AutoCloner

Multiple sequence alignment - TraesCS6B01G140300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G140300	chr6B	100.000	3169	0	0	1	3169	139418756	139415588	0.000000e+00	5853.0
1	TraesCS6B01G140300	chr6B	94.413	1253	46	2	1299	2548	707973768	707974999	0.000000e+00	1905.0
2	TraesCS6B01G140300	chr2B	96.990	2193	56	7	1	2190	652608671	652606486	0.000000e+00	3675.0
3	TraesCS6B01G140300	chr2B	90.939	607	50	5	2566	3169	9663351	9662747	0.000000e+00	811.0
4	TraesCS6B01G140300	chr2B	95.046	323	14	2	2254	2574	652606485	652606163	1.010000e-139	507.0
5	TraesCS6B01G140300	chr2B	91.566	83	5	2	311	391	250716888	250716970	2.580000e-21	113.0
6	TraesCS6B01G140300	chr3B	96.306	2193	57	9	1	2190	741392073	741389902	0.000000e+00	3579.0
7	TraesCS6B01G140300	chr3B	90.924	606	51	4	2566	3169	9686602	9685999	0.000000e+00	811.0
8	TraesCS6B01G140300	chr3B	91.566	83	5	2	311	391	731273227	731273309	2.580000e-21	113.0
9	TraesCS6B01G140300	chr6A	95.221	1653	51	6	929	2574	121671180	121672811	0.000000e+00	2590.0
10	TraesCS6B01G140300	chr7B	97.441	1407	28	6	1	1404	650234105	650232704	0.000000e+00	2392.0
11	TraesCS6B01G140300	chr7B	92.360	589	40	5	2584	3169	211685855	211685269	0.000000e+00	833.0
12	TraesCS6B01G140300	chr7B	91.486	599	44	6	2574	3169	726052120	726051526	0.000000e+00	817.0
13	TraesCS6B01G140300	chr7B	94.297	491	25	2	428	917	693336615	693337103	0.000000e+00	749.0
14	TraesCS6B01G140300	chr5D	93.083	1547	81	5	929	2472	409714988	409716511	0.000000e+00	2241.0
15	TraesCS6B01G140300	chr5D	91.860	1548	99	18	929	2472	564867683	564869207	0.000000e+00	2135.0
16	TraesCS6B01G140300	chr5D	92.439	529	35	2	389	917	564879442	564879965	0.000000e+00	750.0
17	TraesCS6B01G140300	chr5D	92.060	529	37	2	389	917	90296167	90296690	0.000000e+00	739.0
18	TraesCS6B01G140300	chr5D	87.896	347	21	6	2126	2472	90285891	90286216	3.830000e-104	388.0
19	TraesCS6B01G140300	chr5D	89.552	67	7	0	2469	2535	90286735	90286801	5.630000e-13	86.1
20	TraesCS6B01G140300	chr5D	89.552	67	7	0	2469	2535	564869725	564869791	5.630000e-13	86.1
21	TraesCS6B01G140300	chrUn	92.825	1547	86	9	929	2472	70175516	70173992	0.000000e+00	2218.0
22	TraesCS6B01G140300	chrUn	92.628	529	34	2	389	917	70163983	70163460	0.000000e+00	756.0
23	TraesCS6B01G140300	chrUn	93.902	492	26	2	428	917	289849343	289849832	0.000000e+00	739.0
24	TraesCS6B01G140300	chrUn	93.103	58	4	0	2478	2535	70173464	70173407	5.630000e-13	86.1
25	TraesCS6B01G140300	chr7D	92.696	1547	88	9	929	2472	575649041	575650565	0.000000e+00	2207.0
26	TraesCS6B01G140300	chr7D	92.439	529	35	2	389	917	575660842	575661365	0.000000e+00	750.0
27	TraesCS6B01G140300	chr7D	89.231	65	7	0	2469	2533	575651084	575651148	7.290000e-12	82.4
28	TraesCS6B01G140300	chr3D	92.502	1547	91	9	929	2472	419635706	419634182	0.000000e+00	2191.0
29	TraesCS6B01G140300	chr3D	92.437	1547	88	10	929	2472	355119219	355117699	0.000000e+00	2182.0
30	TraesCS6B01G140300	chr3D	92.439	529	35	2	389	917	419620178	419619655	0.000000e+00	750.0
31	TraesCS6B01G140300	chr3D	92.250	529	36	2	389	917	355107687	355107164	0.000000e+00	745.0
32	TraesCS6B01G140300	chr3D	93.103	58	4	0	2478	2535	419633654	419633597	5.630000e-13	86.1
33	TraesCS6B01G140300	chr4B	91.570	605	46	5	2566	3167	128092858	128092256	0.000000e+00	830.0
34	TraesCS6B01G140300	chr4B	90.924	606	50	5	2566	3168	395849876	395849273	0.000000e+00	809.0
35	TraesCS6B01G140300	chr4B	93.496	492	27	3	428	917	322753394	322753882	0.000000e+00	726.0
36	TraesCS6B01G140300	chr4B	91.463	82	6	1	311	391	321635653	321635572	9.290000e-21	111.0
37	TraesCS6B01G140300	chr5A	91.269	607	48	5	2566	3169	585144388	585143784	0.000000e+00	822.0
38	TraesCS6B01G140300	chr5A	91.104	607	49	5	2566	3169	114419867	114420471	0.000000e+00	817.0
39	TraesCS6B01G140300	chr5B	90.615	618	51	7	2557	3169	127743054	127742439	0.000000e+00	813.0
40	TraesCS6B01G140300	chr5B	91.463	82	6	1	311	391	317673312	317673231	9.290000e-21	111.0
41	TraesCS6B01G140300	chr2D	93.006	529	28	4	389	917	88624825	88625344	0.000000e+00	763.0
42	TraesCS6B01G140300	chr2D	92.843	517	33	3	401	917	88709683	88710195	0.000000e+00	747.0
43	TraesCS6B01G140300	chr4A	91.566	83	5	2	311	391	699974253	699974335	2.580000e-21	113.0
44	TraesCS6B01G140300	chr4D	91.463	82	6	1	311	391	324008261	324008342	9.290000e-21	111.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G140300	chr6B	139415588	139418756	3168	True	5853.00	5853	100.0000	1	3169	1	chr6B.!!$R1	3168
1	TraesCS6B01G140300	chr6B	707973768	707974999	1231	False	1905.00	1905	94.4130	1299	2548	1	chr6B.!!$F1	1249
2	TraesCS6B01G140300	chr2B	652606163	652608671	2508	True	2091.00	3675	96.0180	1	2574	2	chr2B.!!$R2	2573
3	TraesCS6B01G140300	chr2B	9662747	9663351	604	True	811.00	811	90.9390	2566	3169	1	chr2B.!!$R1	603
4	TraesCS6B01G140300	chr3B	741389902	741392073	2171	True	3579.00	3579	96.3060	1	2190	1	chr3B.!!$R2	2189
5	TraesCS6B01G140300	chr3B	9685999	9686602	603	True	811.00	811	90.9240	2566	3169	1	chr3B.!!$R1	603
6	TraesCS6B01G140300	chr6A	121671180	121672811	1631	False	2590.00	2590	95.2210	929	2574	1	chr6A.!!$F1	1645
7	TraesCS6B01G140300	chr7B	650232704	650234105	1401	True	2392.00	2392	97.4410	1	1404	1	chr7B.!!$R2	1403
8	TraesCS6B01G140300	chr7B	211685269	211685855	586	True	833.00	833	92.3600	2584	3169	1	chr7B.!!$R1	585
9	TraesCS6B01G140300	chr7B	726051526	726052120	594	True	817.00	817	91.4860	2574	3169	1	chr7B.!!$R3	595
10	TraesCS6B01G140300	chr5D	409714988	409716511	1523	False	2241.00	2241	93.0830	929	2472	1	chr5D.!!$F2	1543
11	TraesCS6B01G140300	chr5D	564867683	564869791	2108	False	1110.55	2135	90.7060	929	2535	2	chr5D.!!$F5	1606
12	TraesCS6B01G140300	chr5D	564879442	564879965	523	False	750.00	750	92.4390	389	917	1	chr5D.!!$F3	528
13	TraesCS6B01G140300	chr5D	90296167	90296690	523	False	739.00	739	92.0600	389	917	1	chr5D.!!$F1	528
14	TraesCS6B01G140300	chr5D	90285891	90286801	910	False	237.05	388	88.7240	2126	2535	2	chr5D.!!$F4	409
15	TraesCS6B01G140300	chrUn	70173407	70175516	2109	True	1152.05	2218	92.9640	929	2535	2	chrUn.!!$R2	1606
16	TraesCS6B01G140300	chrUn	70163460	70163983	523	True	756.00	756	92.6280	389	917	1	chrUn.!!$R1	528
17	TraesCS6B01G140300	chr7D	575649041	575651148	2107	False	1144.70	2207	90.9635	929	2533	2	chr7D.!!$F2	1604
18	TraesCS6B01G140300	chr7D	575660842	575661365	523	False	750.00	750	92.4390	389	917	1	chr7D.!!$F1	528
19	TraesCS6B01G140300	chr3D	355117699	355119219	1520	True	2182.00	2182	92.4370	929	2472	1	chr3D.!!$R2	1543
20	TraesCS6B01G140300	chr3D	419633597	419635706	2109	True	1138.55	2191	92.8025	929	2535	2	chr3D.!!$R4	1606
21	TraesCS6B01G140300	chr3D	419619655	419620178	523	True	750.00	750	92.4390	389	917	1	chr3D.!!$R3	528
22	TraesCS6B01G140300	chr3D	355107164	355107687	523	True	745.00	745	92.2500	389	917	1	chr3D.!!$R1	528
23	TraesCS6B01G140300	chr4B	128092256	128092858	602	True	830.00	830	91.5700	2566	3167	1	chr4B.!!$R1	601
24	TraesCS6B01G140300	chr4B	395849273	395849876	603	True	809.00	809	90.9240	2566	3168	1	chr4B.!!$R3	602
25	TraesCS6B01G140300	chr5A	585143784	585144388	604	True	822.00	822	91.2690	2566	3169	1	chr5A.!!$R1	603
26	TraesCS6B01G140300	chr5A	114419867	114420471	604	False	817.00	817	91.1040	2566	3169	1	chr5A.!!$F1	603
27	TraesCS6B01G140300	chr5B	127742439	127743054	615	True	813.00	813	90.6150	2557	3169	1	chr5B.!!$R1	612
28	TraesCS6B01G140300	chr2D	88624825	88625344	519	False	763.00	763	93.0060	389	917	1	chr2D.!!$F1	528
29	TraesCS6B01G140300	chr2D	88709683	88710195	512	False	747.00	747	92.8430	401	917	1	chr2D.!!$F2	516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
677	696	4.679654	GCACGGTTCTGTTTTTCCATTTAG	59.320	41.667	0.00	0.0	0.00	1.85	F
1715	1737	2.358939	AGAATCGTGTGACGGTTACC	57.641	50.000	0.24	0.0	45.99	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2136	2159	0.179032	TTTCTGGTTGCTTCGAGCCA	60.179	50.0	4.73	0.0	41.51	4.75	R
2961	3550	0.598562	ATGCGCCTCGACGATATCTT	59.401	50.0	4.18	0.0	34.06	2.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
167	168	5.728637	ATTTGCCCCTTTTAGAGTTTCTG	57.271	39.130	0.00	0.00	0.00	3.02
242	243	7.155328	AGACTACCTTGCGATTATTATTCCTG	58.845	38.462	0.00	0.00	0.00	3.86
677	696	4.679654	GCACGGTTCTGTTTTTCCATTTAG	59.320	41.667	0.00	0.00	0.00	1.85
713	732	7.060421	ACTTCAATTCCTCTTACAGAAACCAA	58.940	34.615	0.00	0.00	0.00	3.67
757	776	8.338259	AGCATCGTTATTTCATATTTGTGAGAC	58.662	33.333	0.00	0.00	0.00	3.36
1020	1039	3.744940	ATGGAAGACATGGACATTGGT	57.255	42.857	0.00	0.00	38.70	3.67
1113	1132	7.378966	TCTTCTAATCACCAGTTGTAGTTCAG	58.621	38.462	0.00	0.00	0.00	3.02
1586	1608	7.826918	TTTAACCCTTACTTTGCTTGTACAT	57.173	32.000	0.00	0.00	0.00	2.29
1593	1615	7.094205	CCCTTACTTTGCTTGTACATGAGAATT	60.094	37.037	12.65	3.65	0.00	2.17
1660	1682	2.979678	TGAAAGCTCTGAAGTTACCCCT	59.020	45.455	0.00	0.00	0.00	4.79
1715	1737	2.358939	AGAATCGTGTGACGGTTACC	57.641	50.000	0.24	0.00	45.99	2.85
1730	1752	7.172019	GTGACGGTTACCTTCATTTCTTCTTTA	59.828	37.037	13.64	0.00	34.39	1.85
1766	1788	4.127171	GTGCACTTGTTCCAAGTTCTCTA	58.873	43.478	10.32	0.00	0.00	2.43
1792	1815	5.873712	CAGGTGCAATCTTAGATAGCTATGG	59.126	44.000	11.94	0.00	0.00	2.74
2136	2159	4.763793	ACATTGCTATGAAGTTTGAGCAGT	59.236	37.500	15.23	3.21	45.14	4.40
2138	2161	3.076621	TGCTATGAAGTTTGAGCAGTGG	58.923	45.455	3.85	0.00	39.93	4.00
2186	2209	2.880890	GTGAGCTTTGGTCAATGTGTCT	59.119	45.455	0.88	0.00	41.75	3.41
2219	2242	4.393062	TGCTTCTGTGCTTACTAAATCAGC	59.607	41.667	0.00	0.00	0.00	4.26
2220	2243	4.633565	GCTTCTGTGCTTACTAAATCAGCT	59.366	41.667	0.00	0.00	34.42	4.24
2221	2244	5.123027	GCTTCTGTGCTTACTAAATCAGCTT	59.877	40.000	0.00	0.00	34.42	3.74
2222	2245	6.674278	GCTTCTGTGCTTACTAAATCAGCTTC	60.674	42.308	0.00	0.00	34.42	3.86
2223	2246	6.042638	TCTGTGCTTACTAAATCAGCTTCT	57.957	37.500	0.00	0.00	34.42	2.85
2224	2247	5.871524	TCTGTGCTTACTAAATCAGCTTCTG	59.128	40.000	0.00	0.00	34.42	3.02
2225	2248	5.551233	TGTGCTTACTAAATCAGCTTCTGT	58.449	37.500	0.00	0.00	34.42	3.41
2226	2249	5.409520	TGTGCTTACTAAATCAGCTTCTGTG	59.590	40.000	0.00	0.00	34.42	3.66
2227	2250	4.393062	TGCTTACTAAATCAGCTTCTGTGC	59.607	41.667	0.00	0.00	34.42	4.57
2228	2251	4.633565	GCTTACTAAATCAGCTTCTGTGCT	59.366	41.667	0.00	0.00	45.18	4.40
2229	2252	5.123027	GCTTACTAAATCAGCTTCTGTGCTT	59.877	40.000	0.00	0.00	41.98	3.91
2230	2253	6.313905	GCTTACTAAATCAGCTTCTGTGCTTA	59.686	38.462	0.00	0.00	41.98	3.09
2231	2254	7.596749	TTACTAAATCAGCTTCTGTGCTTAC	57.403	36.000	0.00	0.00	41.98	2.34
2232	2255	5.799213	ACTAAATCAGCTTCTGTGCTTACT	58.201	37.500	0.00	0.00	41.98	2.24
2233	2256	6.936279	ACTAAATCAGCTTCTGTGCTTACTA	58.064	36.000	0.00	0.00	41.98	1.82
2234	2257	7.386851	ACTAAATCAGCTTCTGTGCTTACTAA	58.613	34.615	0.00	0.00	41.98	2.24
2235	2258	6.734104	AAATCAGCTTCTGTGCTTACTAAG	57.266	37.500	0.00	0.00	41.98	2.18
2236	2259	4.873746	TCAGCTTCTGTGCTTACTAAGT	57.126	40.909	0.00	0.00	41.98	2.24
2237	2260	4.810790	TCAGCTTCTGTGCTTACTAAGTC	58.189	43.478	0.00	0.00	41.98	3.01
2238	2261	4.280929	TCAGCTTCTGTGCTTACTAAGTCA	59.719	41.667	0.00	0.00	41.98	3.41
2239	2262	4.624882	CAGCTTCTGTGCTTACTAAGTCAG	59.375	45.833	12.71	12.71	41.98	3.51
2298	2363	0.388907	CATTTTGGCGTGCTCCAAGG	60.389	55.000	5.95	0.00	45.84	3.61
2352	2417	5.682471	GCTGCCTCTATGCTGAAAAGTAGTA	60.682	44.000	0.00	0.00	32.50	1.82
2547	3134	5.598830	TGTTCTCTCTGTAGTCAAAAGGAGT	59.401	40.000	0.00	0.00	0.00	3.85
2548	3135	6.776116	TGTTCTCTCTGTAGTCAAAAGGAGTA	59.224	38.462	0.00	0.00	0.00	2.59
2556	3143	6.350629	GTAGTCAAAAGGAGTACTAACCCA	57.649	41.667	0.00	0.00	45.25	4.51
2557	3144	6.944096	GTAGTCAAAAGGAGTACTAACCCAT	58.056	40.000	0.00	0.00	45.25	4.00
2558	3145	6.449830	AGTCAAAAGGAGTACTAACCCATT	57.550	37.500	0.00	0.00	0.00	3.16
2559	3146	6.849151	AGTCAAAAGGAGTACTAACCCATTT	58.151	36.000	0.00	0.00	0.00	2.32
2560	3147	7.295340	AGTCAAAAGGAGTACTAACCCATTTT	58.705	34.615	0.00	0.00	0.00	1.82
2561	3148	7.447545	AGTCAAAAGGAGTACTAACCCATTTTC	59.552	37.037	0.00	0.00	0.00	2.29
2562	3149	6.717997	TCAAAAGGAGTACTAACCCATTTTCC	59.282	38.462	0.00	0.00	0.00	3.13
2563	3150	6.464530	AAAGGAGTACTAACCCATTTTCCT	57.535	37.500	0.00	0.00	35.42	3.36
2564	3151	7.578458	AAAGGAGTACTAACCCATTTTCCTA	57.422	36.000	0.00	0.00	33.64	2.94
2663	3250	2.288030	GCAAGTGCACTGCATCTTCTTT	60.288	45.455	22.49	0.00	41.91	2.52
2952	3541	4.033932	CGTCGGAATGAAGCAAATGATACA	59.966	41.667	0.00	0.00	0.00	2.29
2953	3542	5.277490	CGTCGGAATGAAGCAAATGATACAT	60.277	40.000	0.00	0.00	0.00	2.29
2986	3575	1.076533	TCGTCGAGGCGCATCTTTTC	61.077	55.000	20.86	6.54	0.00	2.29
2992	3581	2.096069	CGAGGCGCATCTTTTCCATATG	60.096	50.000	20.86	0.00	0.00	1.78
2996	3585	5.072741	AGGCGCATCTTTTCCATATGTATT	58.927	37.500	10.83	0.00	0.00	1.89
2997	3586	6.237901	AGGCGCATCTTTTCCATATGTATTA	58.762	36.000	10.83	0.00	0.00	0.98
3040	3629	9.673454	ACGGTTTAAGAGCAGTTTTAAATTTAG	57.327	29.630	0.00	0.00	33.02	1.85
3088	3677	8.429739	TCGAATTTTTAGCAATTTTCGTACTG	57.570	30.769	0.00	0.00	37.71	2.74
3113	3704	7.275999	TGTTTTTATCCAGTTTTTGAACCGTTC	59.724	33.333	4.18	4.18	0.00	3.95
3143	3734	4.156214	CGTGTGATACGCCGTTGA	57.844	55.556	0.00	0.00	46.92	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
167	168	6.426327	GGAAACAACAACACAATTAAATGGC	58.574	36.000	0.00	0.00	0.00	4.40
1082	1101	9.653287	CTACAACTGGTGATTAGAAGATTACAA	57.347	33.333	0.00	0.00	0.00	2.41
1113	1132	7.158099	AGCCAAGTTTATAAAGACCAATGAC	57.842	36.000	0.00	0.00	0.00	3.06
1660	1682	8.352201	GGCATATCTTGTGATAATAAGTTGCAA	58.648	33.333	0.00	0.00	38.50	4.08
1730	1752	1.089920	GTGCACCATCGAGCAATTCT	58.910	50.000	5.22	0.00	43.20	2.40
1766	1788	5.822132	AGCTATCTAAGATTGCACCTGAT	57.178	39.130	0.00	0.00	0.00	2.90
1792	1815	0.320596	AGCACTGTCTTCAGCAGCTC	60.321	55.000	0.00	0.00	46.10	4.09
1795	1818	0.603172	AGCAGCACTGTCTTCAGCAG	60.603	55.000	0.00	0.00	44.77	4.24
1836	1859	9.158233	CCTCATTTCTTTGTCATATGCATTTTT	57.842	29.630	3.54	0.00	0.00	1.94
1849	1872	4.351111	AGTGGTAGTCCCTCATTTCTTTGT	59.649	41.667	0.00	0.00	0.00	2.83
2136	2159	0.179032	TTTCTGGTTGCTTCGAGCCA	60.179	50.000	4.73	0.00	41.51	4.75
2138	2161	3.003480	ACTATTTCTGGTTGCTTCGAGC	58.997	45.455	0.58	0.58	42.82	5.03
2186	2209	3.151554	AGCACAGAAGCATGATGTTCAA	58.848	40.909	0.00	0.00	36.85	2.69
2193	2216	6.172630	TGATTTAGTAAGCACAGAAGCATGA	58.827	36.000	0.00	0.00	36.85	3.07
2219	2242	3.929610	GCCTGACTTAGTAAGCACAGAAG	59.070	47.826	25.85	16.91	37.97	2.85
2220	2243	3.323691	TGCCTGACTTAGTAAGCACAGAA	59.676	43.478	25.85	16.71	37.97	3.02
2221	2244	2.897326	TGCCTGACTTAGTAAGCACAGA	59.103	45.455	25.85	13.14	37.97	3.41
2222	2245	3.319137	TGCCTGACTTAGTAAGCACAG	57.681	47.619	21.09	21.09	36.59	3.66
2225	2248	2.257207	AGGTGCCTGACTTAGTAAGCA	58.743	47.619	9.92	8.07	0.00	3.91
2226	2249	3.336138	AAGGTGCCTGACTTAGTAAGC	57.664	47.619	9.92	3.91	0.00	3.09
2227	2250	5.063880	ACAAAAGGTGCCTGACTTAGTAAG	58.936	41.667	8.41	8.41	0.00	2.34
2228	2251	5.043737	ACAAAAGGTGCCTGACTTAGTAA	57.956	39.130	0.00	0.00	0.00	2.24
2229	2252	4.699925	ACAAAAGGTGCCTGACTTAGTA	57.300	40.909	0.00	0.00	0.00	1.82
2230	2253	3.577805	ACAAAAGGTGCCTGACTTAGT	57.422	42.857	0.00	0.00	0.00	2.24
2231	2254	4.554723	CGAAACAAAAGGTGCCTGACTTAG	60.555	45.833	0.00	0.00	0.00	2.18
2232	2255	3.314080	CGAAACAAAAGGTGCCTGACTTA	59.686	43.478	0.00	0.00	0.00	2.24
2233	2256	2.099098	CGAAACAAAAGGTGCCTGACTT	59.901	45.455	0.00	0.00	0.00	3.01
2234	2257	1.676006	CGAAACAAAAGGTGCCTGACT	59.324	47.619	0.00	0.00	0.00	3.41
2235	2258	1.404035	ACGAAACAAAAGGTGCCTGAC	59.596	47.619	0.00	0.00	0.00	3.51
2236	2259	1.757682	ACGAAACAAAAGGTGCCTGA	58.242	45.000	0.00	0.00	0.00	3.86
2237	2260	3.666902	CGATACGAAACAAAAGGTGCCTG	60.667	47.826	0.00	0.00	0.00	4.85
2238	2261	2.482721	CGATACGAAACAAAAGGTGCCT	59.517	45.455	0.00	0.00	0.00	4.75
2239	2262	2.481185	TCGATACGAAACAAAAGGTGCC	59.519	45.455	0.00	0.00	31.06	5.01
2290	2355	4.051922	CGTACACATATCTTCCTTGGAGC	58.948	47.826	0.00	0.00	0.00	4.70
2298	2363	7.988904	AAGACTAAAGCGTACACATATCTTC	57.011	36.000	0.00	0.00	0.00	2.87
2376	2441	9.074576	TCTGAGTACAGAGATAACAACAAAGTA	57.925	33.333	0.00	0.00	46.55	2.24
2663	3250	2.863401	ATATTGCAGTGCTCGTCGTA	57.137	45.000	17.60	0.90	0.00	3.43
2952	3541	5.473931	CCTCGACGATATCTTTCCAATGAT	58.526	41.667	0.00	0.00	0.00	2.45
2953	3542	4.796290	GCCTCGACGATATCTTTCCAATGA	60.796	45.833	0.00	0.00	0.00	2.57
2961	3550	0.598562	ATGCGCCTCGACGATATCTT	59.401	50.000	4.18	0.00	34.06	2.40
3064	3653	8.211198	ACAGTACGAAAATTGCTAAAAATTCG	57.789	30.769	4.39	4.39	40.45	3.34
3073	3662	7.653647	TGGATAAAAACAGTACGAAAATTGCT	58.346	30.769	0.00	0.00	0.00	3.91
3084	3673	7.916450	CGGTTCAAAAACTGGATAAAAACAGTA	59.084	33.333	0.00	0.00	46.49	2.74
3086	3675	6.754675	ACGGTTCAAAAACTGGATAAAAACAG	59.245	34.615	2.51	0.00	44.63	3.16
3088	3677	7.275999	TGAACGGTTCAAAAACTGGATAAAAAC	59.724	33.333	20.52	0.00	44.63	2.43
3093	3684	5.106869	CGATGAACGGTTCAAAAACTGGATA	60.107	40.000	25.64	0.00	44.63	2.59
3094	3685	4.320202	CGATGAACGGTTCAAAAACTGGAT	60.320	41.667	25.64	7.53	44.63	3.41
3113	3704	1.154672	CACACGCCACGTTTCGATG	60.155	57.895	12.43	9.25	38.32	3.84
3143	3734	0.811281	GCGCCTTGTCCATAGCTTTT	59.189	50.000	0.00	0.00	0.00	2.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.