Multiple sequence alignment - TraesCS6B01G138300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G138300 chr6B 100.000 6244 0 0 1 6244 135841732 135847975 0.000000e+00 11531.0
1 TraesCS6B01G138300 chr6D 92.563 3496 142 52 1 3463 62104122 62107532 0.000000e+00 4907.0
2 TraesCS6B01G138300 chr6D 94.140 2321 74 29 3763 6044 62107946 62110243 0.000000e+00 3476.0
3 TraesCS6B01G138300 chr6D 91.798 317 19 6 3453 3766 62107561 62107873 9.610000e-118 435.0
4 TraesCS6B01G138300 chr6D 89.349 169 15 2 2395 2560 99041372 99041204 6.340000e-50 209.0
5 TraesCS6B01G138300 chr6D 94.262 122 7 0 6118 6239 62110240 62110361 2.970000e-43 187.0
6 TraesCS6B01G138300 chr6A 92.310 3173 150 47 641 3766 79259280 79262405 0.000000e+00 4421.0
7 TraesCS6B01G138300 chr6A 97.095 1790 39 6 3763 5539 79262460 79264249 0.000000e+00 3005.0
8 TraesCS6B01G138300 chr6A 91.183 431 22 6 5621 6044 79264285 79264706 7.020000e-159 571.0
9 TraesCS6B01G138300 chr6A 79.401 568 36 37 1 566 79258766 79259254 6.040000e-85 326.0
10 TraesCS6B01G138300 chr6A 90.833 120 9 2 6118 6236 79264703 79264821 6.480000e-35 159.0
11 TraesCS6B01G138300 chr5D 90.533 169 13 2 2395 2560 446626791 446626623 2.930000e-53 220.0
12 TraesCS6B01G138300 chr5D 91.139 79 2 1 6043 6121 286953672 286953745 1.110000e-17 102.0
13 TraesCS6B01G138300 chr5D 89.412 85 2 3 6040 6122 389438800 389438721 3.980000e-17 100.0
14 TraesCS6B01G138300 chr4D 89.941 169 14 2 2395 2560 22737946 22737778 1.360000e-51 215.0
15 TraesCS6B01G138300 chr4D 89.941 169 14 2 2395 2560 75934254 75934422 1.360000e-51 215.0
16 TraesCS6B01G138300 chr4D 90.303 165 13 2 2395 2556 439487278 439487442 4.900000e-51 213.0
17 TraesCS6B01G138300 chr1D 89.349 169 15 2 2395 2560 182245120 182245288 6.340000e-50 209.0
18 TraesCS6B01G138300 chr1D 89.349 169 15 2 2395 2560 394927540 394927708 6.340000e-50 209.0
19 TraesCS6B01G138300 chr5B 78.689 244 50 2 1112 1354 420984907 420984665 1.800000e-35 161.0
20 TraesCS6B01G138300 chr5A 78.992 238 48 2 1112 1348 457789097 457789333 1.800000e-35 161.0
21 TraesCS6B01G138300 chr5A 85.870 92 12 1 6031 6121 614040553 614040462 5.150000e-16 97.1
22 TraesCS6B01G138300 chr3D 91.139 79 2 1 6043 6121 120008692 120008619 1.110000e-17 102.0
23 TraesCS6B01G138300 chrUn 89.024 82 8 1 6041 6121 27556463 27556382 3.980000e-17 100.0
24 TraesCS6B01G138300 chr2D 89.024 82 8 1 6041 6121 76750385 76750466 3.980000e-17 100.0
25 TraesCS6B01G138300 chr2D 88.506 87 3 3 6037 6121 120560015 120560096 1.430000e-16 99.0
26 TraesCS6B01G138300 chr1A 89.873 79 2 2 6043 6121 286010018 286009946 5.150000e-16 97.1
27 TraesCS6B01G138300 chr7A 85.714 98 5 6 6031 6121 391911794 391911889 1.850000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G138300 chr6B 135841732 135847975 6243 False 11531.00 11531 100.00000 1 6244 1 chr6B.!!$F1 6243
1 TraesCS6B01G138300 chr6D 62104122 62110361 6239 False 2251.25 4907 93.19075 1 6239 4 chr6D.!!$F1 6238
2 TraesCS6B01G138300 chr6A 79258766 79264821 6055 False 1696.40 4421 90.16440 1 6236 5 chr6A.!!$F1 6235

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 324 0.105039 GAAATCTGGAGGCGACCGAT 59.895 55.000 0.00 3.39 0.00 4.18 F
777 785 0.253044 TCGGGGATTTGAGAGCCTTG 59.747 55.000 0.00 0.00 0.00 3.61 F
1167 1175 0.973632 ACACGGTGGTCAAGATGCTA 59.026 50.000 13.48 0.00 0.00 3.49 F
1637 1649 1.153958 GACCTGCTTCATTTGCGCC 60.154 57.895 4.18 0.00 0.00 6.53 F
3037 3074 1.004185 GCTCACAGCATGCATTACGAG 60.004 52.381 21.98 17.38 42.53 4.18 F
4319 4477 0.253327 AGCCTTCTGACGGGGATTTC 59.747 55.000 2.10 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 1619 0.251386 AGCAGGTCTCCAAGTCGAGA 60.251 55.000 0.00 0.0 36.53 4.04 R
2100 2119 1.668101 GAAGGAGGAGCGGACGACAT 61.668 60.000 0.00 0.0 0.00 3.06 R
2924 2961 3.005050 CACTGTCTTGTGCATGGTTTCAT 59.995 43.478 0.00 0.0 0.00 2.57 R
3617 3698 2.672098 ACCACTGCAAAACCACCAATA 58.328 42.857 0.00 0.0 0.00 1.90 R
4562 4720 0.105964 CCCCAATAACGATCGGCAGA 59.894 55.000 20.98 1.3 0.00 4.26 R
6110 6327 0.178068 CATGGTGGTTACTCCCTCCG 59.822 60.000 0.00 0.0 33.88 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 5.246883 TCTTTCTACTACCCTGTTTACCACC 59.753 44.000 0.00 0.00 0.00 4.61
90 91 0.978907 CTACCCTGTTTACCACCCGT 59.021 55.000 0.00 0.00 0.00 5.28
91 92 2.178580 CTACCCTGTTTACCACCCGTA 58.821 52.381 0.00 0.00 0.00 4.02
92 93 1.433121 ACCCTGTTTACCACCCGTAA 58.567 50.000 0.00 0.00 35.06 3.18
102 103 3.130280 ACCACCCGTAAAAGTAACCAG 57.870 47.619 0.00 0.00 0.00 4.00
123 124 5.003160 CAGAAAACCACCATCATGACAGTA 58.997 41.667 0.00 0.00 0.00 2.74
124 125 5.122869 CAGAAAACCACCATCATGACAGTAG 59.877 44.000 0.00 0.00 0.00 2.57
125 126 4.640771 AAACCACCATCATGACAGTAGT 57.359 40.909 0.00 0.00 0.00 2.73
126 127 3.616956 ACCACCATCATGACAGTAGTG 57.383 47.619 0.00 1.57 0.00 2.74
209 210 2.281484 TCCAACCTCCAAGCGTGC 60.281 61.111 0.00 0.00 0.00 5.34
234 238 2.337583 CGTGAATGCCGTATCCCATAG 58.662 52.381 0.00 0.00 0.00 2.23
237 241 2.076863 GAATGCCGTATCCCATAGCAC 58.923 52.381 0.00 0.00 36.06 4.40
239 243 1.128200 TGCCGTATCCCATAGCACTT 58.872 50.000 0.00 0.00 0.00 3.16
240 244 1.488812 TGCCGTATCCCATAGCACTTT 59.511 47.619 0.00 0.00 0.00 2.66
241 245 2.143925 GCCGTATCCCATAGCACTTTC 58.856 52.381 0.00 0.00 0.00 2.62
244 248 3.309388 CGTATCCCATAGCACTTTCGAG 58.691 50.000 0.00 0.00 0.00 4.04
246 250 4.321304 CGTATCCCATAGCACTTTCGAGAT 60.321 45.833 0.00 0.00 0.00 2.75
248 252 4.855715 TCCCATAGCACTTTCGAGATAG 57.144 45.455 0.00 0.00 0.00 2.08
249 253 4.215908 TCCCATAGCACTTTCGAGATAGT 58.784 43.478 0.00 0.00 0.00 2.12
250 254 5.382616 TCCCATAGCACTTTCGAGATAGTA 58.617 41.667 0.00 0.00 0.00 1.82
251 255 5.473846 TCCCATAGCACTTTCGAGATAGTAG 59.526 44.000 0.00 0.00 0.00 2.57
263 267 6.854091 TCGAGATAGTAGTAGAGCCATAGA 57.146 41.667 0.00 0.00 0.00 1.98
264 268 6.632909 TCGAGATAGTAGTAGAGCCATAGAC 58.367 44.000 0.00 0.00 0.00 2.59
265 269 5.813672 CGAGATAGTAGTAGAGCCATAGACC 59.186 48.000 0.00 0.00 0.00 3.85
266 270 6.574662 CGAGATAGTAGTAGAGCCATAGACCA 60.575 46.154 0.00 0.00 0.00 4.02
267 271 7.278724 AGATAGTAGTAGAGCCATAGACCAT 57.721 40.000 0.00 0.00 0.00 3.55
285 289 3.154710 CCATCCATCCATCCATCAACAG 58.845 50.000 0.00 0.00 0.00 3.16
297 301 3.569701 TCCATCAACAGCTTTTGAGGTTC 59.430 43.478 21.77 0.00 38.87 3.62
298 302 3.571401 CCATCAACAGCTTTTGAGGTTCT 59.429 43.478 21.77 3.60 38.87 3.01
300 304 4.637483 TCAACAGCTTTTGAGGTTCTTG 57.363 40.909 11.24 0.00 31.68 3.02
301 305 3.381272 TCAACAGCTTTTGAGGTTCTTGG 59.619 43.478 11.24 0.00 31.68 3.61
302 306 3.297134 ACAGCTTTTGAGGTTCTTGGA 57.703 42.857 0.00 0.00 0.00 3.53
303 307 3.631250 ACAGCTTTTGAGGTTCTTGGAA 58.369 40.909 0.00 0.00 0.00 3.53
304 308 4.023291 ACAGCTTTTGAGGTTCTTGGAAA 58.977 39.130 0.00 0.00 0.00 3.13
305 309 4.651045 ACAGCTTTTGAGGTTCTTGGAAAT 59.349 37.500 0.00 0.00 0.00 2.17
306 310 5.221322 ACAGCTTTTGAGGTTCTTGGAAATC 60.221 40.000 0.00 0.00 0.00 2.17
307 311 5.010415 CAGCTTTTGAGGTTCTTGGAAATCT 59.990 40.000 0.00 0.00 0.00 2.40
308 312 5.010415 AGCTTTTGAGGTTCTTGGAAATCTG 59.990 40.000 0.00 0.00 0.00 2.90
320 324 0.105039 GAAATCTGGAGGCGACCGAT 59.895 55.000 0.00 3.39 0.00 4.18
321 325 0.105039 AAATCTGGAGGCGACCGATC 59.895 55.000 0.00 0.00 0.00 3.69
322 326 1.043116 AATCTGGAGGCGACCGATCA 61.043 55.000 0.00 0.00 0.00 2.92
323 327 0.829602 ATCTGGAGGCGACCGATCAT 60.830 55.000 0.00 0.00 0.00 2.45
324 328 1.300465 CTGGAGGCGACCGATCATG 60.300 63.158 0.00 0.00 0.00 3.07
325 329 2.663188 GGAGGCGACCGATCATGC 60.663 66.667 0.00 0.00 0.00 4.06
395 400 1.266718 CAACCCCACACTCAAATCACG 59.733 52.381 0.00 0.00 0.00 4.35
396 401 0.472471 ACCCCACACTCAAATCACGT 59.528 50.000 0.00 0.00 0.00 4.49
397 402 1.156736 CCCCACACTCAAATCACGTC 58.843 55.000 0.00 0.00 0.00 4.34
398 403 1.270839 CCCCACACTCAAATCACGTCT 60.271 52.381 0.00 0.00 0.00 4.18
403 408 3.058914 CACACTCAAATCACGTCTTTCCC 60.059 47.826 0.00 0.00 0.00 3.97
409 414 1.657804 ATCACGTCTTTCCCTTCCCT 58.342 50.000 0.00 0.00 0.00 4.20
410 415 1.430992 TCACGTCTTTCCCTTCCCTT 58.569 50.000 0.00 0.00 0.00 3.95
411 416 1.071699 TCACGTCTTTCCCTTCCCTTG 59.928 52.381 0.00 0.00 0.00 3.61
412 417 1.071699 CACGTCTTTCCCTTCCCTTGA 59.928 52.381 0.00 0.00 0.00 3.02
414 419 1.071699 CGTCTTTCCCTTCCCTTGACA 59.928 52.381 0.00 0.00 0.00 3.58
415 420 2.505405 GTCTTTCCCTTCCCTTGACAC 58.495 52.381 0.00 0.00 0.00 3.67
416 421 2.131854 TCTTTCCCTTCCCTTGACACA 58.868 47.619 0.00 0.00 0.00 3.72
417 422 2.512056 TCTTTCCCTTCCCTTGACACAA 59.488 45.455 0.00 0.00 0.00 3.33
418 423 2.358322 TTCCCTTCCCTTGACACAAC 57.642 50.000 0.00 0.00 0.00 3.32
419 424 0.476771 TCCCTTCCCTTGACACAACC 59.523 55.000 0.00 0.00 0.00 3.77
420 425 0.478507 CCCTTCCCTTGACACAACCT 59.521 55.000 0.00 0.00 0.00 3.50
421 426 1.545651 CCCTTCCCTTGACACAACCTC 60.546 57.143 0.00 0.00 0.00 3.85
422 427 1.545651 CCTTCCCTTGACACAACCTCC 60.546 57.143 0.00 0.00 0.00 4.30
423 428 1.421646 CTTCCCTTGACACAACCTCCT 59.578 52.381 0.00 0.00 0.00 3.69
424 429 1.518367 TCCCTTGACACAACCTCCTT 58.482 50.000 0.00 0.00 0.00 3.36
425 430 1.850345 TCCCTTGACACAACCTCCTTT 59.150 47.619 0.00 0.00 0.00 3.11
426 431 1.956477 CCCTTGACACAACCTCCTTTG 59.044 52.381 0.00 0.00 0.00 2.77
427 432 1.338020 CCTTGACACAACCTCCTTTGC 59.662 52.381 0.00 0.00 0.00 3.68
428 433 2.023673 CTTGACACAACCTCCTTTGCA 58.976 47.619 0.00 0.00 0.00 4.08
429 434 2.136298 TGACACAACCTCCTTTGCAA 57.864 45.000 0.00 0.00 0.00 4.08
430 435 2.451490 TGACACAACCTCCTTTGCAAA 58.549 42.857 12.14 12.14 0.00 3.68
431 436 3.030291 TGACACAACCTCCTTTGCAAAT 58.970 40.909 13.23 0.00 0.00 2.32
432 437 3.068024 TGACACAACCTCCTTTGCAAATC 59.932 43.478 13.23 3.81 0.00 2.17
433 438 2.365293 ACACAACCTCCTTTGCAAATCC 59.635 45.455 13.23 0.00 0.00 3.01
434 439 2.629617 CACAACCTCCTTTGCAAATCCT 59.370 45.455 13.23 0.00 0.00 3.24
435 440 2.629617 ACAACCTCCTTTGCAAATCCTG 59.370 45.455 13.23 7.21 0.00 3.86
436 441 1.928868 ACCTCCTTTGCAAATCCTGG 58.071 50.000 13.23 10.53 0.00 4.45
437 442 1.188863 CCTCCTTTGCAAATCCTGGG 58.811 55.000 13.23 10.14 0.00 4.45
438 443 1.272648 CCTCCTTTGCAAATCCTGGGA 60.273 52.381 13.23 13.94 0.00 4.37
439 444 2.097825 CTCCTTTGCAAATCCTGGGAG 58.902 52.381 22.67 22.67 33.98 4.30
440 445 1.188863 CCTTTGCAAATCCTGGGAGG 58.811 55.000 13.23 3.58 36.46 4.30
469 474 5.079643 TGCTTGGAAAGGCTAATCTTTTCT 58.920 37.500 0.00 0.00 46.35 2.52
471 476 5.391312 TTGGAAAGGCTAATCTTTTCTGC 57.609 39.130 0.00 0.00 37.13 4.26
473 478 5.815581 TGGAAAGGCTAATCTTTTCTGCTA 58.184 37.500 0.00 0.00 37.13 3.49
474 479 5.882557 TGGAAAGGCTAATCTTTTCTGCTAG 59.117 40.000 0.00 0.00 37.13 3.42
475 480 5.883115 GGAAAGGCTAATCTTTTCTGCTAGT 59.117 40.000 0.00 0.00 37.13 2.57
476 481 7.048512 GGAAAGGCTAATCTTTTCTGCTAGTA 58.951 38.462 0.00 0.00 37.13 1.82
572 577 1.455217 GCCCTCGCCTACCTACTCA 60.455 63.158 0.00 0.00 0.00 3.41
609 614 0.902531 TGGGTAGTACTTGCTGGCTC 59.097 55.000 0.00 0.00 0.00 4.70
623 628 2.278596 GCTCGCTCGCCGTCAATA 60.279 61.111 0.00 0.00 38.35 1.90
715 720 3.368323 CGCCAGGGCTTCATTTATTGTTT 60.368 43.478 8.91 0.00 39.32 2.83
720 725 3.118408 GGGCTTCATTTATTGTTTCCCCC 60.118 47.826 0.00 0.00 0.00 5.40
721 726 3.430236 GGCTTCATTTATTGTTTCCCCCG 60.430 47.826 0.00 0.00 0.00 5.73
722 727 3.780902 CTTCATTTATTGTTTCCCCCGC 58.219 45.455 0.00 0.00 0.00 6.13
724 729 3.165875 TCATTTATTGTTTCCCCCGCAA 58.834 40.909 0.00 0.00 0.00 4.85
726 731 4.040461 TCATTTATTGTTTCCCCCGCAAAA 59.960 37.500 0.00 0.00 0.00 2.44
727 732 3.669251 TTATTGTTTCCCCCGCAAAAG 57.331 42.857 0.00 0.00 0.00 2.27
728 733 1.710816 ATTGTTTCCCCCGCAAAAGA 58.289 45.000 0.00 0.00 0.00 2.52
729 734 1.710816 TTGTTTCCCCCGCAAAAGAT 58.289 45.000 0.00 0.00 0.00 2.40
777 785 0.253044 TCGGGGATTTGAGAGCCTTG 59.747 55.000 0.00 0.00 0.00 3.61
867 875 3.496130 AGCTTCGATTTCAGTGTGTTCTG 59.504 43.478 0.00 0.00 36.85 3.02
871 879 2.480419 CGATTTCAGTGTGTTCTGGGAC 59.520 50.000 0.00 0.00 36.25 4.46
913 921 1.208535 TGTATTTCCTCGCCGGATTGT 59.791 47.619 5.05 0.00 42.70 2.71
962 970 1.667724 CGAGGAGCGCAAGATTTCATT 59.332 47.619 11.47 0.00 43.02 2.57
1017 1025 1.519455 CATGGGTTCTCGTCCTCGC 60.519 63.158 0.00 0.00 36.96 5.03
1167 1175 0.973632 ACACGGTGGTCAAGATGCTA 59.026 50.000 13.48 0.00 0.00 3.49
1245 1253 2.498726 CTCAGGAAGAGCGGCCTC 59.501 66.667 0.00 0.00 37.59 4.70
1372 1380 1.676014 GCTGCAACGTCAGGTATCCTT 60.676 52.381 6.41 0.00 34.74 3.36
1416 1424 1.730064 CTCATTTGTTGCCATGCTTGC 59.270 47.619 0.00 0.00 0.00 4.01
1440 1448 9.361315 TGCTTGATTGATTGATTGATTTGTAAG 57.639 29.630 0.00 0.00 0.00 2.34
1490 1502 7.221067 GTCTCATTTGATTGTACTAGTTCGGAG 59.779 40.741 0.00 0.00 0.00 4.63
1553 1565 1.808343 ACATTTTTCGCGGTACCTTCC 59.192 47.619 10.90 0.00 0.00 3.46
1567 1579 2.894731 ACCTTCCATCTGTCTGTCTCA 58.105 47.619 0.00 0.00 0.00 3.27
1596 1608 1.537202 GCCAACAAGTGTAGCTCTTGG 59.463 52.381 15.73 7.37 44.29 3.61
1607 1619 2.299326 AGCTCTTGGTTGGCTCAATT 57.701 45.000 0.00 0.00 0.00 2.32
1637 1649 1.153958 GACCTGCTTCATTTGCGCC 60.154 57.895 4.18 0.00 0.00 6.53
1679 1691 7.390027 ACAGTGACAAATCTAGAATTAGCAGT 58.610 34.615 0.00 0.00 0.00 4.40
1868 1885 3.765381 TCACACATGATTGATGGTGGTT 58.235 40.909 0.00 0.00 35.53 3.67
1871 1888 4.219070 CACACATGATTGATGGTGGTTTCT 59.781 41.667 0.00 0.00 36.23 2.52
1906 1923 8.462016 ACTTTACTTTGCTCATCAATTCATACC 58.538 33.333 0.00 0.00 34.12 2.73
1913 1930 5.294306 TGCTCATCAATTCATACCGTTTCTC 59.706 40.000 0.00 0.00 0.00 2.87
1926 1943 8.479689 TCATACCGTTTCTCTAAATTACATGGA 58.520 33.333 0.00 0.00 0.00 3.41
1928 1945 9.847224 ATACCGTTTCTCTAAATTACATGGAAT 57.153 29.630 0.00 0.00 0.00 3.01
1929 1946 8.575649 ACCGTTTCTCTAAATTACATGGAATT 57.424 30.769 10.28 10.28 0.00 2.17
1930 1947 8.674607 ACCGTTTCTCTAAATTACATGGAATTC 58.325 33.333 16.32 0.00 0.00 2.17
1931 1948 8.893727 CCGTTTCTCTAAATTACATGGAATTCT 58.106 33.333 16.32 9.27 0.00 2.40
1932 1949 9.922305 CGTTTCTCTAAATTACATGGAATTCTC 57.078 33.333 16.32 1.54 0.00 2.87
1971 1988 1.606313 CCATGGTTCCAGCCGGTTT 60.606 57.895 2.57 0.00 0.00 3.27
2000 2017 8.105829 ACTACTGGATTCTCATCATCACTTTTT 58.894 33.333 0.00 0.00 0.00 1.94
2100 2119 8.338072 TCCTATTTAAAAATGACGCAAGGTTA 57.662 30.769 0.00 0.00 46.39 2.85
2341 2361 6.892658 TTACACAATCACATAATATGGGCC 57.107 37.500 5.16 0.00 32.41 5.80
2624 2650 6.879458 TCTGTCTATTGTAGAAAAAGGCCTTC 59.121 38.462 20.79 6.65 36.40 3.46
2649 2675 5.596836 ATGGTTGTAGGCCATTTTGTATG 57.403 39.130 5.01 0.00 43.65 2.39
2794 2831 4.024472 GCAGAAACCAGTCAACTCTTCTTC 60.024 45.833 0.00 0.00 0.00 2.87
2795 2832 5.363939 CAGAAACCAGTCAACTCTTCTTCT 58.636 41.667 0.00 0.00 0.00 2.85
2796 2833 5.819901 CAGAAACCAGTCAACTCTTCTTCTT 59.180 40.000 0.00 0.00 0.00 2.52
2807 2844 4.314121 ACTCTTCTTCTTTGTGCTGCTAG 58.686 43.478 0.00 0.00 0.00 3.42
2816 2853 5.005740 TCTTTGTGCTGCTAGAAATGACAT 58.994 37.500 0.00 0.00 0.00 3.06
3037 3074 1.004185 GCTCACAGCATGCATTACGAG 60.004 52.381 21.98 17.38 42.53 4.18
3113 3150 4.158764 ACCATTTTCAAACGGAACTGAACA 59.841 37.500 0.00 0.00 34.56 3.18
3267 3304 6.239887 GGGTGATATAATAGTTGGCCTCTTCA 60.240 42.308 3.32 0.00 0.00 3.02
3271 3308 3.636153 AATAGTTGGCCTCTTCACTCC 57.364 47.619 3.32 0.00 0.00 3.85
3365 3404 2.104967 TCACTACCTATTGGACCGTGG 58.895 52.381 0.00 0.00 37.04 4.94
3463 3502 8.203485 TCAACCTTTTTAGCACATTCTGAAAAT 58.797 29.630 0.00 0.00 33.19 1.82
3465 3504 7.725251 ACCTTTTTAGCACATTCTGAAAATCA 58.275 30.769 0.00 0.00 33.19 2.57
3501 3578 7.425577 TCTGTTCTTTGTATGATGTGTTCAG 57.574 36.000 0.00 0.00 37.89 3.02
3508 3585 9.283768 TCTTTGTATGATGTGTTCAGTTTATGT 57.716 29.630 0.00 0.00 37.89 2.29
3516 3593 6.539649 TGTGTTCAGTTTATGTAGCTGTTC 57.460 37.500 0.00 0.00 0.00 3.18
3525 3602 7.011763 CAGTTTATGTAGCTGTTCTGCACATAT 59.988 37.037 17.43 8.15 40.21 1.78
3567 3644 9.889128 TGTTAAATACCTAACCCATAGTAACAC 57.111 33.333 0.00 0.00 29.82 3.32
3586 3663 6.382869 AACACTCAATTTCTTGAACTCAGG 57.617 37.500 0.00 0.00 40.78 3.86
3588 3665 6.591935 ACACTCAATTTCTTGAACTCAGGTA 58.408 36.000 0.00 0.00 40.78 3.08
3617 3698 6.684897 TCAACCTGGAAATCCATGAATTTT 57.315 33.333 11.12 0.00 46.46 1.82
3633 3714 6.857777 TGAATTTTATTGGTGGTTTTGCAG 57.142 33.333 0.00 0.00 0.00 4.41
3724 3805 5.507985 GCTTGTCTGAACTACTTTTTGGCAT 60.508 40.000 0.00 0.00 0.00 4.40
3748 3829 3.057315 AGGCAAACCATCGACTTTGATTG 60.057 43.478 13.57 7.19 39.06 2.67
3749 3830 3.305335 GGCAAACCATCGACTTTGATTGT 60.305 43.478 13.57 0.00 35.26 2.71
3754 3835 7.566868 GCAAACCATCGACTTTGATTGTTAAAC 60.567 37.037 13.57 0.00 34.27 2.01
3864 4021 7.327214 TCTTTTTAAGTTGCAACTCCAATGTT 58.673 30.769 31.20 16.68 38.57 2.71
3878 4035 2.557924 CCAATGTTTGCTACCTGCTTGA 59.442 45.455 0.00 0.00 43.37 3.02
3956 4113 7.412563 GCACATGATGAAATGAAATGGTCTTTG 60.413 37.037 0.00 0.00 0.00 2.77
3974 4131 5.123820 GTCTTTGCTGCTTCCACAATATGTA 59.876 40.000 0.00 0.00 0.00 2.29
4036 4194 5.132480 TCCATGTTCTCATGTCCCATATTCA 59.868 40.000 7.30 0.00 46.99 2.57
4037 4195 5.472478 CCATGTTCTCATGTCCCATATTCAG 59.528 44.000 7.30 0.00 46.99 3.02
4049 4207 6.156775 TGTCCCATATTCAGTCTCATTCTTCA 59.843 38.462 0.00 0.00 0.00 3.02
4319 4477 0.253327 AGCCTTCTGACGGGGATTTC 59.747 55.000 2.10 0.00 0.00 2.17
4373 4531 4.742438 TGTAAAATTTCTGAGCGACACC 57.258 40.909 0.00 0.00 0.00 4.16
4538 4696 2.512515 GACACGCTCATCTGGGCC 60.513 66.667 0.00 0.00 0.00 5.80
4562 4720 6.468359 CCCTGAAGAAGAATGGATATGGGAAT 60.468 42.308 0.00 0.00 31.98 3.01
4829 4987 1.891919 GCTGAACTTCGGTGTGCCA 60.892 57.895 0.00 0.00 34.09 4.92
4895 5053 0.178981 AATGGTGTGTGCTGAAGCCT 60.179 50.000 0.00 0.00 41.18 4.58
4947 5105 4.778415 CGGTGAGCTACGCGTGCT 62.778 66.667 27.93 27.93 44.24 4.40
5313 5474 2.370445 GCCTGGCAGCTTAGAGGGA 61.370 63.158 15.17 0.00 0.00 4.20
5410 5588 1.632422 CCGCATGGTTGAATTCTTGC 58.368 50.000 7.05 7.28 0.00 4.01
5460 5638 1.679680 GTGATTGGGATGGTGATGCAG 59.320 52.381 0.00 0.00 0.00 4.41
5487 5665 5.694995 ACCATTTATACCCAGGAATGTGAG 58.305 41.667 0.00 0.00 0.00 3.51
5488 5666 4.520492 CCATTTATACCCAGGAATGTGAGC 59.480 45.833 0.00 0.00 0.00 4.26
5567 5745 4.647424 TTTTGGTTTCTAGGCACAACAG 57.353 40.909 0.00 0.00 0.00 3.16
5568 5746 1.604604 TGGTTTCTAGGCACAACAGC 58.395 50.000 0.00 0.00 0.00 4.40
5619 5820 6.888632 AGTATTTCTGAATGCATTTCCACTCT 59.111 34.615 14.33 3.68 33.04 3.24
5644 5848 4.013728 TGGAACACATTGGTAACCTATGC 58.986 43.478 0.00 0.00 39.65 3.14
5645 5849 4.013728 GGAACACATTGGTAACCTATGCA 58.986 43.478 0.00 0.00 39.65 3.96
5646 5850 4.142469 GGAACACATTGGTAACCTATGCAC 60.142 45.833 0.00 0.00 39.65 4.57
5647 5851 3.352648 ACACATTGGTAACCTATGCACC 58.647 45.455 0.00 0.00 39.65 5.01
5835 6042 2.029623 ACCATCTGCTTGAATCCATGC 58.970 47.619 0.00 0.00 42.01 4.06
5873 6080 5.821516 TGTTTTTCAGTGGTTGTTATCGT 57.178 34.783 0.00 0.00 0.00 3.73
5904 6111 1.270465 CCAGCTATGTCGGCATCATCA 60.270 52.381 5.39 0.00 36.58 3.07
5905 6112 2.614734 CCAGCTATGTCGGCATCATCAT 60.615 50.000 5.39 0.00 36.58 2.45
5960 6175 2.462456 TTTGTAGCTCTGGACTGCAG 57.538 50.000 13.48 13.48 31.22 4.41
5992 6207 0.769873 GTGGATGGCTCATCTCCCAT 59.230 55.000 12.89 0.00 44.25 4.00
6030 6247 5.687166 TTTTCCTCACCATCCGTATAACT 57.313 39.130 0.00 0.00 0.00 2.24
6037 6254 7.727186 TCCTCACCATCCGTATAACTACTTAAT 59.273 37.037 0.00 0.00 0.00 1.40
6040 6257 8.916062 TCACCATCCGTATAACTACTTAATGAA 58.084 33.333 0.00 0.00 0.00 2.57
6041 6258 9.193133 CACCATCCGTATAACTACTTAATGAAG 57.807 37.037 0.00 0.00 38.76 3.02
6047 6264 9.890352 CCGTATAACTACTTAATGAAGTACTCC 57.110 37.037 0.00 0.00 44.36 3.85
6048 6265 9.890352 CGTATAACTACTTAATGAAGTACTCCC 57.110 37.037 0.00 0.00 44.36 4.30
6051 6268 7.421087 AACTACTTAATGAAGTACTCCCTCC 57.579 40.000 0.00 0.00 44.36 4.30
6052 6269 5.593502 ACTACTTAATGAAGTACTCCCTCCG 59.406 44.000 0.00 0.00 44.36 4.63
6053 6270 4.351127 ACTTAATGAAGTACTCCCTCCGT 58.649 43.478 0.00 0.00 44.36 4.69
6054 6271 4.776308 ACTTAATGAAGTACTCCCTCCGTT 59.224 41.667 0.00 0.00 44.36 4.44
6055 6272 5.247792 ACTTAATGAAGTACTCCCTCCGTTT 59.752 40.000 0.00 0.00 44.36 3.60
6056 6273 3.889520 ATGAAGTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
6057 6274 2.600790 TGAAGTACTCCCTCCGTTTCA 58.399 47.619 0.00 0.00 0.00 2.69
6058 6275 2.967201 TGAAGTACTCCCTCCGTTTCAA 59.033 45.455 0.00 0.00 0.00 2.69
6059 6276 3.388676 TGAAGTACTCCCTCCGTTTCAAA 59.611 43.478 0.00 0.00 0.00 2.69
6060 6277 4.141665 TGAAGTACTCCCTCCGTTTCAAAA 60.142 41.667 0.00 0.00 0.00 2.44
6061 6278 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
6062 6279 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
6063 6280 5.731591 AGTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
6064 6281 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
6065 6282 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
6066 6283 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
6067 6284 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
6068 6285 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
6069 6286 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
6070 6287 5.186198 CCTCCGTTTCAAAATAGATGACCT 58.814 41.667 0.00 0.00 0.00 3.85
6071 6288 6.346096 CCTCCGTTTCAAAATAGATGACCTA 58.654 40.000 0.00 0.00 0.00 3.08
6072 6289 6.821665 CCTCCGTTTCAAAATAGATGACCTAA 59.178 38.462 0.00 0.00 0.00 2.69
6073 6290 7.201617 CCTCCGTTTCAAAATAGATGACCTAAC 60.202 40.741 0.00 0.00 0.00 2.34
6074 6291 6.596497 TCCGTTTCAAAATAGATGACCTAACC 59.404 38.462 0.00 0.00 0.00 2.85
6075 6292 6.183360 CCGTTTCAAAATAGATGACCTAACCC 60.183 42.308 0.00 0.00 0.00 4.11
6076 6293 6.373216 CGTTTCAAAATAGATGACCTAACCCA 59.627 38.462 0.00 0.00 0.00 4.51
6077 6294 7.094549 CGTTTCAAAATAGATGACCTAACCCAA 60.095 37.037 0.00 0.00 0.00 4.12
6078 6295 7.696992 TTCAAAATAGATGACCTAACCCAAC 57.303 36.000 0.00 0.00 0.00 3.77
6079 6296 7.027874 TCAAAATAGATGACCTAACCCAACT 57.972 36.000 0.00 0.00 0.00 3.16
6080 6297 7.466804 TCAAAATAGATGACCTAACCCAACTT 58.533 34.615 0.00 0.00 0.00 2.66
6081 6298 7.947890 TCAAAATAGATGACCTAACCCAACTTT 59.052 33.333 0.00 0.00 0.00 2.66
6082 6299 7.703058 AAATAGATGACCTAACCCAACTTTG 57.297 36.000 0.00 0.00 0.00 2.77
6083 6300 4.724279 AGATGACCTAACCCAACTTTGT 57.276 40.909 0.00 0.00 0.00 2.83
6084 6301 5.836024 AGATGACCTAACCCAACTTTGTA 57.164 39.130 0.00 0.00 0.00 2.41
6085 6302 6.388619 AGATGACCTAACCCAACTTTGTAT 57.611 37.500 0.00 0.00 0.00 2.29
6086 6303 6.790319 AGATGACCTAACCCAACTTTGTATT 58.210 36.000 0.00 0.00 0.00 1.89
6087 6304 7.924541 AGATGACCTAACCCAACTTTGTATTA 58.075 34.615 0.00 0.00 0.00 0.98
6088 6305 8.387813 AGATGACCTAACCCAACTTTGTATTAA 58.612 33.333 0.00 0.00 0.00 1.40
6089 6306 7.748691 TGACCTAACCCAACTTTGTATTAAC 57.251 36.000 0.00 0.00 0.00 2.01
6090 6307 7.519927 TGACCTAACCCAACTTTGTATTAACT 58.480 34.615 0.00 0.00 0.00 2.24
6091 6308 8.000127 TGACCTAACCCAACTTTGTATTAACTT 59.000 33.333 0.00 0.00 0.00 2.66
6092 6309 8.173542 ACCTAACCCAACTTTGTATTAACTTG 57.826 34.615 0.00 0.00 0.00 3.16
6093 6310 7.231925 ACCTAACCCAACTTTGTATTAACTTGG 59.768 37.037 0.00 0.00 0.00 3.61
6096 6313 6.020971 CCCAACTTTGTATTAACTTGGGTC 57.979 41.667 5.27 0.00 42.01 4.46
6097 6314 5.536916 CCCAACTTTGTATTAACTTGGGTCA 59.463 40.000 5.27 0.00 42.01 4.02
6098 6315 6.210584 CCCAACTTTGTATTAACTTGGGTCAT 59.789 38.462 5.27 0.00 42.01 3.06
6099 6316 7.312899 CCAACTTTGTATTAACTTGGGTCATC 58.687 38.462 0.00 0.00 0.00 2.92
6100 6317 7.176690 CCAACTTTGTATTAACTTGGGTCATCT 59.823 37.037 0.00 0.00 0.00 2.90
6101 6318 9.226606 CAACTTTGTATTAACTTGGGTCATCTA 57.773 33.333 0.00 0.00 0.00 1.98
6102 6319 9.975218 AACTTTGTATTAACTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
6103 6320 9.975218 ACTTTGTATTAACTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
6107 6324 9.184523 TGTATTAACTTGGGTCATCTATTTTGG 57.815 33.333 0.00 0.00 0.00 3.28
6108 6325 9.403583 GTATTAACTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
6109 6326 8.893563 ATTAACTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
6110 6327 6.590234 AACTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
6111 6328 4.700213 ACTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
6112 6329 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
6113 6330 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
6114 6331 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
6115 6332 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
6116 6333 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6183 6400 6.155393 ACCAAACAATTGAACTAAAACCCTGA 59.845 34.615 13.59 0.00 38.94 3.86
6212 6429 2.492012 CTCATCCAAGCTCCACATAGC 58.508 52.381 0.00 0.00 43.11 2.97
6231 6448 8.702438 CACATAGCTTCATAAACTTTTGGTTTG 58.298 33.333 0.00 0.00 46.30 2.93
6240 6457 9.638239 TCATAAACTTTTGGTTTGATATCAAGC 57.362 29.630 20.56 20.56 46.30 4.01
6241 6458 8.586273 CATAAACTTTTGGTTTGATATCAAGCG 58.414 33.333 21.49 12.39 46.30 4.68
6242 6459 5.957842 ACTTTTGGTTTGATATCAAGCGA 57.042 34.783 21.49 16.97 37.85 4.93
6243 6460 6.325919 ACTTTTGGTTTGATATCAAGCGAA 57.674 33.333 20.44 20.44 37.85 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.463674 ATGCAAATCCAGGACGGTTC 58.536 50.000 0.00 0.00 35.57 3.62
50 51 4.211920 AGTAGAAAGATTCCTCCTCTCGG 58.788 47.826 0.00 0.00 0.00 4.63
87 88 5.506151 GGTGGTTTTCTGGTTACTTTTACGG 60.506 44.000 0.00 0.00 0.00 4.02
90 91 6.834451 TGATGGTGGTTTTCTGGTTACTTTTA 59.166 34.615 0.00 0.00 0.00 1.52
91 92 5.659079 TGATGGTGGTTTTCTGGTTACTTTT 59.341 36.000 0.00 0.00 0.00 2.27
92 93 5.205056 TGATGGTGGTTTTCTGGTTACTTT 58.795 37.500 0.00 0.00 0.00 2.66
102 103 5.003804 ACTACTGTCATGATGGTGGTTTTC 58.996 41.667 0.00 0.00 0.00 2.29
123 124 3.537580 TGGTTTGTTAGACGCTTTCACT 58.462 40.909 0.00 0.00 0.00 3.41
124 125 3.955771 TGGTTTGTTAGACGCTTTCAC 57.044 42.857 0.00 0.00 0.00 3.18
125 126 3.304391 GCATGGTTTGTTAGACGCTTTCA 60.304 43.478 0.00 0.00 0.00 2.69
126 127 3.058224 AGCATGGTTTGTTAGACGCTTTC 60.058 43.478 0.00 0.00 0.00 2.62
234 238 5.445845 GCTCTACTACTATCTCGAAAGTGC 58.554 45.833 5.28 0.00 0.00 4.40
237 241 6.811253 ATGGCTCTACTACTATCTCGAAAG 57.189 41.667 0.00 0.00 0.00 2.62
239 243 7.098477 GTCTATGGCTCTACTACTATCTCGAA 58.902 42.308 0.00 0.00 0.00 3.71
240 244 6.351202 GGTCTATGGCTCTACTACTATCTCGA 60.351 46.154 0.00 0.00 0.00 4.04
241 245 5.813672 GGTCTATGGCTCTACTACTATCTCG 59.186 48.000 0.00 0.00 0.00 4.04
244 248 6.544564 GGATGGTCTATGGCTCTACTACTATC 59.455 46.154 0.00 0.00 0.00 2.08
246 250 5.312443 TGGATGGTCTATGGCTCTACTACTA 59.688 44.000 0.00 0.00 0.00 1.82
248 252 4.408276 TGGATGGTCTATGGCTCTACTAC 58.592 47.826 0.00 0.00 0.00 2.73
249 253 4.741928 TGGATGGTCTATGGCTCTACTA 57.258 45.455 0.00 0.00 0.00 1.82
250 254 3.619900 TGGATGGTCTATGGCTCTACT 57.380 47.619 0.00 0.00 0.00 2.57
251 255 3.196685 GGATGGATGGTCTATGGCTCTAC 59.803 52.174 0.00 0.00 0.00 2.59
263 267 2.515005 TGTTGATGGATGGATGGATGGT 59.485 45.455 0.00 0.00 0.00 3.55
264 268 3.154710 CTGTTGATGGATGGATGGATGG 58.845 50.000 0.00 0.00 0.00 3.51
265 269 2.557056 GCTGTTGATGGATGGATGGATG 59.443 50.000 0.00 0.00 0.00 3.51
266 270 2.445905 AGCTGTTGATGGATGGATGGAT 59.554 45.455 0.00 0.00 0.00 3.41
267 271 1.848388 AGCTGTTGATGGATGGATGGA 59.152 47.619 0.00 0.00 0.00 3.41
285 289 5.225642 CAGATTTCCAAGAACCTCAAAAGC 58.774 41.667 0.00 0.00 0.00 3.51
297 301 1.373570 GTCGCCTCCAGATTTCCAAG 58.626 55.000 0.00 0.00 0.00 3.61
298 302 0.035439 GGTCGCCTCCAGATTTCCAA 60.035 55.000 0.00 0.00 0.00 3.53
300 304 1.521681 CGGTCGCCTCCAGATTTCC 60.522 63.158 0.00 0.00 0.00 3.13
301 305 0.105039 ATCGGTCGCCTCCAGATTTC 59.895 55.000 0.00 0.00 0.00 2.17
302 306 0.105039 GATCGGTCGCCTCCAGATTT 59.895 55.000 0.00 0.00 0.00 2.17
303 307 1.043116 TGATCGGTCGCCTCCAGATT 61.043 55.000 0.00 0.00 0.00 2.40
304 308 0.829602 ATGATCGGTCGCCTCCAGAT 60.830 55.000 0.00 0.00 0.00 2.90
305 309 1.455773 ATGATCGGTCGCCTCCAGA 60.456 57.895 0.00 0.00 0.00 3.86
306 310 1.300465 CATGATCGGTCGCCTCCAG 60.300 63.158 0.00 0.00 0.00 3.86
307 311 2.814604 CATGATCGGTCGCCTCCA 59.185 61.111 0.00 0.00 0.00 3.86
308 312 2.663188 GCATGATCGGTCGCCTCC 60.663 66.667 0.00 0.00 0.00 4.30
324 328 4.842091 CAAAGCGGCGGCATGAGC 62.842 66.667 19.21 3.80 43.41 4.26
325 329 4.842091 GCAAAGCGGCGGCATGAG 62.842 66.667 19.21 6.36 43.41 2.90
395 400 2.158667 TGTGTCAAGGGAAGGGAAAGAC 60.159 50.000 0.00 0.00 0.00 3.01
396 401 2.131854 TGTGTCAAGGGAAGGGAAAGA 58.868 47.619 0.00 0.00 0.00 2.52
397 402 2.623416 GTTGTGTCAAGGGAAGGGAAAG 59.377 50.000 0.00 0.00 0.00 2.62
398 403 2.661718 GTTGTGTCAAGGGAAGGGAAA 58.338 47.619 0.00 0.00 0.00 3.13
403 408 1.421646 AGGAGGTTGTGTCAAGGGAAG 59.578 52.381 0.00 0.00 0.00 3.46
409 414 2.136298 TGCAAAGGAGGTTGTGTCAA 57.864 45.000 0.00 0.00 0.00 3.18
410 415 2.136298 TTGCAAAGGAGGTTGTGTCA 57.864 45.000 0.00 0.00 0.00 3.58
411 416 3.552890 GGATTTGCAAAGGAGGTTGTGTC 60.553 47.826 18.19 5.84 0.00 3.67
412 417 2.365293 GGATTTGCAAAGGAGGTTGTGT 59.635 45.455 18.19 0.00 0.00 3.72
414 419 2.629617 CAGGATTTGCAAAGGAGGTTGT 59.370 45.455 18.19 0.00 0.00 3.32
415 420 2.028748 CCAGGATTTGCAAAGGAGGTTG 60.029 50.000 18.19 9.35 0.00 3.77
416 421 2.250924 CCAGGATTTGCAAAGGAGGTT 58.749 47.619 18.19 0.00 0.00 3.50
417 422 1.550869 CCCAGGATTTGCAAAGGAGGT 60.551 52.381 18.19 0.00 0.00 3.85
418 423 1.188863 CCCAGGATTTGCAAAGGAGG 58.811 55.000 18.19 15.12 0.00 4.30
419 424 2.097825 CTCCCAGGATTTGCAAAGGAG 58.902 52.381 22.67 22.67 33.99 3.69
420 425 1.272648 CCTCCCAGGATTTGCAAAGGA 60.273 52.381 18.19 16.01 37.67 3.36
421 426 1.188863 CCTCCCAGGATTTGCAAAGG 58.811 55.000 18.19 12.57 37.67 3.11
422 427 2.220653 TCCTCCCAGGATTTGCAAAG 57.779 50.000 18.19 3.59 40.06 2.77
432 437 2.175499 TCCAAGCAATAATCCTCCCAGG 59.825 50.000 0.00 0.00 36.46 4.45
433 438 3.582998 TCCAAGCAATAATCCTCCCAG 57.417 47.619 0.00 0.00 0.00 4.45
434 439 4.280819 CTTTCCAAGCAATAATCCTCCCA 58.719 43.478 0.00 0.00 0.00 4.37
435 440 3.638627 CCTTTCCAAGCAATAATCCTCCC 59.361 47.826 0.00 0.00 0.00 4.30
436 441 3.068732 GCCTTTCCAAGCAATAATCCTCC 59.931 47.826 0.00 0.00 0.00 4.30
437 442 3.956848 AGCCTTTCCAAGCAATAATCCTC 59.043 43.478 0.00 0.00 0.00 3.71
438 443 3.986435 AGCCTTTCCAAGCAATAATCCT 58.014 40.909 0.00 0.00 0.00 3.24
439 444 5.852282 TTAGCCTTTCCAAGCAATAATCC 57.148 39.130 0.00 0.00 0.00 3.01
440 445 7.282332 AGATTAGCCTTTCCAAGCAATAATC 57.718 36.000 0.00 0.00 32.12 1.75
441 446 7.666063 AAGATTAGCCTTTCCAAGCAATAAT 57.334 32.000 0.00 0.00 0.00 1.28
442 447 7.480760 AAAGATTAGCCTTTCCAAGCAATAA 57.519 32.000 0.00 0.00 31.19 1.40
443 448 7.397192 AGAAAAGATTAGCCTTTCCAAGCAATA 59.603 33.333 0.00 0.00 35.50 1.90
447 452 5.405797 CAGAAAAGATTAGCCTTTCCAAGC 58.594 41.667 0.00 0.00 35.50 4.01
469 474 3.071602 GGGATGGATCAAAGCTACTAGCA 59.928 47.826 10.73 0.00 45.56 3.49
471 476 4.837860 AGAGGGATGGATCAAAGCTACTAG 59.162 45.833 0.00 0.00 0.00 2.57
473 478 3.390639 CAGAGGGATGGATCAAAGCTACT 59.609 47.826 0.00 0.00 0.00 2.57
474 479 3.737850 CAGAGGGATGGATCAAAGCTAC 58.262 50.000 0.00 0.00 0.00 3.58
475 480 2.105477 GCAGAGGGATGGATCAAAGCTA 59.895 50.000 0.00 0.00 0.00 3.32
476 481 1.133853 GCAGAGGGATGGATCAAAGCT 60.134 52.381 0.00 0.00 0.00 3.74
561 566 3.946558 GTGAGTACTGGTGAGTAGGTAGG 59.053 52.174 0.00 0.00 35.24 3.18
562 567 3.946558 GGTGAGTACTGGTGAGTAGGTAG 59.053 52.174 0.00 0.00 35.24 3.18
563 568 3.590630 AGGTGAGTACTGGTGAGTAGGTA 59.409 47.826 0.00 0.00 35.24 3.08
564 569 2.379226 AGGTGAGTACTGGTGAGTAGGT 59.621 50.000 0.00 0.00 35.24 3.08
572 577 1.076906 AGGCGAGGTGAGTACTGGT 59.923 57.895 0.00 0.00 0.00 4.00
609 614 2.960129 GGGTATTGACGGCGAGCG 60.960 66.667 16.62 0.00 0.00 5.03
623 628 3.782443 GAGATTCACGGGGCGGGT 61.782 66.667 0.00 0.00 0.00 5.28
715 720 0.323360 CTGGAATCTTTTGCGGGGGA 60.323 55.000 0.00 0.00 0.00 4.81
720 725 0.798776 ACGAGCTGGAATCTTTTGCG 59.201 50.000 1.44 0.00 0.00 4.85
721 726 1.135575 CCACGAGCTGGAATCTTTTGC 60.136 52.381 1.44 0.00 43.95 3.68
722 727 1.470098 CCCACGAGCTGGAATCTTTTG 59.530 52.381 1.44 0.00 43.95 2.44
724 729 0.693049 ACCCACGAGCTGGAATCTTT 59.307 50.000 1.44 0.00 43.95 2.52
726 731 1.599047 CACCCACGAGCTGGAATCT 59.401 57.895 1.44 0.00 43.95 2.40
727 732 1.450312 CCACCCACGAGCTGGAATC 60.450 63.158 1.44 0.00 43.95 2.52
728 733 1.903877 CTCCACCCACGAGCTGGAAT 61.904 60.000 1.44 0.00 43.95 3.01
729 734 2.525629 TCCACCCACGAGCTGGAA 60.526 61.111 1.44 0.00 43.95 3.53
777 785 3.070748 GAGGCTCCAAGAACTCAAGAAC 58.929 50.000 2.15 0.00 0.00 3.01
804 812 0.038890 AAAGAAAGGGGAGGAGCAGC 59.961 55.000 0.00 0.00 0.00 5.25
809 817 0.475048 ACCGGAAAGAAAGGGGAGGA 60.475 55.000 9.46 0.00 0.00 3.71
818 826 1.491332 TGAAACCCTCACCGGAAAGAA 59.509 47.619 9.46 0.00 33.16 2.52
843 851 3.393089 ACACACTGAAATCGAAGCTCT 57.607 42.857 0.00 0.00 0.00 4.09
913 921 3.431346 CCGAGCTCAGATCTTGGATGAAA 60.431 47.826 15.40 0.00 37.30 2.69
950 958 2.928116 GCAGCTCCAAATGAAATCTTGC 59.072 45.455 0.00 0.00 0.00 4.01
1063 1071 1.831652 GACCAGGAGACCACCACCAG 61.832 65.000 0.00 0.00 0.00 4.00
1167 1175 0.472471 TCTGGAAGCCGTTGTCCTTT 59.528 50.000 0.00 0.00 34.77 3.11
1245 1253 1.592669 GATGCCGACCATGACCTCG 60.593 63.158 0.00 0.00 33.29 4.63
1440 1448 5.046529 CACACTCCAGATAGCATGAACTAC 58.953 45.833 0.00 0.00 0.00 2.73
1490 1502 5.359576 ACTCTAGACTCATGACAGTTCATCC 59.640 44.000 0.00 0.00 40.79 3.51
1553 1565 1.134759 CCAGCCTGAGACAGACAGATG 60.135 57.143 0.00 0.00 37.54 2.90
1596 1608 2.160417 CCAAGTCGAGAATTGAGCCAAC 59.840 50.000 13.90 0.00 38.53 3.77
1607 1619 0.251386 AGCAGGTCTCCAAGTCGAGA 60.251 55.000 0.00 0.00 36.53 4.04
1637 1649 2.104792 ACTGTCCATCCATATGAACCGG 59.895 50.000 3.65 0.00 34.84 5.28
1679 1691 6.152661 AGGTAATGCGGAAATTTCTCATTTCA 59.847 34.615 27.50 16.96 39.18 2.69
1729 1741 2.109126 ATGGAAAGCGCCGAGAAGC 61.109 57.895 2.29 0.00 0.00 3.86
1868 1885 7.120579 TGAGCAAAGTAAAGTCTTCAAACAGAA 59.879 33.333 0.00 0.00 34.41 3.02
1871 1888 6.751514 TGAGCAAAGTAAAGTCTTCAAACA 57.248 33.333 0.00 0.00 0.00 2.83
1906 1923 9.922305 GAGAATTCCATGTAATTTAGAGAAACG 57.078 33.333 0.65 0.00 0.00 3.60
1926 1943 3.823304 GGTGAACTTCTTGCTGGAGAATT 59.177 43.478 0.00 0.00 35.27 2.17
1928 1945 2.172505 TGGTGAACTTCTTGCTGGAGAA 59.827 45.455 0.00 0.00 34.63 2.87
1929 1946 1.768275 TGGTGAACTTCTTGCTGGAGA 59.232 47.619 0.00 0.00 0.00 3.71
1930 1947 2.260844 TGGTGAACTTCTTGCTGGAG 57.739 50.000 0.00 0.00 0.00 3.86
1931 1948 2.158623 ACATGGTGAACTTCTTGCTGGA 60.159 45.455 0.00 0.00 0.00 3.86
1932 1949 2.227388 GACATGGTGAACTTCTTGCTGG 59.773 50.000 0.00 0.00 0.00 4.85
1971 1988 4.406649 TGATGATGAGAATCCAGTAGTGCA 59.593 41.667 0.00 0.00 0.00 4.57
2000 2017 7.177216 ACAATGTCATAAGAGCCTTGAATTCAA 59.823 33.333 19.45 19.45 0.00 2.69
2088 2107 3.898380 ACGACATAACCTTGCGTCA 57.102 47.368 0.00 0.00 0.00 4.35
2100 2119 1.668101 GAAGGAGGAGCGGACGACAT 61.668 60.000 0.00 0.00 0.00 3.06
2255 2274 6.068670 AGCACTTACTGGATTACCAAAAAGT 58.931 36.000 0.00 0.00 46.32 2.66
2341 2361 3.199190 TTAGCCCGCGATTTGCCG 61.199 61.111 8.23 0.00 42.08 5.69
2412 2433 3.060607 GCAAAACACACAATTAACGCCTG 60.061 43.478 0.00 0.00 0.00 4.85
2612 2638 5.405935 ACAACCATATGAAGGCCTTTTTC 57.594 39.130 21.54 7.85 0.00 2.29
2613 2639 5.422012 CCTACAACCATATGAAGGCCTTTTT 59.578 40.000 21.54 12.76 0.00 1.94
2649 2675 8.831550 AGTTTTTGTGAGAGACAGATACTTTTC 58.168 33.333 0.00 0.00 35.44 2.29
2794 2831 4.754372 TGTCATTTCTAGCAGCACAAAG 57.246 40.909 0.00 0.00 0.00 2.77
2795 2832 5.710513 AATGTCATTTCTAGCAGCACAAA 57.289 34.783 0.00 0.00 0.00 2.83
2796 2833 5.335897 GGAAATGTCATTTCTAGCAGCACAA 60.336 40.000 28.76 0.00 46.03 3.33
2807 2844 4.158579 GGAACTCCCAGGAAATGTCATTTC 59.841 45.833 24.39 24.39 40.33 2.17
2924 2961 3.005050 CACTGTCTTGTGCATGGTTTCAT 59.995 43.478 0.00 0.00 0.00 2.57
3026 3063 3.281727 ACATGAACCCTCGTAATGCAT 57.718 42.857 0.00 0.00 0.00 3.96
3037 3074 8.087750 TGAACATCTCATTTAAAACATGAACCC 58.912 33.333 0.00 0.00 30.12 4.11
3113 3150 5.005740 TGAATGCTACTGCTCAACTTGATT 58.994 37.500 0.00 0.00 40.48 2.57
3207 3244 5.799213 ACAGAAATAAAGAGGACTGGACAG 58.201 41.667 0.00 0.00 0.00 3.51
3271 3308 3.385115 ACAGGAGGTATAACTCAAGGGG 58.615 50.000 19.35 6.08 39.27 4.79
3431 3470 3.317993 TGTGCTAAAAAGGTTGAAGCCTC 59.682 43.478 0.00 0.00 38.03 4.70
3487 3564 8.331022 CAGCTACATAAACTGAACACATCATAC 58.669 37.037 0.00 0.00 37.44 2.39
3501 3578 5.551760 ATGTGCAGAACAGCTACATAAAC 57.448 39.130 0.00 0.00 43.64 2.01
3549 3626 6.886178 ATTGAGTGTTACTATGGGTTAGGT 57.114 37.500 0.00 0.00 31.68 3.08
3555 3632 7.921786 TCAAGAAATTGAGTGTTACTATGGG 57.078 36.000 0.00 0.00 0.00 4.00
3617 3698 2.672098 ACCACTGCAAAACCACCAATA 58.328 42.857 0.00 0.00 0.00 1.90
3633 3714 3.088532 TGTGCATATTCTCCCAAACCAC 58.911 45.455 0.00 0.00 0.00 4.16
3680 3761 4.507710 AGCTAGAGACATGAAAATTGCGA 58.492 39.130 0.00 0.00 0.00 5.10
3724 3805 1.879380 CAAAGTCGATGGTTTGCCTCA 59.121 47.619 0.00 0.00 35.27 3.86
3748 3829 5.823209 ACCAGTACAAGGTTGTGTTTAAC 57.177 39.130 5.59 0.00 42.31 2.01
3749 3830 5.528320 GCTACCAGTACAAGGTTGTGTTTAA 59.472 40.000 14.25 0.00 42.31 1.52
3754 3835 3.120321 TGCTACCAGTACAAGGTTGTG 57.880 47.619 14.25 7.57 42.31 3.33
3956 4113 5.277538 GCTTACTACATATTGTGGAAGCAGC 60.278 44.000 15.77 0.00 39.37 5.25
3974 4131 4.240096 GCTGAACATGCATTTTGCTTACT 58.760 39.130 2.08 0.00 45.31 2.24
4036 4194 3.442977 GGCATTGCTTGAAGAATGAGACT 59.557 43.478 16.23 0.00 32.24 3.24
4037 4195 3.442977 AGGCATTGCTTGAAGAATGAGAC 59.557 43.478 16.23 8.81 32.24 3.36
4049 4207 3.575256 TCAACATCAAGAAGGCATTGCTT 59.425 39.130 8.82 0.00 0.00 3.91
4319 4477 2.669924 CCGATCATGAATATCTGTGCGG 59.330 50.000 0.00 0.00 0.00 5.69
4373 4531 1.374560 TGACAGTGAAAACACCACCG 58.625 50.000 0.00 0.00 35.23 4.94
4538 4696 5.573380 TCCCATATCCATTCTTCTTCAGG 57.427 43.478 0.00 0.00 0.00 3.86
4562 4720 0.105964 CCCCAATAACGATCGGCAGA 59.894 55.000 20.98 1.30 0.00 4.26
4829 4987 6.583806 CGCTTGCTCTTTTAATCTGTGAATTT 59.416 34.615 0.00 0.00 0.00 1.82
4895 5053 1.303799 GGTCGTCGAGGCTGACAGTA 61.304 60.000 14.48 1.01 38.84 2.74
5176 5334 2.167398 GAGGTAGTTGCTGCGGACCA 62.167 60.000 0.00 0.00 32.28 4.02
5313 5474 3.630769 CACTGACAGCAGGCATCAAATAT 59.369 43.478 1.25 0.00 46.60 1.28
5360 5521 9.334693 CACCGAAATTAGAAGAAGAAAAAGATG 57.665 33.333 0.00 0.00 0.00 2.90
5410 5588 3.046390 CGGAAGATCAAAGCTACGCTAG 58.954 50.000 0.00 0.00 38.25 3.42
5460 5638 4.513406 TTCCTGGGTATAAATGGTCCAC 57.487 45.455 0.00 0.00 0.00 4.02
5487 5665 1.801178 GTTTGATAGCTATGCCCTCGC 59.199 52.381 11.94 0.00 0.00 5.03
5488 5666 2.037772 AGGTTTGATAGCTATGCCCTCG 59.962 50.000 11.94 0.00 31.41 4.63
5545 5723 4.679372 GCTGTTGTGCCTAGAAACCAAAAA 60.679 41.667 0.00 0.00 0.00 1.94
5546 5724 3.181480 GCTGTTGTGCCTAGAAACCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
5547 5725 2.360801 GCTGTTGTGCCTAGAAACCAAA 59.639 45.455 0.00 0.00 0.00 3.28
5591 5792 8.031277 AGTGGAAATGCATTCAGAAATACTTTC 58.969 33.333 13.38 2.47 39.98 2.62
5596 5797 6.885918 TCAGAGTGGAAATGCATTCAGAAATA 59.114 34.615 13.38 0.00 39.98 1.40
5613 5814 2.751259 CCAATGTGTTCCATCAGAGTGG 59.249 50.000 0.00 0.00 39.59 4.00
5619 5820 4.380843 AGGTTACCAATGTGTTCCATCA 57.619 40.909 3.51 0.00 31.75 3.07
5644 5848 1.151450 GGATGGCCTATGGTGGGTG 59.849 63.158 3.32 0.00 0.00 4.61
5645 5849 0.923729 TTGGATGGCCTATGGTGGGT 60.924 55.000 3.32 0.00 34.31 4.51
5646 5850 0.178981 CTTGGATGGCCTATGGTGGG 60.179 60.000 3.32 0.00 34.31 4.61
5647 5851 0.552848 ACTTGGATGGCCTATGGTGG 59.447 55.000 3.32 0.00 34.31 4.61
5835 6042 7.064490 ACTGAAAAACAAAAACCATAACTGCAG 59.936 33.333 13.48 13.48 0.00 4.41
5960 6175 1.747355 CCATCCACATTGCCTCTTCAC 59.253 52.381 0.00 0.00 0.00 3.18
5983 6198 4.275810 AGGTTGTCAATTCATGGGAGATG 58.724 43.478 0.00 0.00 0.00 2.90
5992 6207 7.255801 GGTGAGGAAAATAAGGTTGTCAATTCA 60.256 37.037 0.00 0.00 0.00 2.57
6030 6247 5.513233 ACGGAGGGAGTACTTCATTAAGTA 58.487 41.667 2.92 0.00 44.26 2.24
6037 6254 2.600790 TGAAACGGAGGGAGTACTTCA 58.399 47.619 2.92 0.00 0.00 3.02
6040 6257 4.635699 ATTTTGAAACGGAGGGAGTACT 57.364 40.909 0.00 0.00 0.00 2.73
6041 6258 5.727434 TCTATTTTGAAACGGAGGGAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
6042 6259 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
6043 6260 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
6044 6261 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
6045 6262 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
6046 6263 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
6047 6264 5.186198 AGGTCATCTATTTTGAAACGGAGG 58.814 41.667 0.00 0.00 0.00 4.30
6048 6265 7.201617 GGTTAGGTCATCTATTTTGAAACGGAG 60.202 40.741 0.00 0.00 0.00 4.63
6049 6266 6.596497 GGTTAGGTCATCTATTTTGAAACGGA 59.404 38.462 0.00 0.00 0.00 4.69
6050 6267 6.183360 GGGTTAGGTCATCTATTTTGAAACGG 60.183 42.308 0.00 0.00 0.00 4.44
6051 6268 6.373216 TGGGTTAGGTCATCTATTTTGAAACG 59.627 38.462 0.00 0.00 0.00 3.60
6052 6269 7.696992 TGGGTTAGGTCATCTATTTTGAAAC 57.303 36.000 0.00 0.00 0.00 2.78
6053 6270 7.947890 AGTTGGGTTAGGTCATCTATTTTGAAA 59.052 33.333 0.00 0.00 0.00 2.69
6054 6271 7.466804 AGTTGGGTTAGGTCATCTATTTTGAA 58.533 34.615 0.00 0.00 0.00 2.69
6055 6272 7.027874 AGTTGGGTTAGGTCATCTATTTTGA 57.972 36.000 0.00 0.00 0.00 2.69
6056 6273 7.703058 AAGTTGGGTTAGGTCATCTATTTTG 57.297 36.000 0.00 0.00 0.00 2.44
6057 6274 7.728532 ACAAAGTTGGGTTAGGTCATCTATTTT 59.271 33.333 0.00 0.00 0.00 1.82
6058 6275 7.238710 ACAAAGTTGGGTTAGGTCATCTATTT 58.761 34.615 0.00 0.00 0.00 1.40
6059 6276 6.790319 ACAAAGTTGGGTTAGGTCATCTATT 58.210 36.000 0.00 0.00 0.00 1.73
6060 6277 6.388619 ACAAAGTTGGGTTAGGTCATCTAT 57.611 37.500 0.00 0.00 0.00 1.98
6061 6278 5.836024 ACAAAGTTGGGTTAGGTCATCTA 57.164 39.130 0.00 0.00 0.00 1.98
6062 6279 4.724279 ACAAAGTTGGGTTAGGTCATCT 57.276 40.909 0.00 0.00 0.00 2.90
6063 6280 8.456471 GTTAATACAAAGTTGGGTTAGGTCATC 58.544 37.037 0.00 0.00 0.00 2.92
6064 6281 8.168058 AGTTAATACAAAGTTGGGTTAGGTCAT 58.832 33.333 0.00 0.00 0.00 3.06
6065 6282 7.519927 AGTTAATACAAAGTTGGGTTAGGTCA 58.480 34.615 0.00 0.00 0.00 4.02
6066 6283 7.991084 AGTTAATACAAAGTTGGGTTAGGTC 57.009 36.000 0.00 0.00 0.00 3.85
6067 6284 8.173542 CAAGTTAATACAAAGTTGGGTTAGGT 57.826 34.615 0.00 0.00 36.54 3.08
6075 6292 8.110860 AGATGACCCAAGTTAATACAAAGTTG 57.889 34.615 0.00 0.00 38.81 3.16
6076 6293 9.975218 ATAGATGACCCAAGTTAATACAAAGTT 57.025 29.630 0.00 0.00 0.00 2.66
6077 6294 9.975218 AATAGATGACCCAAGTTAATACAAAGT 57.025 29.630 0.00 0.00 0.00 2.66
6081 6298 9.184523 CCAAAATAGATGACCCAAGTTAATACA 57.815 33.333 0.00 0.00 0.00 2.29
6082 6299 9.403583 TCCAAAATAGATGACCCAAGTTAATAC 57.596 33.333 0.00 0.00 0.00 1.89
6083 6300 9.983024 TTCCAAAATAGATGACCCAAGTTAATA 57.017 29.630 0.00 0.00 0.00 0.98
6084 6301 8.749354 GTTCCAAAATAGATGACCCAAGTTAAT 58.251 33.333 0.00 0.00 0.00 1.40
6085 6302 7.094549 CGTTCCAAAATAGATGACCCAAGTTAA 60.095 37.037 0.00 0.00 0.00 2.01
6086 6303 6.373216 CGTTCCAAAATAGATGACCCAAGTTA 59.627 38.462 0.00 0.00 0.00 2.24
6087 6304 5.183140 CGTTCCAAAATAGATGACCCAAGTT 59.817 40.000 0.00 0.00 0.00 2.66
6088 6305 4.700213 CGTTCCAAAATAGATGACCCAAGT 59.300 41.667 0.00 0.00 0.00 3.16
6089 6306 4.096382 CCGTTCCAAAATAGATGACCCAAG 59.904 45.833 0.00 0.00 0.00 3.61
6090 6307 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
6091 6308 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
6092 6309 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
6093 6310 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
6094 6311 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6095 6312 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6096 6313 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6097 6314 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6098 6315 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6099 6316 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6100 6317 4.323715 GGTTACTCCCTCCGTTCCAAAATA 60.324 45.833 0.00 0.00 0.00 1.40
6101 6318 3.560668 GGTTACTCCCTCCGTTCCAAAAT 60.561 47.826 0.00 0.00 0.00 1.82
6102 6319 2.224597 GGTTACTCCCTCCGTTCCAAAA 60.225 50.000 0.00 0.00 0.00 2.44
6103 6320 1.348696 GGTTACTCCCTCCGTTCCAAA 59.651 52.381 0.00 0.00 0.00 3.28
6104 6321 0.978907 GGTTACTCCCTCCGTTCCAA 59.021 55.000 0.00 0.00 0.00 3.53
6105 6322 0.178926 TGGTTACTCCCTCCGTTCCA 60.179 55.000 0.00 0.00 34.77 3.53
6106 6323 0.248565 GTGGTTACTCCCTCCGTTCC 59.751 60.000 0.00 0.00 34.77 3.62
6107 6324 0.248565 GGTGGTTACTCCCTCCGTTC 59.751 60.000 0.00 0.00 34.77 3.95
6108 6325 0.472352 TGGTGGTTACTCCCTCCGTT 60.472 55.000 0.00 0.00 33.88 4.44
6109 6326 0.252558 ATGGTGGTTACTCCCTCCGT 60.253 55.000 0.00 0.00 33.88 4.69
6110 6327 0.178068 CATGGTGGTTACTCCCTCCG 59.822 60.000 0.00 0.00 33.88 4.63
6111 6328 1.580059 TCATGGTGGTTACTCCCTCC 58.420 55.000 0.00 0.00 34.77 4.30
6112 6329 5.367945 TTTATCATGGTGGTTACTCCCTC 57.632 43.478 0.00 0.00 34.77 4.30
6113 6330 5.789574 TTTTATCATGGTGGTTACTCCCT 57.210 39.130 0.00 0.00 34.77 4.20
6114 6331 6.682861 GCATTTTTATCATGGTGGTTACTCCC 60.683 42.308 0.00 0.00 34.77 4.30
6115 6332 6.127479 TGCATTTTTATCATGGTGGTTACTCC 60.127 38.462 0.00 0.00 0.00 3.85
6116 6333 6.751888 GTGCATTTTTATCATGGTGGTTACTC 59.248 38.462 0.00 0.00 0.00 2.59
6183 6400 1.302285 CTTGGATGAGCTGGCACCT 59.698 57.895 0.00 0.00 0.00 4.00
6203 6420 6.719370 ACCAAAAGTTTATGAAGCTATGTGGA 59.281 34.615 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.