00 0.00 0.00 5.69
4372 4558 4.261994 CCCGACTGGAAAATGTGAAATGTT 60.262 41.667 0.00 0.00 37.49 2.71
4404 4590 6.723515 TGTTGAAAATGAAGACCCCATCATTA 59.276 34.615 1.82 0.00 43.54 1.90
4405 4591 6.773976 TGAAAATGAAGACCCCATCATTAC 57.226 37.500 1.82 1.62 43.54 1.89
4406 4592 6.493166 TGAAAATGAAGACCCCATCATTACT 58.507 36.000 1.82 0.00 43.54 2.24
4471 4677 0.675633 ACAGACTTGGTGCAATTGCC 59.324 50.000 26.94 17.54 41.18 4.52
4478 4684 2.101965 GTGCAATTGCCGCGCATA 59.898 55.556 26.94 4.00 38.76 3.14
4494 4700 3.125146 GCGCATAAAACATGAGTCACTGA 59.875 43.478 0.30 0.00 0.00 3.41
4500 4706 7.972277 GCATAAAACATGAGTCACTGAATGAAT 59.028 33.333 0.00 0.00 39.72 2.57
4542 4748 2.626785 TCCAACCAGAACCACCAGATA 58.373 47.619 0.00 0.00 0.00 1.98
4544 4750 3.054434 TCCAACCAGAACCACCAGATATG 60.054 47.826 0.00 0.00 0.00 1.78
4545 4751 3.308402 CCAACCAGAACCACCAGATATGT 60.308 47.826 0.00 0.00 0.00 2.29
4546 4752 4.335416 CAACCAGAACCACCAGATATGTT 58.665 43.478 0.00 0.00 0.00 2.71
4547 4753 4.222124 ACCAGAACCACCAGATATGTTC 57.778 45.455 0.00 0.00 37.86 3.18
4548 4754 3.846588 ACCAGAACCACCAGATATGTTCT 59.153 43.478 0.00 0.00 46.10 3.01
4564 4821 8.089266 AGATATGTTCTGTTTGGGATACCCCTA 61.089 40.741 0.00 0.00 46.03 3.53
4607 4877 1.002888 CAGAATATGCGCCTGATCCCT 59.997 52.381 4.18 0.00 0.00 4.20
4613 4883 3.790437 CGCCTGATCCCTGCCACT 61.790 66.667 0.00 0.00 0.00 4.00
4619 4889 4.457496 ATCCCTGCCACTGTCGCG 62.457 66.667 0.00 0.00 0.00 5.87
4629 4899 2.430921 CTGTCGCGACCTGGTCAC 60.431 66.667 34.34 15.74 32.09 3.67
4630 4900 3.207547 CTGTCGCGACCTGGTCACA 62.208 63.158 34.34 19.85 32.09 3.58
4660 4949 1.880340 GACAGCGAATCGAGCCTGG 60.880 63.158 6.91 0.00 34.64 4.45
4661 4950 2.185350 CAGCGAATCGAGCCTGGT 59.815 61.111 6.91 0.00 34.64 4.00
4685 4974 4.954118 ACCACCAGGGGCTGTCGA 62.954 66.667 0.00 0.00 42.91 4.20
4686 4975 4.394712 CCACCAGGGGCTGTCGAC 62.395 72.222 9.11 9.11 0.00 4.20
4777 5091 2.043852 TCCTGAGCGGAGGAGGAC 60.044 66.667 2.79 0.00 37.20 3.85
4830 5145 8.334632 CACCCAAACTGTATTTTCAAACAATTC 58.665 33.333 0.00 0.00 0.00 2.17
4831 5146 8.043710 ACCCAAACTGTATTTTCAAACAATTCA 58.956 29.630 0.00 0.00 0.00 2.57
4908 5223 6.998074 ACTACTCCAGTTTTCATTCATGTTCA 59.002 34.615 0.00 0.00 31.59 3.18
4911 5226 6.016777 ACTCCAGTTTTCATTCATGTTCAGAC 60.017 38.462 0.00 0.00 0.00 3.51
5012 5453 6.592798 TTTACTATTTTTCCGACCATAGCG 57.407 37.500 0.00 0.00 0.00 4.26
5016 5457 0.609151 TTTTCCGACCATAGCGTCCA 59.391 50.000 0.00 0.00 0.00 4.02
5021 5462 1.202533 CCGACCATAGCGTCCAAATCT 60.203 52.381 0.00 0.00 0.00 2.40
5050 5492 4.280436 ACGACCTCATTTGTATGGTTCA 57.720 40.909 0.00 0.00 32.30 3.18
5055 5497 3.303329 CCTCATTTGTATGGTTCATCGCG 60.303 47.826 0.00 0.00 32.40 5.87
5111 5553 0.905357 TTCCAGGAACTAGGCAGAGC 59.095 55.000 0.00 0.00 36.02 4.09
5163 5605 4.845796 TGGAATGCCATCAGGATATCAGTA 59.154 41.667 4.83 0.00 39.92 2.74
5165 5607 5.426504 GAATGCCATCAGGATATCAGTAGG 58.573 45.833 4.83 0.94 36.89 3.18
5166 5608 3.176411 TGCCATCAGGATATCAGTAGGG 58.824 50.000 4.83 1.22 36.89 3.53
5211 5653 7.827729 AGGTACTTTTATACAGGCCAAAAGTAG 59.172 37.037 26.43 8.86 46.94 2.57
5266 5709 5.163499 CCACAGTTCAGAATCCTACTAGTCC 60.163 48.000 0.00 0.00 0.00 3.85
5283 5726 2.993853 CCCCCAGCAGAGAACTCC 59.006 66.667 0.00 0.00 0.00 3.85
5287 5730 0.979665 CCCAGCAGAGAACTCCAGAA 59.020 55.000 0.00 0.00 0.00 3.02
5288 5731 1.349026 CCCAGCAGAGAACTCCAGAAA 59.651 52.381 0.00 0.00 0.00 2.52
5290 5733 2.038295 CCAGCAGAGAACTCCAGAAAGT 59.962 50.000 0.00 0.00 0.00 2.66
5291 5734 3.065655 CAGCAGAGAACTCCAGAAAGTG 58.934 50.000 0.00 0.00 0.00 3.16
5292 5735 1.803555 GCAGAGAACTCCAGAAAGTGC 59.196 52.381 0.00 0.00 0.00 4.40
5293 5736 2.808202 GCAGAGAACTCCAGAAAGTGCA 60.808 50.000 0.00 0.00 0.00 4.57
5295 5738 3.249559 CAGAGAACTCCAGAAAGTGCAAC 59.750 47.826 0.00 0.00 0.00 4.17
5297 5740 3.620488 AGAACTCCAGAAAGTGCAACAA 58.380 40.909 0.00 0.00 41.43 2.83
5330 5774 1.693640 CTTCCAGGCCTTGATGGGT 59.306 57.895 0.00 0.00 37.19 4.51
5337 5781 1.026718 GGCCTTGATGGGTTCAGTCG 61.027 60.000 0.00 0.00 35.27 4.18
5346 5790 0.109226 GGGTTCAGTCGACCTTCTCG 60.109 60.000 13.01 0.00 44.44 4.04
5363 5807 2.875933 TCTCGGTTCACCACAAAATGAC 59.124 45.455 0.00 0.00 35.14 3.06
5366 5810 2.601266 CGGTTCACCACAAAATGACGAC 60.601 50.000 0.00 0.00 35.14 4.34
5397 5841 4.904253 AACTACGACATCCTAGAGAAGC 57.096 45.455 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 116 1.374947 CCTACCACACACCCACCTG 59.625 63.158 0.00 0.00 0.00 4.00
151 157 4.308458 CCACCACAACGGCCTCGA 62.308 66.667 0.00 0.00 39.03 4.04
533 542 3.499737 CAACAGCCGTCGCCATCC 61.500 66.667 0.00 0.00 34.57 3.51
620 629 4.693566 TCATCTTTGACCACGGTACAATTC 59.306 41.667 0.00 0.00 0.00 2.17
636 645 3.189287 GTCGCAAACAGGTCATCATCTTT 59.811 43.478 0.00 0.00 0.00 2.52
852 861 9.429359 TGCAAAGATTGTTGTCTCTTTTAAAAA 57.571 25.926 1.66 0.00 39.15 1.94
853 862 8.994429 TGCAAAGATTGTTGTCTCTTTTAAAA 57.006 26.923 0.00 0.00 39.15 1.52
854 863 8.465999 TCTGCAAAGATTGTTGTCTCTTTTAAA 58.534 29.630 0.00 0.00 39.15 1.52
855 864 7.995289 TCTGCAAAGATTGTTGTCTCTTTTAA 58.005 30.769 0.00 0.00 39.15 1.52
856 865 7.566760 TCTGCAAAGATTGTTGTCTCTTTTA 57.433 32.000 0.00 0.00 39.15 1.52
857 866 6.455360 TCTGCAAAGATTGTTGTCTCTTTT 57.545 33.333 0.00 0.00 39.15 2.27
858 867 6.645790 ATCTGCAAAGATTGTTGTCTCTTT 57.354 33.333 0.00 0.00 41.24 2.52
859 868 6.645790 AATCTGCAAAGATTGTTGTCTCTT 57.354 33.333 0.66 0.00 37.16 2.85
860 869 6.489361 AGAAATCTGCAAAGATTGTTGTCTCT 59.511 34.615 2.24 0.00 38.40 3.10
861 870 6.675987 AGAAATCTGCAAAGATTGTTGTCTC 58.324 36.000 2.24 0.00 38.40 3.36
862 871 6.645790 AGAAATCTGCAAAGATTGTTGTCT 57.354 33.333 2.24 0.00 38.40 3.41
863 872 7.704789 AAAGAAATCTGCAAAGATTGTTGTC 57.295 32.000 2.24 0.00 38.40 3.18
864 873 8.496707 AAAAAGAAATCTGCAAAGATTGTTGT 57.503 26.923 2.24 0.00 38.40 3.32
897 906 8.562635 AGGGGTTCTGTTTAGGCTATTTATTTA 58.437 33.333 0.00 0.00 0.00 1.40
901 910 5.729718 AGAGGGGTTCTGTTTAGGCTATTTA 59.270 40.000 0.00 0.00 33.93 1.40
903 912 4.112331 AGAGGGGTTCTGTTTAGGCTATT 58.888 43.478 0.00 0.00 33.93 1.73
907 916 2.618302 GGAAGAGGGGTTCTGTTTAGGC 60.618 54.545 0.00 0.00 35.91 3.93
914 923 2.656947 TTTGTGGAAGAGGGGTTCTG 57.343 50.000 0.00 0.00 35.91 3.02
924 933 5.125417 TCTGTTGAGGTTCTTTTTGTGGAAG 59.875 40.000 0.00 0.00 0.00 3.46
942 954 1.339610 CTATCGCCTCCTCCTCTGTTG 59.660 57.143 0.00 0.00 0.00 3.33
963 975 0.735287 GTCTACGGTTCCGCCTGTTC 60.735 60.000 11.32 0.00 34.25 3.18
966 978 2.202570 CGTCTACGGTTCCGCCTG 60.203 66.667 11.32 2.22 35.37 4.85
1241 1264 3.511540 GGGTTCTTGGATCCAGGAAAAAG 59.488 47.826 33.70 19.41 42.26 2.27
1295 1337 3.036819 CTGATCCAGATCCAGAGGAACA 58.963 50.000 5.22 0.00 37.02 3.18
1302 1344 1.629353 CCCATCCTGATCCAGATCCAG 59.371 57.143 5.22 3.40 37.02 3.86
1323 1365 6.695278 GTGAAAATCGAGGTCAACAAATCAAA 59.305 34.615 0.00 0.00 0.00 2.69
1325 1367 5.559991 CGTGAAAATCGAGGTCAACAAATCA 60.560 40.000 0.00 0.00 0.00 2.57
1326 1368 4.846137 CGTGAAAATCGAGGTCAACAAATC 59.154 41.667 0.00 0.00 0.00 2.17
1327 1369 4.783242 CGTGAAAATCGAGGTCAACAAAT 58.217 39.130 0.00 0.00 0.00 2.32
1328 1370 3.547214 GCGTGAAAATCGAGGTCAACAAA 60.547 43.478 0.00 0.00 0.00 2.83
1473 1515 1.959042 ACAATAGAGCTGGCGGAATG 58.041 50.000 0.00 0.00 0.00 2.67
1485 1527 4.219944 GCTATGGACACGGGATACAATAGA 59.780 45.833 0.00 0.00 39.74 1.98
1488 1530 2.972713 AGCTATGGACACGGGATACAAT 59.027 45.455 0.00 0.00 39.74 2.71
1525 1567 4.280436 TCTAATTGGTGTGACCGTGATT 57.720 40.909 0.00 0.00 42.58 2.57
1528 1570 4.755411 AGTATCTAATTGGTGTGACCGTG 58.245 43.478 0.00 0.00 42.58 4.94
1549 1593 8.364142 ACTGCATCTAGTTTAATTAGCTAGGAG 58.636 37.037 18.22 14.13 34.55 3.69
1552 1596 8.076781 TCGACTGCATCTAGTTTAATTAGCTAG 58.923 37.037 14.85 14.85 34.96 3.42
1557 1601 9.249457 CTGAATCGACTGCATCTAGTTTAATTA 57.751 33.333 0.00 0.00 0.00 1.40
1561 1605 5.359860 TCCTGAATCGACTGCATCTAGTTTA 59.640 40.000 0.00 0.00 0.00 2.01
1562 1606 4.160439 TCCTGAATCGACTGCATCTAGTTT 59.840 41.667 0.00 0.00 0.00 2.66
1563 1607 3.701542 TCCTGAATCGACTGCATCTAGTT 59.298 43.478 0.00 0.00 0.00 2.24
1564 1608 3.291584 TCCTGAATCGACTGCATCTAGT 58.708 45.455 0.00 0.00 0.00 2.57
1614 1669 4.821805 TGCATATTAAGCTCCCTTTAGCAC 59.178 41.667 0.00 0.00 45.30 4.40
1622 1677 5.587844 CCTATCATGTGCATATTAAGCTCCC 59.412 44.000 0.00 0.00 0.00 4.30
1626 1681 5.939883 TCACCCTATCATGTGCATATTAAGC 59.060 40.000 0.00 0.00 32.51 3.09
1633 1688 2.224942 CCCATCACCCTATCATGTGCAT 60.225 50.000 0.00 0.00 32.51 3.96
1639 1694 4.246143 AGAATCACCCATCACCCTATCAT 58.754 43.478 0.00 0.00 0.00 2.45
1649 1704 8.738645 AAGAAATAACAGTAGAATCACCCATC 57.261 34.615 0.00 0.00 0.00 3.51
1712 1767 5.992829 CACGGCATGTACCCAAATATACTTA 59.007 40.000 0.00 0.00 0.00 2.24
1715 1770 4.131596 ACACGGCATGTACCCAAATATAC 58.868 43.478 0.00 0.00 40.88 1.47
1717 1772 3.290948 ACACGGCATGTACCCAAATAT 57.709 42.857 0.00 0.00 40.88 1.28
1718 1773 2.791347 ACACGGCATGTACCCAAATA 57.209 45.000 0.00 0.00 40.88 1.40
1719 1774 2.791347 TACACGGCATGTACCCAAAT 57.209 45.000 0.00 0.00 43.19 2.32
1728 1783 3.430895 ACTTTCGTTAAGTACACGGCATG 59.569 43.478 4.61 0.00 45.22 4.06
1742 1797 7.601130 TCACTTGTATTATGCAGTACTTTCGTT 59.399 33.333 0.00 0.00 0.00 3.85
1745 1800 8.936864 AGTTCACTTGTATTATGCAGTACTTTC 58.063 33.333 0.00 0.00 0.00 2.62
1761 1816 0.605589 GCCCGCCTAAGTTCACTTGT 60.606 55.000 2.26 0.00 37.40 3.16
1770 1825 1.002087 CCTATTGGTAGCCCGCCTAAG 59.998 57.143 0.00 0.00 0.00 2.18
1811 1866 5.626142 TGCTGGGAGTTGTCTTGTTAATTA 58.374 37.500 0.00 0.00 0.00 1.40
1812 1867 4.469657 TGCTGGGAGTTGTCTTGTTAATT 58.530 39.130 0.00 0.00 0.00 1.40
1813 1868 4.098914 TGCTGGGAGTTGTCTTGTTAAT 57.901 40.909 0.00 0.00 0.00 1.40
1814 1869 3.569194 TGCTGGGAGTTGTCTTGTTAA 57.431 42.857 0.00 0.00 0.00 2.01
1820 1875 2.887152 GTCAATTTGCTGGGAGTTGTCT 59.113 45.455 0.00 0.00 0.00 3.41
1832 1887 6.619232 GCAATTAGCTTCTTTGGTCAATTTGC 60.619 38.462 0.00 0.00 41.15 3.68
1869 1924 7.670009 TGTTATTGAATTTCCTTGCCATTTG 57.330 32.000 0.00 0.00 0.00 2.32
1884 1939 5.369833 TCGAGGACCAAAGTTGTTATTGAA 58.630 37.500 0.00 0.00 0.00 2.69
1927 1984 0.842030 AGTGATGGGCTCCACCAAGA 60.842 55.000 0.00 0.00 45.13 3.02
1929 1986 1.379916 CAGTGATGGGCTCCACCAA 59.620 57.895 0.00 0.00 45.13 3.67
1971 2037 4.774124 CAGGGAGCAAGTAAATCAGATGA 58.226 43.478 0.00 0.00 0.00 2.92
1995 2061 7.182206 AGGGTGTCCAAAGTATACTTCATAAGT 59.818 37.037 18.28 0.00 39.49 2.24
2002 2068 9.020731 CATAAAAAGGGTGTCCAAAGTATACTT 57.979 33.333 12.50 12.50 37.91 2.24
2005 2071 6.948886 TGCATAAAAAGGGTGTCCAAAGTATA 59.051 34.615 0.00 0.00 34.83 1.47
2009 2075 4.599047 TGCATAAAAAGGGTGTCCAAAG 57.401 40.909 0.00 0.00 34.83 2.77
2044 2110 8.863086 ACATAAAACATATGCTATTGGCTTGAT 58.137 29.630 1.58 0.00 42.39 2.57
2045 2111 8.236585 ACATAAAACATATGCTATTGGCTTGA 57.763 30.769 1.58 0.00 42.39 3.02
2077 2143 6.899393 AAAGGAAATGTCTCAAATGTGCTA 57.101 33.333 0.00 0.00 0.00 3.49
2107 2173 4.091509 GGCGCCTGTATTTCGATACATAAG 59.908 45.833 22.15 0.00 36.54 1.73
2109 2175 3.257375 AGGCGCCTGTATTTCGATACATA 59.743 43.478 32.33 0.00 36.54 2.29
2110 2176 2.037251 AGGCGCCTGTATTTCGATACAT 59.963 45.455 32.33 0.00 36.54 2.29
2114 2180 1.583054 GAAGGCGCCTGTATTTCGAT 58.417 50.000 33.60 11.20 0.00 3.59
2115 2181 0.461339 GGAAGGCGCCTGTATTTCGA 60.461 55.000 33.60 0.00 0.00 3.71
2116 2182 0.742990 TGGAAGGCGCCTGTATTTCG 60.743 55.000 33.60 0.00 0.00 3.46
2117 2183 1.017387 CTGGAAGGCGCCTGTATTTC 58.983 55.000 33.60 23.23 0.00 2.17
2118 2184 0.328258 ACTGGAAGGCGCCTGTATTT 59.672 50.000 33.60 14.94 38.19 1.40
2119 2185 0.328258 AACTGGAAGGCGCCTGTATT 59.672 50.000 33.60 15.42 38.91 1.89
2120 2186 0.328258 AAACTGGAAGGCGCCTGTAT 59.672 50.000 33.60 15.90 38.91 2.29
2121 2187 0.321298 GAAACTGGAAGGCGCCTGTA 60.321 55.000 33.60 18.34 38.91 2.74
2134 2200 2.232208 GGAGGGCAATTTCCAGAAACTG 59.768 50.000 0.00 0.00 33.55 3.16
2180 2246 2.424956 CAAGCTAGCAAATGGAACCCTC 59.575 50.000 18.83 0.00 0.00 4.30
2209 2275 4.452455 TCTTGCTCGAGAAGGAAATGAAAC 59.548 41.667 18.75 0.00 34.60 2.78
2236 2302 3.244078 ACACAAGCTCGTAATGAAGGACA 60.244 43.478 0.00 0.00 0.00 4.02
2245 2311 4.260866 GGCTTTACAAACACAAGCTCGTAA 60.261 41.667 3.34 0.00 42.24 3.18
2249 2315 3.372060 GTGGCTTTACAAACACAAGCTC 58.628 45.455 3.34 0.00 42.24 4.09
2258 2330 2.294791 CACAATCGGGTGGCTTTACAAA 59.705 45.455 0.00 0.00 35.13 2.83
2261 2333 0.170339 GCACAATCGGGTGGCTTTAC 59.830 55.000 0.00 0.00 39.19 2.01
2292 2364 5.690865 TGTGGAGGAACTTTGTAGAACATT 58.309 37.500 0.00 0.00 41.55 2.71
2294 2366 4.764050 TGTGGAGGAACTTTGTAGAACA 57.236 40.909 0.00 0.00 41.55 3.18
2297 2371 6.361433 TGATTTTGTGGAGGAACTTTGTAGA 58.639 36.000 0.00 0.00 41.55 2.59
2301 2375 5.772825 TCTGATTTTGTGGAGGAACTTTG 57.227 39.130 0.00 0.00 41.55 2.77
2320 2394 0.877071 AGGCATTGAACAGCGTTCTG 59.123 50.000 17.86 11.95 45.71 3.02
2325 2399 3.763097 TTGATAAGGCATTGAACAGCG 57.237 42.857 0.00 0.00 0.00 5.18
2328 2402 5.022122 TCCCAATTGATAAGGCATTGAACA 58.978 37.500 7.12 0.00 0.00 3.18
2339 2427 5.250543 TCAGGAAGTGTCTCCCAATTGATAA 59.749 40.000 7.12 0.00 35.95 1.75
2350 2438 4.734398 ATGTGATCTCAGGAAGTGTCTC 57.266 45.455 3.58 0.00 0.00 3.36
2351 2439 5.495926 AAATGTGATCTCAGGAAGTGTCT 57.504 39.130 3.58 0.00 0.00 3.41
2356 2444 6.359804 TGGGATTAAATGTGATCTCAGGAAG 58.640 40.000 3.58 0.00 27.56 3.46
2357 2445 6.325993 TGGGATTAAATGTGATCTCAGGAA 57.674 37.500 3.58 0.00 27.56 3.36
2379 2467 7.406553 TCACGAGTGTCTTAGATTTTTGTTTG 58.593 34.615 2.97 0.00 0.00 2.93
2383 2471 7.351414 TCATCACGAGTGTCTTAGATTTTTG 57.649 36.000 2.97 0.00 0.00 2.44
2384 2472 8.553459 AATCATCACGAGTGTCTTAGATTTTT 57.447 30.769 2.97 0.00 0.00 1.94
2415 2536 9.891828 TTTGCACTAATACAAGTCTACAAAATG 57.108 29.630 0.00 0.00 0.00 2.32
2438 2560 2.545106 GGACCAAGCAAGTGCAATTTTG 59.455 45.455 6.00 0.03 45.16 2.44
2442 2564 1.708341 AAGGACCAAGCAAGTGCAAT 58.292 45.000 6.00 0.00 45.16 3.56
2457 2580 4.826616 TGATACATGGAGGATGGTAAGGA 58.173 43.478 0.00 0.00 36.23 3.36
2462 2585 7.993416 AGATATTTTGATACATGGAGGATGGT 58.007 34.615 0.00 0.00 36.23 3.55
2501 2624 4.870021 ACCTCTGCCCTTCAAGATTTAT 57.130 40.909 0.00 0.00 0.00 1.40
2504 2627 4.870021 AATACCTCTGCCCTTCAAGATT 57.130 40.909 0.00 0.00 0.00 2.40
2515 2638 7.159372 TCCTATTTCCGAAATAATACCTCTGC 58.841 38.462 13.36 0.00 33.26 4.26
2519 2642 7.989170 ACGTTTCCTATTTCCGAAATAATACCT 59.011 33.333 13.36 0.00 33.26 3.08
2523 2646 7.852971 TGACGTTTCCTATTTCCGAAATAAT 57.147 32.000 13.36 0.00 33.26 1.28
2530 2653 2.936498 AGCATGACGTTTCCTATTTCCG 59.064 45.455 0.00 0.00 0.00 4.30
2537 2660 2.034879 CCGCAGCATGACGTTTCCT 61.035 57.895 0.00 0.00 39.69 3.36
2553 2681 2.700773 GGCTTTTGCACCTAGCCCG 61.701 63.158 17.95 0.00 46.94 6.13
2576 2704 3.129988 CCAGTGATTTCATTTCCTCAGGC 59.870 47.826 0.00 0.00 0.00 4.85
2579 2707 4.455533 CGTTCCAGTGATTTCATTTCCTCA 59.544 41.667 0.00 0.00 0.00 3.86
2580 2708 4.695455 TCGTTCCAGTGATTTCATTTCCTC 59.305 41.667 0.00 0.00 0.00 3.71
2610 2738 4.035208 GGTGAACGGGCAATTATTCTAGTG 59.965 45.833 0.00 0.00 0.00 2.74
2618 2746 1.629353 TGTAGGGTGAACGGGCAATTA 59.371 47.619 0.00 0.00 0.00 1.40
2621 2749 0.322098 CATGTAGGGTGAACGGGCAA 60.322 55.000 0.00 0.00 0.00 4.52
2622 2750 1.195442 TCATGTAGGGTGAACGGGCA 61.195 55.000 0.00 0.00 0.00 5.36
2623 2751 0.035820 TTCATGTAGGGTGAACGGGC 60.036 55.000 0.00 0.00 31.07 6.13
2624 2752 2.288666 CATTCATGTAGGGTGAACGGG 58.711 52.381 0.00 0.00 38.31 5.28
2625 2753 2.985896 ACATTCATGTAGGGTGAACGG 58.014 47.619 0.00 0.00 39.68 4.44
2626 2754 4.000325 TGAACATTCATGTAGGGTGAACG 59.000 43.478 0.00 0.00 40.80 3.95
2627 2755 5.335661 GGTTGAACATTCATGTAGGGTGAAC 60.336 44.000 0.00 0.00 40.80 3.18
2628 2756 4.764823 GGTTGAACATTCATGTAGGGTGAA 59.235 41.667 0.00 0.00 40.80 3.18
2635 2763 6.318648 GCAATCCTAGGTTGAACATTCATGTA 59.681 38.462 21.28 0.00 40.80 2.29
2638 2766 5.513233 AGCAATCCTAGGTTGAACATTCAT 58.487 37.500 21.28 0.00 37.00 2.57
2644 2772 6.430000 TCAACTTAAGCAATCCTAGGTTGAAC 59.570 38.462 21.28 9.52 38.78 3.18
2650 2778 4.276926 GGCATCAACTTAAGCAATCCTAGG 59.723 45.833 0.82 0.82 0.00 3.02
2681 2844 3.490348 GCACCATATAGAAACCTGCCAT 58.510 45.455 0.00 0.00 0.00 4.40
2682 2845 2.422803 GGCACCATATAGAAACCTGCCA 60.423 50.000 0.00 0.00 41.98 4.92
2704 2873 3.066900 ACAGGATCCAATCGAGTTCTACG 59.933 47.826 15.82 0.00 0.00 3.51
2732 2902 1.732259 GTGGTGGTTCTGAGTTATGCG 59.268 52.381 0.00 0.00 0.00 4.73
2736 2906 2.033372 TGTCGTGGTGGTTCTGAGTTA 58.967 47.619 0.00 0.00 0.00 2.24
2765 2935 7.942341 TGTAATTAGAATCAGTTGGGTGTTCTT 59.058 33.333 0.00 0.00 32.02 2.52
2766 2936 7.458397 TGTAATTAGAATCAGTTGGGTGTTCT 58.542 34.615 0.00 0.00 33.96 3.01
2767 2937 7.681939 TGTAATTAGAATCAGTTGGGTGTTC 57.318 36.000 0.00 0.00 0.00 3.18
2774 2944 8.792633 TCCCTTTGTTGTAATTAGAATCAGTTG 58.207 33.333 0.00 0.00 0.00 3.16
2776 2946 8.934023 TTCCCTTTGTTGTAATTAGAATCAGT 57.066 30.769 0.00 0.00 0.00 3.41
2787 2957 9.137459 TGTCATAATTTCTTCCCTTTGTTGTAA 57.863 29.630 0.00 0.00 0.00 2.41
2789 2959 7.069331 TGTGTCATAATTTCTTCCCTTTGTTGT 59.931 33.333 0.00 0.00 0.00 3.32
2797 2967 6.410540 AGAGAGTGTGTCATAATTTCTTCCC 58.589 40.000 0.00 0.00 0.00 3.97
2798 2968 7.913674 AAGAGAGTGTGTCATAATTTCTTCC 57.086 36.000 0.00 0.00 0.00 3.46
2818 2991 4.690748 TCCACGCTGTTTTCATCTTAAGAG 59.309 41.667 11.53 3.73 0.00 2.85
2819 2992 4.637276 TCCACGCTGTTTTCATCTTAAGA 58.363 39.130 7.82 7.82 0.00 2.10
2823 2996 2.095059 GCATCCACGCTGTTTTCATCTT 60.095 45.455 0.00 0.00 0.00 2.40
2836 3009 5.682862 GCTTATTTACATTTCAGCATCCACG 59.317 40.000 0.00 0.00 0.00 4.94
2852 3025 2.596904 AGCTCCTTCGCGCTTATTTA 57.403 45.000 5.56 0.00 31.17 1.40
2858 3031 0.108138 ACATTTAGCTCCTTCGCGCT 60.108 50.000 5.56 0.00 40.15 5.92
2859 3032 1.258197 GTACATTTAGCTCCTTCGCGC 59.742 52.381 0.00 0.00 34.40 6.86
2860 3033 2.810650 AGTACATTTAGCTCCTTCGCG 58.189 47.619 0.00 0.00 34.40 5.87
2884 3059 7.482169 TTTATCTGGACAGAGTTCACAGTAT 57.518 36.000 8.14 0.00 41.33 2.12
2887 3062 7.678947 AAATTTATCTGGACAGAGTTCACAG 57.321 36.000 8.14 0.00 41.33 3.66
2898 3073 8.209917 ACAGACGGAAATAAATTTATCTGGAC 57.790 34.615 20.38 11.16 37.96 4.02
2910 3085 5.854010 ATCAGAGCTACAGACGGAAATAA 57.146 39.130 0.00 0.00 0.00 1.40
2918 3093 4.399004 ACCATGAATCAGAGCTACAGAC 57.601 45.455 0.00 0.00 0.00 3.51
2929 3104 8.694540 CCACAAATTTAATCCTACCATGAATCA 58.305 33.333 0.00 0.00 0.00 2.57
2949 3124 3.515502 CTGAGATCCCAGTAGTCCACAAA 59.484 47.826 0.00 0.00 0.00 2.83
2962 3137 1.065199 TGAATGGTGCACTGAGATCCC 60.065 52.381 17.98 0.00 0.00 3.85
2974 3149 1.272648 ACCAGGGGATGTTGAATGGTG 60.273 52.381 0.00 0.00 39.51 4.17
2989 3164 1.000171 GCAAGGCAAGAAAAGACCAGG 60.000 52.381 0.00 0.00 0.00 4.45
3014 3189 6.892658 ATGTACAATTTTGAGGTAGCAACA 57.107 33.333 0.00 0.00 0.00 3.33
3019 3194 9.840427 CACCTTAAATGTACAATTTTGAGGTAG 57.160 33.333 25.93 19.43 45.04 3.18
3022 3197 7.598493 CCACACCTTAAATGTACAATTTTGAGG 59.402 37.037 22.12 22.12 41.75 3.86
3030 3205 5.892119 TCCAAACCACACCTTAAATGTACAA 59.108 36.000 0.00 0.00 0.00 2.41
3041 3216 0.540365 CAGCCATCCAAACCACACCT 60.540 55.000 0.00 0.00 0.00 4.00
3064 3242 2.178580 CCCTTTGGCAGCAAATCCTAA 58.821 47.619 0.00 0.00 0.00 2.69
3068 3246 3.195396 TCATTACCCTTTGGCAGCAAATC 59.805 43.478 0.00 0.00 33.59 2.17
3069 3247 3.172339 TCATTACCCTTTGGCAGCAAAT 58.828 40.909 0.00 0.00 33.59 2.32
3072 3250 1.616725 CCTCATTACCCTTTGGCAGCA 60.617 52.381 0.00 0.00 33.59 4.41
3082 3260 7.284716 CCCTGTTTAAACTAATCCTCATTACCC 59.715 40.741 18.72 0.00 0.00 3.69
3083 3261 7.201794 GCCCTGTTTAAACTAATCCTCATTACC 60.202 40.741 18.72 0.00 0.00 2.85
3088 3266 4.020039 TCGCCCTGTTTAAACTAATCCTCA 60.020 41.667 18.72 0.00 0.00 3.86
3095 3273 1.339342 GGCCTCGCCCTGTTTAAACTA 60.339 52.381 18.72 5.30 44.06 2.24
3108 3286 3.472943 ATCTCCTGCATGGCCTCGC 62.473 63.158 3.32 7.22 35.26 5.03
3109 3287 1.597302 CATCTCCTGCATGGCCTCG 60.597 63.158 3.32 0.00 35.26 4.63
3114 3292 2.094390 CCAAACAACATCTCCTGCATGG 60.094 50.000 0.00 0.00 37.10 3.66
3118 3296 2.029918 GGAACCAAACAACATCTCCTGC 60.030 50.000 0.00 0.00 0.00 4.85
3119 3297 3.254166 CAGGAACCAAACAACATCTCCTG 59.746 47.826 1.10 1.10 41.72 3.86
3157 3335 4.832248 ACGAAATAGCATCTCTCCAAACA 58.168 39.130 0.00 0.00 0.00 2.83
3319 3499 8.947115 GGAGTGGTTATTGCATATAATTAGGTC 58.053 37.037 0.00 0.00 0.00 3.85
3324 3504 8.960591 GCTATGGAGTGGTTATTGCATATAATT 58.039 33.333 0.00 0.00 29.13 1.40
3325 3505 8.108999 TGCTATGGAGTGGTTATTGCATATAAT 58.891 33.333 0.00 0.00 29.13 1.28
3328 3508 5.879763 TGCTATGGAGTGGTTATTGCATAT 58.120 37.500 0.00 0.00 29.13 1.78
3329 3509 5.303259 TGCTATGGAGTGGTTATTGCATA 57.697 39.130 0.00 0.00 29.99 3.14
3330 3510 4.169059 TGCTATGGAGTGGTTATTGCAT 57.831 40.909 0.00 0.00 29.99 3.96
3331 3511 3.643199 TGCTATGGAGTGGTTATTGCA 57.357 42.857 0.00 0.00 31.91 4.08
3332 3512 3.066760 GGTTGCTATGGAGTGGTTATTGC 59.933 47.826 0.00 0.00 0.00 3.56
3333 3513 4.336433 CAGGTTGCTATGGAGTGGTTATTG 59.664 45.833 0.00 0.00 0.00 1.90
3334 3514 4.526970 CAGGTTGCTATGGAGTGGTTATT 58.473 43.478 0.00 0.00 0.00 1.40
3335 3515 3.685550 GCAGGTTGCTATGGAGTGGTTAT 60.686 47.826 0.00 0.00 40.96 1.89
3336 3516 2.355716 GCAGGTTGCTATGGAGTGGTTA 60.356 50.000 0.00 0.00 40.96 2.85
3338 3518 0.035056 GCAGGTTGCTATGGAGTGGT 60.035 55.000 0.00 0.00 40.96 4.16
3339 3519 0.035152 TGCAGGTTGCTATGGAGTGG 60.035 55.000 2.48 0.00 45.31 4.00
3340 3520 1.674441 CATGCAGGTTGCTATGGAGTG 59.326 52.381 2.48 0.00 45.31 3.51
3341 3521 1.561076 TCATGCAGGTTGCTATGGAGT 59.439 47.619 0.00 0.00 45.31 3.85
3342 3522 2.219458 CTCATGCAGGTTGCTATGGAG 58.781 52.381 0.00 1.21 45.31 3.86
3343 3523 1.561076 ACTCATGCAGGTTGCTATGGA 59.439 47.619 0.00 0.00 45.31 3.41
3344 3524 2.048444 ACTCATGCAGGTTGCTATGG 57.952 50.000 0.00 2.97 45.31 2.74
3345 3525 4.063998 TCTACTCATGCAGGTTGCTATG 57.936 45.455 0.00 5.20 45.31 2.23
3346 3526 4.760530 TTCTACTCATGCAGGTTGCTAT 57.239 40.909 0.00 0.00 45.31 2.97
3347 3527 4.551702 TTTCTACTCATGCAGGTTGCTA 57.448 40.909 0.00 0.00 45.31 3.49
3348 3528 3.423539 TTTCTACTCATGCAGGTTGCT 57.576 42.857 0.00 0.00 45.31 3.91
3349 3529 3.181493 CCATTTCTACTCATGCAGGTTGC 60.181 47.826 0.00 0.00 45.29 4.17
3350 3530 4.264253 TCCATTTCTACTCATGCAGGTTG 58.736 43.478 0.00 0.00 0.00 3.77
3351 3531 4.225942 TCTCCATTTCTACTCATGCAGGTT 59.774 41.667 0.00 0.00 0.00 3.50
3352 3532 3.776969 TCTCCATTTCTACTCATGCAGGT 59.223 43.478 0.00 0.00 0.00 4.00
3353 3533 4.412796 TCTCCATTTCTACTCATGCAGG 57.587 45.455 0.00 0.00 0.00 4.85
3354 3534 6.766944 AGATTTCTCCATTTCTACTCATGCAG 59.233 38.462 0.00 0.00 0.00 4.41
3355 3535 6.656902 AGATTTCTCCATTTCTACTCATGCA 58.343 36.000 0.00 0.00 0.00 3.96
3356 3536 6.765036 TGAGATTTCTCCATTTCTACTCATGC 59.235 38.462 5.17 0.00 42.20 4.06
3357 3537 8.775527 CATGAGATTTCTCCATTTCTACTCATG 58.224 37.037 3.12 3.12 46.20 3.07
3358 3538 8.492782 ACATGAGATTTCTCCATTTCTACTCAT 58.507 33.333 0.00 0.00 42.20 2.90
3359 3539 7.855375 ACATGAGATTTCTCCATTTCTACTCA 58.145 34.615 0.00 0.00 42.20 3.41
3360 3540 8.729805 AACATGAGATTTCTCCATTTCTACTC 57.270 34.615 0.00 0.00 42.20 2.59
3361 3541 7.493971 CGAACATGAGATTTCTCCATTTCTACT 59.506 37.037 0.00 0.00 42.20 2.57
3362 3542 7.278868 ACGAACATGAGATTTCTCCATTTCTAC 59.721 37.037 0.00 0.00 42.20 2.59
3363 3543 7.331026 ACGAACATGAGATTTCTCCATTTCTA 58.669 34.615 0.00 0.00 42.20 2.10
3364 3544 6.176183 ACGAACATGAGATTTCTCCATTTCT 58.824 36.000 0.00 0.00 42.20 2.52
3365 3545 6.092670 TGACGAACATGAGATTTCTCCATTTC 59.907 38.462 0.00 4.28 42.20 2.17
3366 3546 5.939883 TGACGAACATGAGATTTCTCCATTT 59.060 36.000 0.00 0.00 42.20 2.32
3367 3547 5.491070 TGACGAACATGAGATTTCTCCATT 58.509 37.500 0.00 0.00 42.20 3.16
3368 3548 5.089970 TGACGAACATGAGATTTCTCCAT 57.910 39.130 0.00 0.00 42.20 3.41
3369 3549 4.535526 TGACGAACATGAGATTTCTCCA 57.464 40.909 0.00 0.00 42.20 3.86
3370 3550 5.007136 GGATTGACGAACATGAGATTTCTCC 59.993 44.000 0.00 0.00 42.20 3.71
3371 3551 5.814705 AGGATTGACGAACATGAGATTTCTC 59.185 40.000 0.00 0.46 43.15 2.87
3372 3552 5.738909 AGGATTGACGAACATGAGATTTCT 58.261 37.500 0.00 0.00 0.00 2.52
3373 3553 5.582269 TGAGGATTGACGAACATGAGATTTC 59.418 40.000 0.00 0.00 0.00 2.17
3374 3554 5.491070 TGAGGATTGACGAACATGAGATTT 58.509 37.500 0.00 0.00 0.00 2.17
3375 3555 5.089970 TGAGGATTGACGAACATGAGATT 57.910 39.130 0.00 0.00 0.00 2.40
3376 3556 4.691175 CTGAGGATTGACGAACATGAGAT 58.309 43.478 0.00 0.00 0.00 2.75
3377 3557 3.677148 GCTGAGGATTGACGAACATGAGA 60.677 47.826 0.00 0.00 0.00 3.27
3378 3558 2.606725 GCTGAGGATTGACGAACATGAG 59.393 50.000 0.00 0.00 0.00 2.90
3379 3559 2.621338 GCTGAGGATTGACGAACATGA 58.379 47.619 0.00 0.00 0.00 3.07
3380 3560 1.667724 GGCTGAGGATTGACGAACATG 59.332 52.381 0.00 0.00 0.00 3.21
3381 3561 1.556911 AGGCTGAGGATTGACGAACAT 59.443 47.619 0.00 0.00 0.00 2.71
3382 3562 0.976641 AGGCTGAGGATTGACGAACA 59.023 50.000 0.00 0.00 0.00 3.18
3383 3563 2.961526 TAGGCTGAGGATTGACGAAC 57.038 50.000 0.00 0.00 0.00 3.95
3384 3564 2.365617 GGATAGGCTGAGGATTGACGAA 59.634 50.000 0.00 0.00 0.00 3.85
3385 3565 1.964223 GGATAGGCTGAGGATTGACGA 59.036 52.381 0.00 0.00 0.00 4.20
3386 3566 1.001406 GGGATAGGCTGAGGATTGACG 59.999 57.143 0.00 0.00 0.00 4.35
3387 3567 2.038295 CTGGGATAGGCTGAGGATTGAC 59.962 54.545 0.00 0.00 0.00 3.18
3388 3568 2.090550 TCTGGGATAGGCTGAGGATTGA 60.091 50.000 0.00 0.00 0.00 2.57
3389 3569 2.333069 TCTGGGATAGGCTGAGGATTG 58.667 52.381 0.00 0.00 0.00 2.67
3390 3570 2.803285 TCTGGGATAGGCTGAGGATT 57.197 50.000 0.00 0.00 0.00 3.01
3391 3571 2.113233 TGATCTGGGATAGGCTGAGGAT 59.887 50.000 0.00 0.00 0.00 3.24
3392 3572 1.505098 TGATCTGGGATAGGCTGAGGA 59.495 52.381 0.00 0.00 0.00 3.71
3393 3573 2.021262 TGATCTGGGATAGGCTGAGG 57.979 55.000 0.00 0.00 0.00 3.86
3394 3574 4.202440 ACAATTGATCTGGGATAGGCTGAG 60.202 45.833 13.59 0.00 0.00 3.35
3395 3575 3.718434 ACAATTGATCTGGGATAGGCTGA 59.282 43.478 13.59 0.00 0.00 4.26
3396 3576 4.096190 ACAATTGATCTGGGATAGGCTG 57.904 45.455 13.59 0.00 0.00 4.85
3403 3583 4.087907 TCATGCAAACAATTGATCTGGGA 58.912 39.130 13.59 0.00 38.94 4.37
3405 3585 3.863424 GCTCATGCAAACAATTGATCTGG 59.137 43.478 13.59 0.00 38.94 3.86
3407 3587 4.461431 TCAGCTCATGCAAACAATTGATCT 59.539 37.500 13.59 0.00 42.74 2.75
3414 3594 0.599558 GGCTCAGCTCATGCAAACAA 59.400 50.000 0.00 0.00 42.74 2.83
3416 3596 0.170561 CAGGCTCAGCTCATGCAAAC 59.829 55.000 0.00 0.00 42.74 2.93
3427 3607 3.256631 AGCAATAAACAAACCAGGCTCAG 59.743 43.478 0.00 0.00 0.00 3.35
3429 3609 3.942130 AGCAATAAACAAACCAGGCTC 57.058 42.857 0.00 0.00 0.00 4.70
3443 3623 4.912317 TGTTAGGTTGGGTGTAGCAATA 57.088 40.909 0.00 0.00 0.00 1.90
3446 3626 3.799432 ATTGTTAGGTTGGGTGTAGCA 57.201 42.857 0.00 0.00 0.00 3.49
3467 3647 8.250332 AGTGCAGAATCTTTCACTTTGTTTTTA 58.750 29.630 8.55 0.00 36.48 1.52
3473 3653 6.963796 AGTTAGTGCAGAATCTTTCACTTTG 58.036 36.000 16.57 0.00 40.01 2.77
3478 3658 5.858381 ACAGAGTTAGTGCAGAATCTTTCA 58.142 37.500 0.00 0.00 0.00 2.69
3487 3667 3.251479 TGCCATACAGAGTTAGTGCAG 57.749 47.619 0.00 0.00 0.00 4.41
3499 3679 2.438254 CGCTTGGGCTGCCATACA 60.438 61.111 22.05 6.51 36.09 2.29
3509 3689 1.295357 TTGACGTGTATGCGCTTGGG 61.295 55.000 9.73 0.00 34.88 4.12
3524 3704 1.308998 CAAGGGTGTGAGTGGTTGAC 58.691 55.000 0.00 0.00 0.00 3.18
3525 3705 0.182537 CCAAGGGTGTGAGTGGTTGA 59.817 55.000 0.00 0.00 0.00 3.18
3540 3720 2.704725 ACAATACTTTGCGCACCAAG 57.295 45.000 11.12 15.58 36.22 3.61
3543 3723 4.789784 TCTTTTACAATACTTTGCGCACC 58.210 39.130 11.12 0.00 36.22 5.01
3571 3751 8.558973 TGGAACTAAGAGTGAGTTACTAGTAC 57.441 38.462 0.91 0.00 40.53 2.73
3572 3752 9.578576 TTTGGAACTAAGAGTGAGTTACTAGTA 57.421 33.333 0.00 0.00 40.53 1.82
3574 3754 8.358148 TGTTTGGAACTAAGAGTGAGTTACTAG 58.642 37.037 0.00 0.00 40.53 2.57
3578 3758 7.562135 ACTTGTTTGGAACTAAGAGTGAGTTA 58.438 34.615 0.00 0.00 37.27 2.24
3579 3759 6.415573 ACTTGTTTGGAACTAAGAGTGAGTT 58.584 36.000 0.00 0.00 39.85 3.01
3580 3760 5.990668 ACTTGTTTGGAACTAAGAGTGAGT 58.009 37.500 0.00 0.00 0.00 3.41
3581 3761 7.382759 GTCTACTTGTTTGGAACTAAGAGTGAG 59.617 40.741 0.00 0.00 0.00 3.51
3582 3762 7.147794 TGTCTACTTGTTTGGAACTAAGAGTGA 60.148 37.037 0.00 0.00 0.00 3.41
3583 3763 6.984474 TGTCTACTTGTTTGGAACTAAGAGTG 59.016 38.462 0.00 0.00 0.00 3.51
3584 3764 7.120923 TGTCTACTTGTTTGGAACTAAGAGT 57.879 36.000 0.00 0.00 0.00 3.24
3616 3802 1.603802 CGATGCAGTTCAACAACCAGT 59.396 47.619 0.00 0.00 32.22 4.00
3623 3809 3.120649 GGTCTACAACGATGCAGTTCAAC 60.121 47.826 0.00 0.00 30.96 3.18
3640 3826 7.499563 TGTGCAAATTTTACACTAACAGGTCTA 59.500 33.333 17.58 0.00 35.33 2.59
3657 3843 7.557358 TCAGATATCTGTACCAATGTGCAAATT 59.443 33.333 27.80 0.00 44.12 1.82
3680 3866 8.190888 ACTGAAGAAAGATTACGCTAATTCAG 57.809 34.615 9.00 9.00 34.29 3.02
3687 3873 7.103641 TGGAATTACTGAAGAAAGATTACGCT 58.896 34.615 0.00 0.00 0.00 5.07
3692 3878 9.927081 ATACCATGGAATTACTGAAGAAAGATT 57.073 29.630 21.47 0.00 0.00 2.40
3740 3926 2.028561 ATCACAACCAAATTGGGCCT 57.971 45.000 17.27 0.00 41.98 5.19
3741 3927 3.260632 AGTTATCACAACCAAATTGGGCC 59.739 43.478 17.27 0.00 41.98 5.80
3746 3932 8.313292 ACATGCAATAGTTATCACAACCAAATT 58.687 29.630 0.00 0.00 0.00 1.82
3754 3940 8.022550 CAGTTCAAACATGCAATAGTTATCACA 58.977 33.333 0.00 0.00 0.00 3.58
3771 3957 4.241681 TGTTTGCACCTTTCAGTTCAAAC 58.758 39.130 11.33 11.33 41.86 2.93
3779 3965 6.577103 TCATGTAATTTGTTTGCACCTTTCA 58.423 32.000 0.00 0.00 32.44 2.69
3855 4041 3.132160 CAGAGCTGCCATCATTCAGTAG 58.868 50.000 0.00 0.00 33.09 2.57
3925 4111 4.713553 TGGCTAACTCATTCTGTCAAACA 58.286 39.130 0.00 0.00 0.00 2.83
3926 4112 5.163713 GGATGGCTAACTCATTCTGTCAAAC 60.164 44.000 0.00 0.00 0.00 2.93
3952 4138 6.220726 TCCACGAGAAGATGTATGAATTCA 57.779 37.500 11.26 11.26 0.00 2.57
3970 4156 1.296056 GACGGTCCATGGTTTCCACG 61.296 60.000 12.58 10.66 35.80 4.94
3988 4174 1.944024 CTTACCACGTTGCCAAAGTGA 59.056 47.619 22.44 3.21 38.06 3.41
4014 4200 6.119536 TCACAATACTGAATCATTGGGGTAC 58.880 40.000 0.00 0.00 36.42 3.34
4060 4246 0.384669 ACGGACGTAGCATTAGCCTC 59.615 55.000 0.00 0.00 43.56 4.70
4061 4247 0.822164 AACGGACGTAGCATTAGCCT 59.178 50.000 0.00 0.00 43.56 4.58
4136 4322 4.849813 ACCATTCATCACCATCTCTTCA 57.150 40.909 0.00 0.00 0.00 3.02
4279 4465 1.211949 ACAACGGGGGAATCTATGGTG 59.788 52.381 0.00 0.00 0.00 4.17
4280 4466 1.211949 CACAACGGGGGAATCTATGGT 59.788 52.381 0.00 0.00 0.00 3.55
4295 4481 1.197721 CGGCATTTCTCCTCACACAAC 59.802 52.381 0.00 0.00 0.00 3.32
4372 4558 6.208599 GGGGTCTTCATTTTCAACATTACAGA 59.791 38.462 0.00 0.00 0.00 3.41
4471 4677 2.094258 AGTGACTCATGTTTTATGCGCG 59.906 45.455 0.00 0.00 0.00 6.86
4478 4684 9.603921 AAAAATTCATTCAGTGACTCATGTTTT 57.396 25.926 0.00 0.00 36.32 2.43
4500 4706 9.726438 TTGGAAGTTTTCAGGTTTTCATAAAAA 57.274 25.926 0.00 0.00 31.13 1.94
4555 4761 4.284490 TGCTCAAGTGATCATAGGGGTATC 59.716 45.833 0.00 0.00 0.00 2.24
4559 4816 3.784511 ATGCTCAAGTGATCATAGGGG 57.215 47.619 0.00 0.00 30.04 4.79
4564 4821 6.869695 TGCAAAAATATGCTCAAGTGATCAT 58.130 32.000 0.00 3.38 46.54 2.45
4607 4877 4.662961 CAGGTCGCGACAGTGGCA 62.663 66.667 37.26 0.00 33.40 4.92
4613 4883 3.207547 CTGTGACCAGGTCGCGACA 62.208 63.158 37.26 17.43 44.86 4.35
4619 4889 1.373497 CAGCGTCTGTGACCAGGTC 60.373 63.158 13.35 13.35 39.31 3.85
4629 4899 2.575993 CTGTCCCCTCAGCGTCTG 59.424 66.667 1.02 1.02 0.00 3.51
4635 4905 1.227089 CGATTCGCTGTCCCCTCAG 60.227 63.158 0.00 0.00 38.35 3.35
4637 4907 1.066587 CTCGATTCGCTGTCCCCTC 59.933 63.158 0.00 0.00 0.00 4.30
4638 4908 3.082579 GCTCGATTCGCTGTCCCCT 62.083 63.158 0.00 0.00 0.00 4.79
4676 4965 4.436998 CCCAGTCGTCGACAGCCC 62.437 72.222 26.17 0.00 34.60 5.19
4709 4998 1.130561 GCATTCGCCAACTGGAACTAC 59.869 52.381 0.00 0.00 37.39 2.73
4718 5007 1.136147 CTGAGCTGCATTCGCCAAC 59.864 57.895 1.02 0.00 37.32 3.77
4719 5008 2.693762 GCTGAGCTGCATTCGCCAA 61.694 57.895 1.02 0.00 37.32 4.52
4720 5009 2.242797 TAGCTGAGCTGCATTCGCCA 62.243 55.000 18.79 0.00 40.10 5.69
4721 5010 0.883814 ATAGCTGAGCTGCATTCGCC 60.884 55.000 18.79 0.00 40.10 5.54
4722 5011 0.235144 CATAGCTGAGCTGCATTCGC 59.765 55.000 18.79 0.00 40.10 4.70
4822 5137 4.261994 CCGAGTGGGAAATGTGAATTGTTT 60.262 41.667 0.00 0.00 38.47 2.83
5003 5444 1.599542 GCAGATTTGGACGCTATGGTC 59.400 52.381 0.00 0.00 36.18 4.02
5012 5453 3.042887 GTCGTTTGTTGCAGATTTGGAC 58.957 45.455 0.00 0.00 0.00 4.02
5016 5457 2.948979 TGAGGTCGTTTGTTGCAGATTT 59.051 40.909 0.00 0.00 0.00 2.17
5021 5462 3.077229 CAAATGAGGTCGTTTGTTGCA 57.923 42.857 14.15 0.00 43.95 4.08
5050 5492 3.798878 CCGATATTATTCATCTGCGCGAT 59.201 43.478 12.10 5.87 0.00 4.58
5055 5497 8.997621 TTACTAACCCGATATTATTCATCTGC 57.002 34.615 0.00 0.00 0.00 4.26
5111 5553 6.500684 TTTCCTTTGCTGCTAAGTTGATAG 57.499 37.500 19.55 6.23 0.00 2.08
5146 5588 3.445008 TCCCTACTGATATCCTGATGGC 58.555 50.000 0.00 0.00 0.00 4.40
5147 5589 6.677552 TCTATCCCTACTGATATCCTGATGG 58.322 44.000 0.00 0.00 0.00 3.51
5163 5605 5.189342 CCTATCAGATGCACAATCTATCCCT 59.811 44.000 0.00 0.00 44.24 4.20
5165 5607 6.047511 ACCTATCAGATGCACAATCTATCC 57.952 41.667 0.00 0.00 44.24 2.59
5166 5608 7.835822 AGTACCTATCAGATGCACAATCTATC 58.164 38.462 0.00 0.00 44.24 2.08
5211 5653 3.691118 TGGCTGCATATTGTTTGAGTCTC 59.309 43.478 0.50 0.00 0.00 3.36
5266 5709 1.908340 CTGGAGTTCTCTGCTGGGGG 61.908 65.000 0.00 0.00 33.13 5.40
5272 5715 1.803555 GCACTTTCTGGAGTTCTCTGC 59.196 52.381 0.00 0.00 0.00 4.26
5273 5716 3.117491 TGCACTTTCTGGAGTTCTCTG 57.883 47.619 0.00 0.00 0.00 3.35
5283 5726 5.484173 TCACTAGTTTGTTGCACTTTCTG 57.516 39.130 0.00 0.00 0.00 3.02
5287 5730 5.897377 AGTTTCACTAGTTTGTTGCACTT 57.103 34.783 0.00 0.00 0.00 3.16
5288 5731 6.604735 CTAGTTTCACTAGTTTGTTGCACT 57.395 37.500 0.00 0.00 42.41 4.40
5290 5733 5.588648 AAGCTAGTTTCACTAGTTTGTTGCA 59.411 36.000 11.04 0.00 46.05 4.08
5291 5734 6.061231 AAGCTAGTTTCACTAGTTTGTTGC 57.939 37.500 11.04 0.00 46.05 4.17
5346 5790 2.601266 CGTCGTCATTTTGTGGTGAACC 60.601 50.000 0.00 0.00 0.00 3.62
5363 5807 3.968096 TGTCGTAGTTACTTGTTTCGTCG 59.032 43.478 0.00 0.00 0.00 5.12
5366 5810 5.159209 AGGATGTCGTAGTTACTTGTTTCG 58.841 41.667 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.