Multiple sequence alignment - TraesCS6B01G138600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G138600 chr6B 100.000 2721 0 0 1 2721 135941193 135943913 0.000000e+00 5025.0
1 TraesCS6B01G138600 chr6D 88.831 1916 112 50 828 2720 62229413 62231249 0.000000e+00 2259.0
2 TraesCS6B01G138600 chr6D 88.000 250 28 2 262 510 62228832 62229080 7.370000e-76 294.0
3 TraesCS6B01G138600 chr6D 90.541 74 5 1 734 807 62229275 62229346 2.230000e-16 97.1
4 TraesCS6B01G138600 chr6A 85.505 1090 81 37 969 2011 79404493 79405552 0.000000e+00 1066.0
5 TraesCS6B01G138600 chr6A 89.368 696 68 5 2032 2721 79408297 79408992 0.000000e+00 870.0
6 TraesCS6B01G138600 chr6A 90.519 443 18 12 1 443 79404030 79404448 5.090000e-157 564.0
7 TraesCS6B01G138600 chr6A 80.342 585 74 24 1013 1566 461434023 461433449 3.260000e-109 405.0
8 TraesCS6B01G138600 chr6A 85.650 223 22 5 265 478 79323003 79323224 2.730000e-55 226.0
9 TraesCS6B01G138600 chr6A 88.690 168 11 5 722 888 79323390 79323550 5.940000e-47 198.0
10 TraesCS6B01G138600 chr5D 82.832 565 74 11 1025 1567 482854053 482854616 4.070000e-133 484.0
11 TraesCS6B01G138600 chr5A 87.774 319 33 5 1025 1337 602489101 602489419 4.280000e-98 368.0
12 TraesCS6B01G138600 chr5B 87.697 317 33 3 1025 1335 592791849 592792165 5.540000e-97 364.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G138600 chr6B 135941193 135943913 2720 False 5025.000000 5025 100.000 1 2721 1 chr6B.!!$F1 2720
1 TraesCS6B01G138600 chr6D 62228832 62231249 2417 False 883.366667 2259 89.124 262 2720 3 chr6D.!!$F1 2458
2 TraesCS6B01G138600 chr6A 79404030 79408992 4962 False 833.333333 1066 88.464 1 2721 3 chr6A.!!$F2 2720
3 TraesCS6B01G138600 chr6A 461433449 461434023 574 True 405.000000 405 80.342 1013 1566 1 chr6A.!!$R1 553
4 TraesCS6B01G138600 chr6A 79323003 79323550 547 False 212.000000 226 87.170 265 888 2 chr6A.!!$F1 623
5 TraesCS6B01G138600 chr5D 482854053 482854616 563 False 484.000000 484 82.832 1025 1567 1 chr5D.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1090 0.112412 TCCAAAACTCCCAGCCTTCC 59.888 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 1968 0.031857 CAATTCGCAAACTGGCCACA 59.968 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.871427 GCATCGACATTCCGACGGC 61.871 63.158 9.66 0.00 41.70 5.68
54 55 1.542767 CGATACTCCTCGAGGTAGGCA 60.543 57.143 30.17 17.26 41.12 4.75
181 182 9.722056 CAACATAATTAAGTAAGATTCCAGCAC 57.278 33.333 0.00 0.00 0.00 4.40
205 206 3.214328 ACGAACAAAGGAAGAAGCATGT 58.786 40.909 0.00 0.00 0.00 3.21
206 207 3.632145 ACGAACAAAGGAAGAAGCATGTT 59.368 39.130 0.00 0.00 34.01 2.71
207 208 4.819630 ACGAACAAAGGAAGAAGCATGTTA 59.180 37.500 0.00 0.00 31.68 2.41
208 209 5.147162 CGAACAAAGGAAGAAGCATGTTAC 58.853 41.667 0.00 0.00 31.68 2.50
209 210 5.049405 CGAACAAAGGAAGAAGCATGTTACT 60.049 40.000 0.00 0.00 31.68 2.24
210 211 5.695851 ACAAAGGAAGAAGCATGTTACTG 57.304 39.130 0.00 0.00 0.00 2.74
211 212 5.133221 ACAAAGGAAGAAGCATGTTACTGT 58.867 37.500 0.00 0.00 0.00 3.55
212 213 6.296026 ACAAAGGAAGAAGCATGTTACTGTA 58.704 36.000 0.00 0.00 0.00 2.74
213 214 6.428159 ACAAAGGAAGAAGCATGTTACTGTAG 59.572 38.462 0.00 0.00 0.00 2.74
214 215 6.360370 AAGGAAGAAGCATGTTACTGTAGA 57.640 37.500 0.00 0.00 0.00 2.59
215 216 6.552445 AGGAAGAAGCATGTTACTGTAGAT 57.448 37.500 0.00 0.00 0.00 1.98
216 217 6.344500 AGGAAGAAGCATGTTACTGTAGATG 58.656 40.000 0.00 5.12 0.00 2.90
217 218 5.525378 GGAAGAAGCATGTTACTGTAGATGG 59.475 44.000 0.00 0.00 0.00 3.51
218 219 4.446371 AGAAGCATGTTACTGTAGATGGC 58.554 43.478 0.00 4.20 0.00 4.40
219 220 3.912496 AGCATGTTACTGTAGATGGCA 57.088 42.857 0.00 0.00 0.00 4.92
220 221 4.220693 AGCATGTTACTGTAGATGGCAA 57.779 40.909 0.00 0.00 0.00 4.52
221 222 4.785301 AGCATGTTACTGTAGATGGCAAT 58.215 39.130 0.00 0.00 0.00 3.56
222 223 4.577693 AGCATGTTACTGTAGATGGCAATG 59.422 41.667 0.00 0.00 0.00 2.82
223 224 4.790766 GCATGTTACTGTAGATGGCAATGC 60.791 45.833 0.00 0.00 0.00 3.56
224 225 3.949132 TGTTACTGTAGATGGCAATGCA 58.051 40.909 7.79 0.00 0.00 3.96
225 226 4.331108 TGTTACTGTAGATGGCAATGCAA 58.669 39.130 7.79 0.00 0.00 4.08
226 227 4.395854 TGTTACTGTAGATGGCAATGCAAG 59.604 41.667 7.79 0.00 0.00 4.01
227 228 1.747355 ACTGTAGATGGCAATGCAAGC 59.253 47.619 7.79 0.00 0.00 4.01
228 229 1.746787 CTGTAGATGGCAATGCAAGCA 59.253 47.619 7.79 0.00 0.00 3.91
229 230 2.164827 CTGTAGATGGCAATGCAAGCAA 59.835 45.455 7.79 5.50 0.00 3.91
230 231 2.761767 TGTAGATGGCAATGCAAGCAAT 59.238 40.909 7.79 10.06 0.00 3.56
231 232 2.309528 AGATGGCAATGCAAGCAATG 57.690 45.000 7.79 5.76 0.00 2.82
232 233 1.134521 AGATGGCAATGCAAGCAATGG 60.135 47.619 7.79 0.19 0.00 3.16
233 234 0.906066 ATGGCAATGCAAGCAATGGA 59.094 45.000 7.79 0.00 0.00 3.41
234 235 0.906066 TGGCAATGCAAGCAATGGAT 59.094 45.000 7.79 0.00 42.62 3.41
235 236 1.295792 GGCAATGCAAGCAATGGATG 58.704 50.000 7.79 2.46 39.46 3.51
248 249 2.564062 CAATGGATGCTGGAGTTTGGTT 59.436 45.455 0.00 0.00 0.00 3.67
250 251 1.177401 GGATGCTGGAGTTTGGTTCC 58.823 55.000 0.00 0.00 35.20 3.62
263 271 6.154706 GGAGTTTGGTTCCTAGATAGAGTTGA 59.845 42.308 0.00 0.00 0.00 3.18
289 297 1.521423 GGTACTTGACGATATGTGCGC 59.479 52.381 0.00 0.00 0.00 6.09
428 444 2.048127 GTCCTCGAAACGCCTGCT 60.048 61.111 0.00 0.00 0.00 4.24
503 519 1.537397 AGCTGAAGGGGTGCTCTGA 60.537 57.895 0.00 0.00 0.00 3.27
510 526 2.512515 GGGTGCTCTGATCGTGCC 60.513 66.667 8.41 0.00 0.00 5.01
511 527 2.512515 GGTGCTCTGATCGTGCCC 60.513 66.667 8.41 6.38 0.00 5.36
512 528 2.512515 GTGCTCTGATCGTGCCCC 60.513 66.667 8.41 0.00 0.00 5.80
513 529 3.002583 TGCTCTGATCGTGCCCCA 61.003 61.111 8.41 0.00 0.00 4.96
514 530 2.202987 GCTCTGATCGTGCCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
515 531 2.202987 CTCTGATCGTGCCCCAGC 60.203 66.667 0.00 0.00 40.48 4.85
516 532 3.746949 CTCTGATCGTGCCCCAGCC 62.747 68.421 0.00 0.00 38.69 4.85
528 544 2.359975 CCAGCCGGGTCCAAACTC 60.360 66.667 1.27 0.00 0.00 3.01
534 550 0.179001 CCGGGTCCAAACTCCAAAGT 60.179 55.000 0.00 0.00 37.32 2.66
546 563 2.472934 CAAAGTTACGGCGTCGCC 59.527 61.111 26.69 26.69 46.75 5.54
561 578 2.433318 GCCGACAGAGCAGTCACC 60.433 66.667 5.10 0.00 38.43 4.02
562 579 3.051210 CCGACAGAGCAGTCACCA 58.949 61.111 5.10 0.00 38.43 4.17
563 580 1.367471 CCGACAGAGCAGTCACCAA 59.633 57.895 5.10 0.00 38.43 3.67
564 581 0.668706 CCGACAGAGCAGTCACCAAG 60.669 60.000 5.10 0.00 38.43 3.61
565 582 0.668706 CGACAGAGCAGTCACCAAGG 60.669 60.000 5.10 0.00 38.43 3.61
566 583 0.681733 GACAGAGCAGTCACCAAGGA 59.318 55.000 0.00 0.00 38.40 3.36
567 584 0.394565 ACAGAGCAGTCACCAAGGAC 59.605 55.000 0.00 0.00 38.08 3.85
568 585 0.668706 CAGAGCAGTCACCAAGGACG 60.669 60.000 0.00 0.00 42.62 4.79
569 586 1.374758 GAGCAGTCACCAAGGACGG 60.375 63.158 0.00 0.00 42.62 4.79
570 587 1.816863 GAGCAGTCACCAAGGACGGA 61.817 60.000 0.00 0.00 42.62 4.69
571 588 1.374758 GCAGTCACCAAGGACGGAG 60.375 63.158 0.00 0.00 42.62 4.63
572 589 1.816863 GCAGTCACCAAGGACGGAGA 61.817 60.000 0.00 0.00 42.62 3.71
573 590 0.898320 CAGTCACCAAGGACGGAGAT 59.102 55.000 0.00 0.00 42.62 2.75
574 591 1.134965 CAGTCACCAAGGACGGAGATC 60.135 57.143 0.00 0.00 42.62 2.75
575 592 0.895530 GTCACCAAGGACGGAGATCA 59.104 55.000 0.00 0.00 0.00 2.92
576 593 0.895530 TCACCAAGGACGGAGATCAC 59.104 55.000 0.00 0.00 0.00 3.06
586 603 2.725008 GAGATCACGGCCGGAGAG 59.275 66.667 31.76 16.23 0.00 3.20
587 604 2.835431 AGATCACGGCCGGAGAGG 60.835 66.667 31.76 13.21 44.97 3.69
596 613 2.203308 CCGGAGAGGCGGCTAGTA 60.203 66.667 13.24 0.00 0.00 1.82
597 614 2.553727 CCGGAGAGGCGGCTAGTAC 61.554 68.421 13.24 1.51 0.00 2.73
598 615 1.526455 CGGAGAGGCGGCTAGTACT 60.526 63.158 13.24 4.13 0.00 2.73
599 616 0.250209 CGGAGAGGCGGCTAGTACTA 60.250 60.000 13.24 1.89 0.00 1.82
600 617 1.237533 GGAGAGGCGGCTAGTACTAC 58.762 60.000 13.24 0.73 0.00 2.73
601 618 1.202794 GGAGAGGCGGCTAGTACTACT 60.203 57.143 13.24 1.87 0.00 2.57
602 619 2.574450 GAGAGGCGGCTAGTACTACTT 58.426 52.381 13.24 0.00 0.00 2.24
603 620 2.950975 GAGAGGCGGCTAGTACTACTTT 59.049 50.000 13.24 0.00 0.00 2.66
604 621 4.133078 GAGAGGCGGCTAGTACTACTTTA 58.867 47.826 13.24 0.00 0.00 1.85
605 622 3.882288 AGAGGCGGCTAGTACTACTTTAC 59.118 47.826 13.24 0.00 0.00 2.01
606 623 3.882288 GAGGCGGCTAGTACTACTTTACT 59.118 47.826 13.24 0.00 36.28 2.24
607 624 5.041191 AGGCGGCTAGTACTACTTTACTA 57.959 43.478 11.03 0.00 34.10 1.82
608 625 5.629125 AGGCGGCTAGTACTACTTTACTAT 58.371 41.667 11.03 0.00 34.68 2.12
609 626 6.773638 AGGCGGCTAGTACTACTTTACTATA 58.226 40.000 11.03 0.00 34.68 1.31
610 627 6.652900 AGGCGGCTAGTACTACTTTACTATAC 59.347 42.308 11.03 0.00 34.68 1.47
611 628 6.652900 GGCGGCTAGTACTACTTTACTATACT 59.347 42.308 0.00 0.00 34.68 2.12
612 629 7.819900 GGCGGCTAGTACTACTTTACTATACTA 59.180 40.741 0.00 0.00 34.68 1.82
613 630 9.377312 GCGGCTAGTACTACTTTACTATACTAT 57.623 37.037 0.00 0.00 34.68 2.12
622 639 9.624697 ACTACTTTACTATACTATCTCGTCTCG 57.375 37.037 0.00 0.00 0.00 4.04
628 645 0.931702 ACTATCTCGTCTCGTCTGCG 59.068 55.000 0.00 0.00 39.92 5.18
631 648 4.180946 CTCGTCTCGTCTGCGGGG 62.181 72.222 0.00 0.00 39.48 5.73
635 652 3.838271 TCTCGTCTGCGGGGATGC 61.838 66.667 0.00 0.00 39.48 3.91
638 655 2.745884 CGTCTGCGGGGATGCAAA 60.746 61.111 0.00 0.00 45.74 3.68
665 682 0.232303 GCAGTCGAGTTTGTTGGACG 59.768 55.000 0.00 0.00 34.68 4.79
679 696 3.115892 GACGTGCCGCGGAAATCA 61.116 61.111 33.48 15.18 46.52 2.57
681 698 2.813474 CGTGCCGCGGAAATCAGA 60.813 61.111 33.48 0.00 36.85 3.27
682 699 2.785258 GTGCCGCGGAAATCAGAC 59.215 61.111 33.48 9.04 0.00 3.51
683 700 2.435938 TGCCGCGGAAATCAGACC 60.436 61.111 33.48 8.18 0.00 3.85
684 701 2.125106 GCCGCGGAAATCAGACCT 60.125 61.111 33.48 0.00 0.00 3.85
694 711 3.083349 TCAGACCTGATGCGGGGG 61.083 66.667 0.00 0.00 34.14 5.40
695 712 3.083349 CAGACCTGATGCGGGGGA 61.083 66.667 0.00 0.00 33.40 4.81
696 713 2.765807 AGACCTGATGCGGGGGAG 60.766 66.667 0.00 0.00 33.40 4.30
697 714 3.866582 GACCTGATGCGGGGGAGG 61.867 72.222 0.00 0.00 33.40 4.30
702 754 4.880426 GATGCGGGGGAGGGGAGA 62.880 72.222 0.00 0.00 0.00 3.71
703 755 4.431524 ATGCGGGGGAGGGGAGAA 62.432 66.667 0.00 0.00 0.00 2.87
793 853 9.971922 AAAATCTGGTCAAATCAGTCTTAAAAG 57.028 29.630 0.00 0.00 34.15 2.27
822 884 5.127031 TCTTGAATCATCACCACGATCAGTA 59.873 40.000 0.00 0.00 34.61 2.74
841 947 3.822192 CGAGGCATCGTCGTCCCA 61.822 66.667 13.51 0.00 44.09 4.37
849 959 0.465097 ATCGTCGTCCCATCCGTAGT 60.465 55.000 0.00 0.00 0.00 2.73
857 967 4.644234 TCGTCCCATCCGTAGTGTTAATTA 59.356 41.667 0.00 0.00 0.00 1.40
860 970 5.525012 GTCCCATCCGTAGTGTTAATTAACC 59.475 44.000 22.47 14.77 35.37 2.85
881 991 2.221055 CGAGACTTCTTGGGAAACAACG 59.779 50.000 0.00 0.00 34.76 4.10
888 998 0.747852 TTGGGAAACAACGGAAAGGC 59.252 50.000 0.00 0.00 33.18 4.35
897 1012 3.236047 ACAACGGAAAGGCCCTTAAAAT 58.764 40.909 0.00 0.00 0.00 1.82
929 1044 0.251742 CCCCAAAACCAGCAGATCCA 60.252 55.000 0.00 0.00 0.00 3.41
930 1045 0.890683 CCCAAAACCAGCAGATCCAC 59.109 55.000 0.00 0.00 0.00 4.02
932 1047 1.815003 CCAAAACCAGCAGATCCACTC 59.185 52.381 0.00 0.00 0.00 3.51
933 1048 1.815003 CAAAACCAGCAGATCCACTCC 59.185 52.381 0.00 0.00 0.00 3.85
934 1049 1.366319 AAACCAGCAGATCCACTCCT 58.634 50.000 0.00 0.00 0.00 3.69
935 1050 0.617413 AACCAGCAGATCCACTCCTG 59.383 55.000 0.00 0.00 0.00 3.86
936 1051 0.546267 ACCAGCAGATCCACTCCTGT 60.546 55.000 0.00 0.00 33.19 4.00
937 1052 0.177604 CCAGCAGATCCACTCCTGTC 59.822 60.000 0.00 0.00 33.19 3.51
938 1053 0.177604 CAGCAGATCCACTCCTGTCC 59.822 60.000 0.00 0.00 33.19 4.02
939 1054 1.142748 GCAGATCCACTCCTGTCCG 59.857 63.158 0.00 0.00 33.19 4.79
940 1055 1.819229 CAGATCCACTCCTGTCCGG 59.181 63.158 0.00 0.00 0.00 5.14
941 1056 0.972983 CAGATCCACTCCTGTCCGGT 60.973 60.000 0.00 0.00 0.00 5.28
942 1057 0.972983 AGATCCACTCCTGTCCGGTG 60.973 60.000 0.00 0.00 0.00 4.94
943 1058 0.970937 GATCCACTCCTGTCCGGTGA 60.971 60.000 0.00 0.00 33.32 4.02
944 1059 1.258445 ATCCACTCCTGTCCGGTGAC 61.258 60.000 0.00 0.00 42.12 3.67
945 1060 2.657237 CACTCCTGTCCGGTGACC 59.343 66.667 0.00 0.00 41.01 4.02
949 1064 3.706373 CCTGTCCGGTGACCCCTG 61.706 72.222 0.00 0.00 41.01 4.45
963 1078 2.820197 GACCCCTGTCATTCCAAAACTC 59.180 50.000 0.00 0.00 41.37 3.01
966 1081 2.490718 CCCTGTCATTCCAAAACTCCCA 60.491 50.000 0.00 0.00 0.00 4.37
972 1089 1.995376 TTCCAAAACTCCCAGCCTTC 58.005 50.000 0.00 0.00 0.00 3.46
973 1090 0.112412 TCCAAAACTCCCAGCCTTCC 59.888 55.000 0.00 0.00 0.00 3.46
974 1091 0.113190 CCAAAACTCCCAGCCTTCCT 59.887 55.000 0.00 0.00 0.00 3.36
975 1092 1.481242 CCAAAACTCCCAGCCTTCCTT 60.481 52.381 0.00 0.00 0.00 3.36
976 1093 2.319844 CAAAACTCCCAGCCTTCCTTT 58.680 47.619 0.00 0.00 0.00 3.11
1326 1450 2.037620 GCTCCGAGATGATGGTGGCT 62.038 60.000 0.00 0.00 0.00 4.75
1368 1507 2.646175 GCAGTCCGAGTGCCAGGTA 61.646 63.158 16.22 0.00 38.58 3.08
1501 1649 2.038975 CGGGGAGGAAGTGGAGGA 59.961 66.667 0.00 0.00 0.00 3.71
1580 1743 7.221452 CACATGCAGGTAATTAAATCTTCTTGC 59.779 37.037 2.51 0.00 0.00 4.01
1597 1760 7.913423 TCTTCTTGCGAAATTCTATGAAGATG 58.087 34.615 14.93 8.87 35.33 2.90
1601 1767 8.896744 TCTTGCGAAATTCTATGAAGATGATTT 58.103 29.630 0.00 0.00 28.97 2.17
1622 1788 8.010540 TGATTTTTGTTGCATCAAAATTGATCG 58.989 29.630 27.58 4.07 45.62 3.69
1623 1789 7.474398 TTTTTGTTGCATCAAAATTGATCGA 57.526 28.000 27.58 13.95 45.62 3.59
1705 1871 2.098831 GGCTACGTCTTGTTCCGGC 61.099 63.158 0.00 0.00 0.00 6.13
1706 1872 2.442188 GCTACGTCTTGTTCCGGCG 61.442 63.158 0.00 0.00 0.00 6.46
1707 1873 1.804326 CTACGTCTTGTTCCGGCGG 60.804 63.158 22.51 22.51 0.00 6.13
1726 1892 1.691196 GCTGCACCAATTAGGCCATA 58.309 50.000 5.01 0.00 43.14 2.74
1776 1944 4.399219 CTCAGATGCATGGAAGGATGATT 58.601 43.478 2.46 0.00 0.00 2.57
1783 1951 5.637127 TGCATGGAAGGATGATTATCATGT 58.363 37.500 12.89 0.00 37.20 3.21
1787 1955 7.591165 CATGGAAGGATGATTATCATGTTGTC 58.409 38.462 12.89 4.67 37.20 3.18
1789 1957 5.180117 GGAAGGATGATTATCATGTTGTCGG 59.820 44.000 12.89 0.00 37.20 4.79
1790 1958 4.645535 AGGATGATTATCATGTTGTCGGG 58.354 43.478 12.89 0.00 37.20 5.14
1791 1959 4.347876 AGGATGATTATCATGTTGTCGGGA 59.652 41.667 12.89 0.00 37.20 5.14
1796 1968 8.868522 ATGATTATCATGTTGTCGGGATATTT 57.131 30.769 6.93 0.00 35.43 1.40
1799 1971 5.756195 ATCATGTTGTCGGGATATTTGTG 57.244 39.130 0.00 0.00 0.00 3.33
1808 1980 2.159254 CGGGATATTTGTGGCCAGTTTG 60.159 50.000 5.11 0.00 0.00 2.93
1811 1983 1.610363 TATTTGTGGCCAGTTTGCGA 58.390 45.000 5.11 0.00 0.00 5.10
1826 1999 2.488204 TGCGAATTGGTTGAGGATGA 57.512 45.000 0.00 0.00 0.00 2.92
1912 2089 4.276678 TCGAGGAAATGAAATGATCCATGC 59.723 41.667 0.00 0.00 36.02 4.06
1926 2103 5.448654 TGATCCATGCTTTAGCCAGTTTAT 58.551 37.500 0.00 0.00 41.18 1.40
1996 2192 8.601845 ATGCGTTATAATGTTGTAGCTTATCA 57.398 30.769 6.55 0.00 0.00 2.15
2067 4987 7.327275 TCAAATGCAACAAACCGTATGTATTTC 59.673 33.333 0.00 0.00 36.42 2.17
2076 4996 8.836413 ACAAACCGTATGTATTTCCAATATCAG 58.164 33.333 0.00 0.00 0.00 2.90
2155 5075 4.250116 TGCAACCAATTCATGTACCAAC 57.750 40.909 0.00 0.00 0.00 3.77
2160 5080 2.227626 CCAATTCATGTACCAACGTGCA 59.772 45.455 0.00 0.00 41.59 4.57
2238 5158 9.950496 AAATCAAGTGAGATATATGGGATACAC 57.050 33.333 0.00 0.00 39.74 2.90
2314 5234 0.025001 CCTCTTCGCGCGTTGTATTG 59.975 55.000 30.98 13.76 0.00 1.90
2337 5257 2.811317 CTCCACACTTCGCCGCTC 60.811 66.667 0.00 0.00 0.00 5.03
2362 5282 5.555017 AGGAAGCACAATATGTAGCATAGG 58.445 41.667 0.00 0.00 30.52 2.57
2381 5301 0.872021 GCGTCGATCTGTCATGGTCC 60.872 60.000 0.00 0.00 0.00 4.46
2404 5324 3.551635 ACCTTTCTCTCCCTTCTCTCA 57.448 47.619 0.00 0.00 0.00 3.27
2407 5327 4.469586 ACCTTTCTCTCCCTTCTCTCATTC 59.530 45.833 0.00 0.00 0.00 2.67
2409 5329 3.374042 TCTCTCCCTTCTCTCATTCGT 57.626 47.619 0.00 0.00 0.00 3.85
2424 5344 1.811645 TTCGTCTGGTCGGTGATGCA 61.812 55.000 0.00 0.00 0.00 3.96
2468 5397 3.434167 GCTCACCACCAATCATGTATCCT 60.434 47.826 0.00 0.00 0.00 3.24
2487 5416 4.079970 TCCTACATAGCTAGATTGACCCG 58.920 47.826 0.00 0.00 0.00 5.28
2637 5568 5.902613 ACTTGCAGCAGCTTATTCAATAA 57.097 34.783 1.76 0.00 42.74 1.40
2640 5571 5.902613 TGCAGCAGCTTATTCAATAAAGT 57.097 34.783 1.76 0.00 42.74 2.66
2641 5572 6.271488 TGCAGCAGCTTATTCAATAAAGTT 57.729 33.333 1.76 0.00 42.74 2.66
2671 5602 5.122711 GGAATTACGCCTACAAGTAGCAAAA 59.877 40.000 1.69 0.00 31.95 2.44
2689 5620 7.218228 AGCAAAAGTCATTTATGATCACACA 57.782 32.000 0.00 0.00 39.30 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.158434 GCCTACCTCGAGGAGTATCG 58.842 60.000 37.69 17.75 44.07 2.92
54 55 4.806936 TCGTGGTCCGACTACAGT 57.193 55.556 14.61 0.00 41.60 3.55
87 88 2.042464 TGGGACAGACTGCTATCCATC 58.958 52.381 11.56 0.00 39.59 3.51
181 182 2.872245 TGCTTCTTCCTTTGTTCGTCAG 59.128 45.455 0.00 0.00 0.00 3.51
205 206 3.378112 GCTTGCATTGCCATCTACAGTAA 59.622 43.478 6.12 0.00 0.00 2.24
206 207 2.945008 GCTTGCATTGCCATCTACAGTA 59.055 45.455 6.12 0.00 0.00 2.74
207 208 1.747355 GCTTGCATTGCCATCTACAGT 59.253 47.619 6.12 0.00 0.00 3.55
208 209 1.746787 TGCTTGCATTGCCATCTACAG 59.253 47.619 6.12 0.00 0.00 2.74
209 210 1.836802 TGCTTGCATTGCCATCTACA 58.163 45.000 6.12 0.00 0.00 2.74
210 211 2.945447 TTGCTTGCATTGCCATCTAC 57.055 45.000 6.12 0.00 0.00 2.59
211 212 2.101750 CCATTGCTTGCATTGCCATCTA 59.898 45.455 6.12 0.00 0.00 1.98
212 213 1.134521 CCATTGCTTGCATTGCCATCT 60.135 47.619 6.12 0.00 0.00 2.90
213 214 1.134640 TCCATTGCTTGCATTGCCATC 60.135 47.619 6.12 0.00 0.00 3.51
214 215 0.906066 TCCATTGCTTGCATTGCCAT 59.094 45.000 6.12 2.09 0.00 4.40
215 216 0.906066 ATCCATTGCTTGCATTGCCA 59.094 45.000 6.12 0.00 0.00 4.92
216 217 1.295792 CATCCATTGCTTGCATTGCC 58.704 50.000 6.12 0.00 0.00 4.52
227 228 2.173519 ACCAAACTCCAGCATCCATTG 58.826 47.619 0.00 0.00 0.00 2.82
228 229 2.610438 ACCAAACTCCAGCATCCATT 57.390 45.000 0.00 0.00 0.00 3.16
229 230 2.450476 GAACCAAACTCCAGCATCCAT 58.550 47.619 0.00 0.00 0.00 3.41
230 231 1.547675 GGAACCAAACTCCAGCATCCA 60.548 52.381 0.00 0.00 32.77 3.41
231 232 1.177401 GGAACCAAACTCCAGCATCC 58.823 55.000 0.00 0.00 32.77 3.51
232 233 2.206576 AGGAACCAAACTCCAGCATC 57.793 50.000 0.00 0.00 35.20 3.91
233 234 2.912956 TCTAGGAACCAAACTCCAGCAT 59.087 45.455 0.00 0.00 35.20 3.79
234 235 2.334977 TCTAGGAACCAAACTCCAGCA 58.665 47.619 0.00 0.00 35.20 4.41
235 236 3.636153 ATCTAGGAACCAAACTCCAGC 57.364 47.619 0.00 0.00 35.20 4.85
236 237 5.659079 ACTCTATCTAGGAACCAAACTCCAG 59.341 44.000 0.00 0.00 35.20 3.86
248 249 5.529289 ACCATGGTTCAACTCTATCTAGGA 58.471 41.667 13.00 0.00 0.00 2.94
250 251 7.589958 AGTACCATGGTTCAACTCTATCTAG 57.410 40.000 25.38 0.00 0.00 2.43
263 271 5.116180 CACATATCGTCAAGTACCATGGTT 58.884 41.667 25.38 2.07 0.00 3.67
289 297 1.066573 AGTCACAAAGGAGATGCCGAG 60.067 52.381 0.00 0.00 43.43 4.63
428 444 0.755079 CGATCAGATGGAGGCCAAGA 59.245 55.000 5.01 0.00 36.95 3.02
485 501 0.913451 ATCAGAGCACCCCTTCAGCT 60.913 55.000 0.00 0.00 42.17 4.24
492 508 2.512515 GCACGATCAGAGCACCCC 60.513 66.667 0.00 0.00 36.42 4.95
511 527 2.359975 GAGTTTGGACCCGGCTGG 60.360 66.667 3.88 3.88 41.37 4.85
512 528 2.359975 GGAGTTTGGACCCGGCTG 60.360 66.667 0.00 0.00 0.00 4.85
513 529 2.002018 TTTGGAGTTTGGACCCGGCT 62.002 55.000 0.00 0.00 0.00 5.52
514 530 1.524008 CTTTGGAGTTTGGACCCGGC 61.524 60.000 0.00 0.00 0.00 6.13
515 531 0.179001 ACTTTGGAGTTTGGACCCGG 60.179 55.000 0.00 0.00 29.87 5.73
516 532 1.687563 AACTTTGGAGTTTGGACCCG 58.312 50.000 0.00 0.00 43.48 5.28
517 533 2.551032 CGTAACTTTGGAGTTTGGACCC 59.449 50.000 0.00 0.00 43.48 4.46
519 535 2.031420 GCCGTAACTTTGGAGTTTGGAC 60.031 50.000 11.90 0.00 43.48 4.02
523 539 1.869132 GACGCCGTAACTTTGGAGTTT 59.131 47.619 0.00 0.00 43.48 2.66
525 541 0.665369 CGACGCCGTAACTTTGGAGT 60.665 55.000 0.00 0.00 41.21 3.85
527 543 2.023223 GCGACGCCGTAACTTTGGA 61.023 57.895 9.14 0.00 38.24 3.53
528 544 2.472934 GCGACGCCGTAACTTTGG 59.527 61.111 9.14 0.00 38.24 3.28
546 563 0.668706 CCTTGGTGACTGCTCTGTCG 60.669 60.000 3.15 0.00 39.64 4.35
561 578 1.519455 GCCGTGATCTCCGTCCTTG 60.519 63.158 0.00 0.00 0.00 3.61
562 579 2.722201 GGCCGTGATCTCCGTCCTT 61.722 63.158 0.00 0.00 0.00 3.36
563 580 3.148279 GGCCGTGATCTCCGTCCT 61.148 66.667 0.00 0.00 0.00 3.85
564 581 4.570663 CGGCCGTGATCTCCGTCC 62.571 72.222 19.50 0.00 38.47 4.79
565 582 4.570663 CCGGCCGTGATCTCCGTC 62.571 72.222 26.12 0.00 41.46 4.79
567 584 4.271816 CTCCGGCCGTGATCTCCG 62.272 72.222 26.12 5.84 42.58 4.63
568 585 2.833582 TCTCCGGCCGTGATCTCC 60.834 66.667 26.12 0.00 0.00 3.71
569 586 2.725008 CTCTCCGGCCGTGATCTC 59.275 66.667 26.12 0.00 0.00 2.75
570 587 2.835431 CCTCTCCGGCCGTGATCT 60.835 66.667 26.12 0.00 0.00 2.75
586 603 5.956068 ATAGTAAAGTAGTACTAGCCGCC 57.044 43.478 1.87 0.00 39.37 6.13
587 604 7.665561 AGTATAGTAAAGTAGTACTAGCCGC 57.334 40.000 1.87 0.00 39.37 6.53
596 613 9.624697 CGAGACGAGATAGTATAGTAAAGTAGT 57.375 37.037 0.00 0.00 0.00 2.73
597 614 9.624697 ACGAGACGAGATAGTATAGTAAAGTAG 57.375 37.037 0.00 0.00 0.00 2.57
598 615 9.619316 GACGAGACGAGATAGTATAGTAAAGTA 57.381 37.037 0.00 0.00 0.00 2.24
599 616 8.359642 AGACGAGACGAGATAGTATAGTAAAGT 58.640 37.037 0.00 0.00 0.00 2.66
600 617 8.641155 CAGACGAGACGAGATAGTATAGTAAAG 58.359 40.741 0.00 0.00 0.00 1.85
601 618 7.116090 GCAGACGAGACGAGATAGTATAGTAAA 59.884 40.741 0.00 0.00 0.00 2.01
602 619 6.585702 GCAGACGAGACGAGATAGTATAGTAA 59.414 42.308 0.00 0.00 0.00 2.24
603 620 6.092092 GCAGACGAGACGAGATAGTATAGTA 58.908 44.000 0.00 0.00 0.00 1.82
604 621 4.925054 GCAGACGAGACGAGATAGTATAGT 59.075 45.833 0.00 0.00 0.00 2.12
605 622 4.030865 CGCAGACGAGACGAGATAGTATAG 59.969 50.000 0.00 0.00 43.93 1.31
606 623 3.919197 CGCAGACGAGACGAGATAGTATA 59.081 47.826 0.00 0.00 43.93 1.47
607 624 2.732500 CGCAGACGAGACGAGATAGTAT 59.267 50.000 0.00 0.00 43.93 2.12
608 625 2.125685 CGCAGACGAGACGAGATAGTA 58.874 52.381 0.00 0.00 43.93 1.82
609 626 0.931702 CGCAGACGAGACGAGATAGT 59.068 55.000 0.00 0.00 43.93 2.12
610 627 0.233590 CCGCAGACGAGACGAGATAG 59.766 60.000 0.00 0.00 43.93 2.08
611 628 1.158484 CCCGCAGACGAGACGAGATA 61.158 60.000 0.00 0.00 43.93 1.98
612 629 2.473760 CCCGCAGACGAGACGAGAT 61.474 63.158 0.00 0.00 43.93 2.75
613 630 3.125573 CCCGCAGACGAGACGAGA 61.126 66.667 0.00 0.00 43.93 4.04
614 631 4.180946 CCCCGCAGACGAGACGAG 62.181 72.222 0.00 0.00 43.93 4.18
615 632 3.989838 ATCCCCGCAGACGAGACGA 62.990 63.158 0.00 0.00 43.93 4.20
616 633 3.518998 ATCCCCGCAGACGAGACG 61.519 66.667 0.00 0.00 43.93 4.18
617 634 2.105128 CATCCCCGCAGACGAGAC 59.895 66.667 0.00 0.00 43.93 3.36
618 635 3.838271 GCATCCCCGCAGACGAGA 61.838 66.667 0.00 0.00 43.93 4.04
619 636 3.664025 TTGCATCCCCGCAGACGAG 62.664 63.158 0.00 0.00 44.14 4.18
622 639 2.409870 CCTTTGCATCCCCGCAGAC 61.410 63.158 0.00 0.00 44.14 3.51
635 652 2.202388 CGACTGCATGCGCCTTTG 60.202 61.111 14.09 0.60 37.32 2.77
638 655 3.596066 AACTCGACTGCATGCGCCT 62.596 57.895 14.09 0.00 37.32 5.52
665 682 2.750888 GGTCTGATTTCCGCGGCAC 61.751 63.158 23.51 11.84 0.00 5.01
679 696 2.765807 CTCCCCCGCATCAGGTCT 60.766 66.667 0.00 0.00 0.00 3.85
709 761 4.867599 CTCGCTACCCGTTCGGCC 62.868 72.222 5.66 0.00 38.35 6.13
719 771 0.720027 GCTTCGTTTTCCCTCGCTAC 59.280 55.000 0.00 0.00 0.00 3.58
723 775 0.796927 GAAGGCTTCGTTTTCCCTCG 59.203 55.000 12.12 0.00 0.00 4.63
761 821 7.286316 AGACTGATTTGACCAGATTTTGACTTT 59.714 33.333 0.00 0.00 35.69 2.66
762 822 6.774656 AGACTGATTTGACCAGATTTTGACTT 59.225 34.615 0.00 0.00 35.69 3.01
793 853 5.111989 TCGTGGTGATGATTCAAGAAGATC 58.888 41.667 0.00 0.00 32.48 2.75
841 947 6.096001 AGTCTCGGTTAATTAACACTACGGAT 59.904 38.462 25.59 5.75 37.92 4.18
849 959 5.935789 CCCAAGAAGTCTCGGTTAATTAACA 59.064 40.000 25.59 8.99 37.92 2.41
857 967 2.171870 TGTTTCCCAAGAAGTCTCGGTT 59.828 45.455 0.00 0.00 32.35 4.44
860 970 2.221055 CGTTGTTTCCCAAGAAGTCTCG 59.779 50.000 0.00 0.00 32.51 4.04
881 991 2.500098 GTGGGATTTTAAGGGCCTTTCC 59.500 50.000 26.29 23.53 0.00 3.13
888 998 4.954202 GGGTTTAGAGTGGGATTTTAAGGG 59.046 45.833 0.00 0.00 0.00 3.95
897 1012 1.835895 TTTGGGGGTTTAGAGTGGGA 58.164 50.000 0.00 0.00 0.00 4.37
929 1044 2.603776 GGGTCACCGGACAGGAGT 60.604 66.667 9.46 0.00 46.17 3.85
930 1045 3.391382 GGGGTCACCGGACAGGAG 61.391 72.222 9.46 0.00 46.17 3.69
932 1047 3.706373 CAGGGGTCACCGGACAGG 61.706 72.222 9.46 0.00 46.17 4.00
933 1048 2.923035 ACAGGGGTCACCGGACAG 60.923 66.667 9.46 0.00 46.17 3.51
934 1049 2.920912 GACAGGGGTCACCGGACA 60.921 66.667 9.46 0.00 46.17 4.02
942 1057 2.820197 GAGTTTTGGAATGACAGGGGTC 59.180 50.000 0.00 0.00 44.57 4.46
943 1058 2.490902 GGAGTTTTGGAATGACAGGGGT 60.491 50.000 0.00 0.00 0.00 4.95
944 1059 2.171003 GGAGTTTTGGAATGACAGGGG 58.829 52.381 0.00 0.00 0.00 4.79
945 1060 2.171003 GGGAGTTTTGGAATGACAGGG 58.829 52.381 0.00 0.00 0.00 4.45
949 1064 1.546029 GGCTGGGAGTTTTGGAATGAC 59.454 52.381 0.00 0.00 0.00 3.06
963 1078 0.323816 GGAAGGAAAGGAAGGCTGGG 60.324 60.000 0.00 0.00 0.00 4.45
966 1081 0.995803 GAGGGAAGGAAAGGAAGGCT 59.004 55.000 0.00 0.00 0.00 4.58
972 1089 1.074566 AGCTGTTGAGGGAAGGAAAGG 59.925 52.381 0.00 0.00 0.00 3.11
973 1090 2.431454 GAGCTGTTGAGGGAAGGAAAG 58.569 52.381 0.00 0.00 0.00 2.62
974 1091 1.270839 CGAGCTGTTGAGGGAAGGAAA 60.271 52.381 0.00 0.00 0.00 3.13
975 1092 0.321671 CGAGCTGTTGAGGGAAGGAA 59.678 55.000 0.00 0.00 0.00 3.36
976 1093 1.975327 CGAGCTGTTGAGGGAAGGA 59.025 57.895 0.00 0.00 0.00 3.36
1368 1507 2.749044 CAGAACAGCCGCCTGCAT 60.749 61.111 0.00 0.00 43.02 3.96
1501 1649 1.999634 AACTGGCACTTGGAGCACCT 62.000 55.000 0.71 0.00 37.04 4.00
1622 1788 6.872920 TGCCAATTAATTTTACCACCATCTC 58.127 36.000 0.00 0.00 0.00 2.75
1623 1789 6.127083 CCTGCCAATTAATTTTACCACCATCT 60.127 38.462 0.00 0.00 0.00 2.90
1705 1871 2.774799 GGCCTAATTGGTGCAGCCG 61.775 63.158 14.36 0.00 41.21 5.52
1706 1872 1.044790 ATGGCCTAATTGGTGCAGCC 61.045 55.000 14.36 7.97 40.87 4.85
1707 1873 1.691196 TATGGCCTAATTGGTGCAGC 58.309 50.000 9.47 9.47 38.35 5.25
1776 1944 5.762711 CCACAAATATCCCGACAACATGATA 59.237 40.000 0.00 0.00 0.00 2.15
1783 1951 1.004862 TGGCCACAAATATCCCGACAA 59.995 47.619 0.00 0.00 0.00 3.18
1787 1955 1.762708 AACTGGCCACAAATATCCCG 58.237 50.000 0.00 0.00 0.00 5.14
1789 1957 2.735126 CGCAAACTGGCCACAAATATCC 60.735 50.000 0.00 0.00 0.00 2.59
1790 1958 2.163412 TCGCAAACTGGCCACAAATATC 59.837 45.455 0.00 0.00 0.00 1.63
1791 1959 2.166829 TCGCAAACTGGCCACAAATAT 58.833 42.857 0.00 0.00 0.00 1.28
1796 1968 0.031857 CAATTCGCAAACTGGCCACA 59.968 50.000 0.00 0.00 0.00 4.17
1799 1971 0.033366 AACCAATTCGCAAACTGGCC 59.967 50.000 0.00 0.00 31.74 5.36
1808 1980 5.695851 AATATCATCCTCAACCAATTCGC 57.304 39.130 0.00 0.00 0.00 4.70
1811 1983 9.826574 CAATCAAAATATCATCCTCAACCAATT 57.173 29.630 0.00 0.00 0.00 2.32
1851 2024 8.605325 AATTAAGACCACCTCTTACTAGCTTA 57.395 34.615 0.00 0.00 40.59 3.09
1874 2051 4.371624 TCCTCGATCATGGCCAAATAAT 57.628 40.909 10.96 0.00 0.00 1.28
1875 2052 3.855255 TCCTCGATCATGGCCAAATAA 57.145 42.857 10.96 0.00 0.00 1.40
1876 2053 3.855255 TTCCTCGATCATGGCCAAATA 57.145 42.857 10.96 0.00 0.00 1.40
1877 2054 2.734755 TTCCTCGATCATGGCCAAAT 57.265 45.000 10.96 6.61 0.00 2.32
1912 2089 8.739972 ACTAACAAATCCATAAACTGGCTAAAG 58.260 33.333 0.00 0.00 45.52 1.85
1926 2103 5.121611 CACATAGCAACGACTAACAAATCCA 59.878 40.000 0.00 0.00 0.00 3.41
2011 4796 9.636789 TTGTATAGGTTAGTAGAGCTGACATAA 57.363 33.333 0.00 0.00 34.49 1.90
2042 4962 6.942886 AATACATACGGTTTGTTGCATTTG 57.057 33.333 9.45 0.00 0.00 2.32
2124 5044 7.613585 ACATGAATTGGTTGCAATATTCAAGA 58.386 30.769 26.16 13.46 39.59 3.02
2155 5075 7.491372 TCAAGAAACTAGATTATACCTTGCACG 59.509 37.037 0.00 0.00 32.30 5.34
2160 5080 9.379791 CCGTTTCAAGAAACTAGATTATACCTT 57.620 33.333 19.83 0.00 46.21 3.50
2215 5135 8.670521 ATGTGTATCCCATATATCTCACTTGA 57.329 34.615 0.00 0.00 0.00 3.02
2247 5167 5.659503 AGAGGATGGACCATGTACTATCAT 58.340 41.667 12.99 0.00 42.04 2.45
2250 5170 6.625267 AGTAAGAGGATGGACCATGTACTAT 58.375 40.000 12.99 1.71 42.04 2.12
2302 5222 0.385473 AGCAACACAATACAACGCGC 60.385 50.000 5.73 0.00 0.00 6.86
2337 5257 3.457234 TGCTACATATTGTGCTTCCTCG 58.543 45.455 0.00 0.00 0.00 4.63
2362 5282 0.872021 GGACCATGACAGATCGACGC 60.872 60.000 0.00 0.00 0.00 5.19
2364 5284 1.115467 AGGGACCATGACAGATCGAC 58.885 55.000 0.00 0.00 0.00 4.20
2381 5301 3.958147 GAGAGAAGGGAGAGAAAGGTAGG 59.042 52.174 0.00 0.00 0.00 3.18
2404 5324 0.460284 GCATCACCGACCAGACGAAT 60.460 55.000 0.00 0.00 35.09 3.34
2407 5327 2.094659 GTGCATCACCGACCAGACG 61.095 63.158 0.00 0.00 0.00 4.18
2409 5329 2.662596 GGTGCATCACCGACCAGA 59.337 61.111 0.00 0.00 44.95 3.86
2468 5397 3.572682 CACCGGGTCAATCTAGCTATGTA 59.427 47.826 6.32 0.00 0.00 2.29
2472 5401 1.063492 TCCACCGGGTCAATCTAGCTA 60.063 52.381 6.32 0.00 34.93 3.32
2473 5402 0.325296 TCCACCGGGTCAATCTAGCT 60.325 55.000 6.32 0.00 34.93 3.32
2475 5404 2.434336 TGATTCCACCGGGTCAATCTAG 59.566 50.000 21.07 1.77 31.70 2.43
2487 5416 2.646930 TGTCTCATGCATGATTCCACC 58.353 47.619 28.81 13.43 36.02 4.61
2546 5475 1.472376 CCAAATCCTCCTCGTCTGCTC 60.472 57.143 0.00 0.00 0.00 4.26
2637 5568 5.708230 TGTAGGCGTAATTCCATTTCAACTT 59.292 36.000 0.00 0.00 0.00 2.66
2640 5571 5.708230 ACTTGTAGGCGTAATTCCATTTCAA 59.292 36.000 0.00 0.00 0.00 2.69
2641 5572 5.250200 ACTTGTAGGCGTAATTCCATTTCA 58.750 37.500 0.00 0.00 0.00 2.69
2671 5602 5.569355 TGGGTTGTGTGATCATAAATGACT 58.431 37.500 0.00 0.00 40.03 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.